refactor(ids): move to PSIDeviceBase and preview signal

# Conflicts:
#   docs/user/ptychography/omny.md

.copier-answers.yml

@@ -0,0 +1,9 @@
+# Do not edit this file!
+# It is needed to track the repo template version, and editing may break things.
+# This file will be overwritten by copier on template updates.
+
+_commit: v1.0.0
+_src_path: https://github.com/bec-project/plugin_copier_template.git
+make_commit: false
+project_name: csaxs_bec
+widget_plugins_input: []

.gitlab-ci.yml

@@ -1,105 +1,20 @@
-# This file is a template, and might need editing before it works on your project.
-# Official language image. Look for the different tagged releases at:
-# https://hub.docker.com/r/library/python/tags/
-image: $CI_DEPENDENCY_PROXY_GROUP_IMAGE_PREFIX/python:3.10
-
-workflow:
-  rules:
-    - if: $CI_PIPELINE_SOURCE == "schedule"
-    - if: $CI_PIPELINE_SOURCE == "web"
-    - if: $CI_PIPELINE_SOURCE == "merge_request_event"
-    - if: $CI_COMMIT_BRANCH && $CI_OPEN_MERGE_REQUESTS
-      when: never
-    - if: $CI_COMMIT_BRANCH
-
 include:
-  - template: Jobs/Secret-Detection.gitlab-ci.yml
+  - project: bec/awi_utils
+    file: /templates/plugin-repo-template.yml
+    inputs:
+      name: "csaxs"
+      target: "csaxs_bec"
+      branch: $CHILD_PIPELINE_BRANCH
 
-
-#commands to run in the Docker container before starting each job.
-before_script:
-  - pip install -e .[dev]
-
-# different stages in the pipeline
-stages:
-  - Formatter
-  - test # must be called test for security/secret-detection to work
-  - AdditionalTests
-  - Deploy
-
-pylint:
-  stage: Formatter
-  script:
-    - pip install pylint pylint-exit anybadge
-    - pip install -e .[dev]
-    - mkdir ./pylint
-    - pylint ./csaxs_bec --output-format=text --output=./pylint/pylint.log | tee ./pylint/pylint.log || pylint-exit $?
-    - PYLINT_SCORE=$(sed -n 's/^Your code has been rated at \([-0-9.]*\)\/.*/\1/p' ./pylint/pylint.log)
-    - anybadge --label=Pylint --file=pylint/pylint.svg --value=$PYLINT_SCORE 2=red 4=orange 8=yellow 10=green
-    - echo "Pylint score is $PYLINT_SCORE"
-  artifacts:
-    paths:
-      - ./pylint/
-    expire_in: 1 week
-
-pylint-check:
-  stage: Formatter
+pages:
+  stage: Deploy
   needs: []
-  allow_failure: true
-  before_script:
-    - pip install pylint pylint-exit anybadge
-    - apt-get update
-    - apt-get install -y bc
+  variables:
+    TARGET_BRANCH: $CI_COMMIT_REF_NAME
+  rules:
+    - if: "$CI_COMMIT_TAG != null"
+      variables:
+        TARGET_BRANCH: $CI_COMMIT_TAG
+    - if: '$CI_COMMIT_REF_NAME == "main" && $CI_PROJECT_PATH == "bec/csaxs_bec"'
   script:
-    # Identify changed Python files
-    - if [ "$CI_PIPELINE_SOURCE" == "merge_request_event" ]; then
-        TARGET_BRANCH_COMMIT_SHA=$(git rev-parse $CI_MERGE_REQUEST_TARGET_BRANCH_NAME);
-        CHANGED_FILES=$(git diff --name-only $SOURCE_BRANCH_COMMIT_SHA $TARGET_BRANCH_COMMIT_SHA | grep '\.py$' || true);
-      else
-        CHANGED_FILES=$(git diff --name-only $CI_COMMIT_BEFORE_SHA $CI_COMMIT_SHA | grep '\.py$' || true);
-      fi
-    - if [ -z "$CHANGED_FILES" ]; then echo "No Python files changed."; exit 0; fi
-
-    # Run pylint only on changed files
-    - mkdir ./pylint
-    - pylint $CHANGED_FILES --output-format=text . | tee ./pylint/pylint_changed_files.log || pylint-exit $?
-    - PYLINT_SCORE=$(sed -n 's/^Your code has been rated at \([-0-9.]*\)\/.*/\1/p' ./pylint/pylint_changed_files.log)
-    - echo "Pylint score is $PYLINT_SCORE"
-
-    # Fail the job if the pylint score is below 9
-    - if [ "$(echo "$PYLINT_SCORE < 9" | bc)" -eq 1 ]; then echo "Your pylint score is below the acceptable threshold (9)."; exit 1; fi
-  artifacts:
-    paths:
-      - ./pylint/
-    expire_in: 1 week
-
-secret_detection:
-  before_script:
-    - ''
-
-config_test:
-  stage: test 
-  script:
-    - ophyd_test --config ./csaxs_bec/device_configs/ --output ./config_tests
-  artifacts:
-    paths:
-      - ./config_tests
-    when: on_failure
-    expire_in: "30 days"
-  allow_failure: true
-
-
-pytest:
-  stage: test
-  script:
-    - pip install coverage
-    - coverage run --source=./csaxs_bec -m pytest -v --junitxml=report.xml --random-order --full-trace ./tests
-    - coverage report
-    - coverage xml
-  coverage: '/(?i)total.*? (100(?:\.0+)?\%|[1-9]?\d(?:\.\d+)?\%)$/'
-  artifacts:
-    reports:
-      junit: report.xml
-      coverage_report:
-        coverage_format: cobertura
-        path: coverage.xml
+    - curl -X POST -d "branches=$CI_COMMIT_REF_NAME" -d "token=$RTD_TOKEN" https://readthedocs.org/api/v2/webhook/sls-csaxs/270162/

.readthedocs.yaml

@@ -0,0 +1,29 @@
+# .readthedocs.yaml
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+version: 2
+
+# Set the version of Python and other tools you might need
+build:
+  os: ubuntu-20.04
+  tools:
+    python: "3.10"
+  jobs:
+    pre_install:
+      - pip install .
+
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+   configuration: docs/conf.py
+
+# If using Sphinx, optionally build your docs in additional formats such as PDF
+# formats:
+#    - pdf
+
+# Optionally declare the Python requirements required to build your docs
+python:
+   install:
+   - requirements: docs/requirements.txt
+

LICENSE

@@ -0,0 +1,29 @@
+
+BSD 3-Clause License
+
+Copyright (c) 2025, Paul Scherrer Institute 
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice,
+   this list of conditions and the following disclaimer in the documentation
+   and/or other materials provided with the distribution.
+
+3. Neither the name of the copyright holder nor the names of its
+   contributors may be used to endorse or promote products derived from
+   this software without specific prior written permission.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
+AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
+IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
+DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
+FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
+DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
+SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
+CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
+OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

bin/.gitignore

@@ -0,0 +1 @@
+# Add anything you don't want to check in to git, e.g. very large files

bin/cbf_converter/cbf_converter.py

@@ -3,8 +3,9 @@ from __future__ import annotations
 import os
 import subprocess
 
-from bec_lib import MessageEndpoints, RedisConnector, bec_logger, messages
-from bec_lib.redis_connector import MessageObject
+from bec_lib import bec_logger, messages
+from bec_lib.endpoints import MessageEndpoints
+from bec_lib.redis_connector import MessageObject, RedisConnector
 
 logger = bec_logger.logger
 
@@ -12,7 +13,6 @@ logger = bec_logger.logger
 class PilatusConverter:
     def __init__(self, host: str, port: int) -> None:
         self._connector = RedisConnector(f"{host}:{port}")
-        self._producer = self._connector.producer()
 
     def start(self) -> None:
         """start the consumer"""
@@ -27,7 +27,7 @@ class PilatusConverter:
             message (MessageObject): Message object
             parent (PilatusConverter): Parent object
         """
-        msg = messages.MessageReader.loads(message.value)
+        msg = message.value
         print(msg)
         if not msg:
             return
@@ -56,10 +56,9 @@ class PilatusConverter:
         """
         Start the consumer.
         """
-        file_consumer = self._connector.consumer(
+        self._connector.register(
             MessageEndpoints.file_event("pilatus_2"), cb=self.on_new_message, parent=self
         )
-        file_consumer.start()
 
 
 if __name__ == "__main__":

csaxs_bec/bec_ipython_client/plugins/LamNI/lamni_optics_mixin.py

@@ -13,6 +13,166 @@ umv = builtins.__dict__.get("umv")
 bec = builtins.__dict__.get("bec")
 
 
+class LamNIInitError(Exception):
+    pass
+
+
+class LaMNIInitStagesMixin:
+    def lamni_init_stages(self):
+        user_input = input("Starting initialization of LamNI stages. OK? [y/n]")
+        if user_input == "y":
+            print("staring...")
+            dev.lsamrot.enabled = True
+        else:
+            return
+
+        if self.check_all_axes_of_lamni_referenced():
+            user_input = input("Continue anyways? [y/n]")
+            if user_input == "y":
+                print("ok then...")
+            else:
+                return
+
+        axis_id_lsamrot = dev.lsamrot._config["deviceConfig"].get("axis_Id")
+        if dev.lsamrot.controller.get_motor_limit_switch(axis_id_lsamrot)[1] == False:
+            user_input = input("The rotation stage will be moved to one limit [y/n]")
+            if user_input == "y":
+                print("starting...")
+            else:
+                return
+
+            self.drive_axis_to_limit(dev.lsamrot, "forward")
+            dev.lsamrot.enabled = False
+            print("Now hard reboot the controller and run the initialization routine again.")
+            print("The controller will be disabled in bec. To enable dev.lsamrot.enabled=True")
+            return
+
+        user_input = input(
+            "Init of loptz. Can the stage move to the upstream limit without collision?? [y/n]"
+        )
+        if user_input == "y":
+            print("ok then...")
+        else:
+            return
+
+        print("Referencing loptz")
+        self.drive_axis_to_limit(dev.loptz, "forward")
+        self.find_reference_mark(dev.loptz)
+
+        print("Referencing loptx")
+        self.drive_axis_to_limit(dev.loptx, "reverse")
+        self.find_reference_mark(dev.loptx)
+
+        print("Referencing lopty")
+        self.drive_axis_to_limit(dev.lopty, "forward")
+        self.find_reference_mark(dev.lopty)
+
+        print("Referencing lsamx")
+        self.drive_axis_to_limit(dev.lsamx, "forward")
+        self.find_reference_mark(dev.lsamx)
+
+        print("Referencing lsamy")
+        self.drive_axis_to_limit(dev.lsamy, "reverse")
+        self.find_reference_mark(dev.lsamy)
+
+        # the dual encoder requires the reference mark to pass on both encoders
+        print("Referencing lsamrot")
+        self.drive_axis_to_limit(dev.lsamrot, "reverse")
+        time.sleep(0.1)
+        self.find_reference_mark(dev.lsamrot)
+
+        user_input = input("Init of leye. Can the stage move to -x limit without collision? [y/n]")
+        if user_input == "y":
+            print("starting...")
+        else:
+            return
+
+        print("Referencing leyex")
+        self.drive_axis_to_limit(dev.leyex, "forward")
+        print("Referencing leyey")
+        self.drive_axis_to_limit(dev.leyey, "forward")
+
+        # set_lm lsamx 6 14
+        # set_lm lsamy 6 14
+        # set_lm lsamrot -3 362
+        # set_lm loptx -1 -0.2
+        # set_lm lopty 3.0 3.6
+        # set_lm loptz 82 87
+        # set_lm leyex 0 25
+        # set_lm leyey 0.5 50
+
+        print("Init of Smaract stages")
+        dev.losax.controller.find_reference_mark(2, 0, 1000, 1)
+        time.sleep(1)
+        dev.losax.controller.find_reference_mark(0, 0, 1000, 1)
+        time.sleep(1)
+        dev.losax.controller.find_reference_mark(1, 0, 1000, 1)
+        time.sleep(1)
+        # dev.losax.controller.find_reference_mark(3, 1, 1000, 1)
+        # time.sleep(1)
+        # dev.losax.controller.find_reference_mark(4, 1, 1000, 1)
+        # time.sleep(1)
+
+        # set_lm losax -1.5 0.25
+        # set_lm losay -2.5 4.1
+        # set_lm losaz -4.1 -0.5
+        # set_lm lcsy -1.5 5
+
+        self._align_setup()
+
+    def find_reference_mark(self, device):
+        axis_id = device._config["deviceConfig"].get("axis_Id")
+        axis_id_numeric = self.axis_id_to_numeric(axis_id)
+        device.controller.find_reference(axis_id_numeric)
+
+    def drive_axis_to_limit(self, device, direction):
+        axis_id = device._config["deviceConfig"].get("axis_Id")
+        axis_id_numeric = self.axis_id_to_numeric(axis_id)
+        device.controller.drive_axis_to_limit(axis_id_numeric, direction)
+
+    def axis_id_to_numeric(self, axis_id) -> int:
+        return ord(axis_id.lower()) - 97
+
+    def _align_setup(self):
+        user_input = input("Start moving stages to default initial positions? [y/n]")
+        if user_input == "y":
+            print("Start moving stages...")
+        else:
+            print("Stopping.")
+            return
+
+        lsamx_center = dev.lsamx.user_parameter.get("center")
+        if lsamx_center is None:
+            raise LamNIInitError(
+                "Could not find a lsamx center position. Please check your device config."
+            )
+        lsamy_center = dev.lsamy.user_parameter.get("center")
+        if lsamy_center is None:
+            raise LamNIInitError(
+                "Could not find a lsamy center position. Please check your device config."
+            )
+        umv(dev.lsamx, lsamx_center, dev.lsamy, lsamy_center, dev.loptx, -0.3, dev.lopty, 0)
+        umv(dev.losax, -1)
+        umv(dev.loptz, 82.25)
+        umv(dev.lsamrot, -1)
+        umv(dev.lsamrot, 0)
+
+        time.sleep(2)
+        dev.rtx.controller.feedback_disable_and_even_reset_lamni_angle_interferometer()
+
+    def check_all_axes_of_lamni_referenced(self):
+        if (
+            dev.losax.controller.axis_is_referenced(0)
+            & dev.losax.controller.axis_is_referenced(1)
+            & dev.losax.controller.axis_is_referenced(2)
+            & dev.lsamx.controller.all_axes_referenced()
+        ):
+            print("All axes of LamNI are referenced.")
+            return True
+        else:
+            return False
+
+
 class LamNIOpticsMixin:
     @staticmethod
     def _get_user_param_safe(device, var):
@@ -120,14 +280,22 @@ class LamNIOpticsMixin:
         umv(dev.losaz, losaz_out)
         umv(dev.losay, losay_out)
 
-    def lfzp_info(self):
+    def lfzp_info(self, mokev_val=-1):
+
+        if mokev_val == -1:
+            try:
+                mokev_val = dev.mokev.readback.get()
+            except:
+                print(
+                    "Device mokev does not exist. You can specify the energy in keV as an argument instead."
+                )
+                return
         loptz_val = dev.loptz.read()["loptz"]["value"]
         distance = -loptz_val + 85.6 + 52
         print(f"The sample is in a distance of {distance:.1f} mm from the FZP.")
 
         diameters = [80e-6, 100e-6, 120e-6, 150e-6, 170e-6, 200e-6, 220e-6, 250e-6]
 
-        mokev_val = dev.mokev.read()["mokev"]["value"]
         console = Console()
         table = Table(
             title=f"At the current energy of {mokev_val:.4f} keV we have following options:",

csaxs_bec/bec_ipython_client/plugins/LamNI/x_ray_eye_align.py

@@ -16,7 +16,7 @@ from typeguard import typechecked
 
 from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen
 
-from .lamni_optics_mixin import LamNIOpticsMixin
+from .lamni_optics_mixin import LaMNIInitStagesMixin, LamNIOpticsMixin
 
 logger = bec_logger.logger
 bec = builtins.__dict__.get("bec")
@@ -32,7 +32,7 @@ class XrayEyeAlign:
         self.lamni = lamni
         self.device_manager = client.device_manager
         self.scans = client.scans
-        self.xeye = self.device_manager.devices.xeye
+        # self.xeye = self.device_manager.devices.xeye
         self.alignment_values = defaultdict(list)
         self._reset_init_values()
         self.corr_pos_x = []
@@ -511,7 +511,7 @@ class LamNI(LamNIOpticsMixin):
         super().__init__()
         self.client = client
         self.align = XrayEyeAlign(client, self)
-
+        self.init = LaMNIInitStagesMixin()
         self.check_shutter = True
         self.check_light_available = True
         self.check_fofb = True
@@ -586,6 +586,27 @@ class LamNI(LamNIOpticsMixin):
     def tomo_circfov(self, val: float):
         self.client.set_global_var("tomo_circfov", val)
 
+    @property
+    def tomo_type(self):
+        val = self.client.get_global_var("tomo_type")
+        if val is None:
+            return 1
+        return val
+
+    @tomo_type.setter
+    def tomo_type(self, val: float):
+        if val == 1:
+            # equally spaced tomography with 8 sub tomograms
+            self.client.set_global_var("tomo_type", val)
+        # elif val == 2:
+        #    # golden ratio tomography (sorted bunches)
+        #    self.client.set_global_var("tomo_type", val)
+        # elif val == 3:
+        #    # equally spaced tomography with starting angles shifted by golden ratio
+        #    self.client.set_global_var("tomo_type", val)
+        else:
+            raise ValueError("Unknown tomo_type.")
+
     @property
     def tomo_countingtime(self):
         val = self.client.get_global_var("tomo_countingtime")
@@ -948,25 +969,63 @@ class LamNI(LamNIOpticsMixin):
         # _tomo_shift_angles (potential global variable)
         _tomo_shift_angles = 0
         angle_end = start_angle + 360
-        for angle in np.linspace(
+        angles = np.linspace(
             start_angle + _tomo_shift_angles,
             angle_end,
             num=int(360 / self.tomo_angle_stepsize) + 1,
             endpoint=True,
-        ):
-            successful = False
-            error_caught = False
-            if 0 <= angle < 360.05:
-                print(f"Starting LamNI scan for angle {angle}")
-                while not successful:
-                    self._start_beam_check()
-                    if not self.special_angles:
-                        self._current_special_angles = []
-                    if self._current_special_angles:
-                        next_special_angle = self._current_special_angles[0]
-                        if np.isclose(angle, next_special_angle, atol=0.5):
-                            self._current_special_angles.pop(0)
-                            num_repeats = self.special_angle_repeats
+        )
+
+        # reverse even sub-tomograms
+        if not (subtomo_number % 2):
+            angles = np.flip(angles)
+        for angle in angles:
+            self.progress["subtomo"] = subtomo_number
+            self.progress["subtomo_projection"] = angles.index(angle)
+            self.progress["subtomo_total_projections"] = 180 / self.tomo_angle_stepsize
+            self.progress["projection"] = (subtomo_number - 1) * self.progress[
+                "subtomo_total_projections"
+            ] + self.progress["subtomo_projection"]
+            self.progress["total_projections"] = 180 / self.tomo_angle_stepsize * 8
+            self.progress["angle"] = angle
+            self._tomo_scan_at_angle(angle, subtomo_number)
+
+    def _print_progress(self):
+        print("\x1b[95mProgress report:")
+        print(f"Tomo type: ....................... {self.progress['tomo_type']}")
+        print(f"Projection: ...................... {self.progress['projection']}")
+        print(f"Total projections expected ....... {self.progress['total_projections']}")
+        print(f"Angle: ........................... {self.progress['angle']}")
+        print(f"Current subtomo: ................. {self.progress['subtomo']}")
+        print(f"Current projection within subtomo: {self.progress['subtomo_projection']}\x1b[0m")
+
+    def _tomo_scan_at_angle(self, angle, subtomo_number):
+        successful = False
+        error_caught = False
+        if 0 <= angle < 360.05:
+            print(f"Starting LamNI scan for angle {angle} in subtomo {subtomo_number}")
+            self._print_progress()
+            while not successful:
+                self._start_beam_check()
+                if not self.special_angles:
+                    self._current_special_angles = []
+                if self._current_special_angles:
+                    next_special_angle = self._current_special_angles[0]
+                    if np.isclose(angle, next_special_angle, atol=0.5):
+                        self._current_special_angles.pop(0)
+                        num_repeats = self.special_angle_repeats
+                else:
+                    num_repeats = 1
+                try:
+                    start_scan_number = bec.queue.next_scan_number
+                    for i in range(num_repeats):
+                        self._at_each_angle(angle)
+                    error_caught = False
+                except AlarmBase as exc:
+                    if exc.alarm_type == "TimeoutError":
+                        bec.queue.request_queue_reset()
+                        time.sleep(2)
+                        error_caught = True
                     else:
                         num_repeats = 1
                     try:
@@ -1006,7 +1065,7 @@ class LamNI(LamNIOpticsMixin):
         scans = builtins.__dict__.get("scans")
         self._current_special_angles = self.special_angles.copy()
 
-        if subtomo_start == 1 and start_angle is None:
+        if self.tomo_type == 1 and subtomo_start == 1 and start_angle is None:
             # pylint: disable=undefined-variable
             self.tomo_id = self.add_sample_database(
                 self.sample_name,

csaxs_bec/bec_ipython_client/plugins/flomni/correction_flomni_20210300_360deg.txt

@@ -0,0 +1,351 @@
+corr_elements = 175 
+corr_angle[0] = 0.100000 
+corr_angle[1] = 1.001000 
+corr_angle[2] = 1.902000 
+corr_angle[3] = 2.798000 
+corr_angle[4] = 7.305000 
+corr_angle[5] = 8.204000 
+corr_angle[6] = 9.104000 
+corr_angle[7] = 10.005000 
+corr_angle[8] = 14.504000 
+corr_angle[9] = 15.404000 
+corr_angle[10] = 16.304000 
+corr_angle[11] = 17.204000 
+corr_angle[12] = 21.704000 
+corr_angle[13] = 22.604000 
+corr_angle[14] = 23.504000 
+corr_angle[15] = 24.404000 
+corr_angle[16] = 28.904000 
+corr_angle[17] = 29.804000 
+corr_angle[18] = 30.704000 
+corr_angle[19] = 31.604000 
+corr_angle[20] = 36.104000 
+corr_angle[21] = 37.004000 
+corr_angle[22] = 37.904000 
+corr_angle[23] = 38.804000 
+corr_angle[24] = 43.305000 
+corr_angle[25] = 44.205000 
+corr_angle[26] = 45.104000 
+corr_angle[27] = 46.005000 
+corr_angle[28] = 50.504000 
+corr_angle[29] = 51.404000 
+corr_angle[30] = 52.305000 
+corr_angle[31] = 53.205000 
+corr_angle[32] = 57.705000 
+corr_angle[33] = 58.605000 
+corr_angle[34] = 59.505000 
+corr_angle[35] = 60.405000 
+corr_angle[36] = 64.904000 
+corr_angle[37] = 65.804000 
+corr_angle[38] = 66.704000 
+corr_angle[39] = 67.604000 
+corr_angle[40] = 72.104000 
+corr_angle[41] = 73.004000 
+corr_angle[42] = 73.904000 
+corr_angle[43] = 74.804000 
+corr_angle[44] = 79.304000 
+corr_angle[45] = 80.204000 
+corr_angle[46] = 81.104000 
+corr_angle[47] = 82.005000 
+corr_angle[48] = 86.505000 
+corr_angle[49] = 87.404000 
+corr_angle[50] = 88.304000 
+corr_angle[51] = 89.205000 
+corr_angle[52] = 93.704000 
+corr_angle[53] = 94.604000 
+corr_angle[54] = 95.505000 
+corr_angle[55] = 96.404000 
+corr_angle[56] = 100.904000 
+corr_angle[57] = 101.804000 
+corr_angle[58] = 102.704000 
+corr_angle[59] = 103.604000 
+corr_angle[60] = 108.104000 
+corr_angle[61] = 109.004000 
+corr_angle[62] = 109.904000 
+corr_angle[63] = 110.804000 
+corr_angle[64] = 115.304000 
+corr_angle[65] = 116.204000 
+corr_angle[66] = 117.104000 
+corr_angle[67] = 118.004000 
+corr_angle[68] = 122.504000 
+corr_angle[69] = 123.404000 
+corr_angle[70] = 124.304000 
+corr_angle[71] = 125.204000 
+corr_angle[72] = 129.704000 
+corr_angle[73] = 130.604000 
+corr_angle[74] = 131.504000 
+corr_angle[75] = 132.404000 
+corr_angle[76] = 136.904000 
+corr_angle[77] = 137.804000 
+corr_angle[78] = 138.701000 
+corr_angle[79] = 139.604000 
+corr_angle[80] = 144.104000 
+corr_angle[81] = 145.004000 
+corr_angle[82] = 145.904000 
+corr_angle[83] = 146.804000 
+corr_angle[84] = 151.304000 
+corr_angle[85] = 152.204000 
+corr_angle[86] = 153.104000 
+corr_angle[87] = 154.004000 
+corr_angle[88] = 158.504000 
+corr_angle[89] = 159.404000 
+corr_angle[90] = 160.304000 
+corr_angle[91] = 161.204000 
+corr_angle[92] = 165.704000 
+corr_angle[93] = 166.604000 
+corr_angle[94] = 167.504000 
+corr_angle[95] = 168.404000 
+corr_angle[96] = 172.904000 
+corr_angle[97] = 173.805000 
+corr_angle[98] = 174.704000 
+corr_angle[99] = 180.104000 
+corr_angle[100] = 183.704000 
+corr_angle[101] = 184.603000 
+corr_angle[102] = 185.504000 
+corr_angle[103] = 190.904000 
+corr_angle[104] = 191.805000 
+corr_angle[105] = 192.704000 
+corr_angle[106] = 198.104000 
+corr_angle[107] = 199.004000 
+corr_angle[108] = 199.904000 
+corr_angle[109] = 205.304000 
+corr_angle[110] = 206.204000 
+corr_angle[111] = 207.104000 
+corr_angle[112] = 212.504000 
+corr_angle[113] = 213.404000 
+corr_angle[114] = 214.304000 
+corr_angle[115] = 219.704000 
+corr_angle[116] = 220.604000 
+corr_angle[117] = 221.504000 
+corr_angle[118] = 226.904000 
+corr_angle[119] = 227.804000 
+corr_angle[120] = 228.704000 
+corr_angle[121] = 234.104000 
+corr_angle[122] = 235.004000 
+corr_angle[123] = 235.904000 
+corr_angle[124] = 241.304000 
+corr_angle[125] = 242.204000 
+corr_angle[126] = 243.104000 
+corr_angle[127] = 248.504000 
+corr_angle[128] = 249.404000 
+corr_angle[129] = 250.304000 
+corr_angle[130] = 255.704000 
+corr_angle[131] = 256.604000 
+corr_angle[132] = 257.504000 
+corr_angle[133] = 262.904000 
+corr_angle[134] = 263.804000 
+corr_angle[135] = 264.704000 
+corr_angle[136] = 270.104000 
+corr_angle[137] = 271.004000 
+corr_angle[138] = 271.904000 
+corr_angle[139] = 277.304000 
+corr_angle[140] = 278.205000 
+corr_angle[141] = 279.104000 
+corr_angle[142] = 284.504000 
+corr_angle[143] = 285.405000 
+corr_angle[144] = 286.304000 
+corr_angle[145] = 291.703000 
+corr_angle[146] = 292.604000 
+corr_angle[147] = 293.504000 
+corr_angle[148] = 298.904000 
+corr_angle[149] = 299.804000 
+corr_angle[150] = 300.704000 
+corr_angle[151] = 306.104000 
+corr_angle[152] = 307.004000 
+corr_angle[153] = 307.904000 
+corr_angle[154] = 313.304000 
+corr_angle[155] = 314.204000 
+corr_angle[156] = 315.104000 
+corr_angle[157] = 320.504000 
+corr_angle[158] = 321.404000 
+corr_angle[159] = 322.304000 
+corr_angle[160] = 327.704000 
+corr_angle[161] = 328.605000 
+corr_angle[162] = 329.504000 
+corr_angle[163] = 334.904000 
+corr_angle[164] = 335.804000 
+corr_angle[165] = 336.705000 
+corr_angle[166] = 342.104000 
+corr_angle[167] = 343.004000 
+corr_angle[168] = 343.904000 
+corr_angle[169] = 349.304000 
+corr_angle[170] = 350.204000 
+corr_angle[171] = 351.104000 
+corr_angle[172] = 356.504000 
+corr_angle[173] = 357.404000 
+corr_angle[174] = 358.304000 
+corr_pos[0] = 0.012330 
+corr_pos[1] = 0.024870 
+corr_pos[2] = 0.037262 
+corr_pos[3] = 0.049438 
+corr_pos[4] = 0.108462 
+corr_pos[5] = 0.119791 
+corr_pos[6] = 0.130986 
+corr_pos[7] = 0.142044 
+corr_pos[8] = 0.195045 
+corr_pos[9] = 0.205834 
+corr_pos[10] = 0.216589 
+corr_pos[11] = 0.226402 
+corr_pos[12] = 0.271931 
+corr_pos[13] = 0.281684 
+corr_pos[14] = 0.290769 
+corr_pos[15] = 0.299392 
+corr_pos[16] = 0.337986 
+corr_pos[17] = 0.345178 
+corr_pos[18] = 0.352253 
+corr_pos[19] = 0.358528 
+corr_pos[20] = 0.379520 
+corr_pos[21] = 0.382947 
+corr_pos[22] = 0.386110 
+corr_pos[23] = 0.388887 
+corr_pos[24] = 0.395645 
+corr_pos[25] = 0.396154 
+corr_pos[26] = 0.396679 
+corr_pos[27] = 0.396367 
+corr_pos[28] = 0.392400 
+corr_pos[29] = 0.392530 
+corr_pos[30] = 0.391826 
+corr_pos[31] = 0.391325 
+corr_pos[32] = 0.379188 
+corr_pos[33] = 0.376449 
+corr_pos[34] = 0.373195 
+corr_pos[35] = 0.369588 
+corr_pos[36] = 0.343021 
+corr_pos[37] = 0.336754 
+corr_pos[38] = 0.330310 
+corr_pos[39] = 0.323447 
+corr_pos[40] = 0.281171 
+corr_pos[41] = 0.272735 
+corr_pos[42] = 0.263888 
+corr_pos[43] = 0.254469 
+corr_pos[44] = 0.203024 
+corr_pos[45] = 0.192980 
+corr_pos[46] = 0.182359 
+corr_pos[47] = 0.170780 
+corr_pos[48] = 0.111580 
+corr_pos[49] = 0.101222 
+corr_pos[50] = 0.090051 
+corr_pos[51] = 0.077918 
+corr_pos[52] = 0.015225 
+corr_pos[53] = 0.003876 
+corr_pos[54] = -0.007756 
+corr_pos[55] = -0.020383 
+corr_pos[56] = -0.084910 
+corr_pos[57] = -0.096848 
+corr_pos[58] = -0.108732 
+corr_pos[59] = -0.121432 
+corr_pos[60] = -0.184349 
+corr_pos[61] = -0.195904 
+corr_pos[62] = -0.207113 
+corr_pos[63] = -0.219319 
+corr_pos[64] = -0.274799 
+corr_pos[65] = -0.284942 
+corr_pos[66] = -0.294809 
+corr_pos[67] = -0.305437 
+corr_pos[68] = -0.352114 
+corr_pos[69] = -0.359689 
+corr_pos[70] = -0.367451 
+corr_pos[71] = -0.375629 
+corr_pos[72] = -0.404347 
+corr_pos[73] = -0.407683 
+corr_pos[74] = -0.410857 
+corr_pos[75] = -0.414904 
+corr_pos[76] = -0.424625 
+corr_pos[77] = -0.424357 
+corr_pos[78] = -0.424411 
+corr_pos[79] = -0.424615 
+corr_pos[80] = -0.421392 
+corr_pos[81] = -0.419977 
+corr_pos[82] = -0.417860 
+corr_pos[83] = -0.416400 
+corr_pos[84] = -0.398108 
+corr_pos[85] = -0.392613 
+corr_pos[86] = -0.386455 
+corr_pos[87] = -0.380338 
+corr_pos[88] = -0.341288 
+corr_pos[89] = -0.332298 
+corr_pos[90] = -0.322767 
+corr_pos[91] = -0.311630 
+corr_pos[92] = -0.256798 
+corr_pos[93] = -0.244808 
+corr_pos[94] = -0.232932 
+corr_pos[95] = -0.219785 
+corr_pos[96] = -0.158685 
+corr_pos[97] = -0.146198 
+corr_pos[98] = -0.130743 
+corr_pos[99] = -0.054066 
+corr_pos[100] = -0.001498 
+corr_pos[101] = 0.012010 
+corr_pos[102] = 0.025195 
+corr_pos[103] = 0.094982 
+corr_pos[104] = 0.109235 
+corr_pos[105] = 0.120813 
+corr_pos[106] = 0.179893 
+corr_pos[107] = 0.192147 
+corr_pos[108] = 0.201902 
+corr_pos[109] = 0.245092 
+corr_pos[110] = 0.250501 
+corr_pos[111] = 0.255536 
+corr_pos[112] = 0.280598 
+corr_pos[113] = 0.280673 
+corr_pos[114] = 0.282529 
+corr_pos[115] = 0.293286 
+corr_pos[116] = 0.292713 
+corr_pos[117] = 0.291123 
+corr_pos[118] = 0.288721 
+corr_pos[119] = 0.288260 
+corr_pos[120] = 0.286480 
+corr_pos[121] = 0.271630 
+corr_pos[122] = 0.268004 
+corr_pos[123] = 0.265418 
+corr_pos[124] = 0.239187 
+corr_pos[125] = 0.233224 
+corr_pos[126] = 0.226652 
+corr_pos[127] = 0.189034 
+corr_pos[128] = 0.180302 
+corr_pos[129] = 0.170931 
+corr_pos[130] = 0.125760 
+corr_pos[131] = 0.116433 
+corr_pos[132] = 0.106845 
+corr_pos[133] = 0.057551 
+corr_pos[134] = 0.048531 
+corr_pos[135] = 0.038276 
+corr_pos[136] = -0.012292 
+corr_pos[137] = -0.021223 
+corr_pos[138] = -0.030046 
+corr_pos[139] = -0.077647 
+corr_pos[140] = -0.085863 
+corr_pos[141] = -0.093816 
+corr_pos[142] = -0.138532 
+corr_pos[143] = -0.145584 
+corr_pos[144] = -0.152699 
+corr_pos[145] = -0.192594 
+corr_pos[146] = -0.200980 
+corr_pos[147] = -0.208816 
+corr_pos[148] = -0.241983 
+corr_pos[149] = -0.248319 
+corr_pos[150] = -0.253789 
+corr_pos[151] = -0.276869 
+corr_pos[152] = -0.279240 
+corr_pos[153] = -0.281538 
+corr_pos[154] = -0.294317 
+corr_pos[155] = -0.295586 
+corr_pos[156] = -0.296029 
+corr_pos[157] = -0.297443 
+corr_pos[158] = -0.297185 
+corr_pos[159] = -0.295946 
+corr_pos[160] = -0.284463 
+corr_pos[161] = -0.282598 
+corr_pos[162] = -0.281260 
+corr_pos[163] = -0.256509 
+corr_pos[164] = -0.250326 
+corr_pos[165] = -0.244372 
+corr_pos[166] = -0.204043 
+corr_pos[167] = -0.196147 
+corr_pos[168] = -0.187928 
+corr_pos[169] = -0.131831 
+corr_pos[170] = -0.121351 
+corr_pos[171] = -0.110548 
+corr_pos[172] = -0.038951 
+corr_pos[173] = -0.025887 
+corr_pos[174] = -0.012501 

csaxs_bec/bec_ipython_client/plugins/flomni/flomni.py

@@ -309,6 +309,7 @@ class FlomniInitStagesMixin:
         else:
             print("Stopping.")
             return
+        dev.rtx.controller.feedback_disable()
         # positions for optics out and 50 mm distance to sample
         umv(dev.ftrackz, 4.73, dev.ftracky, 2.5170, dev.foptx, -14.3, dev.fopty, 3.87)
 
@@ -423,18 +424,18 @@ class FlomniSampleTransferMixin:
     def show_signal_strength_interferometer(self):
         dev.rtx.controller.show_signal_strength_interferometer()
 
-    def rt_feedback_disable(self):
+    def feedback_disable(self):
         self.device_manager.devices.rtx.controller.feedback_disable()
 
-    def rt_feedback_enable_with_reset(self):
+    def feedback_enable_with_reset(self):
         self.device_manager.devices.rtx.controller.feedback_enable_with_reset()
         self.rt_feedback_status()
 
-    def rt_feedback_enable_without_reset(self):
+    def feedback_enable_without_reset(self):
         self.device_manager.devices.rtx.controller.feedback_enable_without_reset()
         self.rt_feedback_status()
 
-    def rt_feedback_status(self):
+    def feedback_status(self):
         feedback_status = self.device_manager.devices.rtx.controller.feedback_is_running()
         if feedback_status == True:
             print("The rt feedback is \x1b[92mrunning\x1b[0m.")
@@ -454,7 +455,7 @@ class FlomniSampleTransferMixin:
 
         umv(dev.fsamroy, 0)
 
-        self.rt_feedback_disable()
+        self.feedback_disable()
 
         self.ensure_fheater_up()
 
@@ -1050,7 +1051,7 @@ class FlomniAlignmentMixin:
                 value = line.split(" ")[2]
                 name = line.split(" ")[0].split("[")[0]
                 if name == "corr_pos":
-                    corr_pos.append(float(value) / 1000)
+                    corr_pos.append(float(value))
                 elif name == "corr_angle":
                     corr_angle.append(float(value))
         print(
@@ -1141,7 +1142,7 @@ class Flomni(
                 fsamx_in = self._get_user_param_safe(dev.fsamx, "in")
                 if np.isclose(fsamx_in, dev.fsamx.readback.get(), 0.5):
                     print("Stopping alignment. Returning to fsamx in position.")
-                    self.rt_feedback_disable()
+                    self.feedback_disable()
                     umv(dev.fsamx, fsamx_in)
                 raise exc
 
@@ -1520,7 +1521,7 @@ class Flomni(
             angles = np.flip(angles)
         for angle in angles:
             self.progress["subtomo"] = subtomo_number
-            self.progress["subtomo_projection"] = angles.index(angle)
+            self.progress["subtomo_projection"] = np.where(angles == angle)[0][0]
             self.progress["subtomo_total_projections"] = 180 / self.tomo_angle_stepsize
             self.progress["projection"] = (subtomo_number - 1) * self.progress[
                 "subtomo_total_projections"
@@ -1700,7 +1701,7 @@ class Flomni(
     def _print_progress(self):
         print("\x1b[95mProgress report:")
         print(f"Tomo type: ....................... {self.progress['tomo_type']}")
-        print(f"Projection: ...................... {self.progress['projection']}")
+        print(f"Projection: ...................... {self.progress['projection']:.0f}")
         print(f"Total projections expected ....... {self.progress['total_projections']}")
         print(f"Angle: ........................... {self.progress['angle']}")
         print(f"Current subtomo: ................. {self.progress['subtomo']}")

csaxs_bec/bec_ipython_client/plugins/flomni/x_ray_eye_align.py

@@ -100,7 +100,7 @@ class XrayEyeAlign:
 
         self.flomni.laser_tracker_on()
 
-        self.flomni.rt_feedback_enable_with_reset()
+        self.flomni.feedback_enable_with_reset()
 
         # disable movement buttons
         self.movement_buttons_enabled = False
@@ -109,7 +109,7 @@ class XrayEyeAlign:
         epics_put("XOMNYI-XEYE-SAMPLENAME:0.DESC", sample_name)
 
         # this makes sure we are in a defined state
-        self.flomni.rt_feedback_disable()
+        self.flomni.feedback_disable()
 
         epics_put("XOMNYI-XEYE-PIXELSIZE:0", self.PIXEL_CALIBRATION)
 
@@ -143,13 +143,13 @@ class XrayEyeAlign:
                     self.movement_buttons_enabled = False
                     epics_put("XOMNYI-XEYE-SUBMIT:0", -1)  # disable submit button
 
-                    self.flomni.rt_feedback_disable()
+                    self.flomni.feedback_disable()
                     fsamx_in = self.flomni._get_user_param_safe("fsamx", "in")
                     umv(dev.fsamx, fsamx_in)
 
                     self.flomni.foptics_out()
 
-                    self.flomni.rt_feedback_disable()
+                    self.flomni.feedback_disable()
                     umv(dev.fsamx, fsamx_in - 0.25)
 
                     self.update_frame()
@@ -160,7 +160,7 @@ class XrayEyeAlign:
 
                     umv(dev.fsamx, fsamx_in)
                     time.sleep(0.5)
-                    self.flomni.rt_feedback_enable_with_reset()
+                    self.flomni.feedback_enable_with_reset()
 
                     self.update_frame()
                     self.send_message("Adjust sample height and submit center")
@@ -205,11 +205,11 @@ class XrayEyeAlign:
                 # allow movements, store movements to calculate center
                 _xrayeyalignmvy = epics_get("XOMNYI-XEYE-MVY:0")
                 if _xrayeyalignmvy != 0:
-                    self.flomni.rt_feedback_disable()
+                    self.flomni.feedback_disable()
                     umvr(dev.fsamy, _xrayeyalignmvy / 1000)
                     time.sleep(2)
                     epics_put("XOMNYI-XEYE-MVY:0", 0)
-                    self.flomni.rt_feedback_enable_with_reset()
+                    self.flomni.feedback_enable_with_reset()
                     self.update_frame()
             time.sleep(0.2)
 

csaxs_bec/bec_ipython_client/plugins/omny/__init__.py

@@ -0,0 +1 @@
+from .omny import OMNY

csaxs_bec/bec_ipython_client/plugins/omny/correction_omny_202204.txt

@@ -0,0 +1,715 @@
+corr_elements = 357 
+corr_angle[0] = 0.097400 
+corr_angle[1] = 0.603500 
+corr_angle[2] = 1.134200 
+corr_angle[3] = 1.625000 
+corr_angle[4] = 2.162200 
+corr_angle[5] = 2.700100 
+corr_angle[6] = 3.191600 
+corr_angle[7] = 3.714300 
+corr_angle[8] = 4.223200 
+corr_angle[9] = 4.730900 
+corr_angle[10] = 5.253300 
+corr_angle[11] = 5.743300 
+corr_angle[12] = 6.279200 
+corr_angle[13] = 6.782900 
+corr_angle[14] = 7.301200 
+corr_angle[15] = 7.808100 
+corr_angle[16] = 8.325300 
+corr_angle[17] = 8.859400 
+corr_angle[18] = 9.359400 
+corr_angle[19] = 9.887900 
+corr_angle[20] = 10.395400 
+corr_angle[21] = 10.930700 
+corr_angle[22] = 11.415400 
+corr_angle[23] = 11.928900 
+corr_angle[24] = 12.456900 
+corr_angle[25] = 12.955900 
+corr_angle[26] = 13.479000 
+corr_angle[27] = 13.982700 
+corr_angle[28] = 14.500900 
+corr_angle[29] = 15.016200 
+corr_angle[30] = 15.528000 
+corr_angle[31] = 16.053800 
+corr_angle[32] = 16.562800 
+corr_angle[33] = 17.076600 
+corr_angle[34] = 17.592400 
+corr_angle[35] = 18.094100 
+corr_angle[36] = 18.623800 
+corr_angle[37] = 19.118400 
+corr_angle[38] = 19.655000 
+corr_angle[39] = 20.143900 
+corr_angle[40] = 20.672200 
+corr_angle[41] = 21.171500 
+corr_angle[42] = 21.696300 
+corr_angle[43] = 22.215900 
+corr_angle[44] = 22.728900 
+corr_angle[45] = 23.233100 
+corr_angle[46] = 23.760000 
+corr_angle[47] = 24.267700 
+corr_angle[48] = 24.792100 
+corr_angle[49] = 25.287900 
+corr_angle[50] = 25.824600 
+corr_angle[51] = 26.321900 
+corr_angle[52] = 26.842600 
+corr_angle[53] = 27.337200 
+corr_angle[54] = 27.873500 
+corr_angle[55] = 28.373900 
+corr_angle[56] = 28.895900 
+corr_angle[57] = 29.404900 
+corr_angle[58] = 29.926700 
+corr_angle[59] = 30.439300 
+corr_angle[60] = 30.963700 
+corr_angle[61] = 31.460000 
+corr_angle[62] = 31.989500 
+corr_angle[63] = 32.489700 
+corr_angle[64] = 33.026400 
+corr_angle[65] = 33.516500 
+corr_angle[66] = 34.044000 
+corr_angle[67] = 34.547700 
+corr_angle[68] = 35.070800 
+corr_angle[69] = 35.578400 
+corr_angle[70] = 36.103200 
+corr_angle[71] = 36.603200 
+corr_angle[72] = 37.128200 
+corr_angle[73] = 37.645200 
+corr_angle[74] = 38.164300 
+corr_angle[75] = 38.662100 
+corr_angle[76] = 39.191000 
+corr_angle[77] = 39.693400 
+corr_angle[78] = 40.222500 
+corr_angle[79] = 40.719500 
+corr_angle[80] = 41.247000 
+corr_angle[81] = 41.755700 
+corr_angle[82] = 42.271300 
+corr_angle[83] = 42.767600 
+corr_angle[84] = 43.302200 
+corr_angle[85] = 43.818700 
+corr_angle[86] = 44.330000 
+corr_angle[87] = 44.835300 
+corr_angle[88] = 45.359800 
+corr_angle[89] = 45.867200 
+corr_angle[90] = 46.396200 
+corr_angle[91] = 46.895000 
+corr_angle[92] = 47.411500 
+corr_angle[93] = 47.915200 
+corr_angle[94] = 48.436600 
+corr_angle[95] = 48.946100 
+corr_angle[96] = 49.472300 
+corr_angle[97] = 49.979800 
+corr_angle[98] = 50.503300 
+corr_angle[99] = 51.008700 
+corr_angle[100] = 51.535000 
+corr_angle[101] = 52.036700 
+corr_angle[102] = 52.563700 
+corr_angle[103] = 53.063600 
+corr_angle[104] = 53.591700 
+corr_angle[105] = 54.091200 
+corr_angle[106] = 54.618900 
+corr_angle[107] = 55.116900 
+corr_angle[108] = 55.636100 
+corr_angle[109] = 56.143100 
+corr_angle[110] = 56.672200 
+corr_angle[111] = 57.172900 
+corr_angle[112] = 57.704600 
+corr_angle[113] = 58.204800 
+corr_angle[114] = 58.728600 
+corr_angle[115] = 59.239500 
+corr_angle[116] = 59.768400 
+corr_angle[117] = 60.268300 
+corr_angle[118] = 60.788800 
+corr_angle[119] = 61.289300 
+corr_angle[120] = 61.813300 
+corr_angle[121] = 62.310800 
+corr_angle[122] = 62.836700 
+corr_angle[123] = 63.353700 
+corr_angle[124] = 63.866600 
+corr_angle[125] = 64.377200 
+corr_angle[126] = 64.906600 
+corr_angle[127] = 65.414000 
+corr_angle[128] = 65.937100 
+corr_angle[129] = 66.429400 
+corr_angle[130] = 66.970000 
+corr_angle[131] = 67.459200 
+corr_angle[132] = 67.996400 
+corr_angle[133] = 68.499800 
+corr_angle[134] = 69.014500 
+corr_angle[135] = 69.509500 
+corr_angle[136] = 70.044000 
+corr_angle[137] = 70.543200 
+corr_angle[138] = 71.079400 
+corr_angle[139] = 71.579300 
+corr_angle[140] = 72.103500 
+corr_angle[141] = 72.607000 
+corr_angle[142] = 73.137100 
+corr_angle[143] = 73.633000 
+corr_angle[144] = 74.164500 
+corr_angle[145] = 74.660200 
+corr_angle[146] = 75.180600 
+corr_angle[147] = 75.674200 
+corr_angle[148] = 76.215400 
+corr_angle[149] = 76.718900 
+corr_angle[150] = 77.242300 
+corr_angle[151] = 77.752000 
+corr_angle[152] = 78.279300 
+corr_angle[153] = 78.780500 
+corr_angle[154] = 79.314900 
+corr_angle[155] = 79.424500 
+corr_angle[156] = 79.807000 
+corr_angle[157] = 80.336500 
+corr_angle[158] = 80.338700 
+corr_angle[159] = 80.835300 
+corr_angle[160] = 81.367100 
+corr_angle[161] = 81.376100 
+corr_angle[162] = 81.859000 
+corr_angle[163] = 82.382300 
+corr_angle[164] = 82.384000 
+corr_angle[165] = 82.881100 
+corr_angle[166] = 83.415000 
+corr_angle[167] = 83.421600 
+corr_angle[168] = 83.917100 
+corr_angle[169] = 84.439200 
+corr_angle[170] = 84.439300 
+corr_angle[171] = 84.947400 
+corr_angle[172] = 85.472700 
+corr_angle[173] = 85.987700 
+corr_angle[174] = 86.512400 
+corr_angle[175] = 87.009500 
+corr_angle[176] = 87.536500 
+corr_angle[177] = 88.035600 
+corr_angle[178] = 88.560100 
+corr_angle[179] = 89.057600 
+corr_angle[180] = 89.583200 
+corr_angle[181] = 90.090500 
+corr_angle[182] = 90.614600 
+corr_angle[183] = 91.119900 
+corr_angle[184] = 91.638300 
+corr_angle[185] = 92.153300 
+corr_angle[186] = 92.681600 
+corr_angle[187] = 93.181800 
+corr_angle[188] = 93.710900 
+corr_angle[189] = 94.206100 
+corr_angle[190] = 94.732700 
+corr_angle[191] = 95.226600 
+corr_angle[192] = 95.766400 
+corr_angle[193] = 96.259000 
+corr_angle[194] = 96.783400 
+corr_angle[195] = 97.283100 
+corr_angle[196] = 97.811500 
+corr_angle[197] = 98.323600 
+corr_angle[198] = 98.839400 
+corr_angle[199] = 99.350700 
+corr_angle[200] = 99.880200 
+corr_angle[201] = 100.378100 
+corr_angle[202] = 100.913300 
+corr_angle[203] = 101.405000 
+corr_angle[204] = 101.935700 
+corr_angle[205] = 102.426300 
+corr_angle[206] = 102.957300 
+corr_angle[207] = 103.456500 
+corr_angle[208] = 103.985100 
+corr_angle[209] = 104.490300 
+corr_angle[210] = 105.015100 
+corr_angle[211] = 105.518400 
+corr_angle[212] = 106.047400 
+corr_angle[213] = 106.551100 
+corr_angle[214] = 107.077100 
+corr_angle[215] = 107.575800 
+corr_angle[216] = 108.115200 
+corr_angle[217] = 108.598800 
+corr_angle[218] = 109.129100 
+corr_angle[219] = 109.626200 
+corr_angle[220] = 110.158400 
+corr_angle[221] = 110.661700 
+corr_angle[222] = 111.188600 
+corr_angle[223] = 111.695000 
+corr_angle[224] = 112.216400 
+corr_angle[225] = 112.720000 
+corr_angle[226] = 113.246200 
+corr_angle[227] = 113.757100 
+corr_angle[228] = 114.281900 
+corr_angle[229] = 114.780000 
+corr_angle[230] = 115.306800 
+corr_angle[231] = 115.799800 
+corr_angle[232] = 116.328400 
+corr_angle[233] = 116.829900 
+corr_angle[234] = 117.355400 
+corr_angle[235] = 117.858200 
+corr_angle[236] = 118.380600 
+corr_angle[237] = 118.893200 
+corr_angle[238] = 119.418200 
+corr_angle[239] = 119.921000 
+corr_angle[240] = 120.446100 
+corr_angle[241] = 120.953800 
+corr_angle[242] = 121.480300 
+corr_angle[243] = 121.977600 
+corr_angle[244] = 122.507100 
+corr_angle[245] = 122.996200 
+corr_angle[246] = 123.529600 
+corr_angle[247] = 124.032200 
+corr_angle[248] = 124.554800 
+corr_angle[249] = 125.057800 
+corr_angle[250] = 125.580800 
+corr_angle[251] = 126.090000 
+corr_angle[252] = 126.611600 
+corr_angle[253] = 127.127000 
+corr_angle[254] = 127.650900 
+corr_angle[255] = 128.153700 
+corr_angle[256] = 128.677200 
+corr_angle[257] = 129.170800 
+corr_angle[258] = 129.703000 
+corr_angle[259] = 130.194900 
+corr_angle[260] = 130.733600 
+corr_angle[261] = 131.228300 
+corr_angle[262] = 131.756900 
+corr_angle[263] = 132.263200 
+corr_angle[264] = 132.784700 
+corr_angle[265] = 133.296300 
+corr_angle[266] = 133.818800 
+corr_angle[267] = 134.318900 
+corr_angle[268] = 134.846800 
+corr_angle[269] = 135.344800 
+corr_angle[270] = 135.876000 
+corr_angle[271] = 136.372600 
+corr_angle[272] = 136.902700 
+corr_angle[273] = 137.397800 
+corr_angle[274] = 137.926800 
+corr_angle[275] = 138.428000 
+corr_angle[276] = 138.953700 
+corr_angle[277] = 139.461300 
+corr_angle[278] = 139.987800 
+corr_angle[279] = 140.492600 
+corr_angle[280] = 141.017900 
+corr_angle[281] = 141.524000 
+corr_angle[282] = 142.061200 
+corr_angle[283] = 142.545400 
+corr_angle[284] = 143.069900 
+corr_angle[285] = 143.568700 
+corr_angle[286] = 144.102200 
+corr_angle[287] = 144.596200 
+corr_angle[288] = 145.126400 
+corr_angle[289] = 145.626900 
+corr_angle[290] = 146.158700 
+corr_angle[291] = 146.662200 
+corr_angle[292] = 147.184700 
+corr_angle[293] = 147.692300 
+corr_angle[294] = 148.225900 
+corr_angle[295] = 148.716000 
+corr_angle[296] = 149.243400 
+corr_angle[297] = 149.739400 
+corr_angle[298] = 150.272400 
+corr_angle[299] = 150.762100 
+corr_angle[300] = 151.301800 
+corr_angle[301] = 151.796300 
+corr_angle[302] = 152.333500 
+corr_angle[303] = 152.833100 
+corr_angle[304] = 153.363600 
+corr_angle[305] = 153.862900 
+corr_angle[306] = 154.396100 
+corr_angle[307] = 154.895400 
+corr_angle[308] = 155.417700 
+corr_angle[309] = 155.916900 
+corr_angle[310] = 156.451600 
+corr_angle[311] = 156.942700 
+corr_angle[312] = 157.467600 
+corr_angle[313] = 157.970900 
+corr_angle[314] = 158.501100 
+corr_angle[315] = 158.999600 
+corr_angle[316] = 159.526100 
+corr_angle[317] = 160.028100 
+corr_angle[318] = 160.555800 
+corr_angle[319] = 161.067700 
+corr_angle[320] = 161.597300 
+corr_angle[321] = 162.091300 
+corr_angle[322] = 162.616600 
+corr_angle[323] = 163.107400 
+corr_angle[324] = 163.639100 
+corr_angle[325] = 164.139700 
+corr_angle[326] = 164.672500 
+corr_angle[327] = 165.176800 
+corr_angle[328] = 165.698600 
+corr_angle[329] = 166.205400 
+corr_angle[330] = 166.727300 
+corr_angle[331] = 167.238600 
+corr_angle[332] = 167.771500 
+corr_angle[333] = 168.265000 
+corr_angle[334] = 168.794800 
+corr_angle[335] = 169.293800 
+corr_angle[336] = 169.813300 
+corr_angle[337] = 170.320200 
+corr_angle[338] = 170.845100 
+corr_angle[339] = 171.344000 
+corr_angle[340] = 171.866200 
+corr_angle[341] = 172.375300 
+corr_angle[342] = 172.899400 
+corr_angle[343] = 173.404400 
+corr_angle[344] = 173.928500 
+corr_angle[345] = 174.430800 
+corr_angle[346] = 174.827800 
+corr_angle[347] = 175.460400 
+corr_angle[348] = 175.993100 
+corr_angle[349] = 176.492100 
+corr_angle[350] = 177.014200 
+corr_angle[351] = 177.512100 
+corr_angle[352] = 178.044200 
+corr_angle[353] = 178.643800 
+corr_angle[354] = 179.067200 
+corr_angle[355] = 179.571600 
+corr_angle[356] = 180.093700 
+corr_pos[0] = -0.814519 
+corr_pos[1] = -0.810675 
+corr_pos[2] = -0.806338 
+corr_pos[3] = -0.802047 
+corr_pos[4] = -0.797044 
+corr_pos[5] = -0.791712 
+corr_pos[6] = -0.786558 
+corr_pos[7] = -0.780781 
+corr_pos[8] = -0.774864 
+corr_pos[9] = -0.768674 
+corr_pos[10] = -0.762005 
+corr_pos[11] = -0.755474 
+corr_pos[12] = -0.748024 
+corr_pos[13] = -0.740730 
+corr_pos[14] = -0.732929 
+corr_pos[15] = -0.725011 
+corr_pos[16] = -0.716637 
+corr_pos[17] = -0.707676 
+corr_pos[18] = -0.698861 
+corr_pos[19] = -0.686245 
+corr_pos[20] = -0.676596 
+corr_pos[21] = -0.663643 
+corr_pos[22] = -0.655664 
+corr_pos[23] = -0.642249 
+corr_pos[24] = -0.633516 
+corr_pos[25] = -0.621402 
+corr_pos[26] = -0.612846 
+corr_pos[27] = -0.599978 
+corr_pos[28] = -0.592135 
+corr_pos[29] = -0.577949 
+corr_pos[30] = -0.570695 
+corr_pos[31] = -0.555560 
+corr_pos[32] = -0.549015 
+corr_pos[33] = -0.532162 
+corr_pos[34] = -0.524479 
+corr_pos[35] = -0.507848 
+corr_pos[36] = -0.500301 
+corr_pos[37] = -0.484361 
+corr_pos[38] = -0.477365 
+corr_pos[39] = -0.461751 
+corr_pos[40] = -0.455963 
+corr_pos[41] = -0.439438 
+corr_pos[42] = -0.436103 
+corr_pos[43] = -0.420587 
+corr_pos[44] = -0.417361 
+corr_pos[45] = -0.402270 
+corr_pos[46] = -0.400459 
+corr_pos[47] = -0.384745 
+corr_pos[48] = -0.385280 
+corr_pos[49] = -0.371217 
+corr_pos[50] = -0.373612 
+corr_pos[51] = -0.361838 
+corr_pos[52] = -0.365771 
+corr_pos[53] = -0.354641 
+corr_pos[54] = -0.360647 
+corr_pos[55] = -0.351446 
+corr_pos[56] = -0.359147 
+corr_pos[57] = -0.348696 
+corr_pos[58] = -0.359348 
+corr_pos[59] = -0.349962 
+corr_pos[60] = -0.360782 
+corr_pos[61] = -0.355040 
+corr_pos[62] = -0.367441 
+corr_pos[63] = -0.360511 
+corr_pos[64] = -0.372617 
+corr_pos[65] = -0.366120 
+corr_pos[66] = -0.377568 
+corr_pos[67] = -0.370362 
+corr_pos[68] = -0.380918 
+corr_pos[69] = -0.372553 
+corr_pos[70] = -0.381460 
+corr_pos[71] = -0.371828 
+corr_pos[72] = -0.379428 
+corr_pos[73] = -0.368465 
+corr_pos[74] = -0.374297 
+corr_pos[75] = -0.360340 
+corr_pos[76] = -0.365429 
+corr_pos[77] = -0.349168 
+corr_pos[78] = -0.351544 
+corr_pos[79] = -0.332514 
+corr_pos[80] = -0.333505 
+corr_pos[81] = -0.313316 
+corr_pos[82] = -0.313014 
+corr_pos[83] = -0.291107 
+corr_pos[84] = -0.287807 
+corr_pos[85] = -0.264483 
+corr_pos[86] = -0.260891 
+corr_pos[87] = -0.236646 
+corr_pos[88] = -0.231362 
+corr_pos[89] = -0.205833 
+corr_pos[90] = -0.200663 
+corr_pos[91] = -0.174834 
+corr_pos[92] = -0.171662 
+corr_pos[93] = -0.146200 
+corr_pos[94] = -0.142890 
+corr_pos[95] = -0.118389 
+corr_pos[96] = -0.112895 
+corr_pos[97] = -0.088879 
+corr_pos[98] = -0.084146 
+corr_pos[99] = -0.061625 
+corr_pos[100] = -0.054742 
+corr_pos[101] = -0.032741 
+corr_pos[102] = -0.026725 
+corr_pos[103] = -0.004827 
+corr_pos[104] = 0.002678 
+corr_pos[105] = 0.024418 
+corr_pos[106] = 0.031105 
+corr_pos[107] = 0.052334 
+corr_pos[108] = 0.060072 
+corr_pos[109] = 0.081470 
+corr_pos[110] = 0.088550 
+corr_pos[111] = 0.109685 
+corr_pos[112] = 0.116675 
+corr_pos[113] = 0.136298 
+corr_pos[114] = 0.142152 
+corr_pos[115] = 0.161986 
+corr_pos[116] = 0.166996 
+corr_pos[117] = 0.186466 
+corr_pos[118] = 0.190874 
+corr_pos[119] = 0.208729 
+corr_pos[120] = 0.212714 
+corr_pos[121] = 0.229992 
+corr_pos[122] = 0.232685 
+corr_pos[123] = 0.248748 
+corr_pos[124] = 0.249688 
+corr_pos[125] = 0.264768 
+corr_pos[126] = 0.264432 
+corr_pos[127] = 0.278801 
+corr_pos[128] = 0.278424 
+corr_pos[129] = 0.289656 
+corr_pos[130] = 0.289612 
+corr_pos[131] = 0.299899 
+corr_pos[132] = 0.299782 
+corr_pos[133] = 0.307473 
+corr_pos[134] = 0.309489 
+corr_pos[135] = 0.315999 
+corr_pos[136] = 0.317413 
+corr_pos[137] = 0.325060 
+corr_pos[138] = 0.325931 
+corr_pos[139] = 0.332544 
+corr_pos[140] = 0.332095 
+corr_pos[141] = 0.338738 
+corr_pos[142] = 0.337864 
+corr_pos[143] = 0.343909 
+corr_pos[144] = 0.342973 
+corr_pos[145] = 0.348449 
+corr_pos[146] = 0.346060 
+corr_pos[147] = 0.351949 
+corr_pos[148] = 0.349873 
+corr_pos[149] = 0.354969 
+corr_pos[150] = 0.352375 
+corr_pos[151] = 0.358388 
+corr_pos[152] = 0.354736 
+corr_pos[153] = 0.359539 
+corr_pos[154] = 0.354369 
+corr_pos[155] = 0.358549 
+corr_pos[156] = 0.353217 
+corr_pos[157] = 0.355795 
+corr_pos[158] = 0.351299 
+corr_pos[159] = 0.352922 
+corr_pos[160] = 0.346933 
+corr_pos[161] = 0.350201 
+corr_pos[162] = 0.343937 
+corr_pos[163] = 0.349304 
+corr_pos[164] = 0.344857 
+corr_pos[165] = 0.347471 
+corr_pos[166] = 0.335793 
+corr_pos[167] = 0.341109 
+corr_pos[168] = 0.330453 
+corr_pos[169] = 0.326576 
+corr_pos[170] = 0.320299 
+corr_pos[171] = 0.315348 
+corr_pos[172] = 0.300744 
+corr_pos[173] = 0.294366 
+corr_pos[174] = 0.280438 
+corr_pos[175] = 0.273618 
+corr_pos[176] = 0.259335 
+corr_pos[177] = 0.251464 
+corr_pos[178] = 0.237247 
+corr_pos[179] = 0.229092 
+corr_pos[180] = 0.214882 
+corr_pos[181] = 0.207363 
+corr_pos[182] = 0.193246 
+corr_pos[183] = 0.185868 
+corr_pos[184] = 0.173256 
+corr_pos[185] = 0.165378 
+corr_pos[186] = 0.153853 
+corr_pos[187] = 0.147031 
+corr_pos[188] = 0.135535 
+corr_pos[189] = 0.129435 
+corr_pos[190] = 0.119843 
+corr_pos[191] = 0.115062 
+corr_pos[192] = 0.107115 
+corr_pos[193] = 0.105182 
+corr_pos[194] = 0.099647 
+corr_pos[195] = 0.098162 
+corr_pos[196] = 0.094628 
+corr_pos[197] = 0.095257 
+corr_pos[198] = 0.084490 
+corr_pos[199] = 0.085389 
+corr_pos[200] = 0.074302 
+corr_pos[201] = 0.075265 
+corr_pos[202] = 0.063623 
+corr_pos[203] = 0.064487 
+corr_pos[204] = 0.052841 
+corr_pos[205] = 0.053559 
+corr_pos[206] = 0.042022 
+corr_pos[207] = 0.043321 
+corr_pos[208] = 0.032826 
+corr_pos[209] = 0.032277 
+corr_pos[210] = 0.022169 
+corr_pos[211] = 0.020740 
+corr_pos[212] = 0.010378 
+corr_pos[213] = 0.008668 
+corr_pos[214] = -0.001930 
+corr_pos[215] = -0.003882 
+corr_pos[216] = -0.014694 
+corr_pos[217] = -0.016629 
+corr_pos[218] = -0.026380 
+corr_pos[219] = -0.028069 
+corr_pos[220] = -0.037125 
+corr_pos[221] = -0.039429 
+corr_pos[222] = -0.047773 
+corr_pos[223] = -0.049261 
+corr_pos[224] = -0.056872 
+corr_pos[225] = -0.058756 
+corr_pos[226] = -0.065279 
+corr_pos[227] = -0.066859 
+corr_pos[228] = -0.073027 
+corr_pos[229] = -0.074253 
+corr_pos[230] = -0.079062 
+corr_pos[231] = -0.079800 
+corr_pos[232] = -0.084350 
+corr_pos[233] = -0.084805 
+corr_pos[234] = -0.088621 
+corr_pos[235] = -0.088437 
+corr_pos[236] = -0.092166 
+corr_pos[237] = -0.090769 
+corr_pos[238] = -0.093820 
+corr_pos[239] = -0.091724 
+corr_pos[240] = -0.094152 
+corr_pos[241] = -0.090866 
+corr_pos[242] = -0.092575 
+corr_pos[243] = -0.089239 
+corr_pos[244] = -0.089666 
+corr_pos[245] = -0.086864 
+corr_pos[246] = -0.087183 
+corr_pos[247] = -0.083974 
+corr_pos[248] = -0.083709 
+corr_pos[249] = -0.079848 
+corr_pos[250] = -0.078494 
+corr_pos[251] = -0.072782 
+corr_pos[252] = -0.069638 
+corr_pos[253] = -0.063004 
+corr_pos[254] = -0.058599 
+corr_pos[255] = -0.051737 
+corr_pos[256] = -0.046451 
+corr_pos[257] = -0.040238 
+corr_pos[258] = -0.034071 
+corr_pos[259] = -0.028578 
+corr_pos[260] = -0.021481 
+corr_pos[261] = -0.016346 
+corr_pos[262] = -0.009475 
+corr_pos[263] = -0.004141 
+corr_pos[264] = 0.002780 
+corr_pos[265] = 0.008455 
+corr_pos[266] = 0.015507 
+corr_pos[267] = 0.021672 
+corr_pos[268] = 0.029704 
+corr_pos[269] = 0.036662 
+corr_pos[270] = 0.044794 
+corr_pos[271] = 0.052031 
+corr_pos[272] = 0.061478 
+corr_pos[273] = 0.069150 
+corr_pos[274] = 0.078715 
+corr_pos[275] = 0.087785 
+corr_pos[276] = 0.098593 
+corr_pos[277] = 0.107863 
+corr_pos[278] = 0.118256 
+corr_pos[279] = 0.127631 
+corr_pos[280] = 0.139011 
+corr_pos[281] = 0.150077 
+corr_pos[282] = 0.162154 
+corr_pos[283] = 0.173758 
+corr_pos[284] = 0.186998 
+corr_pos[285] = 0.200111 
+corr_pos[286] = 0.214116 
+corr_pos[287] = 0.227291 
+corr_pos[288] = 0.240662 
+corr_pos[289] = 0.252955 
+corr_pos[290] = 0.265359 
+corr_pos[291] = 0.275995 
+corr_pos[292] = 0.287613 
+corr_pos[293] = 0.295789 
+corr_pos[294] = 0.306424 
+corr_pos[295] = 0.313027 
+corr_pos[296] = 0.322181 
+corr_pos[297] = 0.329313 
+corr_pos[298] = 0.338191 
+corr_pos[299] = 0.345243 
+corr_pos[300] = 0.353316 
+corr_pos[301] = 0.360491 
+corr_pos[302] = 0.367891 
+corr_pos[303] = 0.375027 
+corr_pos[304] = 0.380865 
+corr_pos[305] = 0.388354 
+corr_pos[306] = 0.395257 
+corr_pos[307] = 0.401478 
+corr_pos[308] = 0.408087 
+corr_pos[309] = 0.414083 
+corr_pos[310] = 0.420361 
+corr_pos[311] = 0.424284 
+corr_pos[312] = 0.429614 
+corr_pos[313] = 0.433888 
+corr_pos[314] = 0.438529 
+corr_pos[315] = 0.442302 
+corr_pos[316] = 0.445899 
+corr_pos[317] = 0.449014 
+corr_pos[318] = 0.451693 
+corr_pos[319] = 0.453795 
+corr_pos[320] = 0.455132 
+corr_pos[321] = 0.455438 
+corr_pos[322] = 0.455334 
+corr_pos[323] = 0.454055 
+corr_pos[324] = 0.451146 
+corr_pos[325] = 0.447259 
+corr_pos[326] = 0.442478 
+corr_pos[327] = 0.437520 
+corr_pos[328] = 0.432297 
+corr_pos[329] = 0.426442 
+corr_pos[330] = 0.418918 
+corr_pos[331] = 0.411040 
+corr_pos[332] = 0.402610 
+corr_pos[333] = 0.394491 
+corr_pos[334] = 0.383925 
+corr_pos[335] = 0.374590 
+corr_pos[336] = 0.363650 
+corr_pos[337] = 0.353143 
+corr_pos[338] = 0.339756 
+corr_pos[339] = 0.328074 
+corr_pos[340] = 0.315463 
+corr_pos[341] = 0.302641 
+corr_pos[342] = 0.288898 
+corr_pos[343] = 0.275134 
+corr_pos[344] = 0.260308 
+corr_pos[345] = 0.245582 
+corr_pos[346] = 0.233584 
+corr_pos[347] = 0.213812 
+corr_pos[348] = 0.196540 
+corr_pos[349] = 0.179844 
+corr_pos[350] = 0.161839 
+corr_pos[351] = 0.144160 
+corr_pos[352] = 0.124715 
+corr_pos[353] = 0.102123 
+corr_pos[354] = 0.085736 
+corr_pos[355] = 0.065743 
+corr_pos[356] = 0.044511 

csaxs_bec/bec_ipython_client/plugins/omny/gui_tools.py

@@ -0,0 +1,171 @@
+import builtins
+
+from bec_widgets.cli.client import BECDockArea
+
+# from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
+
+if builtins.__dict__.get("bec") is not None:
+    bec = builtins.__dict__.get("bec")
+    dev = builtins.__dict__.get("dev")
+    umv = builtins.__dict__.get("umv")
+    umvr = builtins.__dict__.get("umvr")
+
+
+class OMNYGuiToolsError(Exception):
+    pass
+
+
+class OMNYGuiTools:
+
+    def __init__(self, client):
+        self.gui = getattr(client, "gui", None)
+        self.gui_window = self.gui.windows['main'].widget
+        self.fig200 = None
+        self.fig201 = None
+        self.fig202 = None
+        self.fig203 = None
+        self.progressbar = None
+        self.text_box = None
+        self.idle_text_box = None
+
+    def omnygui_show_gui(self):
+        self.gui_window.show()
+
+    def omnygui_stop_gui(self):
+        self.gui_window.hide()
+
+    def _omnycam_parking(self):
+        self.omnygui_show_omnycam_parking()
+
+    def omnygui_show_omnycam_parking(self):
+        self.omnygui_show_gui()
+        if self.fig200 is None:
+            self._omnycam_clear()
+            self.fig200 = self.gui_window.add_dock(name="omnycam200").add_widget("BECImageWidget")
+            if self._omnycam_check_device_exists(dev.cam200):
+                fig = self.fig200.image("cam200")
+                fig.set_rotation(deg_90=3)
+                self.fig200.lock_aspect_ratio(True)
+            else:
+                print("Cannot open cam200. Device does not exist.")
+            self.fig203 = self.gui_window.add_dock(name="omnycam203").add_widget("BECImageWidget")
+            if self._omnycam_check_device_exists(dev.cam203):
+                fig = self.fig203.image("cam203")
+                fig.set_rotation(deg_90=3)
+                self.fig203.lock_aspect_ratio(True)
+            else:
+                print("Cannot open cam203. Device does not exist.")
+            try:
+                self.gui_window.remove_dock(name="default_figure")
+            except:
+                pass
+
+    def omnygui_remove_all_docks(self):
+        self.gui_window.clear_all()
+        self.fig200 = None
+        self.fig201 = None
+        self.fig202 = None
+        self.fig203 = None
+        self.progressbar = None
+        self.text_box = None
+        self.idle_text_box = None
+
+    def omnygui_idle(self):
+        self.omnygui_show_gui()
+        if self.idle_text_box is None:
+            self.omnygui_remove_all_docks()
+            self.idle_text_box = self.gui_window.add_dock(name="idle_text").add_widget("TextBox")
+            try:
+                self.gui_window.remove_dock(name="default_figure")
+            except:
+                pass
+        text = (
+            "<pre>"
+            + "    ,o888888o.           ,8.       ,8.          b.             8 `8.`8888.      ,8' \n"
+            + " . 8888     `88.        ,888.     ,888.         888o.          8  `8.`8888.    ,8'  \n"
+            + ",8 8888       `8b      .`8888.   .`8888.        Y88888o.       8   `8.`8888.  ,8'   \n"
+            + "88 8888        `8b    ,8.`8888. ,8.`8888.       .`Y888888o.    8    `8.`8888.,8'    \n"
+            + "88 8888         88   ,8'8.`8888,8^8.`8888.      8o. `Y888888o. 8     `8.`88888'     \n"
+            + "88 8888         88  ,8' `8.`8888' `8.`8888.     8`Y8o. `Y88888o8      `8. 8888      \n"
+            + "88 8888        ,8P ,8'   `8.`88'   `8.`8888.    8   `Y8o. `Y8888       `8 8888      \n"
+            + "`8 8888       ,8P ,8'     `8.`'     `8.`8888.   8      `Y8o. `Y8        8 8888      \n"
+            + " ` 8888     ,88' ,8'       `8        `8.`8888.  8         `Y8o.`        8 8888      \n"
+            + "    `8888888P'  ,8'         `         `8.`8888. 8            `Yo        8 8888      \n"
+            + "</pre>"
+        )
+        self.idle_text_box.set_html_text(text)
+
+    def _omnycam_clear(self):
+        self.omnygui_remove_all_docks()
+
+    def _omnycam_check_device_exists(self, device):
+        try:
+            device
+        except:
+            return False
+        else:
+            return True
+
+    def _omnycam_samplestage(self):
+        self.omnygui_show_omnycam_samplestage()
+
+    def omnygui_show_omnycam_samplestage(self):
+        self.omnygui_show_gui()
+        if self.fig201 is None:
+            self.omnygui_remove_all_docks()
+            self.fig201 = self.gui_window.add_dock(name="omnycam201").add_widget("BECImageWidget")
+            if self._omnycam_check_device_exists(dev.cam201):
+                fig = self.fig201.image("cam201")
+                fig.set_rotation(deg_90=3)
+                self.fig201.lock_aspect_ratio(True)
+            else:
+                print("Cannot open cam201. Device does not exist.")
+            self.fig202 = self.gui_window.add_dock(name="omnycam202").add_widget("BECImageWidget")
+            if self._omnycam_check_device_exists(dev.cam202):
+                fig = self.fig202.image("cam202")
+                fig.set_rotation(deg_90=3)
+                self.fig202.lock_aspect_ratio(True)
+            else:
+                print("Cannot open cam202. Device does not exist.")
+            try:
+                self.gui_window.remove_dock(name="default_figure")
+            except:
+                pass
+
+    def omnygui_show_progress(self):
+        self.omnygui_show_gui()
+        if self.progressbar is None:
+            self.omnygui_remove_all_docks()
+            # Add a new dock with a RingProgressBar widget
+            self.progressbar = self.gui_window.add_dock(name="progress").add_widget("RingProgressBar")
+            # Customize the size of the progress ring
+            self.progressbar.set_line_widths(20)
+            # Disable automatic updates and manually set the self.progressbar value
+            self.progressbar.enable_auto_updates(False)
+            # Set precision for the self.progressbar display
+            self.progressbar.set_precision(1)  # Display self.progressbar with one decimal places
+            # Setting multiple rigns with different values
+            self.progressbar.set_number_of_bars(3)
+            self.progressbar.rings[2].set_update("scan")
+            # Set the values of the rings to 50, 75, and 25 from outer to inner ring
+            # self.progressbar.set_value([50, 75])
+            # Add a new dock with a TextBox widget
+            self.text_box = self.gui_window.add_dock(name="progress_text").add_widget("TextBox")
+            try:
+                self.gui_window.remove_dock(name="default_figure")
+            except:
+                pass
+        self._omnygui_update_progress()
+
+    def _omnygui_update_progress(self):
+        if self.progressbar is not None:
+            progress = self.progress["projection"] / self.progress["total_projections"] * 100
+            subotmo_progress = (
+                self.progress["subtomo_projection"]
+                / self.progress["subtomo_total_projections"]
+                * 100
+            )
+            self.progressbar.set_value([progress, subotmo_progress])
+
+            text = f"Progress report:\n Tomo type: ....................... {self.progress['tomo_type']}\n Projection: ...................... {self.progress['projection']:.0f}\n Total projections expected ....... {self.progress['total_projections']}\n Angle: ........................... {self.progress['angle']}\n Current subtomo: ................. {self.progress['subtomo']}\n Current projection within subtomo: {self.progress['subtomo_projection']}\n Total projections per subtomo: ... {self.progress['subtomo_total_projections']}"
+            self.text_box.set_plain_text(text)

csaxs_bec/bec_ipython_client/plugins/omny/omny_alignment_mixin.py

@@ -0,0 +1,246 @@
+import time
+import numpy as np
+import os
+
+from rich import box
+from rich.console import Console
+from rich.table import Table
+
+from typeguard import typechecked
+from bec_lib import bec_logger
+
+logger = bec_logger.logger
+
+
+class OMNYAlignmentError(Exception):
+    pass
+
+
+class OMNYAlignmentMixin:
+    default_correction_file = "correction_omny_202204.txt"
+    default_correction_file_x = "correction_omny_202204_x.txt"
+
+    def reset_correction(self, use_default_correction=True):
+        """
+        Reset the correction to the default values.
+        If use_default_correction is False, the correction will be set to empty values.
+        Otherwise the default values will be loaded.
+
+        Args:
+            use_default_correction (bool, optional): If set to true, a call reset the correction to the default values. Defaults to True.
+        """
+        self.corr_pos_x = []
+        self.corr_angle_x = []
+        self.corr_pos_y = []
+        self.corr_angle_y = []
+        self.corr_pos_y_2 = []
+        self.corr_angle_y_2 = []
+
+        if use_default_correction:
+            try:
+                self.read_additional_correction_x(self.default_correction_file_x)
+                logger.info(f"Applying default x correction from {self.default_correction_file_x}")
+            except FileNotFoundError:
+                logger.warning(
+                    f"Could not find default correction file {self.default_correction_file_x}."
+                )
+                logger.warning("Not applying any correction.")
+            try:
+                self.read_additional_correction_y(self.default_correction_file)
+                logger.info(f"Applying default y correction from {self.default_correction_file}")
+            except FileNotFoundError:
+                logger.warning(
+                    f"Could not find default correction file {self.default_correction_file}."
+                )
+                logger.warning("Not applying any correction.")
+
+    def reset_tomo_alignment_fit(self):
+        self.client.delete_global_var("tomo_alignment_fit")
+
+    def read_alignment_offset(
+        self,
+        dir_path=os.path.expanduser("~/Data10/specES1/internal/"),
+        setup="omny",
+        use_vertical_default_values=True,
+    ):
+        """
+        Read the alignment offset from the given directory and set the global parameter
+        tomo_alignment_fit.
+
+        Args:
+            dir_path (str, optional): The directory to read the alignment offset from. Defaults to os.path.expanduser("~/Data10/specES1/internal/").
+        """
+        tomo_alignment_fit = np.zeros((2, 5))
+        with open(os.path.join(dir_path, "ptychotomoalign_Ax.txt"), "r") as file:
+            tomo_alignment_fit[0][0] = file.readline()
+
+        with open(os.path.join(dir_path, "ptychotomoalign_Bx.txt"), "r") as file:
+            tomo_alignment_fit[0][1] = file.readline()
+
+        with open(os.path.join(dir_path, "ptychotomoalign_Cx.txt"), "r") as file:
+            tomo_alignment_fit[0][2] = file.readline()
+
+        with open(os.path.join(dir_path, "ptychotomoalign_Ay.txt"), "r") as file:
+            tomo_alignment_fit[1][0] = file.readline()
+
+        with open(os.path.join(dir_path, "ptychotomoalign_By.txt"), "r") as file:
+            tomo_alignment_fit[1][1] = file.readline()
+
+        with open(os.path.join(dir_path, "ptychotomoalign_Cy.txt"), "r") as file:
+            tomo_alignment_fit[1][2] = file.readline()
+
+        with open(os.path.join(dir_path, "ptychotomoalign_Ay3.txt"), "r") as file:
+            tomo_alignment_fit[1][3] = file.readline()
+
+        with open(os.path.join(dir_path, "ptychotomoalign_Cy3.txt"), "r") as file:
+            tomo_alignment_fit[1][4] = file.readline()
+
+        print("New alignment parameters loaded:")
+        print(
+            f"X Amplitude {tomo_alignment_fit[0][0]}, "
+            f"X Phase {tomo_alignment_fit[0][1]}, "
+            f"X Offset {tomo_alignment_fit[0][2]}, "
+            f"Y Amplitude {tomo_alignment_fit[1][0]}, "
+            f"Y Phase {tomo_alignment_fit[1][1]}, "
+            f"Y Offset {tomo_alignment_fit[1][2]}, "
+            f"Y 3rd Order Amplitude {tomo_alignment_fit[1][3]}, "
+            f"Y 3rd Order Phase {tomo_alignment_fit[1][4]} ."
+        )
+
+        if use_vertical_default_values:
+            print(
+                f"Using default values for vertical alignment for setup {setup}. Optional: use_vertical_default_values=False"
+            )
+            if setup == "flomni":
+                tomo_alignment_fit[1][0] = 0
+                tomo_alignment_fit[1][1] = 0
+                tomo_alignment_fit[1][2] = 0
+                tomo_alignment_fit[1][3] = 0
+                tomo_alignment_fit[1][4] = 0
+            elif setup == "omny":
+                tomo_alignment_fit[1][0] = 2.588628
+                tomo_alignment_fit[1][1] = -2.385422
+                tomo_alignment_fit[1][2] = 0
+                tomo_alignment_fit[1][3] = 1.010583
+                tomo_alignment_fit[1][4] = -1.359157
+
+            print("Follwing parameters will be used:")
+            print(
+                f"X Amplitude {tomo_alignment_fit[0][0]}, "
+                f"X Phase {tomo_alignment_fit[0][1]}, "
+                f"X Offset {tomo_alignment_fit[0][2]}, "
+                f"Y Amplitude {tomo_alignment_fit[1][0]}, "
+                f"Y Phase {tomo_alignment_fit[1][1]}, "
+                f"Y Offset {tomo_alignment_fit[1][2]}, "
+                f"Y 3rd Order Amplitude {tomo_alignment_fit[1][3]}, "
+                f"Y 3rd Order Phase {tomo_alignment_fit[1][4]} ."
+            )
+
+        self.client.set_global_var("tomo_alignment_fit", tomo_alignment_fit.tolist())
+        # x amp, phase, offset, y amp, phase, offset, 3rd order amp, 3rd order phase
+        #  0 0    0 1    0 2     1 0    1 1    1 2       1 3           1 4
+
+    def get_alignment_offset(self, angle: float):
+        """
+        Compute the alignment offset for the given angle.
+
+        Args:
+            angle (float): The angle to compute the alignment offset for.
+
+        Returns:
+            tuple: The alignment offset in x, y and z direction.
+        """
+        tomo_alignment_fit = self.client.get_global_var("tomo_alignment_fit")
+        if tomo_alignment_fit is None:
+            print("Not applying any alignment offsets. No tomo alignment fit data available.\n")
+            return (0, 0, 0)
+
+        # x amp, phase, offset, y amp, phase, offset
+        #  0 0    0 1    0 2     1 0    1 1    1 2
+        correction_x = (
+            tomo_alignment_fit[0][0] * np.sin(np.radians(angle) + tomo_alignment_fit[0][1])
+            + tomo_alignment_fit[0][2]
+        )
+        correction_y = (
+            tomo_alignment_fit[1][0] * np.sin(np.radians(angle) + tomo_alignment_fit[1][1])
+            + tomo_alignment_fit[1][2]
+            + tomo_alignment_fit[1][3] * np.sin(3 * np.radians(angle) + tomo_alignment_fit[1][4])
+        )
+        correction_z = tomo_alignment_fit[0][0] * np.sin(
+            np.radians(angle + 90) + tomo_alignment_fit[0][1]
+        )
+
+        print(
+            f"Alignment offset x {correction_x}, y {correction_y}, z {correction_z} for angle"
+            f" {angle}\n"
+        )
+        return (correction_x, correction_y, correction_z)
+
+    def _read_correction_file(self, correction_file: str):
+        with open(correction_file, "r") as f:
+            num_elements = f.readline()
+            int_num_elements = int(num_elements.split(" ")[2])
+            corr_pos = []
+            corr_angle = []
+            for j in range(int_num_elements * 2):
+                line = f.readline()
+                value = line.split(" ")[2]
+                name = line.split(" ")[0].split("[")[0]
+                if name == "corr_pos":
+                    corr_pos.append(float(value))
+                elif name == "corr_angle":
+                    corr_angle.append(float(value))
+        print(
+            f"Loading default mirror correction from file {correction_file} containing {int_num_elements} elements."
+        )
+        # print(corr_pos)
+        return corr_pos, corr_angle
+
+    def read_additional_correction_x(self, correction_file: str):
+        self.corr_pos_x, self.corr_angle_x = self._read_correction_file(correction_file)
+
+    def read_additional_correction_y(self, correction_file: str):
+        self.corr_pos_y, self.corr_angle_y = self._read_correction_file(correction_file)
+
+    def read_additional_correction_y_2(self, correction_file: str):
+        self.corr_pos_y_2, self.corr_angle_y_2 = self._read_correction_file(correction_file)
+
+    def compute_additional_correction_x(self, angle):
+        return self._compute_additional_correction(angle, iteration="x1")
+
+    def compute_additional_correction_y(self, angle):
+        return self._compute_additional_correction(angle, iteration="y1")
+
+    def compute_additional_correction_y_2(self, angle):
+        return self._compute_additional_correction(angle, iteration="y2")
+
+    def _compute_additional_correction(self, angle, iteration="y1"):
+        if iteration == "x1":
+            corr_pos = self.corr_pos_x
+            corr_angle = self.corr_angle_x
+        elif iteration == "y1":
+            corr_pos = self.corr_pos_y
+            corr_angle = self.corr_angle_y
+        elif iteration == "y2":
+            corr_pos = self.corr_pos_y_2
+            corr_angle = self.corr_angle_y_2
+        if not corr_pos:
+            print(f"Not applying any additional correction {iteration}. No data available.\n")
+            return 0
+
+        # find index of closest angle
+        for j, _ in enumerate(corr_pos):
+            newangledelta = np.fabs(corr_angle[j] - angle)
+            if j == 0:
+                angledelta = newangledelta
+                additional_correction_shift = corr_pos[j]
+                continue
+
+            if newangledelta < angledelta:
+                additional_correction_shift = corr_pos[j]
+                angledelta = newangledelta
+
+        if additional_correction_shift == 0 and angle > corr_angle[-1]:
+            additional_correction_shift = corr_pos[-1]
+        print(f"Additional correction shift {iteration}: {additional_correction_shift}")
+        return additional_correction_shift

csaxs_bec/bec_ipython_client/plugins/omny/omny_general_tools.py

@@ -0,0 +1,153 @@
+import time
+import numpy as np
+import sys
+import termios
+import tty
+import fcntl
+import os
+import builtins
+
+from rich import box
+from rich.console import Console
+from rich.table import Table
+
+# from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
+
+if builtins.__dict__.get("bec") is not None:
+    bec = builtins.__dict__.get("bec")
+    dev = builtins.__dict__.get("dev")
+    umv = builtins.__dict__.get("umv")
+    umvr = builtins.__dict__.get("umvr")
+
+
+class OMNYToolsError(Exception):
+    pass
+
+
+class OMNYTools:
+
+    HEADER = "\033[95m"
+    OKBLUE = "\033[94m"
+    OKCYAN = "\033[96m"
+    OKGREEN = "\033[92m"
+    WARNING = "\033[93m"
+    FAIL = "\033[91m"
+    ENDC = "\033[0m"
+    BOLD = "\033[1m"
+    UNDERLINE = "\033[4m"
+
+    def __init__(self, client) -> None:
+        self.client = client
+
+    @staticmethod
+    def _get_user_param_safe(device, var):
+        param = dev[device].user_parameter
+        if not param or param.get(var) is None:
+            raise ValueError(f"Device {device} has no user parameter definition for {var}.")
+        return param.get(var)
+
+    def printgreen(self, string: str):
+        print(self.OKGREEN + string + self.ENDC)
+
+    def printgreenbold(self, string: str):
+        print(self.BOLD + self.OKGREEN + string + self.ENDC)
+
+    def yesno(self, message: str, default="none", autoconfirm=0) -> bool:
+        if autoconfirm and default == "y":
+            self.printgreen(message + " Automatically confirming default: yes")
+            return True
+        elif autoconfirm and default == "n":
+            self.printgreen(message + " Automatically confirming default: no")
+            return False
+        if default == "y":
+            message_ending = " [Y]/n? "
+        elif default == "n":
+            message_ending = " y/[N]? "
+        else:
+            message_ending = " y/n? "
+        while True:
+            user_input = input(self.OKBLUE + message + message_ending + self.ENDC)
+            if (
+                user_input == "Y" or user_input == "y" or user_input == "yes" or user_input == "Yes"
+            ) or (default == "y" and user_input == ""):
+                return True
+            if (
+                user_input == "N" or user_input == "n" or user_input == "no" or user_input == "No"
+            ) or (default == "n" and user_input == ""):
+                return False
+            else:
+                print("Please expicitely confirm y or n.")
+
+    def tweak_cursor(
+        self, dev1, step1: float, dev2="none", step2: float = "0", special_command="none"
+    ):
+        if dev1 not in dev.enabled_devices:
+            print(f"Device 1 {dev} is not in enabled devices.")
+            return
+        if dev2 not in dev.enabled_devices and dev2 != "none":
+            print(f"Device 2 {dev} is not in enabled devices.")
+            return
+        # Save the current terminal settings
+        fd = sys.stdin.fileno()
+        old_term = termios.tcgetattr(fd)
+        try:
+            # Set the terminal to raw mode to capture single key presses
+            tty.setraw(fd)
+            # Set stdin to non-blocking mode
+            old_flags = fcntl.fcntl(fd, fcntl.F_GETFL)
+            fcntl.fcntl(fd, fcntl.F_SETFL, old_flags | os.O_NONBLOCK)
+            print("Tweak Cursor." + self.BOLD + self.OKBLUE + "Press (q) to quit!\r" + self.ENDC)
+            while True:
+                try:
+                    # Read single character input
+                    key = sys.stdin.read(1)
+                    if key == "q":
+                        print("\n\rExiting tweak mode\r")
+                        break
+                    elif key == "\x1b":  # Escape sequences for arrow keys
+                        next1, next2 = sys.stdin.read(2)
+                        if next1 == "[":
+                            if next2 == "A":
+                                # print("up")
+                                if dev2 != "none":
+                                    umvr(dev2, step2)
+                                    if special_command != "none":
+                                        special_command()
+                            elif next2 == "B":
+                                # print(" down")
+                                if dev2 != "none":
+                                    umvr(dev2, -step2)
+                                    if special_command != "none":
+                                        special_command()
+                            elif next2 == "C":
+                                # print("right")
+                                umvr(dev1, step1)
+                                if special_command != "none":
+                                    special_command()
+                            elif next2 == "D":
+                                # print("left")
+                                umvr(dev1, -step1)
+                                if special_command != "none":
+                                    special_command()
+
+                    elif key == "+":
+                        step1 = step1 * 2
+                        if dev2 != "none":
+                            step2 = step2 * 2
+                        print(f"\rDouble step size. New step size: {step1}, {step2}\r")
+                    elif key == "-":
+                        step1 = step1 / 2
+                        if dev2 != "none":
+                            step2 = step2 / 2
+                        print(f"\rHalf step size. New step size: {step1}, {step2}\r")
+                except IOError:
+                    # No input available, keep looping
+                    pass
+
+                # Sleep for a short period to avoid high CPU usage
+                time.sleep(0.02)
+
+        finally:
+            # Restore the terminal to its original state
+            termios.tcsetattr(fd, termios.TCSADRAIN, old_term)
+            fcntl.fcntl(fd, fcntl.F_SETFL, old_flags)

csaxs_bec/bec_ipython_client/plugins/omny/omny_optics_mixin.py

@@ -0,0 +1,384 @@
+import time
+import numpy as np
+
+from rich import box
+from rich.console import Console
+from rich.table import Table
+
+from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_put, fshclose
+
+
+class OMNYError(Exception):
+    pass
+
+
+class OMNYOpticsMixin:
+    @staticmethod
+    def _get_user_param_safe(device, var):
+        param = dev[device].user_parameter
+        if not param or param.get(var) is None:
+            raise ValueError(f"Device {device} has no user parameter definition for {var}.")
+        return param.get(var)
+
+    def ooptics_in(self):
+        self.ofzp_in()
+        # ocs_in
+        self.oosa_in()
+
+        if "rtx" in dev and dev.rtx.enabled:
+            dev.rtx.controller.feedback_enable()
+
+        self.align.update_frame()
+
+        user_input = input(
+            "Is the direct beam gone on the xray eye? Do you see the cone of the FZP?"
+        )
+        if user_input == "y":
+            printf("Next oeye_out...\n")
+        else:
+            raise OMNYError("Failed to properly move in the Xray optics")
+
+    def _oeyey_mv(self, position):
+        # direction dependent speeds
+        if dev.oeyez.get().readback < position:
+            dev.oeyez.controller.socket_put_confirmed("axspeed[7]=15000")
+        else:
+            dev.oeyez.controller.socket_put_confirmed("axspeed[7]=10000")
+        umv(dev.oeyey, position)
+        dev.oeyez.controller.socket_put_confirmed("axspeed[7]=10000")
+
+    def oeye_out(self):
+        fshclose()
+        if self.OMNYTools.yesno("Did you move in the optics?"):
+            umv(dev.oeyez, -2)
+            self._oeyey_mv(-60.3)
+            # free camera
+            epics_put("XOMNYI-XEYE-ACQ:0", 2)
+        else:
+            raise OMNYError("The optics were not moved in. Please do so prior to eyey_out")
+        self.OMNYTools.printgreen("Oeye is out.")
+
+    def oeye_cam_in(self):
+        if dev.oeyez.get().readback < -80:
+            umv(dev.oeyez, -50)
+
+        if np.fabs(dev.oeyey.get().readback + 4.8) > 0.1:
+            self._oeyey_mv(-4.8)
+
+        if np.fabs(dev.oeyez.get().readback + 2) > 0.1 or np.fabs(dev.oeyex.get().readback) > 0.1:
+            umv(dev.oeyez, -2, dev.oeyex, 0)
+        # if still too close in z -- safety check
+        if np.fabs(dev.oeyez.get().readback + 2) > 0.1:
+            raise OMNYError("The oeye is too close in z for transfer. ERROR! Aborting.")
+        self.OMNYTools.printgreen("Oeye is at cam position.")
+
+    def _oeye_xray_is_in(self) -> bool:
+        omny_oeye_xray_inx = self._get_user_param_safe("oeyex", "xray_in")
+        omny_oeye_xray_iny = self._get_user_param_safe("oeyey", "xray_in")
+        omny_oeye_currentx = dev.oeyex.get().readback
+        omny_oeye_currenty = dev.oeyey.get().readback
+
+        if (
+            np.fabs(omny_oeye_currentx - omny_oeye_xray_inx) < 0.1
+            and np.fabs(omny_oeye_currenty - omny_oeye_xray_iny) < 0.1
+        ):
+            return True
+        else:
+            return False
+
+    def oeye_xray_in(self):
+        if self._oeye_xray_is_in():
+            pass
+        else:
+            # todo
+            #            self._otransfer_gripper_safe_xray_in_operation()
+            # if(!_oshield_is_ST_closed())
+            # {
+            #  printf("The shield of the sample stage is not closed. Aborting.\n")
+            #  exit
+            # }
+            omny_oeye_xray_inx = self._get_user_param_safe("oeyex", "xray_in")
+            omny_oeye_xray_iny = self._get_user_param_safe("oeyey", "xray_in")
+            omny_oeye_xray_inz = self._get_user_param_safe("oeyez", "xray_in")
+
+            self._oeyey_mv(omny_oeye_xray_iny)
+            omny_oeye_currenty = dev.oeyey.get().readback
+            if np.fabs(omny_oeye_currenty - omny_oeye_xray_iny) > 0.1:
+                raise OMNYError("The oeye did not move up.\n")
+            umv(dev.oeyex, omny_oeye_xray_inx, dev.oeyez, omny_oeye_xray_inz)
+            self.OMNYTools.printgreen("Oeye is at X-ray position.")
+
+            # some notes for the vis microscope:
+            # initial position for the vis light microscope
+            # do not open the shield when the microscope is at the vis mic position
+            # found eoeyx -45.13, z -84.9, y 0.64
+            # for a samy position of 2.8 with delta off
+            # the osa position should be in z around 7.4. in x it seems better
+            # around -0.6, where potentially xrays dont pass anymore
+            #
+
+    def _oosa_check_y(self):
+        omny_oosa_currenty = dev.oosay.get().readback
+        if np.fabs(omny_oosa_currenty - 0.9) > 0.05:
+            umv(dev.oosay, 0.9)
+        omny_oosa_currenty = dev.oosay.get().readback
+        if np.fabs(omny_oosa_currenty - 0.9) > 0.05:
+            raise OMNYError("oosay is not around 0.9. Aborting.")
+
+    def _oosa_to_move_corridor(self):
+        self._oosa_check_y()
+        dev.oosax.limits = [-3, 3.7]  # risk collision with shield
+        umv(dev.oosax, -2)
+        dev.oosax.read(cached=False)
+        omny_oosa_currentx = dev.oosax.get().readback
+        if np.fabs(omny_oosa_currentx + 2) > 0.1:
+            raise OMNYError("oosax did not reach target position. Not moving in z.\n")
+
+    def oosa_in(self):
+        self._oosa_check_y()
+        dev.oshield.read(cached=False)
+        omny_oshield_current = dev.oshield.get().readback
+        if omny_oshield_current < 15:
+            self._oshield_ST_close()
+        if self.near_field == False:
+            x_in_pos = self._get_user_param_safe("oosax", "far_field_in")
+            y_in_pos = self._get_user_param_safe("oosay", "far_field_in")
+            z_in_pos = self._get_user_param_safe("oosaz", "far_field_in")
+            print("OSA movement in far-field mode.")
+            dev.oosaz.read(cached=False)
+            omny_oosa_currentz = dev.oosaz.get().readback
+            if omny_oosa_currentz < 6.4:
+                self._oosa_to_move_corridor()
+            dev.oosaz.limits = [6.4, 6.6]
+            umv(dev.oosaz, z_in_pos)
+            umv(dev.oosax, x_in_pos)
+            umv(dev.oosay, y_in_pos)
+            #### For the 30 nm FZP 220 um we use this part
+            #  umv oosaz 6.5
+            #  umv oosax 3.2453
+            #  umv oosay 0.386015
+
+        if self.near_field == True:
+            x_in_pos = self._get_user_param_safe("oosax", "near_field_in")
+            y_in_pos = self._get_user_param_safe("oosay", "near_field_in")
+            z_in_pos = self._get_user_param_safe("oosaz", "near_field_in")
+            print("OSA movement in near-field mode.")
+            dev.oosaz.read(cached=False)
+            omny_oosa_currentz = dev.oosaz.get().readback
+            if omny_oosa_currentz > 0:
+                self._oosa_to_move_corridor()
+            dev.oosaz.limits = [-0.4, -0.6]
+            umv(dev.oosaz, z_in_pos)
+            umv(dev.oosax, x_in_pos)
+            omny_osamy_current = dev.osamy.get().readback
+            if omny_osamy_current < 3.25:
+                umv(dev.oosay, y_in_pos)
+            else:
+                raise OMNYError("Failed to move oosa in. osamy position is too large.")
+
+        self.OMNYTools.printgreen("OSA is in.")
+
+        # todo
+        # _omny_interferometer_align_tracking
+        # rt_feedback_enable
+
+    def oosa_out(self):
+        self._oosa_check_y()
+        dev.oshield.read(cached=False)
+        omny_oshield_current = dev.oshield.get().readback
+        if omny_oshield_current < 15:
+            self._oshield_ST_close()
+        omny_oosaz_current = dev.oosaz.get().readback
+        if self.near_field == False:
+            print("OSA movement in far-field mode.")
+            if omny_oosaz_current < 6.4:
+                self._oosa_to_move_corridor()
+            dev.oosaz.limits = [6.4, 6.6]
+            umv(dev.oosaz, 6.5)
+            umv(dev.oosax, -2)
+        if self.near_field == True:
+            print("OSA movement in near-field mode.")
+            if omny_oosaz_current > 0:
+                self._oosa_to_move_corridor()
+            dev.oosaz.limits = [-0.4, -0.6]
+            umv(dev.oosaz, -0.45)
+            umv(dev.oosax, -2)
+        # todo _omny_interferometer_align_tracking
+
+        self.OMNYTools.printgreen("OSA is out.")
+
+    def oosa_move_out_of_shield(self):
+        # todo: _omnycam_samplestage
+        self._oosa_check_y()
+        self._oosa_to_move_corridor()
+        omny_osamx_current = dev.osamx.get().readback
+        if np.fabs(omny_osamx_current) > 0.2:
+            umv(dev.osamx, 0)
+        omny_oosaz_current = dev.oosaz.get().readback
+        if omny_oosaz_current > 0.1:
+            dev.oosaz.limits = [-0.1, 0.1]
+            umv(dev.oosaz, 0)
+
+        self.OMNYTools.printgreen("OSA is out of shield.")
+
+    def ofzp_out(self):
+        if "rtx" in dev and dev.rtx.enabled:
+            dev.rtx.controller.feedback_disable()
+        y_out_pos = self._get_user_param_safe("ofzpy", "out")
+        if np.fabs(dev.ofzpy.get().readback - y_out_pos) > 0.02:
+            umv(dev.ofzpy, y_out_pos)
+        self.OMNYTools.printgreen("FZP at out position")
+
+    def ofzp_in(self):
+        if "rtx" in dev and dev.rtx.enabled:
+            dev.rtx.controller.feedback_disable()
+        x_in_pos = self._get_user_param_safe("ofzpx", "in")
+        y_in_pos = self._get_user_param_safe("ofzpy", "in")
+        if np.fabs(dev.ofzpy.get().readback - y_in_pos) > 0.02:
+            umv(dev.ofzpy, y_in_pos)
+
+        if np.fabs(dev.ofzpx.get().readback - x_in_pos) > 0.02:
+            umv(dev.ofzpx, x_in_pos)
+        self.OMNYTools.printgreen("FZP at in position")
+        # 220 mu FZP at ofzpz 31.8025 for eiger probe (about 2.4 mm propagation after focus)
+        # umv(dev.ofzpy, 0.7944)
+        # if np.fabs(dev.ofzpx.get().readback+0.4317)>0.05:
+        #     umv(dev.ofzpx, -0.4317)
+        # note the 220 fzp also works for near field 6.2 kev by just moving back osa and fzp
+        # ofzpz 24.8 leads to a 9.5 mm propagation distance.
+        # With the 220 mu FZP this gives 100 nm pixel recons
+        # for the oosa macro set near_field=1
+        # 170 mu FZP at 6.2 kev for large beam at ofzpz 31.8025 of about 58 mu diameter
+        # 120 mu FZP at ofzpz 28.1991
+
+        # 250 mu FZP 60 nm at 5.65 keV
+        # ofzpz 29.7 for propagation distance 2.2
+        # umv ofzpx -0.4457
+        # umv ofzpy 0.193630
+
+        # 150 um fzp, 60 nm, ofzpz 33.8 at 8.9 kev for propagation of 1.7 mm after focus
+        # umv ofzpx -0.756678
+        # umv ofzpy 0.193515
+
+        # 250 um 30 nm FZP upper right
+        # small abberrations, seems to give good results in weak objects
+        # ofzpx -0.609240
+        # umv ofzpy 0.118265
+        # 250 um 30 nm FZP lower right very aberated
+        # ofzpx -0.881935
+        # umv ofzpy 0.537050
+
+        # ofzpz 28.4027
+        # 5.30 mm prop at 8.9 keV, 45 nm pixel in near field
+
+        # ofzpz 33.103
+        # 0.6 mm prop at 8.9 kev far field 7 m flight tube at foptz
+
+        # ofzpz 49.4 is reachable just without interferometer swap
+        # which at 6.2 keV and 250 um diam, 30 nm should gives a propagation of 0.8 after focus
+        # and a beam size of 6 microns diamter
+        ###coordinates 30 nm FZP for comparing them
+        # not sure if that is really correct
+        # FZP 1 - FZP 2
+        #   FZP 5
+        # FZP 4 - FZP 1
+
+        # FZP
+        ##upper right
+        # umv ofzpx -0.6154 ofzpy 0.1183
+        # umv ocsx -0.6070 ocsy 0.0540
+
+        # lower right
+        # umv ofzpx -0.8341 ofzpy 0.5683
+        # umv ocsx -0.3880 ocsy -0.3960
+
+        # lower left
+        # umv ofzpx -0.3876 ofzpy 0.7902
+        # umv ocsx -0.8380 ocsy -0.6180
+
+        # upper left
+        # umv ofzpx -0.1678 ofzpy 0.3403
+        # umv ocsx -1.0550 ocsy -0.1680
+
+    def ofzp_info(self, mokev_val=-1, ofzpz_val=-1):
+        print(f"{ofzpz_val}")
+
+        if mokev_val == -1:
+            try:
+                mokev_val = dev.mokev.readback.get()
+            except:
+                print(
+                    "Device mokev does not exist. You can specify the energy in keV as an argument instead."
+                )
+                return
+        if ofzpz_val == -1:
+            ofzpz_val = dev.ofzpz.readback.get()
+        distance = 66 + 2.4 + 31.8025 - ofzpz_val
+        print(
+            f"\nThe sample is in a distance of \033[1m{distance:.1f} mm\033[0m from the 60 nm FZP.\n"
+        )
+        print(f"At the current energy of {mokev_val:.4f} keV we have following options:\n")
+
+        diameters = [80e-6, 100e-6, 120e-6, 150e-6, 170e-6, 200e-6, 220e-6, 250e-6]
+
+        console = Console()
+        table = Table(title="Outermost zone width \033[1m60 nm\033[0m", box=box.SQUARE)
+        table.add_column("Diameter", justify="center")
+        table.add_column("Focal distance", justify="center")
+        table.add_column("Current beam size", justify="center")
+
+        wavelength = 1.2398e-9 / mokev_val
+
+        for diameter in diameters:
+            outermost_zonewidth = 60e-9
+            focal_distance = diameter * outermost_zonewidth / wavelength * 1000
+            beam_size = -diameter / (focal_distance * 1000) * (focal_distance - distance) * 1e9
+            table.add_row(
+                f"{diameter*1e6:.2f} microns",
+                f"{focal_distance:.2f} mm",
+                f"{beam_size:.2f} microns",
+            )
+
+        console.print(table)
+
+        # 30 nm with additional spacer
+        distance = 53.84 + 0.6 + 33.1 - ofzpz_val
+        print(
+            f"\nThe sample is in a distance of \033[1m{distance:.1f} mm\033[0m from the 30 nm FZP.\n"
+        )
+
+        diameters = [150e-6, 250e-6]
+
+        console = Console()
+        table = Table(title="Outermost zone width \033[1m30 nm\033[0m", box=box.SQUARE)
+        table.add_column("Diameter", justify="center")
+        table.add_column("Focal distance", justify="center")
+        table.add_column("Current beam size", justify="center")
+
+        wavelength = 1.2398e-9 / mokev_val
+
+        for diameter in diameters:
+            outermost_zonewidth = 30e-9
+            focal_distance = diameter * outermost_zonewidth / wavelength * 1000
+            beam_size = -diameter / (focal_distance * 1000) * (focal_distance - distance) * 1e9
+            table.add_row(
+                f"{diameter*1e6:.2f} microns",
+                f"{focal_distance:.2f} mm",
+                f"{beam_size:.2f} microns",
+            )
+
+        console.print(table)
+
+        print(
+            "This function can be called with explicit energy and ofzpz position.\n Example: omny.ffzp_info(mokev_val=6.2, ofzpz_val=33.2)"
+        )
+
+        # from flomni
+        # oosaz_val = dev.oosaz.readback.get()
+
+        # print("\nOSA Information:")
+        # print(f"  Current fosaz {fosaz_val:.1f}")
+        # print(
+        #     f"  The OSA will collide with a normal OMNY pin at fosaz \033[1m{(33-fosaz_val):.1f}\033[0m"
+        # )
+        # print(f"  Remaining space: \033[1m{-fosaz_val+(33-foptz_val):.1f}\033[0m")

csaxs_bec/bec_ipython_client/plugins/omny/omny_rt.py

@@ -0,0 +1,241 @@
+import time
+import numpy as np
+import sys
+import termios
+import tty
+import fcntl
+import os
+
+
+from rich import box
+from rich.console import Console
+from rich.table import Table
+
+from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen, fshclose
+
+
+class OMNY_rt_clientError(Exception):
+    pass
+
+
+class OMNY_rt_client:
+    def __init__(self):
+        self.mirror_channel = -1
+        self.mirror_amplitutde_increase = 0
+        self.mirror_parameters = {}
+        for j in range(1, 9):
+            self.mirror_parameters[j] = dev.rtx.controller.get_mirror_parameters(j)
+
+    @staticmethod
+    def _get_user_param_safe(device, var):
+        param = dev[device].user_parameter
+        if not param or param.get(var) is None:
+            raise OMNY_rt_clientError(
+                f"Device {device} has no user parameter definition for {var}."
+            )
+        return param.get(var)
+
+    def _omny_interferometer_openloop_steps(self, channel, steps, amplitude):
+        dev.rtx.controller._omny_interferometer_openloop_steps(channel, steps, amplitude)
+
+    def interferometer_tweaking(self):
+        self._tweak_interferometer()
+
+    def _tweak_interferometer(self):
+        self.mirror_channel = -1
+
+        # Save the current terminal settings
+        fd = sys.stdin.fileno()
+        old_term = termios.tcgetattr(fd)
+
+        print("Ready to tweak the interferometer. Press q to quit.")
+        print("The arrows adjust directions.")
+        print("Numbers select the mirror aligner.")
+
+        try:
+            # Set the terminal to raw mode to capture single key presses
+            tty.setraw(fd)
+            # Set stdin to non-blocking mode
+            old_flags = fcntl.fcntl(fd, fcntl.F_GETFL)
+            fcntl.fcntl(fd, fcntl.F_SETFL, old_flags | os.O_NONBLOCK)
+            opt_mirrorname = "none"
+            max = 0
+            while True:
+                try:
+                    # Read single character input
+                    key = sys.stdin.read(1)
+
+                    if key == "q":
+                        self.mirror_amplitutde_increase = 0
+                        self.mirror_channel = -1
+                        print("\n\rExiting tweak mode\r")
+                        break
+                    elif key == "\x1b":  # Escape sequences for arrow keys
+                        next1, next2 = sys.stdin.read(2)
+
+                        if next1 == "[":
+                            printit = True
+                            if next2 == "A":
+                                # print("up")
+                                if self.mirror_channel != -1:
+                                    self._omny_interferometer_openloop_steps(
+                                        4,
+                                        -self.mirror_parameters[self.mirror_channel][
+                                            "opt_steps2_neg"
+                                        ],
+                                        self.mirror_parameters[self.mirror_channel][
+                                            "opt_amplitude2_neg"
+                                        ]
+                                        + self.mirror_amplitutde_increase,
+                                    )
+                            elif next2 == "B":
+                                # print(" down")
+                                if self.mirror_channel != -1:
+                                    self._omny_interferometer_openloop_steps(
+                                        4,
+                                        self.mirror_parameters[self.mirror_channel][
+                                            "opt_steps2_pos"
+                                        ],
+                                        self.mirror_parameters[self.mirror_channel][
+                                            "opt_amplitude2_pos"
+                                        ]
+                                        + self.mirror_amplitutde_increase,
+                                    )
+                            elif next2 == "C":
+                                # print("right")
+                                if self.mirror_channel != -1:
+                                    self._omny_interferometer_openloop_steps(
+                                        3,
+                                        -self.mirror_parameters[self.mirror_channel][
+                                            "opt_steps1_neg"
+                                        ],
+                                        self.mirror_parameters[self.mirror_channel][
+                                            "opt_amplitude1_neg"
+                                        ]
+                                        + self.mirror_amplitutde_increase,
+                                    )
+                            elif next2 == "D":
+                                # print("left")
+                                if self.mirror_channel != -1:
+                                    self._omny_interferometer_openloop_steps(
+                                        3,
+                                        self.mirror_parameters[self.mirror_channel][
+                                            "opt_steps1_pos"
+                                        ],
+                                        self.mirror_parameters[self.mirror_channel][
+                                            "opt_amplitude1_pos"
+                                        ]
+                                        + self.mirror_amplitutde_increase,
+                                    )
+                    elif key.isdigit() and 1 <= int(key) <= 8:
+                        self.mirror_channel = int(key)
+                        opt_mirrorname = self.mirror_parameters[self.mirror_channel][
+                            "opt_mirrorname"
+                        ]
+                        autostop = self.mirror_parameters[self.mirror_channel]["opt_signal_stop"]
+                        averaging_time = self.mirror_parameters[self.mirror_channel][
+                            "opt_averaging_time"
+                        ]
+                        print(
+                            f"\nSelected mirror channel {self.mirror_channel}: {opt_mirrorname}. Autostop {autostop}. Signal averaging time: {averaging_time}\r"
+                        )
+                        if int(key) == 6:
+                            dev.rtx.controller.laser_tracker_on()
+                        dev.rtx.controller._omny_interferometer_switch_channel(self.mirror_channel)
+                        max = 0
+                        printit = True
+                    elif key == "+":
+                        print("\nIncreasing voltage amplitudes by 100.\r")
+                        self.mirror_amplitutde_increase += 100
+                    elif key == "-":
+                        print("\nDecreasing voltage amplitudes by 100.\r")
+                        self.mirror_amplitutde_increase -= 100
+                    elif key == "a":
+                        if self.mirror_channel != -1:
+                            dev.rtx.controller._omny_interferometer_optimize(
+                                mirror_channel=self.mirror_channel, channel=3
+                            )
+                            dev.rtx.controller._omny_interferometer_optimize(
+                                mirror_channel=self.mirror_channel, channel=4
+                            )
+                            dev.rtx.controller._omny_interferometer_optimize(
+                                mirror_channel=self.mirror_channel, channel=3
+                            )
+                            dev.rtx.controller._omny_interferometer_optimize(
+                                mirror_channel=self.mirror_channel, channel=4
+                            )
+                    if self.mirror_channel != -1 and printit:
+                        printit = False
+                        signal = dev.rtx.controller._omny_interferometer_get_signalsample(
+                            self.mirror_parameters[self.mirror_channel]["opt_signalchannel"],
+                            self.mirror_parameters[self.mirror_channel]["opt_averaging_time"],
+                        )
+                        if signal > max:
+                            max = signal
+                        info_str = f"Channel {self.mirror_channel}, {opt_mirrorname}, Current signal: {signal:.0f}"
+                        filling = " " * (50 - len(info_str))
+                        # Calculate the number of filled and unfilled segments
+                        length = 30
+                        percentage = signal / max
+                        filled_length = int(length * percentage)
+                        unfilled_length = length - filled_length
+                        bar = "#" * filled_length + "-" * unfilled_length
+                        print(info_str + filling + "0 " + bar + f" {max:.0f}      (q)uit\r", end="")
+
+                except IOError:
+                    # No input available, keep looping
+                    pass
+
+                # Sleep for a short period to avoid high CPU usage
+                time.sleep(0.02)
+
+        finally:
+            # Restore the terminal to its original state
+            termios.tcsetattr(fd, termios.TCSADRAIN, old_term)
+            fcntl.fcntl(fd, fcntl.F_SETFL, old_flags)
+            dev.rtx.controller._omny_interferometer_switch_alloff()
+            self.mirror_channel = -1
+            self.mirror_amplitutde_increase = 0
+            dev.rtx.controller.show_signal_strength_interferometer()
+
+    def show_signal_strength_interferometer(self):
+        dev.rtx.controller.show_signal_strength_interferometer()
+
+    def omny_interferometer_align_incoupling_angle(self):
+        dev.rtx.controller.omny_interferometer_align_incoupling_angle()
+
+    def interferometer_tweak_otrack(self):
+        self.OMNYTools.tweak_cursor(
+            dev.otrackz,
+            0.1,
+            dev.otracky,
+            0.1,
+            special_command=dev.rtx.controller.laser_tracker_print_intensity_for_otrack_tweaking,
+        )
+
+    def feedback_enable_with_reset(self):
+        dev.rtx.controller.feedback_enable_with_reset()
+
+    def feedback_disable(self):
+        dev.rtx.controller.feedback_disable()
+
+    def feedback_status(self):
+        if dev.rtx.controller.feedback_is_running():
+            print("Feedback is running.")
+        else:
+            print("Feedback is NOT running.")
+
+    def laser_tracker_on(self):
+        dev.rtx.controller.laser_tracker_on()
+
+    def laser_tracker_off(self):
+        dev.rtx.controller.laser_tracker_off()
+
+    def laser_tracker_show_all(self):
+        dev.rtx.controller.laser_tracker_show_all()
+
+    def omny_interferometer_align_tracking(self):
+        dev.rtx.controller.omny_interferometer_align_tracking()
+
+    def laser_tracker_check_and_wait_for_signalstrength(self):
+        dev.rtx.controller.laser_tracker_check_and_wait_for_signalstrength()

csaxs_bec/bec_ipython_client/plugins/omny/x_ray_eye_align.py

@@ -0,0 +1,235 @@
+from __future__ import annotations
+
+import builtins
+import os
+import time
+from typing import TYPE_CHECKING
+
+from bec_lib import bec_logger
+
+from csaxs_bec.bec_ipython_client.plugins.cSAXS import epics_get, epics_put, fshopen
+
+logger = bec_logger.logger
+# import builtins to avoid linter errors
+bec = builtins.__dict__.get("bec")
+dev = builtins.__dict__.get("dev")
+umv = builtins.__dict__.get("umv")
+umvr = builtins.__dict__.get("umvr")
+
+if TYPE_CHECKING:
+    from bec_ipython_client.plugins.omny import OMNY
+
+
+class XrayEyeAlign:
+    # pixel calibration, multiply to get mm
+    PIXEL_CALIBRATION = 0.2 / 218  # .2 with binning
+
+    def __init__(self, client, omny: OMNY) -> None:
+        self.client = client
+        self.omny = omny
+        self.device_manager = client.device_manager
+        self.scans = client.scans
+        self.alignment_values = {}
+        self.omny.reset_correction()
+        self.omny.reset_tomo_alignment_fit()
+
+    def _reset_init_values(self):
+        self.shift_xy = [0, 0]
+        self._xray_fov_xy = [0, 0]
+
+    def save_frame(self):
+        epics_put("XOMNYI-XEYE-SAVFRAME:0", 1)
+
+    def update_frame(self):
+        epics_put("XOMNYI-XEYE-ACQDONE:0", 0)
+        # start live
+        epics_put("XOMNYI-XEYE-ACQ:0", 1)
+        # wait for start live
+        while epics_get("XOMNYI-XEYE-ACQDONE:0") == 0:
+            time.sleep(0.5)
+            print("waiting for live view to start...")
+        fshopen()
+
+        epics_put("XOMNYI-XEYE-ACQDONE:0", 0)
+
+        while epics_get("XOMNYI-XEYE-ACQDONE:0") == 0:
+            print("waiting for new frame...")
+            time.sleep(0.5)
+
+        time.sleep(0.5)
+        # stop live view
+        epics_put("XOMNYI-XEYE-ACQ:0", 0)
+        time.sleep(1)
+        # fshclose
+        print("got new frame")
+
+    def tomo_rotate(self, val: float):
+        # pylint: disable=undefined-variable
+        umv(self.device_manager.devices.osamroy, val)
+
+    def get_tomo_angle(self):
+        return self.device_manager.devices.osamroy.readback.get()
+
+    def update_fov(self, k: int):
+        self._xray_fov_xy[0] = max(epics_get(f"XOMNYI-XEYE-XWIDTH_X:{k}"), self._xray_fov_xy[0])
+        self._xray_fov_xy[1] = max(0, self._xray_fov_xy[0])
+
+    @property
+    def movement_buttons_enabled(self):
+        return [epics_get("XOMNYI-XEYE-ENAMVX:0"), epics_get("XOMNYI-XEYE-ENAMVY:0")]
+
+    @movement_buttons_enabled.setter
+    def movement_buttons_enabled(self, enabled: bool):
+        enabled = int(enabled)
+        epics_put("XOMNYI-XEYE-ENAMVX:0", enabled)
+        epics_put("XOMNYI-XEYE-ENAMVY:0", enabled)
+
+    def send_message(self, msg: str):
+        epics_put("XOMNYI-XEYE-MESSAGE:0.DESC", msg)
+
+    def align(self):
+        # reset shift xy and fov params
+        self._reset_init_values()
+
+        self.tomo_rotate(0)
+        epics_put("XOMNYI-XEYE-ANGLE:0", 0)
+
+        self.omny.oeye_xray_in()
+
+        self.omny.feedback_enable_with_reset()
+
+        # disable movement buttons
+        self.movement_buttons_enabled = False
+
+        sample_name = dev.omny_samples.get_sample_name_in_samplestage()
+        epics_put("XOMNYI-XEYE-SAMPLENAME:0.DESC", sample_name)
+
+        # this makes sure we are in a defined state
+        self.omny.feedback_disable()
+
+        epics_put("XOMNYI-XEYE-PIXELSIZE:0", self.PIXEL_CALIBRATION)
+
+        osamx_in = self.omny.OMNYTools._get_user_param_safe("osamx", "in")
+        umv(dev.osamx, osamx_in - 0.35)
+
+        self.omny.ofzp_in()
+        self.update_frame()
+
+        # enable submit buttons
+        self.movement_buttons_enabled = False
+        epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
+        epics_put("XOMNYI-XEYE-STEP:0", 0)
+        self.send_message("Submit center value of FZP.")
+
+        k = 0
+        while True:
+            if epics_get("XOMNYI-XEYE-SUBMIT:0") == 1:
+                val_x = epics_get(f"XOMNYI-XEYE-XVAL_X:{k}") / 2 * self.PIXEL_CALIBRATION  # in mm
+                self.alignment_values[k] = val_x
+                print(f"Clicked position {k}: x {self.alignment_values[k]}")
+                rtx_position = dev.rtx.readback.get() / 1000
+                print(f"Current rtx position {rtx_position}")
+                self.alignment_values[k] -= rtx_position
+                print(f"Corrected position {k}: x {self.alignment_values[k]}")
+
+                if k == 0:  # received center value of FZP
+                    self.send_message("please wait ...")
+                    self.movement_buttons_enabled = False
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)  # disable submit button
+
+                    self.omny.feedback_disable()
+                    osamx_in = self.omny.OMNYTools._get_user_param_safe("osamx", "in")
+                    umv(dev.osamx, osamx_in)
+
+                    self.omny.ofzp_out()
+
+                    self.update_frame()
+                    epics_put("XOMNYI-XEYE-RECBG:0", 1)
+                    while epics_get("XOMNYI-XEYE-RECBG:0") == 1:
+                        time.sleep(0.5)
+                        print("waiting for background frame...")
+
+                    umv(dev.osamx, osamx_in)
+                    time.sleep(0.5)
+                    self.omny.feedback_enable_with_reset()
+
+                    self.update_frame()
+                    self.send_message("Adjust sample height and submit center")
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
+                    self.movement_buttons_enabled = True
+
+                elif 1 <= k < 5:  # received sample center value at samroy 0 ... 315
+                    self.send_message("please wait ...")
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)
+                    self.movement_buttons_enabled = False
+
+                    umv(dev.rtx, 0)
+                    self.tomo_rotate(k * 45)
+                    epics_put("XOMNYI-XEYE-ANGLE:0", self.get_tomo_angle())
+                    self.update_frame()
+                    self.send_message("Submit sample center")
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", 0)
+                    epics_put("XOMNYI-XEYE-ENAMVX:0", 1)
+                    self.update_fov(k)
+
+                elif k == 5:  # received sample center value at samroy 270 and done
+                    self.send_message("done...")
+                    epics_put("XOMNYI-XEYE-SUBMIT:0", -1)  # disable submit button
+                    self.movement_buttons_enabled = False
+                    self.update_fov(k)
+                    break
+
+                k += 1
+                epics_put("XOMNYI-XEYE-STEP:0", k)
+
+            _xrayeyalignmvx = epics_get("XOMNYI-XEYE-MVX:0")
+            if _xrayeyalignmvx != 0:
+                umvr(dev.rtx, _xrayeyalignmvx)
+                print(f"Current rtx position {dev.rtx.readback.get() / 1000}")
+                epics_put("XOMNYI-XEYE-MVX:0", 0)
+                if k > 0:
+                    epics_put(f"XOMNYI-XEYE-STAGEPOSX:{k}", dev.rtx.readback.get() / 1000)
+                time.sleep(3)
+                self.update_frame()
+
+            if k < 2:
+                # allow movements, store movements to calculate center
+                _xrayeyalignmvy = epics_get("XOMNYI-XEYE-MVY:0")
+                if _xrayeyalignmvy != 0:
+                    self.omny.feedback_disable()
+                    umvr(dev.osamy, _xrayeyalignmvy / 1000)
+                    time.sleep(2)
+                    epics_put("XOMNYI-XEYE-MVY:0", 0)
+                    self.omny.feedback_enable_with_reset()
+                    self.update_frame()
+            time.sleep(0.2)
+
+        self.write_output()
+        fovx = self._xray_fov_xy[0] * self.PIXEL_CALIBRATION * 1000 / 2
+        fovy = self._xray_fov_xy[1] * self.PIXEL_CALIBRATION * 1000 / 2
+
+        self.tomo_rotate(0)
+
+        umv(dev.rtx, 0)
+
+        # free camera
+        epics_put("XOMNYI-XEYE-ACQ:0", 2)
+
+        print(
+            f"The largest field of view from the xrayeyealign was \nfovx = {fovx:.0f} microns, fovy"
+            f" = {fovy:.0f} microns"
+        )
+        print("Use the matlab routine to FIT the current alignment...")
+
+        print("Then LOAD ALIGNMENT PARAMETERS by running omny.read_alignment_offset()\n")
+
+    def write_output(self):
+        file = os.path.expanduser("~/Data10/specES1/internal/xrayeye_alignmentvalues")
+        if not os.path.exists(file):
+            os.makedirs(os.path.dirname(file), exist_ok=True)
+        with open(file, "w") as alignment_values_file:
+            alignment_values_file.write("angle\thorizontal\n")
+            for k in range(1, 6):
+                fovx_offset = self.alignment_values[0] - self.alignment_values[k]
+                print(f"Writing to file new alignment: number {k}, value x {fovx_offset}")
+                alignment_values_file.write(f"{(k-1)*45}\t{fovx_offset*1000}\n")

csaxs_bec/bec_ipython_client/startup/post_startup.py

@@ -62,7 +62,6 @@ bec._beamline_mixin._bl_info_register(OperatorInfo)
 bec._ip.prompts.username = _session_name
 bec._ip.prompts.status = 1
 
-
 # REGISTER BEAMLINE CHECKS
 from bec_lib.bl_conditions import (
     FastOrbitFeedbackCondition,

csaxs_bec/bec_ipython_client/startup/pre_startup.py

@@ -12,3 +12,10 @@ def extend_command_line_args(parser):
     parser.add_argument("--session", help="Session name", type=str, default="cSAXS")
 
     return parser
+
+
+# def get_config() -> ServiceConfig:
+#     """
+#     Create and return the service configuration.
+#     """
+#     return ServiceConfig(redis={"host": "localhost", "port": 6379})

csaxs_bec/bec_widgets/auto_updates/auto_updates.py

@@ -0,0 +1,63 @@
+from __future__ import annotations
+
+from typing import TYPE_CHECKING
+
+from bec_widgets.widgets.containers.auto_update.auto_updates import AutoUpdates
+
+if TYPE_CHECKING:  # pragma: no cover
+    from bec_lib.messages import ScanStatusMessage
+
+
+class cSAXSUpdate(AutoUpdates):
+
+    #######################################################################
+    ################# GUI Callbacks #######################################
+    #######################################################################
+
+    def on_start(self) -> None:
+        """
+        Procedure to run when the auto updates are enabled.
+        """
+        self.start_default_dock()
+
+    def on_stop(self) -> None:
+        """
+        Procedure to run when the auto updates are disabled.
+        """
+
+    def on_scan_open(self, msg: ScanStatusMessage) -> None:
+        """
+        Procedure to run when a scan starts.
+
+        Args:
+            msg (ScanStatusMessage): The scan status message.
+        """
+        if msg.scan_name == "line_scan" and msg.scan_report_devices:
+            return self.simple_line_scan(msg)
+        if msg.scan_name == "grid_scan" and msg.scan_report_devices:
+            return self.simple_grid_scan(msg)
+        if msg.scan_report_devices:
+            return self.best_effort(msg)
+        return None
+
+    def on_scan_closed(self, msg: ScanStatusMessage) -> None:
+        """
+        Procedure to run when a scan ends.
+
+        Args:
+            msg (ScanStatusMessage): The scan status message.
+        """
+
+    def on_scan_abort(self, msg: ScanStatusMessage) -> None:
+        """
+        Procedure to run when a scan is aborted.
+
+        Args:
+            msg (ScanStatusMessage): The scan status message.
+        """
+
+
+class cSAXSUpdateAlignment(AutoUpdates): ...
+
+
+class cSAXSUpdateScan(AutoUpdates): ...

csaxs_bec/bec_widgets/widgets/client.py

@@ -0,0 +1,75 @@
+# This file was automatically generated by generate_cli.py
+# type: ignore
+
+from __future__ import annotations
+
+from bec_lib.logger import bec_logger
+
+from bec_widgets.cli.rpc.rpc_base import RPCBase, rpc_call
+
+logger = bec_logger.logger
+
+# pylint: skip-file
+
+
+_Widgets = {
+    "OmnyAlignment": "OmnyAlignment",
+}
+
+
+class OmnyAlignment(RPCBase):
+    @property
+    @rpc_call
+    def enable_live_view(self):
+        """
+        None
+        """
+
+    @enable_live_view.setter
+    @rpc_call
+    def enable_live_view(self):
+        """
+        None
+        """
+
+    @property
+    @rpc_call
+    def user_message(self):
+        """
+        None
+        """
+
+    @user_message.setter
+    @rpc_call
+    def user_message(self):
+        """
+        None
+        """
+
+    @property
+    @rpc_call
+    def sample_name(self):
+        """
+        None
+        """
+
+    @sample_name.setter
+    @rpc_call
+    def sample_name(self):
+        """
+        None
+        """
+
+    @property
+    @rpc_call
+    def enable_move_buttons(self):
+        """
+        None
+        """
+
+    @enable_move_buttons.setter
+    @rpc_call
+    def enable_move_buttons(self):
+        """
+        None
+        """

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment.py

@@ -0,0 +1,139 @@
+
+
+from typing import TypedDict
+from bec_widgets.utils.error_popups import SafeSlot
+import os
+from bec_widgets.utils.bec_widget import BECWidget
+from bec_widgets.utils.ui_loader import UILoader
+from qtpy.QtWidgets import QWidget, QPushButton, QLineEdit, QLabel, QVBoxLayout
+from bec_qthemes import material_icon
+from bec_lib.logger import bec_logger
+
+logger = bec_logger.logger 
+
+
+# class OmnyAlignmentUIComponents(TypedDict):
+#     moveRightButton: QPushButton
+#     moveLeftButton: QPushButton
+#     moveUpButton: QPushButton
+#     moveDownButton: QPushButton
+#     image: Image
+
+
+class OmnyAlignment(BECWidget, QWidget):
+    USER_ACCESS = ["enable_live_view", "enable_live_view.setter", "user_message", "user_message.setter","sample_name", "sample_name.setter", "enable_move_buttons", "enable_move_buttons.setter"]
+    PLUGIN = True
+    ui_file = "./omny_alignment.ui"
+
+    def __init__(self, parent=None, **kwargs):
+        super().__init__(parent=parent, **kwargs)
+        
+        self._load_ui()
+
+    def _load_ui(self):
+        current_path = os.path.dirname(__file__)
+        self.ui = UILoader(self).loader(os.path.join(current_path, self.ui_file))
+        layout = QVBoxLayout()
+        layout.addWidget(self.ui)
+        self.setLayout(layout)
+
+        icon_options = {"size": (16, 16), "convert_to_pixmap": False}
+        self.ui.moveRightButton.setText("")
+        self.ui.moveRightButton.setIcon(
+            material_icon(icon_name="keyboard_arrow_right", **icon_options)
+        )
+
+        self.ui.moveLeftButton.setText("")
+        self.ui.moveLeftButton.setIcon(
+            material_icon(icon_name="keyboard_arrow_left", **icon_options)
+        )
+
+        self.ui.moveUpButton.setText("")
+        self.ui.moveUpButton.setIcon(
+            material_icon(icon_name="keyboard_arrow_up", **icon_options)
+        )
+
+        self.ui.moveDownButton.setText("")
+        self.ui.moveDownButton.setIcon(
+            material_icon(icon_name="keyboard_arrow_down", **icon_options)
+        )
+
+        self.ui.confirmButton.setText("OK")
+
+
+        self.ui.liveViewSwitch.enabled.connect(self.on_live_view_enabled)
+
+
+    @property
+    def enable_live_view(self):
+        return self.ui.liveViewSwitch.checked
+    
+    @enable_live_view.setter
+    def enable_live_view(self, enable:bool):
+        self.ui.liveViewSwitch.checked = enable
+
+
+    @property
+    def user_message(self):
+        return self.ui.messageLineEdit.text()
+    
+    @user_message.setter
+    def user_message(self, message:str):
+        self.ui.messageLineEdit.setText(message)
+
+    @property
+    def sample_name(self):
+        return self.ui.sampleLineEdit.text()
+    
+    @sample_name.setter
+    def sample_name(self, message:str):
+        self.ui.sampleLineEdit.setText(message)
+
+
+    @SafeSlot(bool)
+    def on_live_view_enabled(self, enabled:bool):
+        from bec_widgets.widgets.plots.image.image import Image
+        logger.info(f"Live view is enabled: {enabled}")
+        image: Image = self.ui.image
+        if enabled:
+            image.image("cam200")
+            return
+        
+        image.disconnect_monitor("cam200")
+
+
+
+    @property
+    def enable_move_buttons(self):
+        move_up:QPushButton = self.ui.moveUpButton
+        move_down:QPushButton = self.ui.moveDownButton
+        move_left:QPushButton = self.ui.moveLeftButton
+        move_right:QPushButton = self.ui.moveRightButton
+        return move_up.isEnabled() and move_down.isEnabled() and move_left.isEnabled() and move_right.isEnabled()
+    
+    @enable_move_buttons.setter
+    def enable_move_buttons(self, enabled:bool):
+        move_up:QPushButton = self.ui.moveUpButton
+        move_down:QPushButton = self.ui.moveDownButton
+        move_left:QPushButton = self.ui.moveLeftButton
+        move_right:QPushButton = self.ui.moveRightButton
+
+        move_up.setEnabled(enabled)
+        move_down.setEnabled(enabled)
+        move_left.setEnabled(enabled)
+        move_right.setEnabled(enabled)
+
+        
+
+
+
+
+if __name__ == "__main__":
+    from qtpy.QtWidgets import QApplication
+    import sys
+
+    app = QApplication(sys.argv)
+    widget = OmnyAlignment()
+
+    widget.show()
+    sys.exit(app.exec_())

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment.pyproject

@@ -0,0 +1 @@
+{'files': ['omny_alignment.py']}

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment.ui

@@ -0,0 +1,125 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>Form</class>
+ <widget class="QWidget" name="Form">
+  <property name="geometry">
+   <rect>
+    <x>0</x>
+    <y>0</y>
+    <width>988</width>
+    <height>821</height>
+   </rect>
+  </property>
+  <property name="windowTitle">
+   <string>Form</string>
+  </property>
+  <layout class="QGridLayout" name="gridLayout_3">
+   <item row="2" column="2">
+    <layout class="QGridLayout" name="gridLayout">
+     <item row="1" column="2">
+      <widget class="QPushButton" name="moveRightButton">
+       <property name="text">
+        <string>PushButton</string>
+       </property>
+      </widget>
+     </item>
+     <item row="1" column="0">
+      <widget class="QPushButton" name="moveLeftButton">
+       <property name="text">
+        <string>PushButton</string>
+       </property>
+      </widget>
+     </item>
+     <item row="0" column="1">
+      <widget class="QPushButton" name="moveUpButton">
+       <property name="text">
+        <string>Up</string>
+       </property>
+      </widget>
+     </item>
+     <item row="2" column="1">
+      <widget class="QPushButton" name="moveDownButton">
+       <property name="text">
+        <string>PushButton</string>
+       </property>
+      </widget>
+     </item>
+     <item row="1" column="1">
+      <widget class="QPushButton" name="confirmButton">
+       <property name="text">
+        <string>PushButton</string>
+       </property>
+      </widget>
+     </item>
+    </layout>
+   </item>
+   <item row="2" column="0">
+    <layout class="QGridLayout" name="gridLayout_2">
+     <item row="0" column="1">
+      <widget class="QLineEdit" name="sampleLineEdit"/>
+     </item>
+     <item row="1" column="1">
+      <widget class="QLineEdit" name="messageLineEdit"/>
+     </item>
+     <item row="0" column="0">
+      <widget class="QLabel" name="label">
+       <property name="text">
+        <string>Sample</string>
+       </property>
+      </widget>
+     </item>
+     <item row="1" column="0">
+      <widget class="QLabel" name="label_2">
+       <property name="text">
+        <string>Message</string>
+       </property>
+      </widget>
+     </item>
+    </layout>
+   </item>
+   <item row="1" column="0" colspan="3">
+    <widget class="Image" name="image">
+     <property name="enable_toolbar" stdset="0">
+      <bool>false</bool>
+     </property>
+     <property name="inner_axes" stdset="0">
+      <bool>false</bool>
+     </property>
+     <property name="monitor" stdset="0">
+      <string>cam200</string>
+     </property>
+     <property name="rotation" stdset="0">
+      <number>3</number>
+     </property>
+    </widget>
+   </item>
+   <item row="0" column="3">
+    <widget class="ToggleSwitch" name="liveViewSwitch"/>
+   </item>
+   <item row="0" column="2">
+    <widget class="QLabel" name="label_3">
+     <property name="text">
+      <string>Live View</string>
+     </property>
+     <property name="alignment">
+      <set>Qt::AlignmentFlag::AlignRight|Qt::AlignmentFlag::AlignTrailing|Qt::AlignmentFlag::AlignVCenter</set>
+     </property>
+    </widget>
+   </item>
+  </layout>
+ </widget>
+ <customwidgets>
+  <customwidget>
+   <class>Image</class>
+   <extends>QWidget</extends>
+   <header>image</header>
+  </customwidget>
+  <customwidget>
+   <class>ToggleSwitch</class>
+   <extends>QWidget</extends>
+   <header>toggle_switch</header>
+  </customwidget>
+ </customwidgets>
+ <resources/>
+ <connections/>
+</ui>

csaxs_bec/bec_widgets/widgets/omny_alignment/omny_alignment_plugin.py

@@ -0,0 +1,54 @@
+# Copyright (C) 2022 The Qt Company Ltd.
+# SPDX-License-Identifier: LicenseRef-Qt-Commercial OR BSD-3-Clause
+
+from qtpy.QtDesigner import QDesignerCustomWidgetInterface
+
+from bec_widgets.utils.bec_designer import designer_material_icon
+from csaxs_bec.bec_widgets.widgets.omny_alignment.omny_alignment import OmnyAlignment
+
+DOM_XML = """
+<ui language='c++'>
+    <widget class='OmnyAlignment' name='omny_alignment'>
+    </widget>
+</ui>
+"""
+
+
+class OmnyAlignmentPlugin(QDesignerCustomWidgetInterface):  # pragma: no cover
+    def __init__(self):
+        super().__init__()
+        self._form_editor = None
+
+    def createWidget(self, parent):
+        t = OmnyAlignment(parent)
+        return t
+
+    def domXml(self):
+        return DOM_XML
+
+    def group(self):
+        return ""
+
+    def icon(self):
+        return designer_material_icon(OmnyAlignment.ICON_NAME)
+
+    def includeFile(self):
+        return "omny_alignment"
+
+    def initialize(self, form_editor):
+        self._form_editor = form_editor
+
+    def isContainer(self):
+        return False
+
+    def isInitialized(self):
+        return self._form_editor is not None
+
+    def name(self):
+        return "OmnyAlignment"
+
+    def toolTip(self):
+        return "OmnyAlignment"
+
+    def whatsThis(self):
+        return self.toolTip()

csaxs_bec/bec_widgets/widgets/omny_alignment/register_omny_alignment.py

@@ -0,0 +1,15 @@
+def main():  # pragma: no cover
+    from qtpy import PYSIDE6
+
+    if not PYSIDE6:
+        print("PYSIDE6 is not available in the environment. Cannot patch designer.")
+        return
+    from PySide6.QtDesigner import QPyDesignerCustomWidgetCollection
+
+    from csaxs_bec.bec_widgets.widgets.omny_alignment.omny_alignment_plugin import OmnyAlignmentPlugin
+
+    QPyDesignerCustomWidgetCollection.addCustomWidget(OmnyAlignmentPlugin())
+
+
+if __name__ == "__main__":  # pragma: no cover
+    main()

csaxs_bec/deployment/device_server/startup.py

@@ -1,11 +0,0 @@
-import os
-
-
-def setup_epics_ca():
-    os.environ["EPICS_CA_AUTO_ADDR_LIST"] = "NO"
-    os.environ["EPICS_CA_ADDR_LIST"] = "129.129.122.255 sls-x12sa-cagw.psi.ch:5836"
-    os.environ["PYTHONIOENCODING"] = "latin1"
-
-
-def run():
-    setup_epics_ca()

csaxs_bec/deployments/device_server/startup.py

@@ -0,0 +1,11 @@
+import os
+
+
+def setup_epics_ca():
+    # os.environ["EPICS_CA_AUTO_ADDR_LIST"] = "NO"
+    # os.environ["EPICS_CA_ADDR_LIST"] = "129.129.122.255 sls-x12sa-cagw.psi.ch:5836"
+    os.environ["PYTHONIOENCODING"] = "latin1"
+
+
+def run():
+    setup_epics_ca()

csaxs_bec/device_configs/bec_device_config_sastt.yaml

@@ -17,7 +17,7 @@ bpm4i:
   softwareTrigger: false
 mokev:
   description: Monochromator energy in keV
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.EnergyKev
+  deviceClass: csaxs_bec.devices.epics.specMotors.EnergyKev
   deviceConfig:
     read_pv: X12SA-OP-MO:ROX2
   deviceTags:
@@ -29,7 +29,7 @@ mokev:
   softwareTrigger: false
 mcs:
   description: Mcs scalar card for transmission readout
-  deviceClass: csaxs_bec.devices.epics.devices.MCScSAXS
+  deviceClass: csaxs_bec.devices.epics.mcs_csaxs.MCScSAXS
   deviceConfig:
     prefix: 'X12SA-MCS:'
     mcs_config:
@@ -43,7 +43,7 @@ mcs:
   softwareTrigger: false
 eiger9m:
   description: Eiger9m HPC area detector 9M
-  deviceClass: csaxs_bec.devices.epics.devices.Eiger9McSAXS
+  deviceClass: csaxs_bec.devices.epics.eiger9m_csaxs.Eiger9McSAXS
   deviceConfig:
     prefix: 'X12SA-ES-EIGER9M:'
   deviceTags:
@@ -55,7 +55,7 @@ eiger9m:
   softwareTrigger: false
 ddg_detectors:
   description: DelayGenerator for detector triggering
-  deviceClass: csaxs_bec.devices.epics.devices.DelayGeneratorcSAXS
+  deviceClass: csaxs_bec.devices.epics.delay_generator_csaxs.DelayGeneratorcSAXS
   deviceConfig:
     prefix: 'delaygen:DG1:'
     ddg_config:
@@ -82,7 +82,7 @@ ddg_detectors:
   softwareTrigger: false
 ddg_mcs:
   description: DelayGenerator for mcs triggering
-  deviceClass: csaxs_bec.devices.epics.devices.DelayGeneratorcSAXS
+  deviceClass: csaxs_bec.devices.epics.delay_generator_csaxs.DelayGeneratorcSAXS
   deviceConfig:
     prefix: 'delaygen:DG2:'
     ddg_config:
@@ -111,7 +111,7 @@ ddg_mcs:
   softwareTrigger: false
 ddg_fsh:
   description: DelayGenerator for fast shutter control
-  deviceClass: csaxs_bec.devices.epics.devices.DelayGeneratorcSAXS
+  deviceClass: csaxs_bec.devices.epics.delay_generator_csaxs.DelayGeneratorcSAXS
   deviceConfig:
     prefix: 'delaygen:DG3:'
     ddg_config:
@@ -138,7 +138,7 @@ ddg_fsh:
   softwareTrigger: false
 falcon:
   description: Falcon detector x-ray fluoresence 
-  deviceClass: csaxs_bec.devices.epics.devices.FalconcSAXS
+  deviceClass: csaxs_bec.devices.epics.falcon_csaxs.FalconcSAXS
   deviceConfig:
     prefix: 'X12SA-SITORO:'
   deviceTags:
@@ -150,7 +150,7 @@ falcon:
   softwareTrigger: false
 pilatus_2:
   description: Pilatus2 HPC area detector 300k 
-  deviceClass: csaxs_bec.devices.epics.devices.PilatuscSAXS
+  deviceClass: csaxs_bec.devices.epics.pilatus_csaxs.PilatuscSAXS
   deviceConfig:
     prefix: 'X12SA-ES-PILATUS300K:'
   deviceTags:
@@ -162,7 +162,7 @@ pilatus_2:
   softwareTrigger: false
 samx:
   description: SGalil motor stage
-  deviceClass: csaxs_bec.devices.galil.SGalilMotor
+  deviceClass: csaxs_bec.devices.omny.galil.SGalilMotor
   deviceConfig:
     axis_Id: "E"
     host: '129.129.122.26'
@@ -180,7 +180,7 @@ samx:
   softwareTrigger: false
 samy:
   description: SGalil motor stage
-  deviceClass: csaxs_bec.devices.galil.SGalilMotor
+  deviceClass: csaxs_bec.devices.omny.galil.SGalilMotor
   deviceConfig:
     axis_Id: "C"
     host: '129.129.122.26'
@@ -198,7 +198,7 @@ samy:
   softwareTrigger: false
 micfoc:
   description: Focusing motor of Microscope stage
-  deviceClass: ophyd_devices.epics.devices.EpicsMotorEx
+  deviceClass: ophyd_devices.devices.EpicsMotorEx
   deviceConfig:
     prefix: X12SA-ES2-ES06
     motor_resolution: 0.00125
@@ -216,7 +216,7 @@ micfoc:
   softwareTrigger: false
 owis_samx:
   description: Owis motor stage samx
-  deviceClass: ophyd_devices.epics.devices.EpicsMotorEx
+  deviceClass: ophyd_devices.devices.EpicsMotorEx
   deviceConfig:
     prefix: X12SA-ES2-ES01
     motor_resolution: 0.00125
@@ -234,7 +234,7 @@ owis_samx:
   softwareTrigger: false
 owis_samy:
   description: Owis motor stage samx
-  deviceClass: ophyd_devices.epics.devices.EpicsMotorEx
+  deviceClass: ophyd_devices.devices.EpicsMotorEx
   deviceConfig:
     prefix: X12SA-ES2-ES02
     motor_resolution: 0.00125
@@ -252,7 +252,7 @@ owis_samy:
   softwareTrigger: false
 rotx:
   description: Rotation stage rotx
-  deviceClass: ophyd_devices.epics.devices.EpicsMotorEx
+  deviceClass: ophyd_devices.devices.EpicsMotorEx
   deviceConfig:
     prefix: X12SA-ES2-ES05
     motor_resolution: 0.0025
@@ -273,7 +273,7 @@ rotx:
   softwareTrigger: false
 roty:
   description: Rotation stage rotx
-  deviceClass: ophyd_devices.epics.devices.EpicsMotorEx
+  deviceClass: ophyd_devices.devices.EpicsMotorEx
   deviceConfig:
     prefix: X12SA-ES2-ES04
     motor_resolution: 0.0025

csaxs_bec/device_configs/e21125_lamni_config.yaml

@@ -3,7 +3,7 @@
 ############################################################
 leyex:
   description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.galil_ophyd.GalilMotor
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
   deviceConfig:
     axis_Id: G
     host: mpc2680.psi.ch
@@ -22,7 +22,7 @@ leyex:
     in: 14.117
 leyey:
   description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.galil_ophyd.GalilMotor
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
   deviceConfig:
     axis_Id: H
     host: mpc2680.psi.ch
@@ -42,7 +42,7 @@ leyey:
     out: 0.5
 loptx:
   description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.galil_ophyd.GalilMotor
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
   deviceConfig:
     axis_Id: E
     host: mpc2680.psi.ch
@@ -62,7 +62,7 @@ loptx:
     out: -0.699
 lopty:
   description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.galil_ophyd.GalilMotor
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
   deviceConfig:
     axis_Id: F
     host: mpc2680.psi.ch
@@ -82,7 +82,7 @@ lopty:
     out: 3.53
 loptz:
   description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.galil_ophyd.GalilMotor
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
   deviceConfig:
     axis_Id: D
     host: mpc2680.psi.ch
@@ -99,7 +99,7 @@ loptz:
   readoutPriority: baseline
 lsamrot:
   description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.galil_ophyd.GalilMotor
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
   deviceConfig:
     axis_Id: C
     host: mpc2680.psi.ch
@@ -116,7 +116,7 @@ lsamrot:
   readoutPriority: baseline
 lsamx:
   description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.galil_ophyd.GalilMotor
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
   deviceConfig:
     axis_Id: A
     host: mpc2680.psi.ch
@@ -135,7 +135,7 @@ lsamx:
     center: 8.768
 lsamy:
   description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.galil_ophyd.GalilMotor
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
   deviceConfig:
     axis_Id: B
     host: mpc2680.psi.ch
@@ -162,7 +162,7 @@ lsamy:
 ############################################################
 
 rtx:
-  deviceClass: csaxs_bec.devices.rt_lamni.rt_lamni_ophyd.RtLamniMotor
+  deviceClass: csaxs_bec.devices.omny.rt.rt_lamni_ophyd.RtLamniMotor
   deviceConfig:
     axis_Id: A
     device_access: true
@@ -179,7 +179,7 @@ rtx:
   enabled: true
   readOnly: False
 rty:
-  deviceClass: csaxs_bec.devices.rt_lamni.rt_lamni_ophyd.RtLamniMotor
+  deviceClass: csaxs_bec.devices.omny.rt.rt_lamni_ophyd.RtLamniMotor
   deviceConfig:
     axis_Id: B
     device_access: true
@@ -293,7 +293,7 @@ losaz:
 
 eiger1p5m:
   description: Eiger 1.5M in vacuum detector, in-house developed, PSI
-  deviceClass: csaxs_bec.devices.eiger1p5m_csaxs.eiger1p5m.Eiger1p5MDetector
+  deviceClass: csaxs_bec.devices.omny.eiger1p5m.Eiger1p5MDetector
   deviceConfig:
     device_access: true
   deviceTags:
@@ -504,7 +504,7 @@ sls_filling_pattern:
   readOnly: True
 sls_info:
   readoutPriority: on_request
-  deviceClass: ophyd_devices.sls_devices.sls_devices.SLSInfo
+  deviceClass: ophyd_devices.devices.sls_devices.SLSInfo
   deviceConfig:
   deviceTags:
   - SLS status
@@ -537,7 +537,7 @@ sls_machine_status:
   readOnly: True
 sls_operator:
   readoutPriority: on_request
-  deviceClass: ophyd_devices.sls_devices.sls_devices.SLSOperatorMessages
+  deviceClass: ophyd_devices.devices.sls_devices.SLSOperatorMessages
   deviceConfig:
     auto_monitor: true
     read_pv: ARIDI-BPM:OFB-MODE
@@ -802,7 +802,7 @@ bm5try:
   softwareTrigger: false
 bpm1:
   description: 'XBPM 1: Somewhere around mono (VME)'
-  deviceClass: csaxs_bec.devices.epics.devices.XbpmBase.XbpmCsaxsOp
+  deviceClass: csaxs_bec.devices.epics.XbpmBase.XbpmCsaxsOp
   deviceConfig:
     prefix: 'X12SA-OP-BPM2:'
   deviceTags:
@@ -824,7 +824,7 @@ bpm1i:
   softwareTrigger: false
 bpm2:
   description: 'XBPM 2: Somewhere around mono (VME)'
-  deviceClass: csaxs_bec.devices.epics.devices.XbpmBase.XbpmCsaxsOp
+  deviceClass: csaxs_bec.devices.epics.XbpmBase.XbpmCsaxsOp
   deviceConfig:
     prefix: 'X12SA-OP-BPM2:'
   deviceTags:
@@ -1187,7 +1187,7 @@ dtpush:
   softwareTrigger: false
 dtth:
   description: Detector tower tilt rotation
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.PmDetectorRotation
+  deviceClass: csaxs_bec.devices.epics.specMotors.PmDetectorRotation
   deviceConfig:
     prefix: X12SA-ES1-DETT:ROX1
   deviceTags:
@@ -1462,7 +1462,7 @@ fttrz:
   softwareTrigger: false
 idgap:
   description: Undulator gap size [mm]
-  deviceClass: csaxs_bec.devices.epics.devices.InsertionDevice
+  deviceClass: csaxs_bec.devices.epics.InsertionDevice.InsertionDevice
   deviceConfig:
     prefix: X12SA-ID
   deviceTags:
@@ -1561,7 +1561,7 @@ mitry3:
   softwareTrigger: false
 mobd:
   description: Monochromator bender virtual motor
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.PmMonoBender
+  deviceClass: csaxs_bec.devices.epics.specMotors.PmMonoBender
   deviceConfig:
     prefix: 'X12SA-OP-MO:'
   deviceTags:
@@ -1616,7 +1616,7 @@ mobddi:
   softwareTrigger: false
 mokev:
   description: Monochromator energy in keV
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.EnergyKev
+  deviceClass: csaxs_bec.devices.epics.specMotors.EnergyKev
   deviceConfig:
     read_pv: X12SA-OP-MO:ROX2
   deviceTags:
@@ -1671,7 +1671,7 @@ moroll2:
   softwareTrigger: false
 moth1:
   description: Monochromator Theta 1
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.MonoTheta1
+  deviceClass: csaxs_bec.devices.epics.specMotors.MonoTheta1
   deviceConfig:
     read_pv: X12SA-OP-MO:ROX1
   deviceTags:
@@ -1693,7 +1693,7 @@ moth1e:
   softwareTrigger: false
 moth2:
   description: Monochromator Theta 2
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.MonoTheta2
+  deviceClass: csaxs_bec.devices.epics.specMotors.MonoTheta2
   deviceConfig:
     read_pv: X12SA-OP-MO:ROX2
   deviceTags:
@@ -1812,17 +1812,17 @@ sec:
   onFailure: buffer
   readoutPriority: baseline
   softwareTrigger: false
-sl0h:
-  description: FrontEnd slit virtual movement
-  deviceClass: ophyd_devices.epics.devices.SlitH
-  deviceConfig:
-    prefix: 'X12SA-FE-SH1:'
-  deviceTags:
-  - epicsDevice
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
+# sl0h:
+#   description: FrontEnd slit virtual movement
+#   deviceClass: ophyd_devices.devices.SlitH
+#   deviceConfig:
+#     prefix: 'X12SA-FE-SH1:'
+#   deviceTags:
+#   - epicsDevice
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
 sl0trxi:
   description: FrontEnd slit inner blade movement
   deviceClass: ophyd.EpicsMotor
@@ -1845,17 +1845,17 @@ sl0trxo:
   onFailure: buffer
   readoutPriority: baseline
   softwareTrigger: false
-sl1h:
-  description: OpticsHutch slit virtual movement
-  deviceClass: ophyd_devices.epics.devices.SlitH
-  deviceConfig:
-    prefix: 'X12SA-OP-SH1:'
-  deviceTags:
-  - epicsDevice
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
+# sl1h:
+#   description: OpticsHutch slit virtual movement
+#   deviceClass: ophyd_devices.devices.SlitH
+#   deviceConfig:
+#     prefix: 'X12SA-OP-SH1:'
+#   deviceTags:
+#   - epicsDevice
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
 sl1trxi:
   description: OpticsHutch slit inner blade movement
   deviceClass: ophyd.EpicsMotor
@@ -1900,28 +1900,28 @@ sl1tryt:
   onFailure: buffer
   readoutPriority: baseline
   softwareTrigger: false
-sl1v:
-  description: OpticsHutch slit virtual movement
-  deviceClass: ophyd_devices.epics.devices.SlitV
-  deviceConfig:
-    prefix: 'X12SA-OP-SV1:'
-  deviceTags:
-  - epicsDevice
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-sl2h:
-  description: OpticsHutch slit 2 virtual movement
-  deviceClass: ophyd_devices.epics.devices.SlitH
-  deviceConfig:
-    prefix: 'X12SA-OP-SH2:'
-  deviceTags:
-  - epicsDevice
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
+# sl1v:
+#   description: OpticsHutch slit virtual movement
+#   deviceClass: ophyd_devices.devices.SlitV
+#   deviceConfig:
+#     prefix: 'X12SA-OP-SV1:'
+#   deviceTags:
+#   - epicsDevice
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# sl2h:
+#   description: OpticsHutch slit 2 virtual movement
+#   deviceClass: ophyd_devices.devices.SlitH
+#   deviceConfig:
+#     prefix: 'X12SA-OP-SH2:'
+#   deviceTags:
+#   - epicsDevice
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
 sl2trxi:
   description: OpticsHutch slit 2 inner blade movement
   deviceClass: ophyd.EpicsMotor
@@ -1966,72 +1966,72 @@ sl2tryt:
   onFailure: buffer
   readoutPriority: baseline
   softwareTrigger: false
-sl2v:
-  description: OpticsHutch slit 2 virtual movement
-  deviceClass: ophyd_devices.epics.devices.SlitV
-  deviceConfig:
-    prefix: 'X12SA-OP-SV2:'
-  deviceTags:
-  - epicsDevice
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-strox:
-  description: Girder virtual pitch
-  deviceClass: ophyd_devices.epics.devices.GirderMotorPITCH
-  deviceConfig:
-    prefix: X12SA-HG
-  deviceTags:
-  - beamlineMotor
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-stroy:
-  description: Girder virtual yaw
-  deviceClass: ophyd_devices.epics.devices.GirderMotorYAW
-  deviceConfig:
-    prefix: X12SA-HG
-  deviceTags:
-  - beamlineMotor
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-stroz:
-  description: Girder virtual roll
-  deviceClass: ophyd_devices.epics.devices.GirderMotorROLL
-  deviceConfig:
-    prefix: X12SA-HG
-  deviceTags:
-  - beamlineMotor
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-sttrx:
-  description: Girder X translation
-  deviceClass: ophyd_devices.epics.devices.GirderMotorX1
-  deviceConfig:
-    prefix: X12SA-HG
-  deviceTags:
-  - beamlineMotor
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-sttry:
-  description: Girder Y translation
-  deviceClass: ophyd_devices.epics.devices.GirderMotorY1
-  deviceConfig:
-    prefix: X12SA-HG
-  deviceTags:
-  - beamlineMotor
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
+# sl2v:
+#   description: OpticsHutch slit 2 virtual movement
+#   deviceClass: ophyd_devices.devices.SlitV
+#   deviceConfig:
+#     prefix: 'X12SA-OP-SV2:'
+#   deviceTags:
+#   - epicsDevice
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# strox:
+#   description: Girder virtual pitch
+#   deviceClass: ophyd_devices.devices.GirderMotorPITCH
+#   deviceConfig:
+#     prefix: X12SA-HG
+#   deviceTags:
+#   - beamlineMotor
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# stroy:
+#   description: Girder virtual yaw
+#   deviceClass: ophyd_devices.devices.GirderMotorYAW
+#   deviceConfig:
+#     prefix: X12SA-HG
+#   deviceTags:
+#   - beamlineMotor
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# stroz:
+#   description: Girder virtual roll
+#   deviceClass: ophyd_devices.devices.GirderMotorROLL
+#   deviceConfig:
+#     prefix: X12SA-HG
+#   deviceTags:
+#   - beamlineMotor
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# sttrx:
+#   description: Girder X translation
+#   deviceClass: ophyd_devices.devices.GirderMotorX1
+#   deviceConfig:
+#     prefix: X12SA-HG
+#   deviceTags:
+#   - beamlineMotor
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# sttry:
+#   description: Girder Y translation
+#   deviceClass: ophyd_devices.devices.GirderMotorY1
+#   deviceConfig:
+#     prefix: X12SA-HG
+#   deviceTags:
+#   - beamlineMotor
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
 transd:
   description: Transmission diode
   deviceClass: ophyd.EpicsSignalRO

csaxs_bec/device_configs/epics_devices_config.yaml

@@ -0,0 +1,50 @@
+ddg_detectors:
+  description: DelayGenerator for detector triggering
+  deviceClass: csaxs_bec.devices.epics.delay_generator_csaxs.DelayGeneratorcSAXS
+  deviceConfig:
+    prefix: 'X12SA-CPCL-DDG3:'
+    ddg_config:
+      delay_burst: 40.e-3
+      delta_width: 0
+      additional_triggers: 0
+      polarity:
+      - 1 # T0 -> DDG MCS
+      - 0 # eiger
+      - 1 # falcon
+      - 1 
+      - 1
+      amplitude: 4.5
+      offset: 0
+      thres_trig_level: 2.5
+      set_high_on_exposure: False
+      set_high_on_stage: False
+  deviceTags:
+  - cSAXS
+  - ddg_detectors
+  onFailure: buffer
+  enabled: true
+  readoutPriority: async
+  softwareTrigger: True
+bpm4i:
+  readoutPriority: monitored
+  deviceClass: ophyd_devices.SimMonitor
+  deviceConfig:
+  deviceTags:
+    - beamline
+  enabled: true
+  readOnly: false
+samx:
+  readoutPriority: baseline
+  deviceClass: ophyd_devices.SimPositioner
+  deviceConfig:
+    delay: 1
+    limits:
+      - -50
+      - 50
+    tolerance: 0.01
+    update_frequency: 400
+  deviceTags:
+    - user motors
+  enabled: true
+  readOnly: false
+  

csaxs_bec/device_configs/flomni_config.yaml

@@ -1,6 +1,10 @@
+############################################################
+#################### flOMNI Galil motors ###################
+############################################################
+
 feyex:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
+  description: Xray eye X
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
   deviceConfig:
     axis_Id: D
     host: mpc2844.psi.ch
@@ -17,8 +21,8 @@ feyex:
     in: -16.267
     out: -1
 feyey:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
+  description: Xray eye Y
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
   deviceConfig:
     axis_Id: E
     host: mpc2844.psi.ch
@@ -34,8 +38,8 @@ feyey:
   userParameter:
     in: -10.467
 fheater:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
+  description: Heater Y
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
   deviceConfig:
     axis_Id: C
     host: mpc2844.psi.ch
@@ -48,17 +52,9 @@ fheater:
   onFailure: buffer
   readOnly: false
   readoutPriority: baseline
-flomni_samples:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.epics.devices.flomni_sample_storage.FlomniSampleStorage
-  deviceConfig: {}
-  enabled: true
-  onFailure: buffer
-  readOnly: false
-  readoutPriority: baseline
 foptx:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
+  description: Optics X
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
   deviceConfig:
     axis_Id: B
     host: mpc2844.psi.ch
@@ -74,8 +70,8 @@ foptx:
   userParameter:
     in: -13.761
 fopty:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
+  description: Optics Y
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
   deviceConfig:
     axis_Id: F
     host: mpc2844.psi.ch
@@ -92,8 +88,8 @@ fopty:
     in: 0.552
     out: 0.752
 foptz:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
+  description: Optics Z
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
   deviceConfig:
     axis_Id: A
     host: mpc2844.psi.ch
@@ -108,8 +104,166 @@ foptz:
   readoutPriority: baseline
   userParameter:
     in: 23
+fsamroy:
+  description: Sample rotation
+  deviceClass: csaxs_bec.devices.omny.galil.fupr_ophyd.FuprGalilMotor
+  deviceConfig:
+    axis_Id: A
+    host: mpc2844.psi.ch
+    limits:
+    - -5
+    - 365
+    port: 8084
+    sign: -1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+fsamx:
+  description: Sample coarse X
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
+  deviceConfig:
+    axis_Id: E
+    host: mpc2844.psi.ch
+    limits:
+    - -162
+    - 0
+    port: 8081
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: true
+  readoutPriority: baseline
+  userParameter:
+    in: -1.1
+fsamy:
+  description: Sample coarse Y
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
+  deviceConfig:
+    axis_Id: F
+    host: mpc2844.psi.ch
+    limits:
+    - 2
+    - 3.1
+    port: 8081
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: true
+  readoutPriority: baseline
+  userParameter:
+    in: 2.75
+ftracky:
+  description: Laser Tracker coarse Y
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
+  deviceConfig:
+    axis_Id: H
+    host: mpc2844.psi.ch
+    limits:
+    - 2.2
+    - 2.8
+    port: 8082
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+ftrackz:
+  description: Laser Tracker coarse Z
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
+  deviceConfig:
+    axis_Id: G
+    host: mpc2844.psi.ch
+    limits:
+    - 4.5
+    - 5.5
+    port: 8082
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+ftransx:
+  description: Sample transer X
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
+  deviceConfig:
+    axis_Id: C
+    host: mpc2844.psi.ch
+    limits:
+    - 0
+    - 50
+    port: 8081
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+ftransy:
+  description: Sample transer Y
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
+  deviceConfig:
+    axis_Id: A
+    host: mpc2844.psi.ch
+    limits:
+    - -100
+    - 0
+    port: 8081
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+ftransz:
+  description: Sample transer Z
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
+  deviceConfig:
+    axis_Id: B
+    host: mpc2844.psi.ch
+    limits:
+    - 0
+    - 145
+    port: 8081
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+ftray:
+  description: Sample transfer tray
+  deviceClass: csaxs_bec.devices.omny.galil.fgalil_ophyd.FlomniGalilMotor
+  deviceConfig:
+    axis_Id: D
+    host: mpc2844.psi.ch
+    limits:
+    - -200
+    - 0
+    port: 8081
+    sign: -1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+
+
+############################################################
+#################### flOMNI Sample Names ###################
+############################################################
+
+flomni_samples:
+  description: Sample names and storage
+  deviceClass: csaxs_bec.devices.omny.flomni_sample_storage.FlomniSampleStorage
+  deviceConfig: {}
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+
+############################################################
+#################### flOMNI Smaract motors #################
+############################################################
+
 fosax:
-  description: phase plate angle
+  description: OSA X
   deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
   deviceConfig:
     axis_Id: A
@@ -127,7 +281,7 @@ fosax:
     in: 9.124
     out: 5.3
 fosay:
-  description: phase plate angle
+  description: OSA Y
   deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
   deviceConfig:
     axis_Id: B
@@ -144,7 +298,7 @@ fosay:
   userParameter:
     in: 0.367
 fosaz:
-  description: phase plate angle
+  description: OSA Z
   deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
   deviceConfig:
     axis_Id: C
@@ -161,148 +315,14 @@ fosaz:
   userParameter:
     in: 8.5
     out: 6
-fsamroy:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fupr_ophyd.FuprGalilMotor
-  deviceConfig:
-    axis_Id: A
-    host: mpc2844.psi.ch
-    limits:
-    - -5
-    - 365
-    port: 8084
-    sign: -1
-  enabled: true
-  onFailure: buffer
-  readOnly: false
-  readoutPriority: baseline
-fsamx:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: E
-    host: mpc2844.psi.ch
-    limits:
-    - -162
-    - 0
-    port: 8081
-    sign: 1
-  enabled: true
-  onFailure: buffer
-  readOnly: true
-  readoutPriority: baseline
-  userParameter:
-    in: -1.1
-fsamy:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: F
-    host: mpc2844.psi.ch
-    limits:
-    - 2
-    - 3.1
-    port: 8081
-    sign: 1
-  enabled: true
-  onFailure: buffer
-  readOnly: true
-  readoutPriority: baseline
-  userParameter:
-    in: 2.75
-ftracky:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: H
-    host: mpc2844.psi.ch
-    limits:
-    - 2.2
-    - 2.8
-    port: 8082
-    sign: 1
-  enabled: true
-  onFailure: buffer
-  readOnly: false
-  readoutPriority: baseline
-ftrackz:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: G
-    host: mpc2844.psi.ch
-    limits:
-    - 4.5
-    - 5.5
-    port: 8082
-    sign: 1
-  enabled: true
-  onFailure: buffer
-  readOnly: false
-  readoutPriority: baseline
-ftransx:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: C
-    host: mpc2844.psi.ch
-    limits:
-    - 0
-    - 50
-    port: 8081
-    sign: 1
-  enabled: true
-  onFailure: buffer
-  readOnly: false
-  readoutPriority: baseline
-ftransy:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: A
-    host: mpc2844.psi.ch
-    limits:
-    - -100
-    - 0
-    port: 8081
-    sign: 1
-  enabled: true
-  onFailure: buffer
-  readOnly: false
-  readoutPriority: baseline
-ftransz:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: B
-    host: mpc2844.psi.ch
-    limits:
-    - 0
-    - 145
-    port: 8081
-    sign: 1
-  enabled: true
-  onFailure: buffer
-  readOnly: false
-  readoutPriority: baseline
-ftray:
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: D
-    host: mpc2844.psi.ch
-    limits:
-    - -200
-    - 0
-    port: 8081
-    sign: -1
-  enabled: true
-  onFailure: buffer
-  readOnly: false
-  readoutPriority: baseline
+
+############################################################
+#################### flOMNI RT motors ######################
+############################################################
+  
 rtx:
   description: flomni rt
-  deviceClass: csaxs_bec.devices.rt_lamni.rt_flomni_ophyd.RtFlomniMotor
+  deviceClass: csaxs_bec.devices.omny.rt.rt_flomni_ophyd.RtFlomniMotor
   deviceConfig:
     axis_Id: A
     host: mpc2844.psi.ch
@@ -318,7 +338,7 @@ rtx:
     rt_pid_voltage: -0.06219
 rty:
   description: flomni rt
-  deviceClass: csaxs_bec.devices.rt_lamni.rt_flomni_ophyd.RtFlomniMotor
+  deviceClass: csaxs_bec.devices.omny.rt.rt_flomni_ophyd.RtFlomniMotor
   deviceConfig:
     axis_Id: B
     host: mpc2844.psi.ch
@@ -332,7 +352,7 @@ rty:
     tomo_additional_offsety: 0
 rtz:
   description: flomni rt
-  deviceClass: csaxs_bec.devices.rt_lamni.rt_flomni_ophyd.RtFlomniMotor
+  deviceClass: csaxs_bec.devices.omny.rt.rt_flomni_ophyd.RtFlomniMotor
   deviceConfig:
     axis_Id: C
     host: mpc2844.psi.ch

csaxs_bec/device_configs/flomni_test_config.yaml

@@ -1,340 +0,0 @@
-fheater:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: C
-    host: mpc2844.psi.ch
-    limits:
-    - -15
-    - 0
-    port: 8082
-    sign: -1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-feyex:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: D
-    host: mpc2844.psi.ch
-    limits:
-    - -30
-    - -1
-    port: 8082
-    sign: 1
-  onFailure: buffer
-  userParameter:
-    in: -16.267
-    out: -1
-  enabled: true
-  readOnly: false
-feyey:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: E
-    host: mpc2844.psi.ch
-    limits:
-    - -1
-    - -10
-    port: 8082
-    sign: 1
-  onFailure: buffer
-  userParameter:
-    in: -10.467
-  enabled: true
-  readOnly: false
-foptx:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: B
-    host: mpc2844.psi.ch
-    limits:
-    - -17
-    - -12
-    port: 8082
-    sign: 1
-  onFailure: buffer
-  userParameter:
-    in: -13.761
-  enabled: true
-  readOnly: false
-fopty:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: F
-    host: mpc2844.psi.ch
-    limits:
-    - 0
-    - 4
-    port: 8082
-    sign: 1
-  onFailure: buffer
-  userParameter:
-    in: 0.552
-    out: 0.752
-  enabled: true
-  readOnly: false
-foptz:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: A
-    host: mpc2844.psi.ch
-    limits:
-    - 0
-    - 27
-    port: 8082
-    sign: 1
-  onFailure: buffer
-  userParameter:
-    in: 23
-  enabled: true
-  readOnly: false
-fosax:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
-  deviceConfig:
-    axis_Id: A
-    host: mpc2844.psi.ch
-    limits:
-    - 10.2
-    - 10.6
-    port: 3334
-    sign: -1
-  onFailure: buffer
-  userParameter:
-    in: 9.124
-    out: 5.3
-  enabled: true
-  readOnly: false
-fosay:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
-  deviceConfig:
-    axis_Id: B
-    host: mpc2844.psi.ch
-    limits:
-    - -3.1
-    - -2.9
-    port: 3334
-    sign: -1
-  onFailure: buffer
-  userParameter:
-    in: 0.367
-  enabled: true
-  readOnly: false
-fosaz:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
-  deviceConfig:
-    axis_Id: C
-    host: mpc2844.psi.ch
-    limits:
-    - -6
-    - -4
-    port: 3334
-    sign: 1
-  onFailure: buffer
-  userParameter:
-    in: 8.5
-    out: 6
-  enabled: true
-  readOnly: false
-fsamroy:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fupr_ophyd.FuprGalilMotor
-  deviceConfig:
-    axis_Id: A
-    host: mpc2844.psi.ch
-    limits:
-    - -5
-    - 365
-    port: 8084
-    sign: -1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-fsamx:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: E
-    host: mpc2844.psi.ch
-    limits:
-    - -162
-    - 0
-    port: 8081
-    sign: 1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-  userParameter:
-    in: -1.1
-fsamy:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: F
-    host: mpc2844.psi.ch
-    limits:
-    - 2
-    - 3.1
-    port: 8081
-    sign: 1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-  userParameter:
-    in: 2.75
-ftracky:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: H
-    host: mpc2844.psi.ch
-    limits:
-    - 2.2
-    - 2.8
-    port: 8082
-    sign: 1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-ftrackz:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: G
-    host: mpc2844.psi.ch
-    limits:
-    - 4.5
-    - 5.5
-    port: 8082
-    sign: 1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-ftransx:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: C
-    host: mpc2844.psi.ch
-    limits:
-    - 0
-    - 50
-    port: 8081
-    sign: 1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-ftransy:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: A
-    host: mpc2844.psi.ch
-    limits:
-    - -100
-    - 0
-    port: 8081
-    sign: 1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-ftransz:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: B
-    host: mpc2844.psi.ch
-    limits:
-    - 0
-    - 145
-    port: 8081
-    sign: 1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-ftray:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.galil.fgalil_ophyd.FlomniGalilMotor
-  deviceConfig:
-    axis_Id: D
-    host: mpc2844.psi.ch
-    limits:
-    - -200
-    - 0
-    port: 8081
-    sign: -1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-
-flomni_samples:
-  readoutPriority: baseline
-  description: phase plate angle
-  deviceClass: csaxs_bec.devices.epics.devices.FlomniSampleStorage
-  deviceConfig:
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-
-rtx:
-  readoutPriority: on_request
-  description: flomni rt
-  deviceClass: csaxs_bec.devices.rt_lamni.rt_flomni_ophyd.RtFlomniMotor
-  deviceConfig:
-    axis_Id: A
-    host: mpc2844.psi.ch
-    port: 2222
-    sign: 1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-rty:
-  readoutPriority: on_request
-  description: flomni rt
-  deviceClass: csaxs_bec.devices.rt_lamni.rt_flomni_ophyd.RtFlomniMotor
-  deviceConfig:
-    axis_Id: B
-    host: mpc2844.psi.ch
-    port: 2222
-    sign: 1
-  onFailure: buffer
-  enabled: true
-  readOnly: false
-rtz:
-  readoutPriority: on_request
-  description: flomni rt
-  deviceClass: csaxs_bec.devices.rt_lamni.rt_flomni_ophyd.RtFlomniMotor
-  deviceConfig:
-    axis_Id: C
-    host: mpc2844.psi.ch
-    port: 2222
-    sign: 1
-  onFailure: buffer
-  enabled: true
-  readOnly: false

csaxs_bec/device_configs/lamni_config.yaml

@@ -0,0 +1,261 @@
+############################################################
+#################### LamNI Galil motors ####################
+############################################################
+
+leyex:
+  description: Xray eye X
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
+  deviceConfig:
+    axis_Id: G
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: -1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: 14.117
+leyey:
+  description: Xray eye Y
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
+  deviceConfig:
+    axis_Id: H
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: -1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: 48.069
+    out: 0.5
+loptx:
+  description: Optics X
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
+  deviceConfig:
+    axis_Id: E
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: 1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: -0.244
+    out: -0.699
+lopty:
+  description: Optics Y
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
+  deviceConfig:
+    axis_Id: F
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: 1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: 3.724
+    out: 3.53
+loptz:
+  description: Optics Z
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
+  deviceConfig:
+    axis_Id: D
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: -1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+lsamrot:
+  description: Sample rotation
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
+  deviceConfig:
+    axis_Id: C
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: 1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+lsamx:
+  description: Sample coarse X
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
+  deviceConfig:
+    axis_Id: A
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: -1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    center: 8.768
+lsamy:
+  description: Sample coarse Y
+  deviceClass: csaxs_bec.devices.omny.galil.lgalil_ophyd.LamniGalilMotor
+  deviceConfig:
+    axis_Id: B
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: 1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    center: 10.041
+
+
+############################################################
+################ LamNI Smaract motors ######################
+############################################################
+
+losax:
+  description: OSA X
+  deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
+  deviceConfig:
+    axis_Id: A
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8085
+    sign: -1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: -1.442
+losay:
+  description: OSA Y
+  deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
+  deviceConfig:
+    axis_Id: B
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8085
+    sign: -1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: -0.171
+    out: 3.8
+losaz:
+  description: OSA Z
+  deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
+  deviceConfig:
+    axis_Id: C
+    host: mpc2680.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8085
+    sign: 1
+  deviceTags:
+  - lamni
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: -1
+    out: -3
+
+############################################################
+#################### flOMNI RT motors ######################
+############################################################
+
+rtx:
+  deviceClass: csaxs_bec.devices.omny.rt.rt_lamni_ophyd.RtLamniMotor
+  deviceConfig:
+    axis_Id: A
+    device_access: true
+    host: mpc2680.psi.ch
+    labels: rtx
+    limits:
+    - 0
+    - 0
+    port: 3333
+    sign: 1
+  deviceTags:
+  - lamni
+  readoutPriority: baseline
+  enabled: true
+  readOnly: False
+rty:
+  deviceClass: csaxs_bec.devices.omny.rt.rt_lamni_ophyd.RtLamniMotor
+  deviceConfig:
+    axis_Id: B
+    device_access: true
+    host: mpc2680.psi.ch
+    labels: rty
+    limits:
+    - 0
+    - 0
+    port: 3333
+    sign: 1
+  deviceTags:
+  - lamni
+  readoutPriority: baseline
+  enabled: true
+  readOnly: False
+
+

csaxs_bec/device_configs/npoint_template.yaml

@@ -0,0 +1,38 @@
+############################################################
+#################### npoint motors #########################
+############################################################
+
+npx:
+  description: nPoint x axis on the big npoint controller
+  deviceClass: csaxs_bec.devices.npoint.npoint.NPointAxis
+  deviceConfig:
+    axis_Id: A
+    host: "nPoint000003.psi.ch"
+    limits:
+    - -50
+    - 50
+    port: 23
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  deviceTags:
+  - npoint
+npy:
+  description: nPoint y axis on the big npoint controller
+  deviceClass: csaxs_bec.devices.npoint.npoint.NPointAxis
+  deviceConfig:
+    axis_Id: B
+    host: "nPoint000003.psi.ch"
+    limits:
+    - -50
+    - 50
+    port: 23
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  deviceTags:
+  - npoint

csaxs_bec/device_configs/omny_config.yaml

@@ -0,0 +1,610 @@
+# ############################################################
+# #################### IDS Camera ######################
+# ############################################################
+cam200:
+  description: Camera200
+  deviceClass: csaxs_bec.devices.ids_cameras.ids_camera.IDSCamera
+  deviceConfig:
+    camera_ID: 200
+    bits_per_pixel: 24
+    channels: 3
+    m_n_colormode: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: async
+
+cam201:
+  description: Camera201
+  deviceClass: csaxs_bec.devices.ids_cameras.ids_camera.IDSCamera
+  deviceConfig:
+    camera_ID: 201
+    bits_per_pixel: 24
+    channels: 3
+    m_n_colormode: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: async
+
+cam202:
+  description: Camera202
+  deviceClass: csaxs_bec.devices.ids_cameras.ids_camera.IDSCamera
+  deviceConfig:
+    camera_ID: 202
+    bits_per_pixel: 24
+    channels: 3
+    m_n_colormode: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: async
+
+cam203:
+  description: Camera203
+  deviceClass: csaxs_bec.devices.ids_cameras.ids_camera.IDSCamera
+  deviceConfig:
+    camera_ID: 203
+    bits_per_pixel: 24
+    channels: 3
+    m_n_colormode: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: async
+
+############################################################
+#################### OMNY RT motors ########################
+############################################################
+  
+rtx:
+  description: OMNY rt
+  deviceClass: csaxs_bec.devices.omny.rt.rt_omny_ophyd.RtOMNYMotor
+  deviceConfig:
+    axis_Id: A
+    host: mpc3217.psi.ch
+    port: 3333
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: on_request
+  userParameter:
+    low_signal: 8500
+    min_signal: 8000
+rty:
+  description: OMNY rt
+  deviceClass: csaxs_bec.devices.omny.rt.rt_omny_ophyd.RtOMNYMotor
+  deviceConfig:
+    axis_Id: B
+    host: mpc3217.psi.ch
+    port: 3333
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: on_request
+  userParameter:
+    tomo_additional_offsety: 0
+rtz:
+  description: OMNY rt
+  deviceClass: csaxs_bec.devices.omny.rt.rt_omny_ophyd.RtOMNYMotor
+  deviceConfig:
+    axis_Id: C
+    host: mpc3217.psi.ch
+    port: 3333
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: on_request
+  
+# ############################################################
+# ##################### OMNY samples #########################
+# ############################################################
+omny_samples:
+  description: OMNYSampleStorage
+  deviceClass: csaxs_bec.devices.omny.omny_sample_storage.OMNYSampleStorage 
+  deviceConfig: {}
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+# ############################################################
+# ##################### OMNY vacuum ##########################
+# ############################################################
+# omny_vcs:
+#   description: OMNYVCS
+#   deviceClass: csaxs_bec.devices.omny.omny_vcs.OMNYVCS 
+#   deviceConfig: {}
+#   enabled: true
+#   onFailure: buffer
+#   readOnly: false
+#   readoutPriority: baseline
+# ############################################################
+# ##################### OMNY dewar ###########################
+# ############################################################
+omny_dewar:
+  description: OMNY Dewar Information
+  deviceClass: csaxs_bec.devices.omny.omny_dewar.OMNYDewar
+  deviceConfig: {}
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+
+# ############################################################
+# ##################### OMNY temperatures ####################
+# ############################################################
+omny_temperatures:
+  description: OMNY Temperatures and pressures
+  deviceClass: csaxs_bec.devices.omny.omny_temperatures.OMNYTemperatures
+  deviceConfig: {}
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+
+############################################################
+##################### OMNY Galil motors ####################
+############################################################
+ofzpx:
+  description: FZP X
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: A
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: -0.4317
+ofzpy:
+  description: FZP Y
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: B
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: 0.7944
+    out: 0.6377
+ofzpz:
+  description: FZP Z
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: C
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: -1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: 0
+otransx:
+  description: Transfer X
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: D
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: 0
+otransy:
+  description: Transfer Y
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: E
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    up_position: -1.2
+    gripper_sensorvoltagetarget: -2.30
+otransz:
+  description: Transfer Z
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: F
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8081
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: 0
+osamx:
+  description: Sample X
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: A
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8082
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: -0.1
+osamz:
+  description: Sample Z
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: B
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8082
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: false
+  onFailure: buffer
+  readOnly: true
+  readoutPriority: baseline
+  userParameter:
+    in: 0
+oosay:
+  description: OSA Y
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: C
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8082
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    near_field_in: 0.531
+    far_field_in: 0.4122
+oosax:
+  description: OSA X
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: D
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8082
+    sign: -1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    near_field_in: 3.2044
+    far_field_in: 3.022
+oosaz:
+  description: OSA Z
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: E
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8082
+    sign: -1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    near_field_in: -0.4452
+    far_field_in: 6.5
+oparkz:
+  description: OSA Y
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: F
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8082
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: 0
+oshuttleopen:
+  description: Shuttle opener
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: G
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8082
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: true
+  readoutPriority: baseline
+  userParameter:
+    in: 0
+oshuttlealign:
+  description: Shuttle aligner
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: H
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8082
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: true
+  readoutPriority: baseline
+  userParameter:
+    in: 0
+osamy:
+  description: Sample Y
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: A
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8083
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: 0
+otracky:
+  description: Laser Tracker Y
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: B
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8083
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    start_pos: -4.3431
+osamroy:
+  description: Sample rotation
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: C
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8083
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    in: 0
+otrackz:
+  description: Laser Tracker Z
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: E
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8083
+    sign: -1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    start_pos: -0.6948
+oeyex:
+  description: Xray eye X
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: F
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8083
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    xray_in: -45.7394
+oeyez:
+  description: Xray eye Z
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: G
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8083
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    xray_in: -2
+oeyey:
+  description: Xray eye Y
+  deviceClass: csaxs_bec.devices.omny.galil.ogalil_ophyd.OMNYGalilMotor
+  deviceConfig:
+    axis_Id: H
+    host: mpc3217.psi.ch
+    limits:
+      - 0
+      - 0
+    port: 8083
+    sign: 1
+  deviceTags:
+  - omny
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    xray_in: 0.0229
+
+############################################################
+#################### flOMNI Smaract motors #################
+############################################################
+
+ocsx:
+  description: Central Stop X
+  deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
+  deviceConfig:
+    axis_Id: B
+    host: mpc3217.psi.ch
+    limits:
+    - -2
+    - 2
+    port: 3334
+    sign: -1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    nothing: 0
+ocsy:
+  description: Central Stop Y
+  deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
+  deviceConfig:
+    axis_Id: A
+    host: mpc3217.psi.ch
+    limits:
+    - -2
+    - 2
+    port: 3334
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    nothing: 0
+oshield:
+  description: Thermal Shield Sample Stage
+  deviceClass: csaxs_bec.devices.smaract.smaract_ophyd.SmaractMotor
+  deviceConfig:
+    axis_Id: C
+    host: mpc3217.psi.ch
+    limits:
+    - -14.5
+    - 15.8
+    port: 3334
+    sign: 1
+  enabled: true
+  onFailure: buffer
+  readOnly: false
+  readoutPriority: baseline
+  userParameter:
+    nothing: 0

csaxs_bec/device_configs/x12sa_database.yml

@@ -220,7 +220,7 @@ bm5try:
   softwareTrigger: false
 bpm1:
   description: 'XBPM 1: Somewhere around mono (VME)'
-  deviceClass: csaxs_bec.devices.epics.devices.XbpmBase.XbpmCsaxsOp
+  deviceClass: csaxs_bec.devices.epics.XbpmBase.XbpmCsaxsOp
   deviceConfig:
     prefix: 'X12SA-OP-BPM2:'
   deviceTags:
@@ -242,7 +242,7 @@ bpm1i:
   softwareTrigger: false
 bpm2:
   description: 'XBPM 2: Somewhere around mono (VME)'
-  deviceClass: csaxs_bec.devices.epics.devices.XbpmBase.XbpmCsaxsOp
+  deviceClass: csaxs_bec.devices.epics.XbpmBase.XbpmCsaxsOp
   deviceConfig:
     prefix: 'X12SA-OP-BPM2:'
   deviceTags:
@@ -605,7 +605,7 @@ dtpush:
   softwareTrigger: false
 dtth:
   description: Detector tower tilt rotation
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.PmDetectorRotation
+  deviceClass: csaxs_bec.devices.epics.specMotors.PmDetectorRotation
   deviceConfig:
     prefix: X12SA-ES1-DETT:ROX1
   deviceTags:
@@ -880,7 +880,7 @@ fttrz:
   softwareTrigger: false
 idgap:
   description: Undulator gap size [mm]
-  deviceClass: csaxs_bec.devices.epics.devices.InsertionDevice.InsertionDevice
+  deviceClass: csaxs_bec.devices.epics.InsertionDevice.InsertionDevice
   deviceConfig:
     prefix: X12SA-ID
   deviceTags:
@@ -979,7 +979,7 @@ mitry3:
   softwareTrigger: false
 mobd:
   description: Monochromator bender virtual motor
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.PmMonoBender
+  deviceClass: csaxs_bec.devices.epics.specMotors.PmMonoBender
   deviceConfig:
     prefix: 'X12SA-OP-MO:'
   deviceTags:
@@ -1034,7 +1034,7 @@ mobddi:
   softwareTrigger: false
 mokev:
   description: Monochromator energy in keV
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.EnergyKev
+  deviceClass: csaxs_bec.devices.epics.specMotors.EnergyKev
   deviceConfig:
     read_pv: X12SA-OP-MO:ROX2
   deviceTags:
@@ -1089,7 +1089,7 @@ moroll2:
   softwareTrigger: false
 moth1:
   description: Monochromator Theta 1
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.MonoTheta1
+  deviceClass: csaxs_bec.devices.epics.specMotors.MonoTheta1
   deviceConfig:
     read_pv: X12SA-OP-MO:ROX1
   deviceTags:
@@ -1111,7 +1111,7 @@ moth1e:
   softwareTrigger: false
 moth2:
   description: Monochromator Theta 2
-  deviceClass: csaxs_bec.devices.epics.devices.specMotors.MonoTheta2
+  deviceClass: csaxs_bec.devices.epics.specMotors.MonoTheta2
   deviceConfig:
     read_pv: X12SA-OP-MO:ROX2
   deviceTags:
@@ -1230,17 +1230,17 @@ sec:
   onFailure: buffer
   readoutPriority: baseline
   softwareTrigger: false
-sl0h:
-  description: FrontEnd slit virtual movement
-  deviceClass: ophyd_devices.epics.devices.SlitH
-  deviceConfig:
-    prefix: 'X12SA-FE-SH1:'
-  deviceTags:
-  - epicsDevice
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
+# sl0h:
+#   description: FrontEnd slit virtual movement
+#   deviceClass: ophyd_devices.devices.SlitH
+#   deviceConfig:
+#     prefix: 'X12SA-FE-SH1:'
+#   deviceTags:
+#   - epicsDevice
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
 sl0trxi:
   description: FrontEnd slit inner blade movement
   deviceClass: ophyd.EpicsMotor
@@ -1263,17 +1263,17 @@ sl0trxo:
   onFailure: buffer
   readoutPriority: baseline
   softwareTrigger: false
-sl1h:
-  description: OpticsHutch slit virtual movement
-  deviceClass: ophyd_devices.epics.devices.SlitH
-  deviceConfig:
-    prefix: 'X12SA-OP-SH1:'
-  deviceTags:
-  - epicsDevice
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
+# sl1h:
+#   description: OpticsHutch slit virtual movement
+#   deviceClass: ophyd_devices.devices.SlitH
+#   deviceConfig:
+#     prefix: 'X12SA-OP-SH1:'
+#   deviceTags:
+#   - epicsDevice
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
 sl1trxi:
   description: OpticsHutch slit inner blade movement
   deviceClass: ophyd.EpicsMotor
@@ -1318,28 +1318,28 @@ sl1tryt:
   onFailure: buffer
   readoutPriority: baseline
   softwareTrigger: false
-sl1v:
-  description: OpticsHutch slit virtual movement
-  deviceClass: ophyd_devices.epics.devices.SlitV
-  deviceConfig:
-    prefix: 'X12SA-OP-SV1:'
-  deviceTags:
-  - epicsDevice
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-sl2h:
-  description: OpticsHutch slit 2 virtual movement
-  deviceClass: ophyd_devices.epics.devices.SlitH
-  deviceConfig:
-    prefix: 'X12SA-OP-SH2:'
-  deviceTags:
-  - epicsDevice
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
+# sl1v:
+#   description: OpticsHutch slit virtual movement
+#   deviceClass: ophyd_devices.devices.SlitV
+#   deviceConfig:
+#     prefix: 'X12SA-OP-SV1:'
+#   deviceTags:
+#   - epicsDevice
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# sl2h:
+#   description: OpticsHutch slit 2 virtual movement
+#   deviceClass: ophyd_devices.devices.SlitH
+#   deviceConfig:
+#     prefix: 'X12SA-OP-SH2:'
+#   deviceTags:
+#   - epicsDevice
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
 sl2trxi:
   description: OpticsHutch slit 2 inner blade movement
   deviceClass: ophyd.EpicsMotor
@@ -1384,72 +1384,72 @@ sl2tryt:
   onFailure: buffer
   readoutPriority: baseline
   softwareTrigger: false
-sl2v:
-  description: OpticsHutch slit 2 virtual movement
-  deviceClass: ophyd_devices.epics.devices.SlitV
-  deviceConfig:
-    prefix: 'X12SA-OP-SV2:'
-  deviceTags:
-  - epicsDevice
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-strox:
-  description: Girder virtual pitch
-  deviceClass: ophyd_devices.epics.devices.GirderMotorPITCH
-  deviceConfig:
-    prefix: X12SA-HG
-  deviceTags:
-  - beamlineMotor
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-stroy:
-  description: Girder virtual yaw
-  deviceClass: ophyd_devices.epics.devices.GirderMotorYAW
-  deviceConfig:
-    prefix: X12SA-HG
-  deviceTags:
-  - beamlineMotor
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-stroz:
-  description: Girder virtual roll
-  deviceClass: ophyd_devices.epics.devices.GirderMotorROLL
-  deviceConfig:
-    prefix: X12SA-HG
-  deviceTags:
-  - beamlineMotor
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-sttrx:
-  description: Girder X translation
-  deviceClass: ophyd_devices.epics.devices.GirderMotorX1
-  deviceConfig:
-    prefix: X12SA-HG
-  deviceTags:
-  - beamlineMotor
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
-sttry:
-  description: Girder Y translation
-  deviceClass: ophyd_devices.epics.devices.GirderMotorY1
-  deviceConfig:
-    prefix: X12SA-HG
-  deviceTags:
-  - beamlineMotor
-  enabled: true
-  onFailure: buffer
-  readoutPriority: baseline
-  softwareTrigger: false
+# sl2v:
+#   description: OpticsHutch slit 2 virtual movement
+#   deviceClass: ophyd_devices.devices.SlitV
+#   deviceConfig:
+#     prefix: 'X12SA-OP-SV2:'
+#   deviceTags:
+#   - epicsDevice
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# strox:
+#   description: Girder virtual pitch
+#   deviceClass: ophyd_devices.devices.GirderMotorPITCH
+#   deviceConfig:
+#     prefix: X12SA-HG
+#   deviceTags:
+#   - beamlineMotor
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# stroy:
+#   description: Girder virtual yaw
+#   deviceClass: ophyd_devices.devices.GirderMotorYAW
+#   deviceConfig:
+#     prefix: X12SA-HG
+#   deviceTags:
+#   - beamlineMotor
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# stroz:
+#   description: Girder virtual roll
+#   deviceClass: ophyd_devices.devices.GirderMotorROLL
+#   deviceConfig:
+#     prefix: X12SA-HG
+#   deviceTags:
+#   - beamlineMotor
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# sttrx:
+#   description: Girder X translation
+#   deviceClass: ophyd_devices.devices.GirderMotorX1
+#   deviceConfig:
+#     prefix: X12SA-HG
+#   deviceTags:
+#   - beamlineMotor
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
+# sttry:
+#   description: Girder Y translation
+#   deviceClass: ophyd_devices.devices.GirderMotorY1
+#   deviceConfig:
+#     prefix: X12SA-HG
+#   deviceTags:
+#   - beamlineMotor
+#   enabled: true
+#   onFailure: buffer
+#   readoutPriority: baseline
+#   softwareTrigger: false
 transd:
   description: Transmission diode
   deviceClass: ophyd.EpicsSignalRO

csaxs_bec/devices/device_list.md

@@ -0,0 +1,44 @@
+// This file was autogenerated. Do not edit it manually.
+## Device List
+### csaxs_bec 
+| Device | Documentation | Module |
+| :----- | :------------- | :------ |
+| Bpm4i |  | [csaxs_bec.devices.epics.specMotors](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/specMotors.py) |
+| DelayGeneratorcSAXS | <br>    DG645 delay generator at cSAXS (multiple can be in use depending on the setup)<br><br>    Default values for setting up DDG.<br>    Note: checks of set calues are not (only partially) included, check manual for details on possible settings.<br>    https://www.thinksrs.com/downloads/pdfs/manuals/DG645m.pdf<br><br>    - delay_burst               : (float >=0) Delay between trigger and first pulse in burst mode<br>    - delta_width               : (float >= 0) Add width to fast shutter signal to make sure its open during acquisition<br>    - additional_triggers       : (int) add additional triggers to burst mode (mcs card needs +1 triggers per line)<br>    - polarity                  : (list of 0/1) polarity for different channels<br>    - amplitude                 : (float) amplitude voltage of TTLs<br>    - offset                    : (float) offset for ampltitude<br>    - thres_trig_level          : (float) threshold of trigger amplitude<br><br>    Custom signals for logic in different DDGs during scans (for custom_prepare.prepare_ddg):<br><br>    - set_high_on_exposure      : (bool): if True, then TTL signal should go high during the full acquisition time of a scan.<br>    # TODO trigger_width and fixed_ttl could be combined into single list.<br>    - fixed_ttl_width           : (list of either 1 or 0), one for each channel.<br>    - trigger_width             : (float) if fixed_ttl_width is True, then the width of the TTL pulse is set to this value.<br>    - set_trigger_source        : (TriggerSource) specifies the default trigger source for the DDG.<br>    - premove_trigger           : (bool) if True, then a trigger should be executed before the scan starts (to be implemented in on_pre_scan).<br>    - set_high_on_stage         : (bool) if True, then TTL signal should go high already on stage.<br>     | [csaxs_bec.devices.epics.delay_generator_csaxs](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/delay_generator_csaxs.py) |
+| Eiger1p5MDetector |  | [csaxs_bec.devices.omny.eiger1p5m](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/eiger1p5m.py) |
+| Eiger9McSAXS | <br>    Eiger9M detector for CSAXS<br><br>    Parent class: PSIDetectorBase<br><br>    class attributes:<br>        custom_prepare_cls (FalconSetup)        : Custom detector setup class for cSAXS,<br>                                                  inherits from CustomDetectorMixin<br>        PSIDetectorBase.set_min_readout (float) : Minimum readout time for the detector<br>        Various EpicsPVs for controlling the detector<br>     | [csaxs_bec.devices.epics.eiger9m_csaxs](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/eiger9m_csaxs.py) |
+| EpicsDXPFalcon | <br>    DXP parameters for Falcon detector<br><br>    Base class to map EPICS PVs from DXP parameters to ophyd signals.<br>     | [csaxs_bec.devices.epics.falcon_csaxs](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/falcon_csaxs.py) |
+| FalconcSAXS | <br>    Falcon Sitoro detector for CSAXS<br><br>    Parent class: PSIDetectorBase<br><br>    class attributes:<br>        custom_prepare_cls (FalconSetup)        : Custom detector setup class for cSAXS,<br>                                                  inherits from CustomDetectorMixin<br>        PSIDetectorBase.set_min_readout (float) : Minimum readout time for the detector<br>        dxp (EpicsDXPFalcon)                    : DXP parameters for Falcon detector<br>        mca (EpicsMCARecord)                    : MCA parameters for Falcon detector<br>        hdf5 (FalconHDF5Plugins)                : HDF5 parameters for Falcon detector<br>        MIN_READOUT (float)                     : Minimum readout time for the detector<br>     | [csaxs_bec.devices.epics.falcon_csaxs](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/falcon_csaxs.py) |
+| FalconHDF5Plugins | <br>    HDF5 parameters for Falcon detector<br><br>    Base class to map EPICS PVs from HDF5 Plugin to ophyd signals.<br>     | [csaxs_bec.devices.epics.falcon_csaxs](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/falcon_csaxs.py) |
+| FlomniGalilMotor |  | [csaxs_bec.devices.omny.galil.fgalil_ophyd](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/galil/fgalil_ophyd.py) |
+| FlomniSampleStorage |  | [csaxs_bec.devices.omny.flomni_sample_storage](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/flomni_sample_storage.py) |
+| FuprGalilMotor |  | [csaxs_bec.devices.omny.galil.fupr_ophyd](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/galil/fupr_ophyd.py) |
+| GirderMotorPITCH | Girder YAW pseudo motor | [csaxs_bec.devices.epics.specMotors](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/specMotors.py) |
+| GirderMotorROLL | Girder ROLL pseudo motor | [csaxs_bec.devices.epics.specMotors](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/specMotors.py) |
+| GirderMotorX1 | Girder X translation pseudo motor | [csaxs_bec.devices.epics.specMotors](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/specMotors.py) |
+| GirderMotorY1 | Girder Y translation pseudo motor | [csaxs_bec.devices.epics.specMotors](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/specMotors.py) |
+| GirderMotorYAW | Girder YAW pseudo motor | [csaxs_bec.devices.epics.specMotors](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/specMotors.py) |
+| IDSCamera |  | [csaxs_bec.devices.ids_cameras.ids_camera](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/ids_cameras/ids_camera.py) |
+| InsertionDevice | Python wrapper for the CSAXS insertion device control<br><br>    This wrapper provides a positioner interface for the ID control.<br>    is completely custom XBPM with templates directly in the<br>    VME repo. Thus it needs a custom ophyd template as well...<br><br>    WARN: The x and y are not updated by the IOC<br>     | [csaxs_bec.devices.epics.InsertionDevice](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/InsertionDevice.py) |
+| LamniGalilMotor |  | [csaxs_bec.devices.omny.galil.lgalil_ophyd](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/galil/lgalil_ophyd.py) |
+| MCScSAXS | MCS card for cSAXS for implementation at cSAXS beamline | [csaxs_bec.devices.epics.mcs_csaxs](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/mcs_csaxs.py) |
+| NPointAxis | <br>    NPointAxis class, which inherits from Device and PositionerBase. This class<br>    represents an axis of an nPoint piezo stage and provides the necessary<br>    functionality to move the axis and read its current position.<br>     | [csaxs_bec.devices.npoint.npoint](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/npoint/npoint.py) |
+| OMNYDewar |  | [csaxs_bec.devices.omny.omny_dewar](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/omny_dewar.py) |
+| OMNYGalilMotor |  | [csaxs_bec.devices.omny.galil.ogalil_ophyd](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/galil/ogalil_ophyd.py) |
+| OMNYSampleStorage |  | [csaxs_bec.devices.omny.omny_sample_storage](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/omny_sample_storage.py) |
+| OMNYTemperatures |  | [csaxs_bec.devices.omny.omny_temperatures](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/omny_temperatures.py) |
+| OMNYVCS |  | [csaxs_bec.devices.omny.omny_vcs](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/omny_vcs.py) |
+| PilatuscSAXS | Pilatus_2 300k detector for CSAXS<br><br>    Parent class: PSIDetectorBase<br><br>    class attributes:<br>        custom_prepare_cls (Eiger9MSetup)   : Custom detector setup class for cSAXS,<br>                                              inherits from CustomDetectorMixin<br>        cam (SLSDetectorCam)                : Detector camera<br>        MIN_READOUT (float)                 : Minimum readout time for the detector<br><br>     | [csaxs_bec.devices.epics.pilatus_csaxs](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/pilatus_csaxs.py) |
+| PmDetectorRotation | Detector rotation pseudo motor<br><br>    Small wrapper to convert detector pusher position to rotation angle.<br>     | [csaxs_bec.devices.epics.specMotors](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/specMotors.py) |
+| PmMonoBender | Monochromator bender<br><br>    Small wrapper to combine the four monochromator bender motors.<br>     | [csaxs_bec.devices.epics.specMotors](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/specMotors.py) |
+| RtFlomniMotor |  | [csaxs_bec.devices.omny.rt.rt_flomni_ophyd](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/rt/rt_flomni_ophyd.py) |
+| RtLamniMotor |  | [csaxs_bec.devices.omny.rt.rt_lamni_ophyd](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/rt/rt_lamni_ophyd.py) |
+| RtOMNYMotor |  | [csaxs_bec.devices.omny.rt.rt_omny_ophyd](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/rt/rt_omny_ophyd.py) |
+| SGalilMotor |  "SGalil Motors at cSAXS have a<br>    DC motor (y axis - vertical) - implemented as C<br>    and a step motor (x-axis horizontal) - implemented as E<br>    that require different communication for control<br>     | [csaxs_bec.devices.omny.galil.sgalil_ophyd](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/omny/galil/sgalil_ophyd.py) |
+| SIS38XX | SIS38XX card for access to EPICs PVs at cSAXS beamline | [csaxs_bec.devices.epics.mcs_csaxs](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/mcs_csaxs.py) |
+| SLSDetectorCam | SLS Detector Camera - Pilatus<br><br>    Base class to map EPICS PVs to ophyd signals.<br>     | [csaxs_bec.devices.epics.pilatus_csaxs](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/pilatus_csaxs.py) |
+| SmaractMotor |  | [csaxs_bec.devices.smaract.smaract_ophyd](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/smaract/smaract_ophyd.py) |
+| XbpmBase | Python wrapper for X-ray Beam Position Monitors<br><br>    XBPM's consist of a metal-coated diamond window that ejects<br>    photoelectrons from the incoming X-ray beam. These electons<br>    are collected and their current is measured. Effectively<br>    they act as four quadrant photodiodes and are used as BPMs<br>    at the undulator beamlines of SLS.<br><br>    Note: EPICS provided signals are read only, but the user can<br>    change the beam position offset.<br>     | [csaxs_bec.devices.epics.XbpmBase](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/XbpmBase.py) |
+| XbpmCsaxsOp | Python wrapper for custom XBPMs in the cSAXS optics hutch<br><br>    This is  completely custom XBPM with templates directly in the<br>    VME repo. Thus it needs a custom ophyd template as well...<br><br>    WARN: The x and y are not updated by the IOC<br>     | [csaxs_bec.devices.epics.XbpmBase](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/XbpmBase.py) |
+| XbpmSim | Python wrapper for simulated X-ray Beam Position Monitors<br><br>    XBPM's consist of a metal-coated diamond window that ejects<br>    photoelectrons from the incoming X-ray beam. These electons<br>    are collected and their current is measured. Effectively<br>    they act as four quadrant photodiodes and are used as BPMs<br>    at the undulator beamlines of SLS.<br><br>    Note: EPICS provided signals are read only, but the user can<br>       change the beam position offset.<br><br>    This simulation device extends the basic proxy with a script that<br>    fills signals with quasi-randomized values.<br>     | [csaxs_bec.devices.epics.XbpmBase](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/epics/XbpmBase.py) |
+| Xeye |  | [csaxs_bec.devices.sls_devices.cSAXS.xeye](https://gitlab.psi.ch/bec/csaxs_bec/-/blob/main/csaxs_bec/devices/sls_devices/cSAXS/xeye.py) |

csaxs_bec/devices/epics/__init__.py

@@ -1,8 +1 @@
-# Standard ophyd classes
-from ophyd import EpicsMotor, EpicsSignal, EpicsSignalRO
-from ophyd.quadem import QuadEM
-from ophyd.sim import SynAxis, SynPeriodicSignal, SynSignal
 
-from .devices.delay_generator_csaxs import DelayGeneratorcSAXS
-from .devices.flomni_sample_storage import FlomniSampleStorage
-from .devices.InsertionDevice import InsertionDevice

csaxs_bec/devices/epics/cSaxsVirtualMotors.py

@@ -0,0 +1,32 @@
+""" TODO This class seems to be missing various imports and appears to have not been tested in motion yet."""
+
+# TABLES_DT_PUSH_DIST_MM = 890
+
+
+# class DetectorTableTheta(PseudoPositioner):
+#     """Detector table tilt motor
+
+#     Small wrapper to adjust the detector table tilt as angle.
+#     The table is pushed from one side by a single vertical motor.
+
+#     Note: Rarely used!
+#     """
+
+#     # Real axis (in degrees)
+#     pusher = Component(EpicsMotor, "", name="pusher")
+#     # Virtual axis
+#     theta = Component(PseudoSingle, name="theta")
+
+#     _real = ["pusher"]
+
+#     @pseudo_position_argument
+#     def forward(self, pseudo_pos):
+#         return self.RealPosition(
+#             pusher=tan(pseudo_pos.theta * 3.141592 / 180.0) * TABLES_DT_PUSH_DIST_MM
+#         )
+
+#     @real_position_argument
+#     def inverse(self, real_pos):
+#         return self.PseudoPosition(
+#             theta=-180 * atan(real_pos.pusher / TABLES_DT_PUSH_DIST_MM) / 3.141592
+#         )

csaxs_bec/devices/epics/delay_generator_csaxs.py

@@ -0,0 +1,274 @@
+from bec_lib import bec_logger
+from ophyd import Component, DeviceStatus, Kind
+from ophyd_devices.devices.delay_generator_645 import DelayGenerator, TriggerSource
+from ophyd_devices.interfaces.base_classes.bec_device_base import BECDeviceBase, CustomPrepare
+from ophyd_devices.sim.sim_signals import SetableSignal
+from ophyd_devices.utils import bec_utils
+
+logger = bec_logger.logger
+
+
+class DelayGeneratorcSAXSError(Exception):
+    """Exception raised for errors."""
+
+
+class DDGSetup(CustomPrepare["DelayGeneratorcSAXS"]):
+    """
+    Custom Prepare class with hooks for beamline specific logic for the DG645 at CSAXS
+    """
+
+    def on_wait_for_connection(self) -> None:
+        """Init default parameter after the all signals are connected"""
+        for ii, channel in enumerate(self.parent.all_channels):
+            self.parent.set_channels("polarity", self.parent.polarity.get()[ii], [channel])
+
+        self.parent.set_channels("amplitude", self.parent.amplitude.get())
+        self.parent.set_channels("offset", self.parent.offset.get())
+        # Setup reference
+        self.parent.set_channels(
+            "reference", 0, [f"channel{pair}.ch1" for pair in self.parent.all_delay_pairs]
+        )
+        self.parent.set_channels(
+            "reference", 0, [f"channel{pair}.ch2" for pair in self.parent.all_delay_pairs]
+        )
+        self.parent.set_trigger(getattr(TriggerSource, self.parent.set_trigger_source.get()))
+        # Set threshold level for ext. pulses
+        self.parent.level.put(self.parent.thres_trig_level.get())
+
+    def on_stage(self) -> None:
+        "Hook execute before the scan starts"
+        if self.parent.scaninfo.scan_type == "step":
+            exp_time = self.parent.scaninfo.exp_time
+            delay = 0
+            self.parent.burst_disable()
+            self.parent.set_trigger(TriggerSource.SINGLE_SHOT)
+            self.parent.set_channels(signal="width", value=exp_time)
+            self.parent.set_channels(signal="delay", value=delay)
+            return
+        scan_name = self.parent.scaninfo.scan_msg.content["info"].get("scan_name", "")
+        if scan_name == "jjf_test":
+            # TODO implement the logic for JJF triggering
+            exp_time = 480e-6  # self.parent.scaninfo.exp_time
+            readout = 20e-6  # self.parent.scaninfo.readout_time
+            total_exposure = exp_time + readout
+            num_burst_cycle = self.parent.scaninfo.scan_msg.content["info"]["kwargs"]["num_points"]
+            num_burst_cycle = int(num_burst_cycle * self.parent.scaninfo.exp_time / total_exposure)
+            delay = 0
+            delay_burst = self.parent.delay_burst.get()
+
+            self.parent.set_trigger(trigger_source=TriggerSource.SINGLE_SHOT)
+
+            self.parent.set_channels(signal="width", value=exp_time)
+            self.parent.set_channels(signal="delay", value=delay)
+            self.parent.burst_enable(
+                count=num_burst_cycle, delay=delay_burst, period=total_exposure, config="first"
+            )
+            logger.info(
+                f"{self.parent.name}: On stage with n_burst: {num_burst_cycle} and total_exp {total_exposure}"
+            )
+
+    def on_trigger(self) -> DeviceStatus:
+        """Method to be executed upon trigger"""
+        if self.parent.scaninfo.scan_type == "step":
+            self.parent.trigger_shot.put(1)
+            return
+        scan_name = self.parent.scaninfo.scan_msg.content["info"].get("scan_name", "")
+        if scan_name == "jjf_test":
+            exp_time = 480e-6  # self.parent.scaninfo.exp_time
+            readout = 20e-6  # self.parent.scaninfo.readout_time
+            total_exposure = exp_time + readout
+            num_burst_cycle = self.parent.scaninfo.scan_msg.content["info"]["kwargs"]["num_points"]
+            num_burst_cycle = int(num_burst_cycle * self.parent.scaninfo.exp_time / total_exposure)
+
+            # Start trigger cycle
+            self.parent.trigger_burst_readout.put(1)
+
+            # Create status object that will wait for the end of the burst cycle
+            status = self.wait_with_status(
+                signal_conditions=[(self.parent.burst_cycle_finished, 1)],
+                timeout=num_burst_cycle * total_exposure + 1,  # add 1s to be sure
+                check_stopped=True,
+                exception_on_timeout=DelayGeneratorcSAXSError(
+                    f"{self.parent.name} run into timeout in complete call."
+                ),
+            )
+            logger.info(f"Return status {self.parent.name}")
+            return status
+
+    def on_complete(self) -> DeviceStatus:
+        pass
+
+    def on_pre_scan(self) -> None:
+        """
+        Method called by pre_scan hook in parent class.
+
+        Executes trigger if premove_trigger is Trus.
+        """
+        if self.parent.premove_trigger.get() is True:
+            self.parent.trigger_shot.put(1)
+
+
+class DelayGeneratorcSAXS(BECDeviceBase, DelayGenerator):
+    """
+    DG645 delay generator at cSAXS (multiple can be in use depending on the setup)
+
+    Default values for setting up DDG.
+    Note: checks of set calues are not (only partially) included, check manual for details on possible settings.
+    https://www.thinksrs.com/downloads/pdfs/manuals/DG645m.pdf
+
+    - delay_burst               : (float >=0) Delay between trigger and first pulse in burst mode
+    - delta_width               : (float >= 0) Add width to fast shutter signal to make sure its open during acquisition
+    - additional_triggers       : (int) add additional triggers to burst mode (mcs card needs +1 triggers per line)
+    - polarity                  : (list of 0/1) polarity for different channels
+    - amplitude                 : (float) amplitude voltage of TTLs
+    - offset                    : (float) offset for ampltitude
+    - thres_trig_level          : (float) threshold of trigger amplitude
+
+    Custom signals for logic in different DDGs during scans (for custom_prepare.prepare_ddg):
+
+    - set_high_on_exposure      : (bool): if True, then TTL signal should go high during the full acquisition time of a scan.
+    # TODO trigger_width and fixed_ttl could be combined into single list.
+    - fixed_ttl_width           : (list of either 1 or 0), one for each channel.
+    - trigger_width             : (float) if fixed_ttl_width is True, then the width of the TTL pulse is set to this value.
+    - set_trigger_source        : (TriggerSource) specifies the default trigger source for the DDG.
+    - premove_trigger           : (bool) if True, then a trigger should be executed before the scan starts (to be implemented in on_pre_scan).
+    - set_high_on_stage         : (bool) if True, then TTL signal should go high already on stage.
+    """
+
+    custom_prepare_cls = DDGSetup
+
+    # Custom signals passed on during the init procedure via BEC
+    # TODO review whether those should remain here like that
+
+    delay_burst = Component(
+        bec_utils.ConfigSignal, name="delay_burst", kind="config", config_storage_name="ddg_config"
+    )
+
+    delta_width = Component(
+        bec_utils.ConfigSignal, name="delta_width", kind="config", config_storage_name="ddg_config"
+    )
+
+    additional_triggers = Component(
+        bec_utils.ConfigSignal,
+        name="additional_triggers",
+        kind="config",
+        config_storage_name="ddg_config",
+    )
+
+    polarity = Component(
+        bec_utils.ConfigSignal, name="polarity", kind="config", config_storage_name="ddg_config"
+    )
+
+    fixed_ttl_width = Component(
+        bec_utils.ConfigSignal,
+        name="fixed_ttl_width",
+        kind="config",
+        config_storage_name="ddg_config",
+    )
+
+    amplitude = Component(
+        bec_utils.ConfigSignal, name="amplitude", kind="config", config_storage_name="ddg_config"
+    )
+
+    offset = Component(
+        bec_utils.ConfigSignal, name="offset", kind="config", config_storage_name="ddg_config"
+    )
+
+    thres_trig_level = Component(
+        bec_utils.ConfigSignal,
+        name="thres_trig_level",
+        kind="config",
+        config_storage_name="ddg_config",
+    )
+
+    set_high_on_exposure = Component(
+        bec_utils.ConfigSignal,
+        name="set_high_on_exposure",
+        kind="config",
+        config_storage_name="ddg_config",
+    )
+
+    set_high_on_stage = Component(
+        bec_utils.ConfigSignal,
+        name="set_high_on_stage",
+        kind="config",
+        config_storage_name="ddg_config",
+    )
+
+    set_trigger_source = Component(
+        bec_utils.ConfigSignal,
+        name="set_trigger_source",
+        kind="config",
+        config_storage_name="ddg_config",
+    )
+
+    trigger_width = Component(
+        bec_utils.ConfigSignal,
+        name="trigger_width",
+        kind="config",
+        config_storage_name="ddg_config",
+    )
+    premove_trigger = Component(
+        bec_utils.ConfigSignal,
+        name="premove_trigger",
+        kind="config",
+        config_storage_name="ddg_config",
+    )
+
+    def __init__(
+        self,
+        name: str,
+        prefix: str = "",
+        kind: Kind = None,
+        ddg_config: dict = None,
+        parent=None,
+        device_manager=None,
+        **kwargs,
+    ):
+        """
+        Args:
+            prefix (str, optional): Prefix of the device. Defaults to "".
+            name (str): Name of the device.
+            kind (str, optional): Kind of the device. Defaults to None.
+            read_attrs (list, optional): List of attributes to read. Defaults to None.
+            configuration_attrs (list, optional): List of attributes to configure. Defaults to None.
+            parent (Device, optional): Parent device. Defaults to None.
+            device_manager (DeviceManagerBase, optional): DeviceManagerBase object. Defaults to None.
+            sim_mode (bool, optional): Simulation mode flag. Defaults to False.
+            ddg_config (dict, optional): Dictionary of ddg_config signals. Defaults to None.
+
+        """
+
+        # Default values for ddg_config signals
+        self.ddg_config = {
+            # Setup default values
+            f"{name}_delay_burst": 0,
+            f"{name}_delta_width": 0,
+            f"{name}_additional_triggers": 0,
+            f"{name}_polarity": [1, 1, 1, 1, 1],
+            f"{name}_amplitude": 4.5,
+            f"{name}_offset": 0,
+            f"{name}_thres_trig_level": 2.5,
+            # Values for different behaviour during scans
+            f"{name}_fixed_ttl_width": [0, 0, 0, 0, 0],
+            f"{name}_trigger_width": None,
+            f"{name}_set_high_on_exposure": False,
+            f"{name}_set_high_on_stage": False,
+            f"{name}_set_trigger_source": "SINGLE_SHOT",
+            f"{name}_premove_trigger": False,
+        }
+        if ddg_config is not None:
+            # pylint: disable=expression-not-assigned
+            [self.ddg_config.update({f"{name}_{key}": value}) for key, value in ddg_config.items()]
+        super().__init__(
+            prefix=prefix,
+            name=name,
+            kind=kind,
+            parent=parent,
+            device_manager=device_manager,
+            **kwargs,
+        )
+
+
+# if __name__ == "__main__":
+#     dgen = DelayGeneratorcSAXS("X12SA-CPCL-DDG3:", name="ddg3")

csaxs_bec/devices/epics/devices/__init__.py

@@ -1,14 +0,0 @@
-# Standard ophyd classes
-from ophyd import EpicsMotor, EpicsSignal, EpicsSignalRO
-from ophyd.quadem import QuadEM
-from ophyd.sim import SynAxis, SynPeriodicSignal, SynSignal
-
-from .delay_generator_csaxs import DelayGeneratorcSAXS
-from .eiger9m_csaxs import Eiger9McSAXS
-
-# cSAXS
-from .falcon_csaxs import FalconcSAXS
-from .flomni_sample_storage import FlomniSampleStorage
-from .InsertionDevice import InsertionDevice
-from .mcs_csaxs import MCScSAXS
-from .pilatus_csaxs import PilatuscSAXS

csaxs_bec/devices/epics/devices/cSaxsVirtualMotors.py

@@ -1,32 +0,0 @@
-""" TODO This class seems to be missing various imports and appears to have not been tested in motion yet."""
-
-TABLES_DT_PUSH_DIST_MM = 890
-
-
-class DetectorTableTheta(PseudoPositioner):
-    """Detector table tilt motor
-
-    Small wrapper to adjust the detector table tilt as angle.
-    The table is pushed from one side by a single vertical motor.
-
-    Note: Rarely used!
-    """
-
-    # Real axis (in degrees)
-    pusher = Component(EpicsMotor, "", name="pusher")
-    # Virtual axis
-    theta = Component(PseudoSingle, name="theta")
-
-    _real = ["pusher"]
-
-    @pseudo_position_argument
-    def forward(self, pseudo_pos):
-        return self.RealPosition(
-            pusher=tan(pseudo_pos.theta * 3.141592 / 180.0) * TABLES_DT_PUSH_DIST_MM
-        )
-
-    @real_position_argument
-    def inverse(self, real_pos):
-        return self.PseudoPosition(
-            theta=-180 * atan(real_pos.pusher / TABLES_DT_PUSH_DIST_MM) / 3.141592
-        )

csaxs_bec/devices/epics/devices/delay_generator_csaxs.py

@@ -1,345 +0,0 @@
-from bec_lib import bec_logger
-from ophyd import Component
-from ophyd_devices.epics.devices.psi_delay_generator_base import (
-    DDGCustomMixin,
-    PSIDelayGeneratorBase,
-    TriggerSource,
-)
-from ophyd_devices.utils import bec_utils
-
-logger = bec_logger.logger
-
-
-class DelayGeneratorError(Exception):
-    """Exception raised for errors."""
-
-
-class DDGSetup(DDGCustomMixin):
-    """
-    Mixin class for DelayGenerator logic at cSAXS.
-
-    At cSAXS, multiple DDGs were operated at the same time. There different behaviour is
-        implemented in the ddg_config signals that are passed via the device config.
-    """
-
-    def initialize_default_parameter(self) -> None:
-        """Method to initialize default parameters."""
-        for ii, channel in enumerate(self.parent.all_channels):
-            self.parent.set_channels("polarity", self.parent.polarity.get()[ii], [channel])
-
-        self.parent.set_channels("amplitude", self.parent.amplitude.get())
-        self.parent.set_channels("offset", self.parent.offset.get())
-        # Setup reference
-        self.parent.set_channels(
-            "reference", 0, [f"channel{pair}.ch1" for pair in self.parent.all_delay_pairs]
-        )
-        self.parent.set_channels(
-            "reference", 0, [f"channel{pair}.ch2" for pair in self.parent.all_delay_pairs]
-        )
-        self.parent.set_trigger(getattr(TriggerSource, self.parent.set_trigger_source.get()))
-        # Set threshold level for ext. pulses
-        self.parent.level.put(self.parent.thres_trig_level.get())
-
-    def prepare_ddg(self) -> None:
-        """
-        Method to prepare scan logic of cSAXS
-
-        Two scantypes are supported: "step" and "fly":
-        - step: Scan is performed by stepping the motor and acquiring data at each step
-        - fly: Scan is performed by moving the motor with a constant velocity and acquiring data
-
-        Custom logic for different DDG behaviour during scans.
-
-        - set_high_on_exposure      : If True, then TTL signal is high during
-                                    the full exposure time of the scan (all frames).
-                                    E.g. Keep shutter open for the full scan.
-        - fixed_ttl_width           : fixed_ttl_width is a list of 5 values, one for each channel.
-                                    If the value is 0, then the width of the TTL pulse is determined,
-                                    no matter which parameters are passed from the scaninfo for exposure time
-        - set_trigger_source        : Specifies the default trigger source for the DDG. For cSAXS, relevant ones
-                                    were: SINGLE_SHOT, EXT_RISING_EDGE
-        """
-        self.parent.set_trigger(getattr(TriggerSource, self.parent.set_trigger_source.get()))
-        # scantype "step"
-        if self.parent.scaninfo.scan_type == "step":
-            # High on exposure means that the signal
-            if self.parent.set_high_on_exposure.get():
-                # caluculate parameters
-                num_burst_cycle = 1 + self.parent.additional_triggers.get()
-
-                exp_time = (
-                    self.parent.delta_width.get()
-                    + self.parent.scaninfo.frames_per_trigger
-                    * (self.parent.scaninfo.exp_time + self.parent.scaninfo.readout_time)
-                )
-                total_exposure = exp_time
-                delay_burst = self.parent.delay_burst.get()
-
-                # Set individual channel widths, if fixed_ttl_width and trigger_width are combined, this can be a common call too
-                if not self.parent.trigger_width.get():
-                    self.parent.set_channels("width", exp_time)
-                else:
-                    self.parent.set_channels("width", self.parent.trigger_width.get())
-                for value, channel in zip(
-                    self.parent.fixed_ttl_width.get(), self.parent.all_channels
-                ):
-                    logger.debug(f"Trying to set DDG {channel} to {value}")
-                    if value != 0:
-                        self.parent.set_channels("width", value, channels=[channel])
-            else:
-                # caluculate parameters
-                exp_time = self.parent.delta_width.get() + self.parent.scaninfo.exp_time
-                total_exposure = exp_time + self.parent.scaninfo.readout_time
-                delay_burst = self.parent.delay_burst.get()
-                num_burst_cycle = (
-                    self.parent.scaninfo.frames_per_trigger + self.parent.additional_triggers.get()
-                )
-
-                # Set individual channel widths, if fixed_ttl_width and trigger_width are combined, this can be a common call too
-                if not self.parent.trigger_width.get():
-                    self.parent.set_channels("width", exp_time)
-                else:
-                    self.parent.set_channels("width", self.parent.trigger_width.get())
-        # scantype "fly"
-        elif self.parent.scaninfo.scan_type == "fly":
-            if self.parent.set_high_on_exposure.get():
-                # caluculate parameters
-                exp_time = (
-                    self.parent.delta_width.get()
-                    + self.parent.scaninfo.exp_time * self.parent.scaninfo.num_points
-                    + self.parent.scaninfo.readout_time * (self.parent.scaninfo.num_points - 1)
-                )
-                total_exposure = exp_time
-                delay_burst = self.parent.delay_burst.get()
-                num_burst_cycle = 1 + self.parent.additional_triggers.get()
-
-                # Set individual channel widths, if fixed_ttl_width and trigger_width are combined, this can be a common call too
-                if not self.parent.trigger_width.get():
-                    self.parent.set_channels("width", exp_time)
-                else:
-                    self.parent.set_channels("width", self.parent.trigger_width.get())
-                for value, channel in zip(
-                    self.parent.fixed_ttl_width.get(), self.parent.all_channels
-                ):
-                    logger.debug(f"Trying to set DDG {channel} to {value}")
-                    if value != 0:
-                        self.parent.set_channels("width", value, channels=[channel])
-            else:
-                # caluculate parameters
-                exp_time = self.parent.delta_width.get() + self.parent.scaninfo.exp_time
-                total_exposure = exp_time + self.parent.scaninfo.readout_time
-                delay_burst = self.parent.delay_burst.get()
-                num_burst_cycle = (
-                    self.parent.scaninfo.num_points + self.parent.additional_triggers.get()
-                )
-
-                # Set individual channel widths, if fixed_ttl_width and trigger_width are combined, this can be a common call too
-                if not self.parent.trigger_width.get():
-                    self.parent.set_channels("width", exp_time)
-                else:
-                    self.parent.set_channels("width", self.parent.trigger_width.get())
-
-        else:
-            raise Exception(f"Unknown scan type {self.parent.scaninfo.scan_type}")
-        # Set common DDG parameters
-        self.parent.burst_enable(num_burst_cycle, delay_burst, total_exposure, config="first")
-        self.parent.set_channels("delay", 0.0)
-
-    def on_trigger(self) -> None:
-        """Method to be executed upon trigger"""
-        if self.parent.source.read()[self.parent.source.name]["value"] == TriggerSource.SINGLE_SHOT:
-            self.parent.trigger_shot.put(1)
-
-    def check_scan_id(self) -> None:
-        """
-        Method to check if scan_id has changed.
-
-        If yes, then it changes parent.stopped to True, which will stop further actions.
-        """
-        old_scan_id = self.parent.scaninfo.scan_id
-        self.parent.scaninfo.load_scan_metadata()
-        if self.parent.scaninfo.scan_id != old_scan_id:
-            self.parent.stopped = True
-
-    def finished(self) -> None:
-        """Method checks if DDG finished acquisition"""
-
-    def on_pre_scan(self) -> None:
-        """
-        Method called by pre_scan hook in parent class.
-
-        Executes trigger if premove_trigger is Trus.
-        """
-        if self.parent.premove_trigger.get() is True:
-            self.parent.trigger_shot.put(1)
-
-
-class DelayGeneratorcSAXS(PSIDelayGeneratorBase):
-    """
-    DG645 delay generator at cSAXS (multiple can be in use depending on the setup)
-
-    Default values for setting up DDG.
-    Note: checks of set calues are not (only partially) included, check manual for details on possible settings.
-    https://www.thinksrs.com/downloads/pdfs/manuals/DG645m.pdf
-
-    - delay_burst               : (float >=0) Delay between trigger and first pulse in burst mode
-    - delta_width               : (float >= 0) Add width to fast shutter signal to make sure its open during acquisition
-    - additional_triggers       : (int) add additional triggers to burst mode (mcs card needs +1 triggers per line)
-    - polarity                  : (list of 0/1) polarity for different channels
-    - amplitude                 : (float) amplitude voltage of TTLs
-    - offset                    : (float) offset for ampltitude
-    - thres_trig_level          : (float) threshold of trigger amplitude
-
-    Custom signals for logic in different DDGs during scans (for custom_prepare.prepare_ddg):
-
-    - set_high_on_exposure      : (bool): if True, then TTL signal should go high during the full acquisition time of a scan.
-    # TODO trigger_width and fixed_ttl could be combined into single list.
-    - fixed_ttl_width           : (list of either 1 or 0), one for each channel.
-    - trigger_width             : (float) if fixed_ttl_width is True, then the width of the TTL pulse is set to this value.
-    - set_trigger_source        : (TriggerSource) specifies the default trigger source for the DDG.
-    - premove_trigger           : (bool) if True, then a trigger should be executed before the scan starts (to be implemented in on_pre_scan).
-    - set_high_on_stage         : (bool) if True, then TTL signal should go high already on stage.
-    """
-
-    custom_prepare_cls = DDGSetup
-
-    delay_burst = Component(
-        bec_utils.ConfigSignal, name="delay_burst", kind="config", config_storage_name="ddg_config"
-    )
-
-    delta_width = Component(
-        bec_utils.ConfigSignal, name="delta_width", kind="config", config_storage_name="ddg_config"
-    )
-
-    additional_triggers = Component(
-        bec_utils.ConfigSignal,
-        name="additional_triggers",
-        kind="config",
-        config_storage_name="ddg_config",
-    )
-
-    polarity = Component(
-        bec_utils.ConfigSignal, name="polarity", kind="config", config_storage_name="ddg_config"
-    )
-
-    fixed_ttl_width = Component(
-        bec_utils.ConfigSignal,
-        name="fixed_ttl_width",
-        kind="config",
-        config_storage_name="ddg_config",
-    )
-
-    amplitude = Component(
-        bec_utils.ConfigSignal, name="amplitude", kind="config", config_storage_name="ddg_config"
-    )
-
-    offset = Component(
-        bec_utils.ConfigSignal, name="offset", kind="config", config_storage_name="ddg_config"
-    )
-
-    thres_trig_level = Component(
-        bec_utils.ConfigSignal,
-        name="thres_trig_level",
-        kind="config",
-        config_storage_name="ddg_config",
-    )
-
-    set_high_on_exposure = Component(
-        bec_utils.ConfigSignal,
-        name="set_high_on_exposure",
-        kind="config",
-        config_storage_name="ddg_config",
-    )
-
-    set_high_on_stage = Component(
-        bec_utils.ConfigSignal,
-        name="set_high_on_stage",
-        kind="config",
-        config_storage_name="ddg_config",
-    )
-
-    set_trigger_source = Component(
-        bec_utils.ConfigSignal,
-        name="set_trigger_source",
-        kind="config",
-        config_storage_name="ddg_config",
-    )
-
-    trigger_width = Component(
-        bec_utils.ConfigSignal,
-        name="trigger_width",
-        kind="config",
-        config_storage_name="ddg_config",
-    )
-    premove_trigger = Component(
-        bec_utils.ConfigSignal,
-        name="premove_trigger",
-        kind="config",
-        config_storage_name="ddg_config",
-    )
-
-    def __init__(
-        self,
-        prefix="",
-        *,
-        name,
-        kind=None,
-        read_attrs=None,
-        configuration_attrs=None,
-        parent=None,
-        device_manager=None,
-        sim_mode=False,
-        ddg_config=None,
-        **kwargs,
-    ):
-        """
-        Args:
-            prefix (str, optional): Prefix of the device. Defaults to "".
-            name (str): Name of the device.
-            kind (str, optional): Kind of the device. Defaults to None.
-            read_attrs (list, optional): List of attributes to read. Defaults to None.
-            configuration_attrs (list, optional): List of attributes to configure. Defaults to None.
-            parent (Device, optional): Parent device. Defaults to None.
-            device_manager (DeviceManagerBase, optional): DeviceManagerBase object. Defaults to None.
-            sim_mode (bool, optional): Simulation mode flag. Defaults to False.
-            ddg_config (dict, optional): Dictionary of ddg_config signals. Defaults to None.
-
-        """
-        # Default values for ddg_config signals
-        self.ddg_config = {
-            # Setup default values
-            f"{name}_delay_burst": 0,
-            f"{name}_delta_width": 0,
-            f"{name}_additional_triggers": 0,
-            f"{name}_polarity": [1, 1, 1, 1, 1],
-            f"{name}_amplitude": 4.5,
-            f"{name}_offset": 0,
-            f"{name}_thres_trig_level": 2.5,
-            # Values for different behaviour during scans
-            f"{name}_fixed_ttl_width": [0, 0, 0, 0, 0],
-            f"{name}_trigger_width": None,
-            f"{name}_set_high_on_exposure": False,
-            f"{name}_set_high_on_stage": False,
-            f"{name}_set_trigger_source": "SINGLE_SHOT",
-            f"{name}_premove_trigger": False,
-        }
-        if ddg_config is not None:
-            # pylint: disable=expression-not-assigned
-            [self.ddg_config.update({f"{name}_{key}": value}) for key, value in ddg_config.items()]
-        super().__init__(
-            prefix=prefix,
-            name=name,
-            kind=kind,
-            read_attrs=read_attrs,
-            configuration_attrs=configuration_attrs,
-            parent=parent,
-            device_manager=device_manager,
-            sim_mode=sim_mode,
-            **kwargs,
-        )
-
-
-if __name__ == "__main__":
-    # Start delay generator in simulation mode.
-    # Note: To run, access to Epics must be available.
-    dgen = DelayGeneratorcSAXS("delaygen:DG1:", name="dgen", sim_mode=True)

csaxs_bec/devices/epics/eiger9m_csaxs.py

@@ -5,12 +5,13 @@ import time
 from typing import Any
 
 import numpy as np
-from bec_lib import messages, threadlocked
-from bec_lib.endpoints import MessageEndpoints
 from bec_lib.logger import bec_logger
 from ophyd import ADComponent as ADCpt
 from ophyd import Device, EpicsSignal, EpicsSignalRO, EpicsSignalWithRBV
-from ophyd_devices.epics.devices.psi_detector_base import CustomDetectorMixin, PSIDetectorBase
+from ophyd_devices.interfaces.base_classes.psi_detector_base import (
+    CustomDetectorMixin,
+    PSIDetectorBase,
+)
 from std_daq_client import StdDaqClient
 
 logger = bec_logger.logger
@@ -39,6 +40,17 @@ class Eiger9MSetup(CustomDetectorMixin):
         self.std_client = None
         self._lock = threading.RLock()
 
+    def on_init(self) -> None:
+        """Initialize the detector"""
+        self.initialize_default_parameter()
+        self.initialize_detector()
+        self.initialize_detector_backend()
+
+    def initialize_detector(self) -> None:
+        """Initialize detector"""
+        self.stop_detector()
+        self.parent.cam.trigger_mode.put(TriggerSource.GATING)
+
     def initialize_default_parameter(self) -> None:
         """Set default parameters for Eiger9M detector"""
         self.update_readout_time()
@@ -52,29 +64,19 @@ class Eiger9MSetup(CustomDetectorMixin):
         )
         self.parent.readout_time = max(readout_time, self.parent.MIN_READOUT)
 
-    def initialize_detector(self) -> None:
-        """Initialize detector"""
-        # Stops the detector
-        self.stop_detector()
-        # Sets the trigger source to GATING
-        self.parent.set_trigger(TriggerSource.GATING)
-
     def initialize_detector_backend(self) -> None:
         """Initialize detector backend"""
 
-        # Std client
         self.std_client = StdDaqClient(url_base=self.std_rest_server_url)
-
-        # Stop writer
         self.std_client.stop_writer()
-
-        # Change e-account
         eacc = self.parent.scaninfo.username
         self.update_std_cfg("writer_user_id", int(eacc.strip(" e")))
 
         signal_conditions = [(lambda: self.std_client.get_status()["state"], "READY")]
         if not self.wait_for_signals(
-            signal_conditions=signal_conditions, timeout=self.parent.timeout, all_signals=True
+            signal_conditions=signal_conditions,
+            timeout=self.parent.TIMEOUT_FOR_SIGNALS,
+            all_signals=True,
         ):
             raise EigerTimeoutError(
                 f"Std client not in READY state, returns: {self.std_client.get_status()}"
@@ -95,7 +97,6 @@ class Eiger9MSetup(CustomDetectorMixin):
 
         """
 
-        # Load config from client and check old value
         cfg = self.std_client.get_config()
         old_value = cfg.get(cfg_key)
         if old_value is None:
@@ -108,19 +109,112 @@ class Eiger9MSetup(CustomDetectorMixin):
                 f" {type(old_value)}:{old_value}"
             )
 
-        # Update config with new value and send back to client
         cfg.update({cfg_key: value})
         logger.debug(cfg)
         self.std_client.set_config(cfg)
         logger.debug(f"Updated std_daq config for key {cfg_key} from {old_value} to {value}")
 
+    def on_stage(self) -> None:
+        """Prepare the detector for scan"""
+        self.prepare_detector()
+        self.prepare_data_backend()
+        self.publish_file_location(done=False, successful=False)
+        self.arm_acquisition()
+
+    def prepare_detector(self) -> None:
+        """Prepare detector for scan"""
+        self.set_detector_threshold()
+        self.set_acquisition_params()
+        self.parent.cam.trigger_mode.put(TriggerSource.GATING)
+
+    def set_detector_threshold(self) -> None:
+        """
+        Set the detector threshold
+
+        The function sets the detector threshold automatically to 1/2 of the beam energy.
+        """
+        mokev = self.parent.device_manager.devices.mokev.obj.read()[
+            self.parent.device_manager.devices.mokev.name
+        ]["value"]
+        factor = 1
+        unit = getattr(self.parent.cam.threshold_energy, "units", None)
+
+        if unit is not None and unit == "eV":
+            factor = 1000
+        setpoint = int(mokev * factor)
+        energy = self.parent.cam.beam_energy.read()[self.parent.cam.beam_energy.name]["value"]
+
+        if setpoint != energy:
+            self.parent.cam.beam_energy.set(setpoint)
+
+        threshold = self.parent.cam.threshold_energy.read()[self.parent.cam.threshold_energy.name][
+            "value"
+        ]
+        if not np.isclose(setpoint / 2, threshold, rtol=0.05):
+            self.parent.cam.threshold_energy.set(setpoint / 2)
+
+    def set_acquisition_params(self) -> None:
+        """Set acquisition parameters for the detector"""
+        self.parent.cam.num_images.put(
+            int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger)
+        )
+        self.parent.cam.num_frames.put(1)
+        self.update_readout_time()
+
+    def prepare_data_backend(self) -> None:
+        """Prepare the data backend for the scan"""
+        self.parent.filepath.set(
+            self.parent.filewriter.compile_full_filename(f"{self.parent.name}.h5")
+        ).wait()
+        self.filepath_exists(self.parent.filepath.get())
+        self.stop_detector_backend()
+        try:
+            self.std_client.start_writer_async(
+                {
+                    "output_file": self.parent.filepath.get(),
+                    "n_images": int(
+                        self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger
+                    ),
+                }
+            )
+        except Exception as exc:
+            time.sleep(5)
+            if self.std_client.get_status()["state"] == "READY":
+                raise EigerTimeoutError(f"Timeout of start_writer_async with {exc}") from exc
+
+        signal_conditions = [
+            (lambda: self.std_client.get_status()["acquisition"]["state"], "WAITING_IMAGES")
+        ]
+        if not self.wait_for_signals(
+            signal_conditions=signal_conditions,
+            timeout=self.parent.TIMEOUT_FOR_SIGNALS,
+            check_stopped=False,
+            all_signals=True,
+        ):
+            raise EigerTimeoutError(
+                "Timeout of 5s reached for std_daq start_writer_async with std_daq client status"
+                f" {self.std_client.get_status()}"
+            )
+
+    def on_unstage(self) -> None:
+        """Unstage the detector"""
+        pass
+
+    def on_complete(self) -> None:
+        """Complete the detector"""
+        self.finished(timeout=self.parent.TIMEOUT_FOR_SIGNALS)
+        self.publish_file_location(done=True, successful=True)
+
+    def on_stop(self) -> None:
+        """Stop the detector"""
+        self.stop_detector()
+        self.stop_detector_backend()
+
     def stop_detector(self) -> None:
         """Stop the detector"""
 
         # Stop detector
         self.parent.cam.acquire.put(0)
-
-        # Check if detector returned in idle state
         signal_conditions = [
             (
                 lambda: self.parent.cam.detector_state.read()[self.parent.cam.detector_state.name][
@@ -132,7 +226,7 @@ class Eiger9MSetup(CustomDetectorMixin):
 
         if not self.wait_for_signals(
             signal_conditions=signal_conditions,
-            timeout=self.parent.timeout - self.parent.timeout // 2,
+            timeout=self.parent.TIMEOUT_FOR_SIGNALS - self.parent.TIMEOUT_FOR_SIGNALS // 2,
             check_stopped=True,
             all_signals=False,
         ):
@@ -140,7 +234,7 @@ class Eiger9MSetup(CustomDetectorMixin):
             self.parent.cam.acquire.put(0)
             if not self.wait_for_signals(
                 signal_conditions=signal_conditions,
-                timeout=self.parent.timeout - self.parent.timeout // 2,
+                timeout=self.parent.TIMEOUT_FOR_SIGNALS - self.parent.TIMEOUT_FOR_SIGNALS // 2,
                 check_stopped=True,
                 all_signals=False,
             ):
@@ -152,97 +246,12 @@ class Eiger9MSetup(CustomDetectorMixin):
         """Close file writer"""
         self.std_client.stop_writer()
 
-    def prepare_detector(self) -> None:
-        """Prepare detector for scan"""
-        self.set_detector_threshold()
-        self.set_acquisition_params()
-        self.parent.set_trigger(TriggerSource.GATING)
-
-    def set_detector_threshold(self) -> None:
-        """
-        Set the detector threshold
-
-        The function sets the detector threshold automatically to 1/2 of the beam energy.
-        """
-
-        # get current beam energy from device manageer
-        mokev = self.parent.device_manager.devices.mokev.obj.read()[
-            self.parent.device_manager.devices.mokev.name
-        ]["value"]
-        factor = 1
-
-        # Check if energies are eV or keV, assume keV as the default
-        unit = getattr(self.parent.cam.threshold_energy, "units", None)
-        if unit is not None and unit == "eV":
-            factor = 1000
-
-        # set energy on detector
-        setpoint = int(mokev * factor)
-        energy = self.parent.cam.beam_energy.read()[self.parent.cam.beam_energy.name]["value"]
-        if setpoint != energy:
-            self.parent.cam.beam_energy.set(setpoint)
-
-        # set threshold on detector
-        threshold = self.parent.cam.threshold_energy.read()[self.parent.cam.threshold_energy.name][
-            "value"
-        ]
-        if not np.isclose(setpoint / 2, threshold, rtol=0.05):
-            self.parent.cam.threshold_energy.set(setpoint / 2)
-
-    def set_acquisition_params(self) -> None:
-        """Set acquisition parameters for the detector"""
-
-        # Set number of images and frames (frames is for internal burst of detector)
-        self.parent.cam.num_images.put(
-            int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger)
-        )
-        self.parent.cam.num_frames.put(1)
-
-        # Update the readout time of the detector
-        self.update_readout_time()
-
-    def prepare_data_backend(self) -> None:
-        """Prepare the data backend for the scan"""
-        self.parent.filepath = self.parent.filewriter.compile_full_filename(
-            f"{self.parent.name}.h5"
-        )
-        self.filepath_exists(self.parent.filepath)
-        self.stop_detector_backend()
-        try:
-            self.std_client.start_writer_async(
-                {
-                    "output_file": self.parent.filepath,
-                    "n_images": int(
-                        self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger
-                    ),
-                }
-            )
-        except Exception as exc:
-            time.sleep(5)
-            if self.std_client.get_status()["state"] == "READY":
-                raise EigerTimeoutError(f"Timeout of start_writer_async with {exc}") from exc
-
-        # Check status of std_daq
-        signal_conditions = [
-            (lambda: self.std_client.get_status()["acquisition"]["state"], "WAITING_IMAGES")
-        ]
-        if not self.wait_for_signals(
-            signal_conditions=signal_conditions,
-            timeout=self.parent.timeout,
-            check_stopped=False,
-            all_signals=True,
-        ):
-            raise EigerTimeoutError(
-                "Timeout of 5s reached for std_daq start_writer_async with std_daq client status"
-                f" {self.std_client.get_status()}"
-            )
-
     def filepath_exists(self, filepath: str) -> None:
         """Check if filepath exists"""
         signal_conditions = [(lambda: os.path.exists(os.path.dirname(filepath)), True)]
         if not self.wait_for_signals(
             signal_conditions=signal_conditions,
-            timeout=self.parent.timeout,
+            timeout=self.parent.TIMEOUT_FOR_SIGNALS,
             check_stopped=False,
             all_signals=True,
         ):
@@ -261,7 +270,7 @@ class Eiger9MSetup(CustomDetectorMixin):
         ]
         if not self.wait_for_signals(
             signal_conditions=signal_conditions,
-            timeout=self.parent.timeout,
+            timeout=self.parent.TIMEOUT_FOR_SIGNALS,
             check_stopped=True,
             all_signals=False,
         ):
@@ -269,69 +278,35 @@ class Eiger9MSetup(CustomDetectorMixin):
                 f"Failed to arm the acquisition. Detector state {signal_conditions[0][0]}"
             )
 
-    def check_scan_id(self) -> None:
-        """Checks if scan_id has changed and stops the scan if it has"""
-        old_scan_id = self.parent.scaninfo.scan_id
-        self.parent.scaninfo.load_scan_metadata()
-        if self.parent.scaninfo.scan_id != old_scan_id:
-            self.parent.stopped = True
-
-    def publish_file_location(self, done: bool = False, successful: bool = None) -> None:
-        """
-        Publish the filepath to REDIS.
-
-        We publish two events here:
-        - file_event: event for the filewriter
-        - public_file: event for any secondary service (e.g. radial integ code)
-
-        Args:
-            done (bool): True if scan is finished
-            successful (bool): True if scan was successful
-        """
-        pipe = self.parent.connector.pipeline()
-        if successful is None:
-            msg = messages.FileMessage(file_path=self.parent.filepath, done=done)
-        else:
-            msg = messages.FileMessage(
-                file_path=self.parent.filepath, done=done, successful=successful
-            )
-        self.parent.connector.set_and_publish(
-            MessageEndpoints.public_file(self.parent.scaninfo.scan_id, self.parent.name),
-            msg,
-            pipe=pipe,
-        )
-        self.parent.connector.set_and_publish(
-            MessageEndpoints.file_event(self.parent.name), msg, pipe=pipe
-        )
-        pipe.execute()
-
-    @threadlocked
-    def finished(self):
+    def finished(self, timeout: int = 5) -> None:
         """Check if acquisition is finished."""
-        signal_conditions = [
-            (
-                lambda: self.parent.cam.acquire.read()[self.parent.cam.acquire.name]["value"],
-                DetectorState.IDLE,
-            ),
-            (lambda: self.std_client.get_status()["acquisition"]["state"], "FINISHED"),
-            (
-                lambda: self.std_client.get_status()["acquisition"]["stats"]["n_write_completed"],
-                int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger),
-            ),
-        ]
-        if not self.wait_for_signals(
-            signal_conditions=signal_conditions,
-            timeout=self.parent.timeout,
-            check_stopped=True,
-            all_signals=True,
-        ):
-            raise EigerTimeoutError(
-                f"Reached timeout with detector state {signal_conditions[0][0]}, std_daq state"
-                f" {signal_conditions[1][0]} and received frames of {signal_conditions[2][0]} for"
-                " the file writer"
-            )
-        self.stop_detector()
-        self.stop_detector_backend()
+        with self._lock:
+            signal_conditions = [
+                (
+                    lambda: self.parent.cam.acquire.read()[self.parent.cam.acquire.name]["value"],
+                    DetectorState.IDLE,
+                ),
+                (lambda: self.std_client.get_status()["acquisition"]["state"], "FINISHED"),
+                (
+                    lambda: self.std_client.get_status()["acquisition"]["stats"][
+                        "n_write_completed"
+                    ],
+                    int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger),
+                ),
+            ]
+            if not self.wait_for_signals(
+                signal_conditions=signal_conditions,
+                timeout=timeout,
+                check_stopped=True,
+                all_signals=True,
+            ):
+                raise EigerTimeoutError(
+                    f"Reached timeout with detector state {signal_conditions[0][0]}, std_daq state"
+                    f" {signal_conditions[1][0]} and received frames of {signal_conditions[2][0]} for"
+                    " the file writer"
+                )
+            self.stop_detector()
+            self.stop_detector_backend()
 
 
 class SLSDetectorCam(Device):
@@ -352,7 +327,7 @@ class SLSDetectorCam(Device):
     detector_state = ADCpt(EpicsSignalRO, "DetectorState_RBV")
 
 
-class TriggerSource(enum.IntEnum):
+class TriggerSource(int, enum.Enum):
     """Trigger signals for Eiger9M detector"""
 
     AUTO = 0
@@ -361,7 +336,7 @@ class TriggerSource(enum.IntEnum):
     BURST_TRIGGER = 3
 
 
-class DetectorState(enum.IntEnum):
+class DetectorState(int, enum.Enum):
     """Detector states for Eiger9M detector"""
 
     IDLE = 0
@@ -391,37 +366,16 @@ class Eiger9McSAXS(PSIDetectorBase):
     """
 
     # Specify which functions are revealed to the user in BEC client
-    USER_ACCESS = ["describe"]
+    USER_ACCESS = []
 
     # specify Setup class
     custom_prepare_cls = Eiger9MSetup
-    # specify minimum readout time for detector
+    # specify minimum readout time for detector and timeout for checks after unstage
     MIN_READOUT = 3e-3
+    TIMEOUT_FOR_SIGNALS = 5
     # specify class attributes
     cam = ADCpt(SLSDetectorCam, "cam1:")
 
-    def set_trigger(self, trigger_source: TriggerSource) -> None:
-        """Set trigger source for the detector.
-        Check the TriggerSource enum for possible values
-
-        Args:
-            trigger_source (TriggerSource): Trigger source for the detector
-
-        """
-        value = trigger_source
-        self.cam.trigger_mode.put(value)
-
-    def stage(self) -> list[object]:
-        """
-        Add functionality to stage, and arm the detector
-
-        Additional call to:
-        - custom_prepare.arm_acquisition()
-        """
-        rtr = super().stage()
-        self.custom_prepare.arm_acquisition()
-        return rtr
-
 
 if __name__ == "__main__":
     eiger = Eiger9McSAXS(name="eiger", prefix="X12SA-ES-EIGER9M:", sim_mode=True)

csaxs_bec/devices/epics/falcon_csaxs.py

@@ -1,13 +1,15 @@
 import enum
 import os
+import threading
 
-from bec_lib import messages
-from bec_lib.endpoints import MessageEndpoints
 from bec_lib.logger import bec_logger
 from ophyd import Component as Cpt
 from ophyd import Device, EpicsSignal, EpicsSignalRO, EpicsSignalWithRBV
 from ophyd.mca import EpicsMCARecord
-from ophyd_devices.epics.devices.psi_detector_base import CustomDetectorMixin, PSIDetectorBase
+from ophyd_devices.interfaces.base_classes.psi_detector_base import (
+    CustomDetectorMixin,
+    PSIDetectorBase,
+)
 
 logger = bec_logger.logger
 
@@ -96,6 +98,16 @@ class FalconSetup(CustomDetectorMixin):
 
     """
 
+    def __init__(self, *args, parent: Device = None, **kwargs) -> None:
+        super().__init__(*args, parent=parent, **kwargs)
+        self._lock = threading.RLock()
+
+    def on_init(self) -> None:
+        """Initialize Falcon detector"""
+        self.initialize_default_parameter()
+        self.initialize_detector()
+        self.initialize_detector_backend()
+
     def initialize_default_parameter(self) -> None:
         """
         Set default parameters for Falcon
@@ -121,7 +133,7 @@ class FalconSetup(CustomDetectorMixin):
         """Initialize Falcon detector"""
         self.stop_detector()
         self.stop_detector_backend()
-        self.parent.set_trigger(
+        self.set_trigger(
             mapping_mode=MappingSource.MAPPING, trigger_source=TriggerSource.GATE, ignore_gate=0
         )
         # 1 Realtime
@@ -133,30 +145,6 @@ class FalconSetup(CustomDetectorMixin):
         # Sets the number of pixels/spectra in the buffer
         self.parent.pixels_per_buffer.put(self.parent.value_pixel_per_buffer)
 
-    def stop_detector(self) -> None:
-        """Stops detector"""
-
-        self.parent.stop_all.put(1)
-        self.parent.erase_all.put(1)
-
-        signal_conditions = [
-            (lambda: self.parent.state.read()[self.parent.state.name]["value"], DetectorState.DONE)
-        ]
-
-        if not self.wait_for_signals(
-            signal_conditions=signal_conditions,
-            timeout=self.parent.timeout - self.parent.timeout // 2,
-            all_signals=False,
-        ):
-            # Retry stop detector and wait for remaining time
-            raise FalconTimeoutError(
-                f"Failed to stop detector, timeout with state {signal_conditions[0][0]}"
-            )
-
-    def stop_detector_backend(self) -> None:
-        """Stop the detector backend"""
-        self.parent.hdf5.capture.put(0)
-
     def initialize_detector_backend(self) -> None:
         """Initialize the detector backend for Falcon."""
         self.parent.hdf5.enable.put(1)
@@ -170,9 +158,16 @@ class FalconSetup(CustomDetectorMixin):
         # Segmentation into Spectra within EPICS, 1 is activate, 0 is deactivate
         self.parent.nd_array_mode.put(1)
 
+    def on_stage(self) -> None:
+        """Prepare detector and backend for acquisition"""
+        self.prepare_detector()
+        self.prepare_data_backend()
+        self.publish_file_location(done=False, successful=False)
+        self.arm_acquisition()
+
     def prepare_detector(self) -> None:
         """Prepare detector for acquisition"""
-        self.parent.set_trigger(
+        self.set_trigger(
             mapping_mode=MappingSource.MAPPING, trigger_source=TriggerSource.GATE, ignore_gate=0
         )
         self.parent.preset_real.put(self.parent.scaninfo.exp_time)
@@ -182,10 +177,10 @@ class FalconSetup(CustomDetectorMixin):
 
     def prepare_data_backend(self) -> None:
         """Prepare data backend for acquisition"""
-        self.parent.filepath = self.parent.filewriter.compile_full_filename(
-            f"{self.parent.name}.h5"
-        )
-        file_path, file_name = os.path.split(self.parent.filepath)
+        self.parent.filepath.set(
+            self.parent.filewriter.compile_full_filename(f"{self.parent.name}.h5")
+        ).wait()
+        file_path, file_name = os.path.split(self.parent.filepath.get())
         self.parent.hdf5.file_path.put(file_path)
         self.parent.hdf5.file_name.put(file_name)
         self.parent.hdf5.file_template.put("%s%s")
@@ -209,7 +204,7 @@ class FalconSetup(CustomDetectorMixin):
         ]
         if not self.wait_for_signals(
             signal_conditions=signal_conditions,
-            timeout=self.parent.timeout,
+            timeout=self.parent.TIMEOUT_FOR_SIGNALS,
             check_stopped=True,
             all_signals=False,
         ):
@@ -217,65 +212,86 @@ class FalconSetup(CustomDetectorMixin):
                 f"Failed to arm the acquisition. Detector state {signal_conditions[0][0]}"
             )
 
-    def check_scan_id(self) -> None:
-        """Checks if scan_id has changed and stops the scan if it has"""
-        old_scan_id = self.parent.scaninfo.scan_id
-        self.parent.scaninfo.load_scan_metadata()
-        if self.parent.scaninfo.scan_id != old_scan_id:
-            self.parent.stopped = True
+    def on_unstage(self) -> None:
+        """Unstage detector and backend"""
+        pass
 
-    def publish_file_location(self, done: bool = False, successful: bool = None) -> None:
-        """
-        Publish the filepath to REDIS.
+    def on_complete(self) -> None:
+        """Complete detector and backend"""
+        self.finished(timeout=self.parent.TIMEOUT_FOR_SIGNALS)
+        self.publish_file_location(done=True, successful=True)
 
-        We publish two events here:
-        - file_event: event for the filewriter
-        - public_file: event for any secondary service (e.g. radial integ code)
-
-        Args:
-            done (bool): True if scan is finished
-            successful (bool): True if scan was successful
-        """
-        pipe = self.parent.connector.pipeline()
-        if successful is None:
-            msg = messages.FileMessage(file_path=self.parent.filepath, done=done)
-        else:
-            msg = messages.FileMessage(
-                file_path=self.parent.filepath, done=done, successful=successful
-            )
-        self.parent.connector.set_and_publish(
-            MessageEndpoints.public_file(self.parent.scaninfo.scan_id, self.parent.name),
-            msg,
-            pipe=pipe,
-        )
-        self.parent.connector.set_and_publish(
-            MessageEndpoints.file_event(self.parent.name), msg, pipe=pipe
-        )
-        pipe.execute()
-
-    def finished(self) -> None:
-        """Check if scan finished succesfully"""
-        total_frames = int(
-            self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger
-        )
-        signal_conditions = [
-            (self.parent.dxp.current_pixel.get, total_frames),
-            (self.parent.hdf5.array_counter.get, total_frames),
-        ]
-        if not self.wait_for_signals(
-            signal_conditions=signal_conditions,
-            timeout=self.parent.timeout,
-            check_stopped=True,
-            all_signals=True,
-        ):
-            logger.debug(
-                f"Falcon missed a trigger: received trigger {self.parent.dxp.current_pixel.get()},"
-                f" send data {self.parent.hdf5.array_counter.get()} from total_frames"
-                f" {total_frames}"
-            )
+    def on_stop(self) -> None:
+        """Stop detector and backend"""
         self.stop_detector()
         self.stop_detector_backend()
 
+    def stop_detector(self) -> None:
+        """Stops detector"""
+
+        self.parent.stop_all.put(1)
+        self.parent.erase_all.put(1)
+
+        signal_conditions = [
+            (lambda: self.parent.state.read()[self.parent.state.name]["value"], DetectorState.DONE)
+        ]
+
+        if not self.wait_for_signals(
+            signal_conditions=signal_conditions,
+            timeout=self.parent.TIMEOUT_FOR_SIGNALS - self.parent.TIMEOUT_FOR_SIGNALS // 2,
+            all_signals=False,
+        ):
+            # Retry stop detector and wait for remaining time
+            raise FalconTimeoutError(
+                f"Failed to stop detector, timeout with state {signal_conditions[0][0]}"
+            )
+
+    def stop_detector_backend(self) -> None:
+        """Stop the detector backend"""
+        self.parent.hdf5.capture.put(0)
+
+    def finished(self, timeout: int = 5) -> None:
+        """Check if scan finished succesfully"""
+        with self._lock:
+            total_frames = int(
+                self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger
+            )
+            signal_conditions = [
+                (self.parent.dxp.current_pixel.get, total_frames),
+                (self.parent.hdf5.array_counter.get, total_frames),
+            ]
+            if not self.wait_for_signals(
+                signal_conditions=signal_conditions,
+                timeout=timeout,
+                check_stopped=True,
+                all_signals=True,
+            ):
+                logger.debug(
+                    f"Falcon missed a trigger: received trigger {self.parent.dxp.current_pixel.get()},"
+                    f" send data {self.parent.hdf5.array_counter.get()} from total_frames"
+                    f" {total_frames}"
+                )
+            self.stop_detector()
+            self.stop_detector_backend()
+
+    def set_trigger(
+        self, mapping_mode: MappingSource, trigger_source: TriggerSource, ignore_gate: int = 0
+    ) -> None:
+        """
+        Set triggering mode for detector
+
+        Args:
+            mapping_mode (MappingSource): Mapping mode for the detector
+            trigger_source (TriggerSource): Trigger source for the detector, pixel_advance_signal
+            ignore_gate (int): Ignore gate from TTL signal; defaults to 0
+
+        """
+        mapping = int(mapping_mode)
+        trigger = trigger_source
+        self.parent.collect_mode.put(mapping)
+        self.parent.pixel_advance_mode.put(trigger)
+        self.parent.ignore_gate.put(ignore_gate)
+
 
 class FalconcSAXS(PSIDetectorBase):
     """
@@ -300,6 +316,7 @@ class FalconcSAXS(PSIDetectorBase):
     custom_prepare_cls = FalconSetup
     # specify minimum readout time for detector
     MIN_READOUT = 3e-3
+    TIMEOUT_FOR_SIGNALS = 5
 
     # specify class attributes
     dxp = Cpt(EpicsDXPFalcon, "dxp1:")
@@ -327,30 +344,6 @@ class FalconcSAXS(PSIDetectorBase):
     pixels_per_run = Cpt(EpicsSignal, "PixelsPerRun")
     nd_array_mode = Cpt(EpicsSignal, "NDArrayMode")
 
-    def set_trigger(
-        self, mapping_mode: MappingSource, trigger_source: TriggerSource, ignore_gate: int = 0
-    ) -> None:
-        """
-        Set triggering mode for detector
-
-        Args:
-            mapping_mode (MappingSource): Mapping mode for the detector
-            trigger_source (TriggerSource): Trigger source for the detector, pixel_advance_signal
-            ignore_gate (int): Ignore gate from TTL signal; defaults to 0
-
-        """
-        mapping = int(mapping_mode)
-        trigger = trigger_source
-        self.collect_mode.put(mapping)
-        self.pixel_advance_mode.put(trigger)
-        self.ignore_gate.put(ignore_gate)
-
-    def stage(self) -> list[object]:
-        """Stage"""
-        rtr = super().stage()
-        self.custom_prepare.arm_acquisition()
-        return rtr
-
 
 if __name__ == "__main__":
     falcon = FalconcSAXS(name="falcon", prefix="X12SA-SITORO:", sim_mode=True)

csaxs_bec/devices/epics/mcs_csaxs.py

@@ -3,10 +3,14 @@ import threading
 from collections import defaultdict
 
 import numpy as np
-from bec_lib import MessageEndpoints, bec_logger, messages, threadlocked
+from bec_lib import bec_logger, messages
+from bec_lib.endpoints import MessageEndpoints
 from ophyd import Component as Cpt
 from ophyd import Device, EpicsSignal, EpicsSignalRO
-from ophyd_devices.epics.devices.psi_detector_base import CustomDetectorMixin, PSIDetectorBase
+from ophyd_devices.interfaces.base_classes.psi_detector_base import (
+    CustomDetectorMixin,
+    PSIDetectorBase,
+)
 from ophyd_devices.utils import bec_utils
 
 logger = bec_logger.logger
@@ -70,6 +74,11 @@ class MCSSetup(CustomDetectorMixin):
         ]
         self.mca_data = defaultdict(lambda: [])
 
+    def on_init(self) -> None:
+        """Init sequence for the detector"""
+        self.initialize_detector()
+        self.initialize_detector_backend()
+
     def initialize_detector(self) -> None:
         """Initialize detector"""
         # External trigger for pixel advance
@@ -80,7 +89,7 @@ class MCSSetup(CustomDetectorMixin):
         # Set number of channels to 5
         self.parent.mux_output.set(5)
         # Trigger Mode used for cSAXS
-        self.parent.set_trigger(TriggerSource.MODE3)
+        self.parent.input_mode.set(TriggerSource.MODE3)
         # specify polarity of trigger signals
         self.parent.input_polarity.set(0)
         self.parent.output_polarity.set(1)
@@ -109,17 +118,17 @@ class MCSSetup(CustomDetectorMixin):
             done=bool(max_value == value),  # == self.counter),
         )
 
-    @threadlocked
     def _on_mca_data(self, *args, obj=None, value=None, **kwargs) -> None:
         """Callback function for scan progress"""
-        if not isinstance(value, (list, np.ndarray)):
-            return
-        self.mca_data[obj.attr_name] = value
-        if len(self.mca_names) != len(self.mca_data):
-            return
-        self.acquisition_done = True
-        self._send_data_to_bec()
-        self.mca_data = defaultdict(lambda: [])
+        with self._lock:
+            if not isinstance(value, (list, np.ndarray)):
+                return
+            self.mca_data[obj.attr_name] = value
+            if len(self.mca_names) != len(self.mca_data):
+                return
+            self.acquisition_done = True
+            self._send_data_to_bec()
+            self.mca_data = defaultdict(lambda: [])
 
     def _send_data_to_bec(self) -> None:
         """Sends bundled data to BEC"""
@@ -138,10 +147,15 @@ class MCSSetup(CustomDetectorMixin):
             expire=self._stream_ttl,
         )
 
+    def on_stage(self) -> None:
+        """Stage detector"""
+        self.prepare_detector()
+        self.prepare_detector_backend()
+
     def prepare_detector(self) -> None:
         """Prepare detector for scan"""
         self.set_acquisition_params()
-        self.parent.set_trigger(TriggerSource.MODE3)
+        self.parent.input_mode.set(TriggerSource.MODE3)
 
     def set_acquisition_params(self) -> None:
         """Set acquisition parameters for scan"""
@@ -171,7 +185,15 @@ class MCSSetup(CustomDetectorMixin):
         self.counter = 0
         self.parent.erase_start.set(1)
 
-    def finished(self) -> None:
+    def on_unstage(self) -> None:
+        """Unstage detector"""
+        pass
+
+    def on_complete(self) -> None:
+        """Complete detector"""
+        self.finished(timeout=self.parent.TIMEOUT_FOR_SIGNALS)
+
+    def finished(self, timeout: int = 5) -> None:
         """Check if acquisition is finished, if not successful, rais MCSTimeoutError"""
         signal_conditions = [
             (lambda: self.acquisition_done, True),
@@ -179,7 +201,7 @@ class MCSSetup(CustomDetectorMixin):
         ]
         if not self.wait_for_signals(
             signal_conditions=signal_conditions,
-            timeout=self.parent.timeout,
+            timeout=timeout,
             check_stopped=True,
             all_signals=True,
         ):
@@ -191,12 +213,15 @@ class MCSSetup(CustomDetectorMixin):
                 f" {total_frames} frames arriving at the mcs card"
             )
 
+    def on_stop(self) -> None:
+        """Stop detector"""
+        self.stop_detector()
+        self.stop_detector_backend()
+
     def stop_detector(self) -> None:
         """Stop detector"""
         self.parent.stop_all.set(1)
 
-        return super().stop_detector()
-
     def stop_detector_backend(self) -> None:
         """Stop acquisition of data"""
         self.acquisition_done = True
@@ -209,7 +234,7 @@ class SIS38XX(Device):
 class MCScSAXS(PSIDetectorBase):
     """MCS card for cSAXS for implementation at cSAXS beamline"""
 
-    USER_ACCESS = ["describe", "_init_mcs"]
+    USER_ACCESS = []
     SUB_PROGRESS = "progress"
     SUB_VALUE = "value"
     _default_sub = SUB_VALUE
@@ -218,6 +243,7 @@ class MCScSAXS(PSIDetectorBase):
     custom_prepare_cls = MCSSetup
     # specify minimum readout time for detector
     MIN_READOUT = 0
+    TIMEOUT_FOR_SIGNALS = 5
 
     # PV access to SISS38XX card
     # Acquisition
@@ -268,11 +294,8 @@ class MCScSAXS(PSIDetectorBase):
         *,
         name,
         kind=None,
-        read_attrs=None,
-        configuration_attrs=None,
         parent=None,
         device_manager=None,
-        sim_mode=False,
         mcs_config=None,
         **kwargs,
     ):
@@ -285,25 +308,11 @@ class MCScSAXS(PSIDetectorBase):
             prefix=prefix,
             name=name,
             kind=kind,
-            read_attrs=read_attrs,
-            configuration_attrs=configuration_attrs,
             parent=parent,
             device_manager=device_manager,
-            sim_mode=sim_mode,
             **kwargs,
         )
 
-    def set_trigger(self, trigger_source: TriggerSource) -> None:
-        """Set trigger mode from TriggerSource"""
-        value = int(trigger_source)
-        self.input_mode.set(value)
-
-    def stage(self) -> list[object]:
-        """stage the detector for upcoming acquisition"""
-        rtr = super().stage()
-        self.custom_prepare.arm_acquisition()
-        return rtr
-
 
 # Automatically connect to test environmenr if directly invoked
 if __name__ == "__main__":

csaxs_bec/devices/epics/pilatus_csaxs.py

@@ -1,19 +1,21 @@
 import enum
 import json
 import os
+import threading
 import time
 
 import numpy as np
 import requests
-from bec_lib import MessageEndpoints, bec_logger, messages
+from bec_lib import bec_logger
 from ophyd import ADComponent as ADCpt
 from ophyd import Device, EpicsSignal, EpicsSignalRO, EpicsSignalWithRBV, Staged
-from ophyd_devices.epics.devices.psi_detector_base import CustomDetectorMixin, PSIDetectorBase
+from ophyd_devices.interfaces.base_classes.psi_detector_base import (
+    CustomDetectorMixin,
+    PSIDetectorBase,
+)
 
 logger = bec_logger.logger
 
-MIN_READOUT = 3e-3
-
 
 class PilatusError(Exception):
     """Base class for exceptions in this module."""
@@ -68,6 +70,15 @@ class PilatusSetup(CustomDetectorMixin):
 
     """
 
+    def __init__(self, *args, parent: Device = None, **kwargs) -> None:
+        super().__init__(*args, parent=parent, **kwargs)
+        self._lock = threading.RLock()
+
+    def on_init(self) -> None:
+        """Initialize the detector"""
+        self.initialize_default_parameter()
+        self.initialize_detector()
+
     def initialize_default_parameter(self) -> None:
         """Set default parameters for Eiger9M detector"""
         self.update_readout_time()
@@ -86,7 +97,15 @@ class PilatusSetup(CustomDetectorMixin):
         # Stops the detector
         self.stop_detector()
         # Sets the trigger source to GATING
-        self.parent.set_trigger(TriggerSource.EXT_ENABLE)
+        self.parent.cam.trigger_mode.put(TriggerSource.EXT_ENABLE)
+
+    def on_stage(self) -> None:
+        """Stage the detector for scan"""
+        self.prepare_detector()
+        self.prepare_data_backend()
+        self.publish_file_location(
+            done=False, successful=False, metadata={"input_path": self.parent.filepath_raw}
+        )
 
     def prepare_detector(self) -> None:
         """
@@ -97,84 +116,7 @@ class PilatusSetup(CustomDetectorMixin):
         """
         self.set_detector_threshold()
         self.set_acquisition_params()
-        self.parent.set_trigger(TriggerSource.EXT_ENABLE)
-
-    def set_detector_threshold(self) -> None:
-        """
-        Set correct detector threshold to 1/2 of current X-ray energy, allow 5% tolerance
-
-        Threshold might be in ev or keV
-        """
-
-        # get current beam energy from device manageer
-        mokev = self.parent.device_manager.devices.mokev.obj.read()[
-            self.parent.device_manager.devices.mokev.name
-        ]["value"]
-        factor = 1
-
-        # Check if energies are eV or keV, assume keV as the default
-        unit = getattr(self.parent.cam.threshold_energy, "units", None)
-        if unit is not None and unit == "eV":
-            factor = 1000
-
-        # set energy on detector
-        setpoint = int(mokev * factor)
-
-        # set threshold on detector
-        threshold = self.parent.cam.threshold_energy.read()[self.parent.cam.threshold_energy.name][
-            "value"
-        ]
-        if not np.isclose(setpoint / 2, threshold, rtol=0.05):
-            self.parent.cam.threshold_energy.set(setpoint / 2)
-
-    def set_acquisition_params(self) -> None:
-        """Set acquisition parameters for the detector"""
-
-        # Set number of images and frames (frames is for internal burst of detector)
-        self.parent.cam.num_images.put(
-            int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger)
-        )
-        self.parent.cam.num_frames.put(1)
-
-        # Update the readout time of the detector
-        self.update_readout_time()
-
-    def create_directory(self, filepath: str) -> None:
-        """Create directory if it does not exist"""
-        os.makedirs(filepath, exist_ok=True)
-
-    def stop_detector_backend(self) -> None:
-        """Stop the file writer zmq service for pilatus_2"""
-        self.close_file_writer()
-        time.sleep(0.1)
-        self.stop_file_writer()
-        time.sleep(0.1)
-
-    def close_file_writer(self) -> None:
-        """
-        Close the file writer for pilatus_2
-
-        Delete the data from x12sa-pd-2
-
-        """
-        url = "http://x12sa-pd-2:8080/stream/pilatus_2"
-        try:
-            res = self.send_requests_delete(url=url)
-            if not res.ok:
-                res.raise_for_status()
-        except Exception as exc:
-            logger.info(f"Pilatus2 close threw Exception: {exc}")
-
-    def stop_file_writer(self) -> None:
-        """
-        Stop the file writer for pilatus_2
-
-        Runs on xbl-daq-34
-        """
-        url = "http://xbl-daq-34:8091/pilatus_2/stop"
-        res = self.send_requests_put(url=url)
-        if not res.ok:
-            res.raise_for_status()
+        self.parent.cam.trigger_mode.put(TriggerSource.EXT_ENABLE)
 
     def prepare_data_backend(self) -> None:
         """
@@ -187,7 +129,9 @@ class PilatusSetup(CustomDetectorMixin):
 
         self.stop_detector_backend()
 
-        self.parent.filepath = self.parent.filewriter.compile_full_filename("pilatus_2.h5")
+        self.parent.filepath.set(
+            self.parent.filewriter.compile_full_filename("pilatus_2.h5")
+        ).wait()
         self.parent.cam.file_path.put("/dev/shm/zmq/")
         self.parent.cam.file_name.put(
             f"{self.parent.scaninfo.username}_2_{self.parent.scaninfo.scan_number:05d}"
@@ -271,6 +215,76 @@ class PilatusSetup(CustomDetectorMixin):
         except Exception as exc:
             logger.info(f"Pilatus2 wait threw Exception: {exc}")
 
+    def set_detector_threshold(self) -> None:
+        """
+        Set correct detector threshold to 1/2 of current X-ray energy, allow 5% tolerance
+
+        Threshold might be in ev or keV
+        """
+
+        # get current beam energy from device manageer
+        mokev = self.parent.device_manager.devices.mokev.obj.read()[
+            self.parent.device_manager.devices.mokev.name
+        ]["value"]
+        factor = 1
+
+        # Check if energies are eV or keV, assume keV as the default
+        unit = getattr(self.parent.cam.threshold_energy, "units", None)
+        if unit is not None and unit == "eV":
+            factor = 1000
+
+        # set energy on detector
+        setpoint = int(mokev * factor)
+
+        # set threshold on detector
+        threshold = self.parent.cam.threshold_energy.read()[self.parent.cam.threshold_energy.name][
+            "value"
+        ]
+        if not np.isclose(setpoint / 2, threshold, rtol=0.05):
+            self.parent.cam.threshold_energy.set(setpoint / 2)
+
+    def set_acquisition_params(self) -> None:
+        """Set acquisition parameters for the detector"""
+
+        # Set number of images and frames (frames is for internal burst of detector)
+        self.parent.cam.num_images.put(
+            int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger)
+        )
+        self.parent.cam.num_frames.put(1)
+
+        # Update the readout time of the detector
+        self.update_readout_time()
+
+    def create_directory(self, filepath: str) -> None:
+        """Create directory if it does not exist"""
+        os.makedirs(filepath, exist_ok=True)
+
+    def close_file_writer(self) -> None:
+        """
+        Close the file writer for pilatus_2
+
+        Delete the data from x12sa-pd-2
+
+        """
+        url = "http://x12sa-pd-2:8080/stream/pilatus_2"
+        try:
+            res = self.send_requests_delete(url=url)
+            if not res.ok:
+                res.raise_for_status()
+        except Exception as exc:
+            logger.info(f"Pilatus2 close threw Exception: {exc}")
+
+    def stop_file_writer(self) -> None:
+        """
+        Stop the file writer for pilatus_2
+
+        Runs on xbl-daq-34
+        """
+        url = "http://xbl-daq-34:8091/pilatus_2/stop"
+        res = self.send_requests_put(url=url)
+        if not res.ok:
+            res.raise_for_status()
+
     def send_requests_put(self, url: str, data: list = None, headers: dict = None) -> object:
         """
         Send a put request to the given url
@@ -298,14 +312,8 @@ class PilatusSetup(CustomDetectorMixin):
         """
         return requests.delete(url=url, headers=headers, timeout=5)
 
-    def pre_scan(self) -> None:
-        """
-        Pre_scan function call
-
-        This function is called just before the scan core.
-        Here it is used to arm the detector for the acquisition
-
-        """
+    def on_pre_scan(self) -> None:
+        """Prepare detector for scan"""
         self.arm_acquisition()
 
     def arm_acquisition(self) -> None:
@@ -314,43 +322,18 @@ class PilatusSetup(CustomDetectorMixin):
         # TODO is this sleep needed? to be tested with detector and for how long
         time.sleep(0.5)
 
-    def publish_file_location(self, done: bool = False, successful: bool = None) -> None:
-        """
-        Publish the filepath to REDIS and publish the event for the h5_converter
+    def on_unstage(self) -> None:
+        """Unstage the detector"""
+        pass
 
-        We publish two events here:
-        - file_event: event for the filewriter
-        - public_file: event for any secondary service (e.g. radial integ code)
-
-        Args:
-            done (bool): True if scan is finished
-            successful (bool): True if scan was successful
-        """
-        pipe = self.parent.connector.pipeline()
-        if successful is None:
-            msg = messages.FileMessage(
-                file_path=self.parent.filepath,
-                done=done,
-                metadata={"input_path": self.parent.filepath_raw},
-            )
-        else:
-            msg = messages.FileMessage(
-                file_path=self.parent.filepath,
-                done=done,
-                successful=successful,
-                metadata={"input_path": self.parent.filepath_raw},
-            )
-        self.parent.connector.set_and_publish(
-            MessageEndpoints.public_file(self.parent.scaninfo.scan_id, self.parent.name),
-            msg,
-            pipe=pipe,
+    def on_complete(self) -> None:
+        """Complete the scan"""
+        self.finished(timeout=self.parent.TIMEOUT_FOR_SIGNALS)
+        self.publish_file_location(
+            done=True, successful=True, metadata={"input_path": self.parent.filepath_raw}
         )
-        self.parent.connector.set_and_publish(
-            MessageEndpoints.file_event(self.parent.name), msg, pipe=pipe
-        )
-        pipe.execute()
 
-    def finished(self) -> None:
+    def finished(self, timeout: int = 5) -> None:
         """Check if acquisition is finished."""
         # pylint: disable=protected-access
         # TODO: at the moment this relies on device.mcs.obj._staged attribute
@@ -359,7 +342,7 @@ class PilatusSetup(CustomDetectorMixin):
         ]
         if not self.wait_for_signals(
             signal_conditions=signal_conditions,
-            timeout=self.parent.timeout,
+            timeout=timeout,
             check_stopped=True,
             all_signals=True,
         ):
@@ -371,16 +354,21 @@ class PilatusSetup(CustomDetectorMixin):
         self.stop_detector()
         self.stop_detector_backend()
 
+    def on_stop(self) -> None:
+        """Stop detector"""
+        self.stop_detector()
+        self.stop_detector_backend()
+
     def stop_detector(self) -> None:
         """Stop detector"""
         self.parent.cam.acquire.put(0)
 
-    def check_scan_id(self) -> None:
-        """Checks if scan_id has changed and stops the scan if it has"""
-        old_scan_id = self.parent.scaninfo.scan_id
-        self.parent.scaninfo.load_scan_metadata()
-        if self.parent.scaninfo.scan_id != old_scan_id:
-            self.parent.stopped = True
+    def stop_detector_backend(self) -> None:
+        """Stop the file writer zmq service for pilatus_2"""
+        self.close_file_writer()
+        time.sleep(0.1)
+        self.stop_file_writer()
+        time.sleep(0.1)
 
 
 class PilatuscSAXS(PSIDetectorBase):
@@ -397,20 +385,16 @@ class PilatuscSAXS(PSIDetectorBase):
     """
 
     # Specify which functions are revealed to the user in BEC client
-    USER_ACCESS = ["describe"]
+    USER_ACCESS = []
 
     # specify Setup class
     custom_prepare_cls = PilatusSetup
     # specify minimum readout time for detector
     MIN_READOUT = 3e-3
+    TIMEOUT_FOR_SIGNALS = 5
     # specify class attributes
     cam = ADCpt(SLSDetectorCam, "cam1:")
 
-    def set_trigger(self, trigger_source: TriggerSource) -> None:
-        """Set trigger source for the detector"""
-        value = trigger_source
-        self.cam.trigger_mode.put(value)
-
 
 if __name__ == "__main__":
     pilatus_2 = PilatuscSAXS(name="pilatus_2", prefix="X12SA-ES-PILATUS300K:", sim_mode=True)

csaxs_bec/devices/galil/galil_ophyd.py

@@ -1,604 +0,0 @@
-import functools
-import threading
-import time
-
-import numpy as np
-from bec_lib import bec_logger
-from ophyd import Component as Cpt
-from ophyd import Device, PositionerBase, Signal
-from ophyd.status import wait as status_wait
-from ophyd.utils import LimitError, ReadOnlyError
-from ophyd_devices.utils.controller import Controller, threadlocked
-from ophyd_devices.utils.socket import SocketIO, SocketSignal, raise_if_disconnected
-from prettytable import PrettyTable
-
-logger = bec_logger.logger
-
-
-class GalilCommunicationError(Exception):
-    pass
-
-
-class GalilError(Exception):
-    pass
-
-
-class BECConfigError(Exception):
-    pass
-
-
-def retry_once(fcn):
-    """Decorator to rerun a function in case a Galil communication error was raised. This may happen if the buffer was not empty."""
-
-    @functools.wraps(fcn)
-    def wrapper(self, *args, **kwargs):
-        try:
-            val = fcn(self, *args, **kwargs)
-        except (GalilCommunicationError, GalilError):
-            val = fcn(self, *args, **kwargs)
-        return val
-
-    return wrapper
-
-
-class GalilController(Controller):
-    _axes_per_controller = 8
-    USER_ACCESS = [
-        "describe",
-        "show_running_threads",
-        "galil_show_all",
-        "socket_put_and_receive",
-        "socket_put_confirmed",
-        "lgalil_is_air_off_and_orchestra_enabled",
-        "drive_axis_to_limit",
-        "find_reference",
-        "get_motor_limit_switch",
-        "is_motor_on",
-        "all_axes_referenced",
-    ]
-
-    @threadlocked
-    def socket_put(self, val: str) -> None:
-        self.sock.put(f"{val}\r".encode())
-
-    @threadlocked
-    def socket_get(self) -> str:
-        return self.sock.receive().decode()
-
-    @retry_once
-    @threadlocked
-    def socket_put_and_receive(self, val: str, remove_trailing_chars=True) -> str:
-        self.socket_put(val)
-        if remove_trailing_chars:
-            return self._remove_trailing_characters(self.sock.receive().decode())
-        return self.socket_get()
-
-    @retry_once
-    def socket_put_confirmed(self, val: str) -> None:
-        """Send message to controller and ensure that it is received by checking that the socket receives a colon.
-
-        Args:
-            val (str): Message that should be sent to the socket
-
-        Raises:
-            GalilCommunicationError: Raised if the return value is not a colon.
-
-        """
-        return_val = self.socket_put_and_receive(val)
-        if return_val != ":":
-            raise GalilCommunicationError(
-                f"Expected return value of ':' but instead received {return_val}"
-            )
-
-    def is_axis_moving(self, axis_Id, axis_Id_numeric) -> bool:
-        if axis_Id is None and axis_Id_numeric is not None:
-            axis_Id = self.axis_Id_numeric_to_alpha(axis_Id_numeric)
-        is_moving = bool(float(self.socket_put_and_receive(f"MG_BG{axis_Id}")) != 0)
-        backlash_is_active = bool(float(self.socket_put_and_receive(f"MGbcklact[axis]")) != 0)
-        return bool(
-            is_moving or backlash_is_active or self.is_thread_active(0) or self.is_thread_active(2)
-        )
-
-    def is_thread_active(self, thread_id: int) -> bool:
-        val = float(self.socket_put_and_receive(f"MG_XQ{thread_id}"))
-        if val == -1:
-            return False
-        return True
-
-    def _remove_trailing_characters(self, var) -> str:
-        if len(var) > 1:
-            return var.split("\r\n")[0]
-        return var
-
-    def stop_all_axes(self) -> str:
-        return self.socket_put_and_receive(f"XQ#STOP,1")
-
-    def lgalil_is_air_off_and_orchestra_enabled(self) -> bool:
-        # TODO: move this to the LamNI-specific controller
-        rt_not_blocked_by_galil = bool(self.socket_put_and_receive(f"MG@OUT[9]"))
-        air_off = bool(self.socket_put_and_receive(f"MG@OUT[13]"))
-        return rt_not_blocked_by_galil and air_off
-
-    def axis_is_referenced(self, axis_Id_numeric) -> bool:
-        return bool(float(self.socket_put_and_receive(f"MG axisref[{axis_Id_numeric}]").strip()))
-
-    def all_axes_referenced(self) -> bool:
-        """
-        Check if all axes are referenced.
-        """
-        return bool(float(self.socket_put_and_receive("MG allaxref").strip()))
-
-    def drive_axis_to_limit(self, axis_Id_numeric: int, direction: str) -> None:
-        """
-        Drive an axis to the limit in a specified direction.
-
-        Args:
-            axis_Id_numeric (int): Axis number
-            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.
-        """
-        if direction == "forward":
-            direction_flag = 1
-        elif direction == "reverse":
-            direction_flag = -1
-        else:
-            raise ValueError(f"Invalid direction {direction}")
-
-        self.socket_put_confirmed(f"naxis={axis_Id_numeric}")
-        self.socket_put_confirmed(f"ndir={direction_flag}")
-        self.socket_put_confirmed("XQ#NEWPAR")
-        time.sleep(0.005)
-        self.socket_put_confirmed("XQ#FES")
-        time.sleep(0.01)
-        while self.is_axis_moving(None, axis_Id_numeric):
-            time.sleep(0.01)
-
-        axis_Id = self.axis_Id_numeric_to_alpha(axis_Id_numeric)
-        # check if we actually hit the limit
-        if direction == "forward":
-            limit = self.get_motor_limit_switch(axis_Id)[1]
-        elif direction == "reverse":
-            limit = self.get_motor_limit_switch(axis_Id)[0]
-
-        if not limit:
-            raise GalilError(f"Failed to drive axis {axis_Id}/{axis_Id_numeric} to limit.")
-
-    def find_reference(self, axis_Id_numeric: int) -> None:
-        """
-        Find the reference of an axis.
-
-        Args:
-            axis_Id_numeric (int): Axis number
-        """
-        self.socket_put_confirmed(f"naxis={axis_Id_numeric}")
-        self.socket_put_and_receive("XQ#NEWPAR")
-        self.socket_put_confirmed("XQ#FRM")
-        time.sleep(0.1)
-        while self.is_axis_moving(None, axis_Id_numeric):
-            time.sleep(0.1)
-
-        if not self.axis_is_referenced(axis_Id_numeric):
-            raise GalilError(f"Failed to find reference of axis {axis_Id_numeric}.")
-
-        logger.info(f"Successfully found reference of axis {axis_Id_numeric}.")
-
-    def show_running_threads(self) -> None:
-        t = PrettyTable()
-        t.title = f"Threads on {self.sock.host}:{self.sock.port}"
-        t.field_names = [str(ax) for ax in range(self._axes_per_controller)]
-        t.add_row(
-            [
-                "active" if self.is_thread_active(t) else "inactive"
-                for t in range(self._axes_per_controller)
-            ]
-        )
-        print(t)
-
-    def is_motor_on(self, axis_Id) -> bool:
-        return not bool(float(self.socket_put_and_receive(f"MG _MO{axis_Id}").strip()))
-
-    def get_motor_limit_switch(self, axis_Id) -> list:
-        """
-        Get the status of the motor limit switches.
-
-        Args:
-            axis_Id (str): Axis identifier (e.g. 'A', 'B', 'C', ...)
-
-        Returns:
-            list: List of two booleans indicating if the low and high limit switch is active, respectively.
-        """
-        ret = self.socket_put_and_receive(f"MG _LR{axis_Id}, _LF{axis_Id}")
-        low, high = ret.strip().split(" ")
-        return [not bool(float(low)), not bool(float(high))]
-
-    def describe(self) -> None:
-        t = PrettyTable()
-        t.title = f"{self.__class__.__name__} on {self.sock.host}:{self.sock.port}"
-        t.field_names = [
-            "Axis",
-            "Name",
-            "Connected",
-            "Referenced",
-            "Motor On",
-            "Limits",
-            "Position",
-        ]
-        for ax in range(self._axes_per_controller):
-            axis = self._axis[ax]
-            if axis is not None:
-                t.add_row(
-                    [
-                        f"{axis.axis_Id_numeric}/{axis.axis_Id}",
-                        axis.name,
-                        axis.connected,
-                        self.axis_is_referenced(axis.axis_Id_numeric),
-                        self.is_motor_on(axis.axis_Id),
-                        self.get_motor_limit_switch(axis.axis_Id),
-                        axis.readback.read().get(axis.name).get("value"),
-                    ]
-                )
-            else:
-                t.add_row([None for t in t.field_names])
-        print(t)
-
-        self.show_running_threads()
-
-    def galil_show_all(self) -> None:
-        for controller in self._controller_instances.values():
-            if isinstance(controller, GalilController):
-                controller.describe()
-
-    @staticmethod
-    def axis_Id_to_numeric(axis_Id: str) -> int:
-        return ord(axis_Id.lower()) - 97
-
-    @staticmethod
-    def axis_Id_numeric_to_alpha(axis_Id_numeric: int) -> str:
-        return (chr(axis_Id_numeric + 97)).capitalize()
-
-
-class GalilSignalBase(SocketSignal):
-    def __init__(self, signal_name, **kwargs):
-        self.signal_name = signal_name
-        super().__init__(**kwargs)
-        self.controller = self.parent.controller
-        self.sock = self.parent.controller.sock
-
-
-class GalilSignalRO(GalilSignalBase):
-    def __init__(self, signal_name, **kwargs):
-        super().__init__(signal_name, **kwargs)
-        self._metadata["write_access"] = False
-
-    def _socket_set(self, val):
-        raise ReadOnlyError("Read-only signals cannot be set")
-
-
-class GalilReadbackSignal(GalilSignalRO):
-    @retry_once
-    @threadlocked
-    def _socket_get(self) -> float:
-        """Get command for the readback signal
-
-        Returns:
-            float: Readback value after adjusting for sign and motor resolution.
-        """
-
-        current_pos = float(self.controller.socket_put_and_receive(f"TD{self.parent.axis_Id}"))
-        current_pos *= self.parent.sign
-        step_mm = self.parent.motor_resolution.get()
-        return current_pos / step_mm
-
-    def read(self):
-        self._metadata["timestamp"] = time.time()
-        val = super().read()
-        if self.parent.axis_Id_numeric == 2:
-            try:
-                rt = self.parent.device_manager.devices[self.parent.rt]
-                if rt.enabled:
-                    rt.obj.controller.set_rotation_angle(val[self.parent.name]["value"])
-            except KeyError:
-                logger.warning("Failed to set RT value during readback.")
-        return val
-
-
-class GalilSetpointSignal(GalilSignalBase):
-    setpoint = 0
-
-    def _socket_get(self) -> float:
-        """Get command for receiving the setpoint / target value.
-        The value is not pulled from the controller but instead just the last setpoint used.
-
-        Returns:
-            float: setpoint / target value
-        """
-        return self.setpoint * self.parent.sign
-
-    @retry_once
-    @threadlocked
-    def _socket_set(self, val: float) -> None:
-        """Set a new target value / setpoint value. Before submission, the target value is adjusted for the axis' sign.
-        Furthermore, it is ensured that all axes are referenced before a new setpoint is submitted.
-
-        Args:
-            val (float): Target value / setpoint value
-
-        Raises:
-            GalilError: Raised if not all axes are referenced.
-
-        """
-        target_val = val * self.parent.sign
-        self.setpoint = target_val
-        axes_referenced = self.controller.all_axes_referenced()
-        if axes_referenced:
-            while self.controller.is_thread_active(0):
-                time.sleep(0.1)
-
-            if self.parent.axis_Id_numeric == 2:
-                angle_status = self.parent.device_manager.devices[
-                    self.parent.rt
-                ].obj.controller.feedback_status_angle_lamni()
-
-                if angle_status:
-                    self.controller.socket_put_confirmed("angintf=1")
-
-            self.controller.socket_put_confirmed(f"naxis={self.parent.axis_Id_numeric}")
-            self.controller.socket_put_confirmed(f"ntarget={target_val:.3f}")
-            self.controller.socket_put_confirmed("movereq=1")
-            self.controller.socket_put_confirmed("XQ#NEWPAR")
-            while self.controller.is_thread_active(0):
-                time.sleep(0.005)
-        else:
-            raise GalilError("Not all axes are referenced.")
-
-
-class GalilMotorResolution(GalilSignalRO):
-    @retry_once
-    @threadlocked
-    def _socket_get(self):
-        return float(
-            self.controller.socket_put_and_receive(f"MG stppermm[{self.parent.axis_Id_numeric}]")
-        )
-
-
-class GalilMotorIsMoving(GalilSignalRO):
-    @threadlocked
-    def _socket_get(self):
-        return self.controller.is_axis_moving(self.parent.axis_Id, self.parent.axis_Id_numeric)
-
-    def get(self):
-        val = super().get()
-        if val is not None:
-            self._run_subs(sub_type=self.SUB_VALUE, value=val, timestamp=time.time())
-        return val
-
-
-class GalilAxesReferenced(GalilSignalRO):
-    @threadlocked
-    def _socket_get(self):
-        return self.controller.all_axes_referenced()
-
-
-class GalilMotor(Device, PositionerBase):
-    USER_ACCESS = ["controller"]
-    readback = Cpt(GalilReadbackSignal, signal_name="readback", kind="hinted")
-    user_setpoint = Cpt(GalilSetpointSignal, signal_name="setpoint")
-    motor_resolution = Cpt(GalilMotorResolution, signal_name="resolution", kind="config")
-    motor_is_moving = Cpt(GalilMotorIsMoving, signal_name="motor_is_moving", kind="normal")
-    all_axes_referenced = Cpt(GalilAxesReferenced, signal_name="all_axes_referenced", kind="config")
-    high_limit_travel = Cpt(Signal, value=0, kind="omitted")
-    low_limit_travel = Cpt(Signal, value=0, kind="omitted")
-
-    SUB_READBACK = "readback"
-    SUB_CONNECTION_CHANGE = "connection_change"
-    _default_sub = SUB_READBACK
-
-    def __init__(
-        self,
-        axis_Id,
-        prefix="",
-        *,
-        name,
-        kind=None,
-        read_attrs=None,
-        configuration_attrs=None,
-        parent=None,
-        host="mpc2680.psi.ch",
-        port=8081,
-        limits=None,
-        sign=1,
-        socket_cls=SocketIO,
-        device_manager=None,
-        **kwargs,
-    ):
-        self.controller = GalilController(socket_cls=socket_cls, socket_host=host, socket_port=port)
-        self.axis_Id = axis_Id
-        self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
-        self.sign = sign
-        self.tolerance = kwargs.pop("tolerance", 0.5)
-        self.device_mapping = kwargs.pop("device_mapping", {})
-        self.device_manager = device_manager
-
-        if len(self.device_mapping) > 0 and self.device_manager is None:
-            raise BECConfigError(
-                "device_mapping has been specified but the device_manager cannot be accessed."
-            )
-        self.rt = self.device_mapping.get("rt")
-
-        super().__init__(
-            prefix,
-            name=name,
-            kind=kind,
-            read_attrs=read_attrs,
-            configuration_attrs=configuration_attrs,
-            parent=parent,
-            **kwargs,
-        )
-        self.readback.name = self.name
-        self.controller.subscribe(
-            self._update_connection_state, event_type=self.SUB_CONNECTION_CHANGE
-        )
-        self._update_connection_state()
-        # self.readback.subscribe(self._forward_readback, event_type=self.readback.SUB_VALUE)
-
-        if limits is not None:
-            assert len(limits) == 2
-            self.low_limit_travel.put(limits[0])
-            self.high_limit_travel.put(limits[1])
-
-    @property
-    def limits(self):
-        return (self.low_limit_travel.get(), self.high_limit_travel.get())
-
-    @property
-    def low_limit(self):
-        return self.limits[0]
-
-    @property
-    def high_limit(self):
-        return self.limits[1]
-
-    def check_value(self, pos):
-        """Check that the position is within the soft limits"""
-        low_limit, high_limit = self.limits
-
-        if low_limit < high_limit and not (low_limit <= pos <= high_limit):
-            raise LimitError(f"position={pos} not within limits {self.limits}")
-
-    def _update_connection_state(self, **kwargs):
-        for walk in self.walk_signals():
-            walk.item._metadata["connected"] = self.controller.connected
-
-    def _forward_readback(self, **kwargs):
-        kwargs.pop("sub_type")
-        self._run_subs(sub_type="readback", **kwargs)
-
-    @raise_if_disconnected
-    def move(self, position, wait=True, **kwargs):
-        """Move to a specified position, optionally waiting for motion to
-        complete.
-
-        Parameters
-        ----------
-        position
-            Position to move to
-        moved_cb : callable
-            Call this callback when movement has finished. This callback must
-            accept one keyword argument: 'obj' which will be set to this
-            positioner instance.
-        timeout : float, optional
-            Maximum time to wait for the motion. If None, the default timeout
-            for this positioner is used.
-
-        Returns
-        -------
-        status : MoveStatus
-
-        Raises
-        ------
-        TimeoutError
-            When motion takes longer than `timeout`
-        ValueError
-            On invalid positions
-        RuntimeError
-            If motion fails other than timing out
-        """
-        self._started_moving = False
-        timeout = kwargs.pop("timeout", 100)
-        status = super().move(position, timeout=timeout, **kwargs)
-        self.user_setpoint.put(position, wait=False)
-
-        def move_and_finish():
-            while self.motor_is_moving.get():
-                logger.info("motor is moving")
-                val = self.readback.read()
-                self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
-                time.sleep(0.1)
-            val = self.readback.read()
-            success = np.isclose(val[self.name]["value"], position, atol=self.tolerance)
-
-            if not success:
-                print(" stop")
-            self._done_moving(success=success)
-            logger.info("Move finished")
-
-        threading.Thread(target=move_and_finish, daemon=True).start()
-        try:
-            if wait:
-                status_wait(status)
-        except KeyboardInterrupt:
-            self.stop()
-            raise
-
-        return status
-
-    @property
-    def axis_Id(self):
-        return self._axis_Id_alpha
-
-    @axis_Id.setter
-    def axis_Id(self, val):
-        if isinstance(val, str):
-            if len(val) != 1:
-                raise ValueError(f"Only single-character axis_Ids are supported.")
-            self._axis_Id_alpha = val
-            self._axis_Id_numeric = self.controller.axis_Id_to_numeric(val)
-        else:
-            raise TypeError(f"Expected value of type str but received {type(val)}")
-
-    @property
-    def axis_Id_numeric(self):
-        return self._axis_Id_numeric
-
-    @axis_Id_numeric.setter
-    def axis_Id_numeric(self, val):
-        if isinstance(val, int):
-            if val > 26:
-                raise ValueError(f"Numeric value exceeds supported range.")
-            self._axis_Id_alpha = self.controller.axis_Id_numeric_to_alpha(val)
-            self._axis_Id_numeric = val
-        else:
-            raise TypeError(f"Expected value of type int but received {type(val)}")
-
-    @property
-    def egu(self):
-        """The engineering units (EGU) for positions"""
-        return "mm"
-
-    def stage(self) -> list[object]:
-        return super().stage()
-
-    def unstage(self) -> list[object]:
-        return super().unstage()
-
-    def stop(self, *, success=False):
-        self.controller.stop_all_axes()
-        return super().stop(success=success)
-
-
-if __name__ == "__main__":
-    # pytest: skip-file
-    mock = False
-    if not mock:
-        leyey = GalilMotor("H", name="leyey", host="mpc2680.psi.ch", port=8081, sign=-1)
-        leyey.stage()
-        status = leyey.move(0, wait=True)
-        status = leyey.move(10, wait=True)
-        leyey.read()
-
-        leyey.get()
-        leyey.describe()
-
-        leyey.unstage()
-    else:
-        from ophyd_devices.utils.socket import SocketMock
-
-        leyex = GalilMotor(
-            "G", name="leyex", host="mpc2680.psi.ch", port=8081, socket_cls=SocketMock
-        )
-        leyey = GalilMotor(
-            "H", name="leyey", host="mpc2680.psi.ch", port=8081, socket_cls=SocketMock
-        )
-        leyex.stage()
-        # leyey.stage()
-
-        leyex.controller.galil_show_all()

csaxs_bec/devices/ids_cameras/ids_camera.py

@@ -0,0 +1,312 @@
+import threading
+import time
+
+import numpy as np
+from ophyd import Component as Cpt
+from ophyd import DeviceStatus, Kind, StatusBase
+from ophyd_devices import PSIDeviceBase
+from ophyd_devices.utils.bec_signals import PreviewSignal
+
+try:
+    from pyueye import ueye
+except ImportError:
+    # The pyueye library is not installed or doesn't provide the necessary c libs
+    ueye = None
+
+
+class IDSCamera(PSIDeviceBase):
+    USER_ACCESS = ["start_live_mode", "stop_live_mode"]
+
+    image_data = Cpt(PreviewSignal, value=np.empty((100, 100)), kind=Kind.omitted)
+
+    def __init__(
+        self,
+        prefix="",
+        *,
+        name: str,
+        camera_ID: int,
+        bits_per_pixel: int,
+        channels: int,
+        m_n_colormode: int,
+        kind=None,
+        device_manager=None,
+        **kwargs,
+    ):
+
+        super().__init__(
+            prefix=prefix, name=name, kind=kind, device_manager=device_manager, **kwargs
+        )
+        self.camera_ID = camera_ID
+        self.bits_per_pixel = bits_per_pixel
+        self.bytes_per_pixel = None
+        self.channels = channels
+        self._m_n_colormode_input = m_n_colormode
+        self.m_n_colormode = None
+        self.ueye = ueye
+        self.h_cam = None
+        self.s_info = None
+        self.data_thread = None
+        self.c_info = None
+        self.pc_image_memory = None
+        self.mem_id = None
+        self.rect_aoi = None
+        self.pitch = None
+        self.n_bits_per_pixel = None
+        self.width = None
+        self.height = None
+        self.thread_event = threading.Event()
+        self.data_thread = None
+
+    def start_backend(self):
+        if self.ueye is None:
+            raise ImportError("The pyueye library is not installed.")
+        self.h_cam = self.ueye.HIDS(
+            self.camera_ID
+        )  # 0: first available camera;  1-254: The camera with the specified camera ID
+        self.s_info = self.ueye.SENSORINFO()
+        self.c_info = self.ueye.CAMINFO()
+        self.pc_image_memory = self.ueye.c_mem_p()
+        self.mem_id = self.ueye.int()
+        self.rect_aoi = self.ueye.IS_RECT()
+        self.pitch = self.ueye.INT()
+        self.n_bits_per_pixel = self.ueye.INT(
+            self.bits_per_pixel
+        )  # 24: bits per pixel for color mode; take 8 bits per pixel for monochrome
+        self.m_n_colormode = self.ueye.INT(
+            self._m_n_colormode_input
+        )  # Y8/RGB16/RGB24/REG32 (1 for our color cameras)
+        self.bytes_per_pixel = int(self.n_bits_per_pixel / 8)
+
+        # Starts the driver and establishes the connection to the camera
+        ret = self.ueye.is_InitCamera(self.h_cam, None)
+        if ret != self.ueye.IS_SUCCESS:
+            print("is_InitCamera ERROR")
+
+        # Reads out the data hard-coded in the non-volatile camera memory and writes it to the data structure that c_info points to
+        ret = self.ueye.is_GetCameraInfo(self.h_cam, self.c_info)
+        if ret != self.ueye.IS_SUCCESS:
+            print("is_GetCameraInfo ERROR")
+
+        # You can query additional information about the sensor type used in the camera
+        ret = self.ueye.is_GetSensorInfo(self.h_cam, self.s_info)
+        if ret != self.ueye.IS_SUCCESS:
+            print("is_GetSensorInfo ERROR")
+
+        ret = self.ueye.is_ResetToDefault(self.h_cam)
+        if ret != self.ueye.IS_SUCCESS:
+            print("is_ResetToDefault ERROR")
+
+        # Set display mode to DIB
+        ret = self.ueye.is_SetDisplayMode(self.h_cam, self.ueye.IS_SET_DM_DIB)
+
+        # Set the right color mode
+        if (
+            int.from_bytes(self.s_info.nColorMode.value, byteorder="big")
+            == self.ueye.IS_COLORMODE_BAYER
+        ):
+            # setup the color depth to the current windows setting
+            self.ueye.is_GetColorDepth(self.h_cam, self.n_bits_per_pixel, self.m_n_colormode)
+            bytes_per_pixel = int(self.n_bits_per_pixel / 8)
+            print("IS_COLORMODE_BAYER: ")
+            print("\tm_n_colormode: \t\t", self.m_n_colormode)
+            print("\tn_bits_per_pixel: \t\t", self.n_bits_per_pixel)
+            print("\tbytes_per_pixel: \t\t", bytes_per_pixel)
+            print()
+
+        elif (
+            int.from_bytes(self.s_info.nColorMode.value, byteorder="big")
+            == self.ueye.IS_COLORMODE_CBYCRY
+        ):
+            # for color camera models use RGB32 mode
+            m_n_colormode = self.ueye.IS_CM_BGRA8_PACKED
+            n_bits_per_pixel = self.ueye.INT(32)
+            bytes_per_pixel = int(self.n_bits_per_pixel / 8)
+            print("IS_COLORMODE_CBYCRY: ")
+            print("\tm_n_colormode: \t\t", m_n_colormode)
+            print("\tn_bits_per_pixel: \t\t", n_bits_per_pixel)
+            print("\tbytes_per_pixel: \t\t", bytes_per_pixel)
+            print()
+
+        elif (
+            int.from_bytes(self.s_info.nColorMode.value, byteorder="big")
+            == self.ueye.IS_COLORMODE_MONOCHROME
+        ):
+            # for color camera models use RGB32 mode
+            m_n_colormode = self.ueye.IS_CM_MONO8
+            n_bits_per_pixel = self.ueye.INT(8)
+            bytes_per_pixel = int(n_bits_per_pixel / 8)
+            print("IS_COLORMODE_MONOCHROME: ")
+            print("\tm_n_colormode: \t\t", m_n_colormode)
+            print("\tn_bits_per_pixel: \t\t", n_bits_per_pixel)
+            print("\tbytes_per_pixel: \t\t", bytes_per_pixel)
+            print()
+
+        else:
+            # for monochrome camera models use Y8 mode
+            m_n_colormode = self.ueye.IS_CM_MONO8
+            n_bits_per_pixel = self.ueye.INT(8)
+            bytes_per_pixel = int(n_bits_per_pixel / 8)
+            print("else")
+
+        # Can be used to set the size and position of an "area of interest"(AOI) within an image
+        ret = self.ueye.is_AOI(
+            self.h_cam,
+            self.ueye.IS_AOI_IMAGE_GET_AOI,
+            self.rect_aoi,
+            self.ueye.sizeof(self.rect_aoi),
+        )
+        if ret != self.ueye.IS_SUCCESS:
+            print("is_AOI ERROR")
+
+        self.width = self.rect_aoi.s32Width
+        self.height = self.rect_aoi.s32Height
+
+        # Prints out some information about the camera and the sensor
+        print("Camera model:\t\t", self.s_info.strSensorName.decode("utf-8"))
+        print("Camera serial no.:\t", self.c_info.SerNo.decode("utf-8"))
+        print("Maximum image width:\t", self.width)
+        print("Maximum image height:\t", self.height)
+        print()
+
+        # ---------------------------------------------------------------------------------------------------------------------------------------
+
+        # Allocates an image memory for an image having its dimensions defined by width and height and its color depth defined by n_bits_per_pixel
+        ret = self.ueye.is_AllocImageMem(
+            self.h_cam,
+            self.width,
+            self.height,
+            self.n_bits_per_pixel,
+            self.pc_image_memory,
+            self.mem_id,
+        )
+        if ret != self.ueye.IS_SUCCESS:
+            print("is_AllocImageMem ERROR")
+        else:
+            # Makes the specified image memory the active memory
+            ret = self.ueye.is_SetImageMem(self.h_cam, self.pc_image_memory, self.mem_id)
+            if ret != self.ueye.IS_SUCCESS:
+                print("is_SetImageMem ERROR")
+            else:
+                # Set the desired color mode
+                ret = self.ueye.is_SetColorMode(self.h_cam, self.m_n_colormode)
+
+        # Activates the camera's live video mode (free run mode)
+        ret = self.ueye.is_CaptureVideo(self.h_cam, self.ueye.IS_DONT_WAIT)
+        if ret != self.ueye.IS_SUCCESS:
+            print("is_CaptureVideo ERROR")
+
+        # Enables the queue mode for existing image memory sequences
+        ret = self.ueye.is_InquireImageMem(
+            self.h_cam,
+            self.pc_image_memory,
+            self.mem_id,
+            self.width,
+            self.height,
+            self.n_bits_per_pixel,
+            self.pitch,
+        )
+        if ret != self.ueye.IS_SUCCESS:
+            print("is_InquireImageMem ERROR")
+        else:
+            print("Press q to leave the programm")
+        # startmeasureframerate = True
+        # Gain = False
+
+        # Start live mode of camera immediately
+        self.start_live_mode()
+
+    def _start_data_thread(self):
+        self.data_thread = threading.Thread(target=self._receive_data_from_camera, daemon=True)
+        self.data_thread.start()
+
+    def _receive_data_from_camera(self):
+        while not self.thread_event.is_set():
+            if self.ueye is None:
+                print("pyueye library not available.")
+                return
+            # In order to display the image in an OpenCV window we need to...
+            # ...extract the data of our image memory
+            array = self.ueye.get_data(
+                self.pc_image_memory,
+                self.width,
+                self.height,
+                self.n_bits_per_pixel,
+                self.pitch,
+                copy=False,
+            )
+
+            # bytes_per_pixel = int(n_bits_per_pixel / 8)
+
+            # ...reshape it in an numpy array...
+            frame = np.reshape(array, (self.height.value, self.width.value, self.bytes_per_pixel))
+            self.image_data.put(frame)
+
+            time.sleep(0.1)
+
+    def wait_for_connection(self, all_signals=False, timeout=10):
+        if ueye is None:
+            raise ImportError(
+                "The pyueye library is not installed or doesn't provide the necessary c libs"
+            )
+        super().wait_for_connection(all_signals, timeout)
+
+    def start_live_mode(self):
+        if self.data_thread is not None:
+            self.stop_live_mode()
+        self._start_data_thread()
+
+    def stop_live_mode(self):
+        """Stopping the camera live mode."""
+        self.thread_event.set()
+        if self.data_thread is not None:
+            self.data_thread.join()
+        self.thread_event.clear()
+        self.data_thread = None
+
+    ########################################
+    #  Beamline Specific Implementations   #
+    ########################################
+
+    def on_init(self) -> None:
+        """
+        Called when the device is initialized.
+
+        No signals are connected at this point. If you like to
+        set default values on signals, please use on_connected instead.
+        """
+
+    def on_connected(self) -> None:
+        """
+        Called after the device is connected and its signals are connected.
+        Default values for signals should be set here.
+        """
+        self.start_backend()
+
+    def on_stage(self) -> DeviceStatus | StatusBase | None:
+        """
+        Called while staging the device.
+
+        Information about the upcoming scan can be accessed from the scan_info (self.scan_info.msg) object.
+        """
+
+    def on_unstage(self) -> DeviceStatus | StatusBase | None:
+        """Called while unstaging the device."""
+
+    def on_pre_scan(self) -> DeviceStatus | StatusBase | None:
+        """Called right before the scan starts on all devices automatically."""
+
+    def on_trigger(self) -> DeviceStatus | StatusBase | None:
+        """Called when the device is triggered."""
+
+    def on_complete(self) -> DeviceStatus | StatusBase | None:
+        """Called to inquire if a device has completed a scans."""
+
+    def on_kickoff(self) -> DeviceStatus | StatusBase | None:
+        """Called to kickoff a device for a fly scan. Has to be called explicitly."""
+
+    def on_stop(self) -> None:
+        """Called when the device is stopped."""
+
+    def on_destroy(self) -> None:
+        """Called when the device is destroyed. Cleanup resources here."""
+        self.stop_live_mode()

csaxs_bec/devices/jungfraujoch/jungfrau_joch_client.py

@@ -0,0 +1,153 @@
+import enum
+import math
+
+import jfjoch_client
+from bec_lib.logger import bec_logger
+
+logger = bec_logger.logger
+
+
+class JungfrauJochClientError(Exception):
+    """Base class for exceptions in this module."""
+
+
+class DetectorState(enum.StrEnum):
+    """Detector states for Jungfrau Joch detector
+    ['Inactive', 'Idle', 'Busy', 'Measuring', 'Pedestal', 'Error']
+    """
+
+    INACTIVE = "Inactive"
+    IDLE = "Idle"
+    BUSY = "Busy"
+    MEASURING = "Measuring"
+    PEDESTAL = "Pedestal"
+    ERROR = "Error"
+
+
+class ResponseWaitDone(enum.IntEnum):
+    """Response state for Jungfrau Joch detector wait till done"""
+
+    DETECTOR_IDLE = 200
+    TIMEOUT_PARAM_OUT_OF_RANGE = 400
+    JUNGFRAU_ERROR = 500
+    DETECTOR_INACTIVE = 502
+    TIMEOUT_REACHED = 504
+
+
+class JungfrauJochClient:
+    """Thin wrapper around the Jungfrau Joch API client"""
+
+    def __init__(self, host: str = "http://sls-jfjoch-001:8080") -> None:
+        self._initialised = False
+        configuration = jfjoch_client.Configuration(host=host)
+        api_client = jfjoch_client.ApiClient(configuration)
+        self.api = jfjoch_client.DefaultApi(api_client)
+
+    @property
+    def initialised(self) -> bool:
+        """Check if jfj is connected and ready to receive commands"""
+        return self._initialised
+
+    @initialised.setter
+    def initialised(self, value: bool) -> None:
+        """Set the connected status"""
+        self._initialised = value
+
+    def get_jungfrau_joch_status(self) -> DetectorState:
+        """Get the status of JungfrauJoch"""
+        return self.api.status_get().state
+
+    def connect_and_initialise(self, timeout: int = 5) -> None:
+        """Check if JungfrauJoch is connected and ready to receive commands"""
+        status = self.api.status_get().state
+        if status != DetectorState.IDLE:
+            self.api.initialize_post()
+            self.wait_till_done(timeout)
+            self.initialised = True
+
+    def set_detector_settings(self, settings: dict | jfjoch_client.DatasetSettings) -> None:
+        """Set the detector settings. JungfrauJoch must be in IDLE, Error or Inactive state.
+        Note, the full settings have to be provided, otherwise the settings will be overwritten with default values.
+
+        Args:
+            settings (dict): dictionary of settings
+        """
+        state = self.api.status_get().state
+        if state not in [DetectorState.IDLE, DetectorState.ERROR, DetectorState.INACTIVE]:
+            raise JungfrauJochClientError(
+                f"Detector must be in IDLE, ERROR or INACTIVE state to set settings. Current state: {state}"
+            )
+
+        if isinstance(settings, dict):
+            settings = jfjoch_client.DatasetSettings(**settings)
+        self.api.config_detector_put(settings)
+
+    def set_mesaurement_settings(self, settings: dict | jfjoch_client.DatasetSettings) -> None:
+        """Set the measurement settings. JungfrauJoch must be in IDLE state.
+        The method call is blocking and JungfrauJoch will be ready to measure after the call resolves.
+
+        Please check the DataSettings class for the available settings.
+        The minimum required settings are:
+            beam_x_pxl: StrictFloat | StrictInt,
+            beam_y_pxl: StrictFloat | StrictInt,
+            detector_distance_mm: float | int,
+            incident_energy_keV: float | int,
+
+        Args:
+            settings (dict): dictionary of settings
+        """
+        state = self.api.status_get().state
+        if state != DetectorState.IDLE:
+            raise JungfrauJochClientError(
+                f"Detector must be in IDLE state to set settings. Current state: {state}"
+            )
+
+        if isinstance(settings, dict):
+            settings = jfjoch_client.DatasetSettings(**settings)
+        try:
+            res = self.api.start_post_with_http_info(dataset_settings=settings)
+            if res.status_code != 200:
+                logger.error(
+                    f"Error while setting measurement settings {settings}, response: {res}"
+                )
+                raise JungfrauJochClientError(
+                    f"Error while setting measurement settings  {settings}, response: {res}"
+                )
+        except Exception as e:
+            logger.error(
+                f"Error while setting measurement settings {settings}. Exception raised {e}"
+            )
+            raise JungfrauJochClientError(
+                f"Error while setting measurement settings {settings}. Exception raised {e}"
+            ) from e
+
+    def wait_till_done(self, timeout: int = 5) -> None:
+        """Wait until JungfrauJoch is done.
+
+        Args:
+            timeout (int): timeout in seconds
+        """
+        success = False
+        try:
+            response = self.api.wait_till_done_post_with_http_info(math.ceil(timeout / 2))
+            if response.status_code != ResponseWaitDone.DETECTOR_IDLE:
+                logger.info(
+                    f"Waitin for JungfrauJoch to be done, status: {ResponseWaitDone(response.status_code)}; response msg {response}"
+                )
+                response = self.api.wait_till_done_post_with_http_info(math.floor(timeout / 2))
+            if response.status_code == ResponseWaitDone.DETECTOR_IDLE:
+                success = True
+                return
+        except Exception as e:
+            logger.error(f"Error while waiting for JungfrauJoch to initialise: {e}")
+            raise JungfrauJochClientError(
+                f"Error while waiting for JungfrauJoch to initialise: {e}"
+            ) from e
+        else:
+            if success is False:
+                logger.error(
+                    f"Failed to initialise JungfrauJoch with status: {response.status_code}; response msg {response}"
+                )
+                raise JungfrauJochClientError(
+                    f"Failed to initialise JungfrauJoch with status: {response.status_code}; response msg {response}"
+                )

csaxs_bec/devices/npoint/npoint.py

@@ -1,12 +1,15 @@
 import functools
-import socket
 import threading
 import time
 
-from ophyd_devices.utils.controller import threadlocked
-from ophyd_devices.utils.socket import raise_if_disconnected
+import numpy as np
+from ophyd import Component as Cpt
+from ophyd import Device, PositionerBase, Signal, SignalRO
+from ophyd.status import wait as status_wait
+from ophyd.utils import LimitError, ReadOnlyError
+from ophyd_devices.utils.controller import Controller, threadlocked
+from ophyd_devices.utils.socket import SocketIO, SocketSignal, raise_if_disconnected
 from prettytable import PrettyTable
-from typeguard import typechecked
 
 
 def channel_checked(fcn):
@@ -14,81 +17,32 @@ def channel_checked(fcn):
 
     @functools.wraps(fcn)
     def wrapper(self, *args, **kwargs):
+        # pylint: disable=protected-access
         self._check_channel(args[0])
         return fcn(self, *args, **kwargs)
 
     return wrapper
 
 
-class SocketIO:
-    """SocketIO helper class for TCP IP connections"""
-
-    def __init__(self, sock=None):
-        self.is_open = False
-        if sock is None:
-            self.open()
-        else:
-            self.sock = sock
-
-    def connect(self, host, port):
-        print(f"connecting to {host} port {port}")
-        # self.sock.create_connection((host, port))
-        self.sock.connect((host, port))
-
-    def _put(self, msg_bytes):
-        return self.sock.send(msg_bytes)
-
-    def _recv(self, buffer_length=1024):
-        return self.sock.recv(buffer_length)
-
-    def _initialize_socket(self):
-        self.sock = socket.socket(socket.AF_INET, socket.SOCK_STREAM)
-        self.sock.settimeout(5)
-
-    def put(self, msg):
-        return self._put(msg)
-
-    def receive(self, buffer_length=1024):
-        return self._recv(buffer_length=buffer_length)
-
-    def open(self):
-        self._initialize_socket()
-        self.is_open = True
-
-    def close(self):
-        self.sock.close()
-        self.sock = None
-        self.is_open = False
+class NpointError(Exception):
+    """
+    Base class for Npoint errors.
+    """
 
 
-class NPointController:
-    _controller_instance = None
+class NPointController(Controller):
+    """
+    Controller for nPoint piezo stages. This class inherits from the Controller class
+    and provides a singleton interface to the nPoint controller.
+    """
 
-    NUM_CHANNELS = 3
+    _axes_per_controller = 3
     _read_single_loc_bit = "A0"
     _write_single_loc_bit = "A2"
     _trailing_bit = "55"
     _range_offset = "78"
     _channel_base = ["11", "83"]
 
-    def __init__(
-        self, comm_socket: SocketIO, server_ip: str = "129.129.99.87", server_port: int = 23
-    ) -> None:
-        self._lock = threading.RLock()
-        super().__init__()
-        self._server_and_port_name = (server_ip, server_port)
-        self.socket = comm_socket
-        self.connected = False
-
-    def __new__(cls, *args, **kwargs):
-        if not NPointController._controller_instance:
-            NPointController._controller_instance = object.__new__(cls)
-        return NPointController._controller_instance
-
-    @classmethod
-    def create(cls):
-        return cls(SocketIO())
-
     def show_all(self) -> None:
         """Display current status of all channels
 
@@ -98,54 +52,13 @@ class NPointController:
         if not self.connected:
             print("npoint controller is currently disabled.")
             return
-        print(f"Connected to controller at {self._server_and_port_name}")
+        print(f"Connected to controller at {self._socket_host}:{self._socket_port}")
         t = PrettyTable()
         t.field_names = ["Channel", "Range", "Position", "Target"]
-        for ii in range(self.NUM_CHANNELS):
-            t.add_row(
-                [ii, self._get_range(ii), self._get_current_pos(ii), self._get_target_pos(ii)]
-            )
+        for ii in range(self._axes_per_controller):
+            t.add_row([ii, self._get_range(ii), self.get_current_pos(ii), self.get_target_pos(ii)])
         print(t)
 
-    @threadlocked
-    def on(self) -> None:
-        """Enable the NPoint controller and open a new socket.
-
-        Raises:
-            TimeoutError: Raised if the socket connection raises a timeout.
-
-        Returns:
-            None
-        """
-        if self.connected:
-            print("You are already connected to the NPoint controller.")
-            return
-        if not self.socket.is_open:
-            self.socket.open()
-        try:
-            self.socket.connect(self._server_and_port_name[0], self._server_and_port_name[1])
-        except socket.timeout:
-            raise TimeoutError(
-                f"Failed to connect to the specified server and port {self._server_and_port_name}."
-            )
-        except OSError:
-            print("ERROR while connecting. Let's try again")
-            self.socket.close()
-            time.sleep(0.5)
-            self.socket.open()
-            self.socket.connect(self._server_and_port_name[0], self._server_and_port_name[1])
-        self.connected = True
-
-    @threadlocked
-    def off(self) -> None:
-        """Disable the controller and close the socket.
-
-        Returns:
-            None
-        """
-        self.socket.close()
-        self.connected = False
-
     @channel_checked
     def _get_range(self, channel: int) -> int:
         """Get the range of the specified channel axis.
@@ -174,7 +87,7 @@ class NPointController:
         return device_range
 
     @channel_checked
-    def _get_current_pos(self, channel: int) -> float:
+    def get_current_pos(self, channel: int) -> float:
         # for first channel: 0x11 83 13 34
         addr = self._channel_base.copy()
         addr.extend([f"{19 + 16 * channel:x}", "34"])
@@ -187,7 +100,7 @@ class NPointController:
         return pos
 
     @channel_checked
-    def _set_target_pos(self, channel: int, pos: float) -> None:
+    def set_target_pos(self, channel: int, pos: float) -> None:
         # for first channel: 0x11 83 12 18 00 00 00 00
         addr = self._channel_base.copy()
         addr.extend([f"{18 + channel * 16:x}", "18"])
@@ -199,7 +112,7 @@ class NPointController:
         self._put(send_buffer)
 
     @channel_checked
-    def _get_target_pos(self, channel: int) -> float:
+    def get_target_pos(self, channel: int) -> float:
         # for first channel: 0x11 83 12 18
         addr = self._channel_base.copy()
         addr.extend([f"{18 + channel * 16:x}", "18"])
@@ -214,17 +127,17 @@ class NPointController:
     def _set_servo(self, channel: int, enable: bool) -> None:
         print("Not tested")
         return
-        # for first channel: 0x11 83 10 84 00 00 00 00
-        addr = self._channel_base.copy()
-        addr.extend([f"{16 + channel * 16:x}", "84"])
+        # # for first channel: 0x11 83 10 84 00 00 00 00
+        # addr = self._channel_base.copy()
+        # addr.extend([f"{16 + channel * 16:x}", "84"])
 
-        if enable:
-            data = ["00"] * 3 + ["01"]
-        else:
-            data = ["00"] * 4
-        send_buffer = self.__write_single_location_buffer(addr, data)
+        # if enable:
+        #     data = ["00"] * 3 + ["01"]
+        # else:
+        #     data = ["00"] * 4
+        # send_buffer = self.__write_single_location_buffer(addr, data)
 
-        self._put(send_buffer)
+        # self._put(send_buffer)
 
     @channel_checked
     def _get_servo(self, channel: int) -> int:
@@ -250,7 +163,7 @@ class NPointController:
         """
 
         buffer = b"".join([bytes.fromhex(m) for m in buffer])
-        self.socket.put(buffer)
+        self.sock.put(buffer)
 
     @threadlocked
     def _put_and_receive(self, msg_hex_list: list) -> list:
@@ -264,8 +177,8 @@ class NPointController:
         """
 
         buffer = b"".join([bytes.fromhex(m) for m in msg_hex_list])
-        self.socket.put(buffer)
-        recv_msg = self.socket.receive()
+        self.sock.put(buffer)
+        recv_msg = self.sock.receive()
         recv_hex_list = [hex(m) for m in recv_msg]
         self._verify_received_msg(msg_hex_list, recv_hex_list)
         return recv_hex_list
@@ -293,9 +206,9 @@ class NPointController:
             raise RuntimeError("Connection failure. Please restart the controller.")
 
     def _check_channel(self, channel: int) -> None:
-        if channel >= self.NUM_CHANNELS:
+        if channel >= self._axes_per_controller:
             raise ValueError(
-                f"Channel {channel+1} exceeds the available number of channels ({self.NUM_CHANNELS})"
+                f"Channel {channel+1} exceeds the available number of channels ({self._axes_per_controller})"
             )
 
     @staticmethod
@@ -391,155 +304,285 @@ class NPointController:
             self.off()
 
 
-class NPointAxis:
-    def __init__(self, controller: NPointController, channel: int, name: str) -> None:
-        super().__init__()
-        self._axis_range = 100
-        self.controller = controller
-        self.channel = channel
-        self.name = name
-        self.controller._check_channel(channel)
-        self._settling_time = 0.1
+class NpointSignalBase(SocketSignal):
+    """
+    Base class for nPoint signals.
+    """
 
-        if self.settling_time == 0:
-            self.settling_time = 0.1
-            print(f"Setting the npoint settling time to {self.settling_time:.2f} s.")
-            print(
-                "You can set the settling time depending on the stage tuning\nusing the settling_time property."
-            )
-            print("This is the waiting time before the counting is done.")
+    def __init__(self, signal_name, **kwargs):
+        self.signal_name = signal_name
+        super().__init__(**kwargs)
+        self.controller: NPointController = self.parent.controller
+        self.sock = self.parent.controller.sock
 
-    def show_all(self) -> None:
-        self.controller.show_all()
 
-    @raise_if_disconnected
-    def get(self) -> float:
-        """Get current position for this channel.
+class NpointSignalRO(NpointSignalBase):
+    """
+    Base class for read-only signals.
+    """
 
-        Raises:
-            RuntimeError: Raised if channel is not connected.
+    def __init__(self, signal_name, **kwargs):
+        super().__init__(signal_name, **kwargs)
+        self._metadata["write_access"] = False
 
-        Returns:
-            float: position
+    @threadlocked
+    def _socket_set(self, val):
+        raise ReadOnlyError("Read-only signals cannot be set")
+
+
+class NpointReadbackSignal(NpointSignalRO):
+    """
+    Signal to read the current position of an nPoint piezo stage.
+    """
+
+    @threadlocked
+    def _socket_get(self):
+
+        return self.controller.get_current_pos(self.parent.axis_Id_numeric) * self.parent.sign
+
+
+class NpointSetpointSignal(NpointSignalBase):
+    """
+    Signal to set the target position of an nPoint piezo stage.
+    """
+
+    setpoint = 0
+
+    @threadlocked
+    def _socket_get(self):
+        return self.controller.get_target_pos(self.parent.axis_Id_numeric) * self.parent.sign
+
+    @threadlocked
+    def _socket_set(self, val):
+        target_val = val * self.parent.sign
+        self.setpoint = target_val
+        return self.controller.set_target_pos(
+            self.parent.axis_Id_numeric, target_val * self.parent.sign
+        )
+
+
+class NpointMotorIsMoving(SignalRO):
+    """
+    Signal to indicate whether the motor is currently moving or not.
+    """
+
+    def set_motor_is_moving(self, value: int) -> None:
         """
-        return self.controller._get_current_pos(self.channel)
-
-    @raise_if_disconnected
-    def get_target_pos(self) -> float:
-        """Get target position for this channel.
-
-        Raises:
-            RuntimeError: Raised if channel is not connected.
-
-        Returns:
-            float: position
-        """
-        return self.controller._get_target_pos(self.channel)
-
-    @raise_if_disconnected
-    @typechecked
-    def set(self, pos: float) -> None:
-        """Set a new target position and wait until settled (settling_time).
+        Set the motor_is_moving signal to the specified value.
 
         Args:
-            pos (float): New target position
-
-        Raises:
-            RuntimeError: Raised if channel is not connected.
-
-        Returns:
-            None
+            value (int): 1 if the motor is moving, 0 otherwise.
         """
-        self.controller._set_target_pos(self.channel, pos)
-        time.sleep(self.settling_time)
+        self._readback = value
+
+
+class NPointAxis(Device, PositionerBase):
+    """
+    NPointAxis class, which inherits from Device and PositionerBase. This class
+    represents an axis of an nPoint piezo stage and provides the necessary
+    functionality to move the axis and read its current position.
+    """
+
+    USER_ACCESS = ["controller"]
+    readback = Cpt(NpointReadbackSignal, signal_name="readback", kind="hinted")
+    user_setpoint = Cpt(NpointSetpointSignal, signal_name="setpoint")
+
+    motor_is_moving = Cpt(NpointMotorIsMoving, value=0, kind="normal")
+    settling_time = Cpt(Signal, value=0.1, kind="config")
+    high_limit_travel = Cpt(Signal, value=0, kind="omitted")
+    low_limit_travel = Cpt(Signal, value=0, kind="omitted")
+
+    SUB_READBACK = "readback"
+    SUB_CONNECTION_CHANGE = "connection_change"
+    _default_sub = SUB_READBACK
+
+    def __init__(
+        self,
+        axis_Id,
+        prefix="",
+        *,
+        name,
+        kind=None,
+        read_attrs=None,
+        configuration_attrs=None,
+        parent=None,
+        host="mpc2680.psi.ch",
+        port=8085,
+        limits=None,
+        sign=1,
+        socket_cls=SocketIO,
+        tolerance: float = 0.05,
+        **kwargs,
+    ):
+        self.controller = NPointController(
+            socket_cls=socket_cls, socket_host=host, socket_port=port
+        )
+        self.axis_Id = axis_Id
+        self.sign = sign
+        self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
+        self.tolerance = tolerance
+
+        super().__init__(
+            prefix,
+            name=name,
+            kind=kind,
+            read_attrs=read_attrs,
+            configuration_attrs=configuration_attrs,
+            parent=parent,
+            **kwargs,
+        )
+        self.readback.name = self.name
+        self.controller.subscribe(
+            self._update_connection_state, event_type=self.SUB_CONNECTION_CHANGE
+        )
+        self._update_connection_state()
+        if limits is not None:
+            assert len(limits) == 2
+            self.low_limit_travel.put(limits[0])
+            self.high_limit_travel.put(limits[1])
 
     @property
-    def connected(self) -> bool:
-        return self.controller.connected
+    def limits(self):
+        return (self.low_limit_travel.get(), self.high_limit_travel.get())
 
     @property
+    def low_limit(self):
+        return self.limits[0]
+
+    @property
+    def high_limit(self):
+        return self.limits[1]
+
+    def check_value(self, pos):
+        """Check that the position is within the soft limits"""
+        low_limit, high_limit = self.limits
+
+        if low_limit < high_limit and not (low_limit <= pos <= high_limit):
+            raise LimitError(f"position={pos} not within limits {self.limits}")
+
+    def _update_connection_state(self, **kwargs):
+        for walk in self.walk_signals():
+            walk.item._metadata["connected"] = self.controller.connected
+
     @raise_if_disconnected
-    def servo(self) -> int:
-        """Get servo status
+    def move(self, position, wait=True, **kwargs):
+        """Move to a specified position, optionally waiting for motion to
+        complete.
 
-        Raises:
-            RuntimeError: Raised if channel is not connected.
+        Parameters
+        ----------
+        position
+            Position to move to
+        moved_cb : callable
+            Call this callback when movement has finished. This callback must
+            accept one keyword argument: 'obj' which will be set to this
+            positioner instance.
+        timeout : float, optional
+            Maximum time to wait for the motion. If None, the default timeout
+            for this positioner is used.
 
-        Returns:
-            int: Servo status
+        Returns
+        -------
+        status : MoveStatus
+
+        Raises
+        ------
+        TimeoutError
+            When motion takes longer than `timeout`
+        ValueError
+            On invalid positions
+        RuntimeError
+            If motion fails other than timing out
         """
-        return self.controller._get_servo(self.channel)
+        self._started_moving = False
+        timeout = kwargs.pop("timeout", 10)
+        status = super().move(position, timeout=timeout, **kwargs)
+        self.user_setpoint.put(position, wait=False)
 
-    @servo.setter
-    @raise_if_disconnected
-    @typechecked
-    def servo(self, val: bool) -> None:
-        """Set servo status
+        def move_and_finish():
+            self.motor_is_moving.set_motor_is_moving(1)
+            val = self.readback.read()
+            self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
+            time.sleep(self.settling_time.get())
+            self.motor_is_moving.set_motor_is_moving(0)
+            val = self.readback.read()
+            self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
+            success = np.isclose(val[self.name]["value"], position, atol=self.tolerance)
+            self._done_moving(success=success)
+
+        threading.Thread(target=move_and_finish, daemon=True).start()
+        try:
+            if wait:
+                status_wait(status)
+        except KeyboardInterrupt:
+            self.stop()
+            raise
+
+        return status
+
+    @property
+    def axis_Id(self):
+        """
+        Return the axis_Id_alpha.
+        """
+        return self._axis_Id_alpha
+
+    @axis_Id.setter
+    def axis_Id(self, val: str):
+        """
+        Set the axis_Id_alpha and axis_Id_numeric based on the alpha value.
 
         Args:
-            val (bool): Servo status
-
-        Raises:
-            RuntimeError: Raised if channel is not connected.
-
-        Returns:
-            None
+            val (str): Single-character axis identifier.
         """
-        self.controller._set_servo(self.channel, val)
-
-    @property
-    def settling_time(self) -> float:
-        return self._settling_time
-
-    @settling_time.setter
-    @typechecked
-    def settling_time(self, val: float) -> None:
-        self._settling_time = val
-        print(f"Setting the npoint settling time to {val:.2f} s.")
-
-
-class NPointEpics(NPointAxis):
-    def __init__(self, controller: NPointController, channel: int, name: str) -> None:
-        super().__init__(controller, channel, name)
-        self.low_limit = -50
-        self.high_limit = 50
-        self._prefix = name
-
-    def get_pv(self) -> str:
-        return self.name
-
-    def get_position(self, readback=True) -> float:
-        if readback:
-            return self.get()
+        if isinstance(val, str):
+            if len(val) != 1:
+                raise ValueError("Only single-character axis_Ids are supported.")
+            self._axis_Id_alpha = val
+            self._axis_Id_numeric = ord(val.lower()) - 97
         else:
-            return self.get_target_pos()
+            raise TypeError(f"Expected value of type str but received {type(val)}")
 
-    def within_limits(self, pos: float) -> bool:
-        return pos > self.low_limit and pos < self.high_limit
+    @property
+    def axis_Id_numeric(self):
+        """
+        Return the numeric value of the axis_Id.
+        """
+        return self._axis_Id_numeric
 
-    def move(self, position: float, wait=True) -> None:
-        self.set(position)
+    @axis_Id_numeric.setter
+    def axis_Id_numeric(self, val: int):
+        """
+        Set the axis_Id_numeric and axis_Id_alpha based on the numeric value.
+
+        Args:
+            val (int): Numeric axis identifier.
+        """
+        if isinstance(val, int):
+            if val > 26:
+                raise ValueError("Numeric value exceeds supported range.")
+            self._axis_Id_alpha = val
+            self._axis_Id_numeric = (chr(val + 97)).capitalize()
+        else:
+            raise TypeError(f"Expected value of type int but received {type(val)}")
+
+    @property
+    def egu(self):
+        """The engineering units (EGU) for positions"""
+        return "um"
+
+    def stage(self) -> list[object]:
+        return super().stage()
+
+    def unstage(self) -> list[object]:
+        return super().unstage()
 
 
 if __name__ == "__main__":
-    ## EXAMPLES ##
-    #
-    # Create controller and socket instance explicitly:
-    #     controller = NPointController(SocketIO())
-    #     npointx = NPointAxis(controller, 0, "nx")
-    #     npointy = NPointAxis(controller, 1, "ny")
-
-    # Create controller instance explicitly
-    #     controller = NPointController.create()
-    #     npointx = NPointAxis(controller, 0, "nx")
-    #     npointy = NPointAxis(controller, 1, "ny")
-
-    # Single-line axis:
-    #     npointx = NPointAxis(NPointController.create(), 0, "nx")
-    #
-    # EPICS wrapper:
-    #     nx = NPointEpics(NPointController.create(), 0, "nx")
-
-    controller = NPointController.create()
-    npointx = NPointAxis(NPointController.create(), 0, "nx")
-    npointy = NPointAxis(NPointController.create(), 0, "ny")
+    npx = NPointAxis(axis_Id="A", name="npx", host="nPoint000003.psi.ch", port=23)
+    npy = NPointAxis(axis_Id="B", name="npy", host="nPoint000003.psi.ch", port=23)
+    npx.controller.on()
+    print("socket is open, axis is ready!")
+    npx.move(10)
+    print(npx.read())
+    npx.controller.off()

csaxs_bec/devices/omny/eiger1p5m.py

@@ -1,9 +1,10 @@
 import os
 import time
 
-from bec_lib import MessageEndpoints, bec_logger, messages
+from bec_lib import bec_logger, messages
+from bec_lib.endpoints import MessageEndpoints
 from ophyd import Component as Cpt
-from ophyd import Device, DeviceStatus, EpicsSignal, EpicsSignalRO, Signal
+from ophyd import Device, EpicsSignal, EpicsSignalRO, Signal
 
 logger = bec_logger.logger
 

csaxs_bec/devices/omny/galil/__init__.py

@@ -1,4 +1,4 @@
 from .fgalil_ophyd import FlomniGalilController, FlomniGalilMotor
 from .fupr_ophyd import FuprGalilController, FuprGalilMotor
-from .galil_ophyd import GalilController, GalilMotor
+from .lgalil_ophyd import LamniGalilController, LamniGalilMotor
 from .sgalil_ophyd import SGalilMotor

csaxs_bec/devices/omny/galil/fgalil_ophyd.py

@@ -10,7 +10,7 @@ from ophyd.utils import LimitError
 from ophyd_devices.utils.controller import threadlocked
 from ophyd_devices.utils.socket import SocketIO, raise_if_disconnected
 
-from csaxs_bec.devices.galil.galil_ophyd import (
+from csaxs_bec.devices.omny.galil.galil_ophyd import (
     BECConfigError,
     GalilAxesReferenced,
     GalilController,
@@ -141,7 +141,7 @@ class FlomniGalilAxesReferenced(GalilAxesReferenced):
 
 
 class FlomniGalilMotor(Device, PositionerBase):
-    USER_ACCESS = ["controller"]
+    USER_ACCESS = ["controller", "drive_axis_to_limit"]
     readback = Cpt(FlomniGalilReadbackSignal, signal_name="readback", kind="hinted")
     user_setpoint = Cpt(FlomniGalilSetpointSignal, signal_name="setpoint")
     motor_resolution = Cpt(FlomniGalilMotorResolution, signal_name="resolution", kind="config")
@@ -337,6 +337,18 @@ class FlomniGalilMotor(Device, PositionerBase):
     def unstage(self) -> list[object]:
         return super().unstage()
 
+    def drive_axis_to_limit(self, direction: str) -> None:
+        """
+        Drive an axis to the limit in a specified direction.
+
+        Args:
+            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.        
+        """
+        self.controller.drive_axis_to_limit(self.axis_Id_numeric, direction)
+        #now force position read to cache
+        val = self.readback.read()
+        self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
+
     def stop(self, *, success=False):
         self.controller.stop_all_axes()
         return super().stop(success=success)

csaxs_bec/devices/omny/galil/fupr_ophyd.py

@@ -1,4 +1,3 @@
-import functools
 import threading
 import time
 
@@ -7,21 +6,19 @@ from bec_lib import bec_logger
 from ophyd import Component as Cpt
 from ophyd import Device, PositionerBase, Signal
 from ophyd.status import wait as status_wait
-from ophyd.utils import LimitError, ReadOnlyError
-from ophyd_devices.utils.controller import Controller, threadlocked
-from ophyd_devices.utils.socket import SocketIO, SocketSignal, raise_if_disconnected
-from prettytable import PrettyTable
+from ophyd.utils import LimitError
+from ophyd_devices.utils.controller import threadlocked
+from ophyd_devices.utils.socket import SocketIO, raise_if_disconnected
 
-from csaxs_bec.devices.galil.galil_ophyd import (
+from csaxs_bec.devices.omny.galil.galil_ophyd import (
     BECConfigError,
     GalilAxesReferenced,
-    GalilCommunicationError,
     GalilController,
     GalilError,
     GalilMotorIsMoving,
     GalilMotorResolution,
-    GalilReadbackSignal,
     GalilSetpointSignal,
+    GalilSignalRO,
     retry_once,
 )
 
@@ -47,7 +44,7 @@ class FuprGalilController(GalilController):
         raise NotImplementedError("This function is not implemented for the FuprGalilController.")
 
 
-class FuprGalilReadbackSignal(GalilReadbackSignal):
+class FuprGalilReadbackSignal(GalilSignalRO):
     @retry_once
     @threadlocked
     def _socket_get(self) -> float:

csaxs_bec/devices/omny/galil/galil_ophyd.py

@@ -0,0 +1,472 @@
+"""
+This module contains the base class for Galil controllers as well as the signals used for Galil devices.
+"""
+
+import functools
+import time
+
+from bec_lib import bec_logger
+from ophyd.utils import ReadOnlyError
+from ophyd_devices.utils.controller import Controller, threadlocked
+from ophyd_devices.utils.socket import SocketSignal
+from prettytable import PrettyTable
+
+logger = bec_logger.logger
+
+
+class GalilCommunicationError(Exception):
+    pass
+
+
+class GalilError(Exception):
+    pass
+
+
+class BECConfigError(Exception):
+    pass
+
+
+def retry_once(fcn):
+    """Decorator to rerun a function in case a Galil communication error was raised. This may happen if the buffer was not empty."""
+
+    @functools.wraps(fcn)
+    def wrapper(self, *args, **kwargs):
+        try:
+            val = fcn(self, *args, **kwargs)
+        except (GalilCommunicationError, GalilError):
+            val = fcn(self, *args, **kwargs)
+        return val
+
+    return wrapper
+
+
+class GalilController(Controller):
+    """
+    Base class for Galil controllers. This class provides the basic functionality for Galil controllers and should be subclassed for specific devices.
+    """
+
+    _axes_per_controller = 8
+    USER_ACCESS = [
+        "describe",
+        "show_running_threads",
+        "galil_show_all",
+        "socket_put_and_receive",
+        "socket_put_confirmed",
+        "drive_axis_to_limit",
+        "find_reference",
+        "get_motor_limit_switch",
+        "is_motor_on",
+        "all_axes_referenced",
+    ]
+
+    OKBLUE = '\033[94m'
+    OKCYAN = '\033[96m'
+    OKGREEN = '\033[92m'
+    WARNING = '\033[93m'
+    FAIL = '\033[91m'
+    ENDC = '\033[0m'
+
+    @threadlocked
+    def socket_put(self, val: str) -> None:
+        self.sock.put(f"{val}\r".encode())
+
+    @retry_once
+    def socket_put_confirmed(self, val: str) -> None:
+        """Send message to controller and ensure that it is received by checking that the socket receives a colon.
+
+        Args:
+            val (str): Message that should be sent to the socket
+
+        Raises:
+            GalilCommunicationError: Raised if the return value is not a colon.
+
+        """
+        return_val = self.socket_put_and_receive(val)
+        if return_val != ":":
+            raise GalilCommunicationError(
+                f"Expected return value of ':' but instead received {return_val}"
+            )
+
+    def is_axis_moving(self, axis_Id, axis_Id_numeric) -> bool:
+        if axis_Id is None and axis_Id_numeric is not None:
+            axis_Id = self.axis_Id_numeric_to_alpha(axis_Id_numeric)
+        is_moving = bool(float(self.socket_put_and_receive(f"MG_BG{axis_Id}")) != 0)
+        backlash_is_active = bool(
+            float(self.socket_put_and_receive(f"MGbcklact[{axis_Id_numeric}]")) != 0
+        )
+        return bool(
+            is_moving or backlash_is_active or self.is_thread_active(0) or self.is_thread_active(2)
+        )
+
+    def is_thread_active(self, thread_id: int) -> bool:
+        val = float(self.socket_put_and_receive(f"MG_XQ{thread_id}"))
+        if val == -1:
+            return False
+        return True
+
+    def stop_all_axes(self) -> str:
+        if not self.is_thread_active(1):
+            return self.socket_put_and_receive("XQ#STOP,1")
+        else:
+            return ":"
+
+    def get_digital_input(self, channel):
+        return bool(float(self.socket_put_and_receive(f"MG @IN[{channel}]").strip()))
+
+    def axis_is_referenced(self, axis_Id_numeric) -> bool:
+        return bool(float(self.socket_put_and_receive(f"MG axisref[{axis_Id_numeric}]").strip()))
+    
+    def folerr_status(self, axis_Id_numeric) -> bool:
+        return bool(float(self.socket_put_and_receive(f"MG folaxerr[{axis_Id_numeric}]").strip()))
+
+    def motor_temperature(self, axis_Id_numeric) -> float:
+        #this is only valid for omny. consider moving to ogalil
+        voltage = float(self.socket_put_and_receive(f"MG @AN[{axis_Id_numeric+1}]").strip())
+        voltage2 = float(self.socket_put_and_receive(f"MG @AN[{axis_Id_numeric+1}]").strip())
+        if voltage2 < voltage:
+            voltage = voltage2
+        # convert from [-10,10]V to [0,300]degC
+        temperature_degC = round((voltage+10.0) / 20.0 * 300.0, 1)
+
+        #the motors of the parking station have a different offset
+        #the range is reduced, so if at the limit, we show an extreme value
+        if self.sock.port == 8082:
+            #controller 2
+            if axis_Id_numeric == 6:
+                temperature_degC = round((voltage+10.0-11.4) / 20.0 * 300.0, 1)
+                if voltage > 9.9:
+                    temperature_degC = 300
+            if axis_Id_numeric == 7:
+                temperature_degC = round((voltage+.0-12) / 20.0 * 300.0, 1)
+                if voltage > 9.9:
+                    temperature_degC = 300
+        return temperature_degC
+
+    def all_axes_referenced(self) -> bool:
+        """
+        Check if all axes are referenced.
+        """
+        return bool(float(self.socket_put_and_receive("MG allaxref").strip()))
+    
+    def _omny_get_microstep_position(self,axis_Id):
+        return float(self.socket_put_and_receive(f"MG _TD{axis_Id}").strip())
+    
+    
+    def _omny_get_reference_limit(self,axis_Id):
+        get_axis_no = float(self.socket_put_and_receive(f"MG frmmv").strip())
+        if(get_axis_no>0):
+            reference_is_before = float(self.socket_put_and_receive(f"MG _FL{axis_Id}").strip())
+        elif(get_axis_no<0):
+            reference_is_before = float(self.socket_put_and_receive(f"MG _BL{axis_Id}").strip())
+        else:
+            reference_is_before = 0
+        return reference_is_before
+
+    def drive_axis_to_limit(self, axis_Id_numeric: int, direction: str, verbose=0) -> None:
+        """
+        Drive an axis to the limit in a specified direction.
+
+        Args:
+            axis_Id_numeric (int): Axis number
+            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.
+        """
+        if direction == "forward":
+            direction_flag = 1
+        elif direction == "reverse":
+            direction_flag = -1
+        else:
+            raise ValueError(f"Invalid direction {direction}")
+
+        self.socket_put_confirmed(f"naxis={axis_Id_numeric}")
+        self.socket_put_confirmed(f"ndir={direction_flag}")
+        self.socket_put_confirmed("XQ#NEWPAR")
+        time.sleep(0.1)
+        self.socket_put_confirmed("XQ#FES")
+        time.sleep(0.1)
+        axis_Id = self.axis_Id_numeric_to_alpha(axis_Id_numeric)
+        while self.is_axis_moving(None, axis_Id_numeric):
+            time.sleep(0.01)
+            if verbose:
+                self.get_device_manager().connector.send_client_info(f"Current microstep position {self._omny_get_microstep_position(axis_Id):.0f}", scope="drive axis to limit", show_asap=True)
+                time.sleep(0.5)
+
+        # check if we actually hit the limit
+        if direction == "forward":
+            limit = self.get_motor_limit_switch(axis_Id)[1]
+        elif direction == "reverse":
+            limit = self.get_motor_limit_switch(axis_Id)[0]
+
+        if not limit:
+            raise GalilError(f"Failed to drive axis {axis_Id}/{axis_Id_numeric} to limit.")
+        else:
+            print("Limit reached.")
+
+    def get_device_manager(self):
+        for axis in self._axis:
+            if hasattr(axis, "device_manager") and axis.device_manager:
+                return axis.device_manager
+        raise BECConfigError("Could not access the device_manager")
+
+    def find_reference(self, axis_Id_numeric: int, verbose=0, raise_error = 1) -> None:
+        """
+        Find the reference of an axis.
+
+        Args:
+            axis_Id_numeric (int): Axis number
+        """
+        time.sleep(0.1)
+        self.socket_put_confirmed(f"naxis={axis_Id_numeric}")
+        self.socket_put_and_receive("XQ#NEWPAR")
+        time.sleep(0.1)
+        self.socket_put_confirmed("XQ#FRM")
+        time.sleep(0.1)
+        axis_Id = self.axis_Id_numeric_to_alpha(axis_Id_numeric)
+        while self.is_axis_moving(None, axis_Id_numeric):
+            time.sleep(0.1)
+            if verbose:
+                self.get_device_manager().connector.send_client_info(f"Current microstep position {self._omny_get_microstep_position(axis_Id):.0f} reference is before {self._omny_get_reference_limit(axis_Id)}", scope="find axis reference", show_asap=True)
+                time.sleep(0.5)
+
+        if not self.axis_is_referenced(axis_Id_numeric):
+            if raise_error:
+                raise GalilError(f"Failed to find reference of axis {axis_Id_numeric}.")
+            else:
+                print(f"Failed to find reference of axis {axis_Id_numeric}.")
+        else:
+            logger.info(f"Successfully found reference of axis {axis_Id_numeric}.")
+            print(f"Successfully found reference of axis {axis_Id_numeric}.")
+
+        
+    def show_running_threads(self) -> None:
+        t = PrettyTable()
+        t.title = f"Threads on {self.sock.host}:{self.sock.port}"
+        t.field_names = [str(ax) for ax in range(self._axes_per_controller)]
+        t.add_row(
+            [
+                "active" if self.is_thread_active(t) else "inactive"
+                for t in range(self._axes_per_controller)
+            ]
+        )
+        print(t)
+
+    def is_motor_on(self, axis_Id) -> bool:
+        return not bool(float(self.socket_put_and_receive(f"MG _MO{axis_Id}").strip()))
+    
+    def get_motor_limit_switch(self, axis_Id) -> list:
+        """
+        Get the status of the motor limit switches.
+
+        Args:
+            axis_Id (str): Axis identifier (e.g. 'A', 'B', 'C', ...)
+
+        Returns:
+            list: List of two booleans indicating if the low and high limit switch is active, respectively.
+        """
+        ret = self.socket_put_and_receive(f"MG _LR{axis_Id}, _LF{axis_Id}")
+        low, high = ret.strip().split(" ")
+        return [not bool(float(low)), not bool(float(high))]
+
+    def describe(self) -> None:
+        t = PrettyTable()
+        t.title = f"{self.__class__.__name__} on {self.sock.host}:{self.sock.port}"
+        field_names = [
+            "Axis",
+            "Name",
+            "Referenced",
+            "Motor On",
+            "Limits",
+            "Position",
+        ]
+        # in case of OMNY
+        if self.sock.host == "mpc3217.psi.ch":
+            field_names.append("Temperature")
+            field_names.append("FolErr")
+        t.field_names = field_names
+        for ax in range(self._axes_per_controller):
+            axis = self._axis[ax]
+            if axis is not None:
+                if self.sock.host == "mpc3217.psi.ch":
+                    #case of omny. possibly consider moving to ogalil
+                    motor_on = self.is_motor_on(axis.axis_Id)
+                    if motor_on == True:
+                        motor_on = self.WARNING + "ON" + self.ENDC
+                    else:
+                        motor_on = "OFF"
+
+                    folerr_status = self.folerr_status(axis.axis_Id_numeric)
+                    if folerr_status == True:
+                        folerr_status = self.WARNING + "True" + self.ENDC
+                    else:
+                        folerr_status = "False"
+                    position = axis.readback.read().get(axis.name).get("value")
+                    position = f'{position:.3f}'
+                    t.add_row(
+                        [
+                            f"{axis.axis_Id_numeric}/{axis.axis_Id}",
+                            axis.name,
+                            self.axis_is_referenced(axis.axis_Id_numeric),
+                            motor_on,
+                            self.get_motor_limit_switch(axis.axis_Id),
+                            position,
+                            self.motor_temperature(axis.axis_Id_numeric),
+                            self.folerr_status(axis.axis_Id_numeric),
+                        ]
+                    )
+                else:
+                    t.add_row(
+                        [
+                            f"{axis.axis_Id_numeric}/{axis.axis_Id}",
+                            axis.name,
+                            self.axis_is_referenced(axis.axis_Id_numeric),
+                            self.is_motor_on(axis.axis_Id),
+                            self.get_motor_limit_switch(axis.axis_Id),
+                            axis.readback.read().get(axis.name).get("value"),
+                        ]
+                    )
+            else:
+                t.add_row([None for t in t.field_names])
+        print(t)
+
+        self.show_running_threads()
+        self.show_status_other()
+
+
+
+    def show_status_other(self) -> None:
+        """
+        Show additional device-specific status information.
+        Override in subclasses.
+        """
+
+    def galil_show_all(self) -> None:
+        for controller in self._controller_instances.values():
+            if isinstance(controller, GalilController):
+                controller.describe()
+
+    @staticmethod
+    def axis_Id_to_numeric(axis_Id: str) -> int:
+        return ord(axis_Id.lower()) - 97
+
+    @staticmethod
+    def axis_Id_numeric_to_alpha(axis_Id_numeric: int) -> str:
+        return (chr(axis_Id_numeric + 97)).capitalize()
+
+
+class GalilSignalBase(SocketSignal):
+    def __init__(self, signal_name, **kwargs):
+        self.signal_name = signal_name
+        super().__init__(**kwargs)
+        self.controller = self.parent.controller
+
+
+class GalilSignalRO(GalilSignalBase):
+    def __init__(self, signal_name, **kwargs):
+        super().__init__(signal_name, **kwargs)
+        self._metadata["write_access"] = False
+
+    def _socket_set(self, val):
+        raise ReadOnlyError("Read-only signals cannot be set")
+
+
+class GalilReadbackSignal(GalilSignalRO):
+    @retry_once
+    @threadlocked
+    def _socket_get(self) -> float:
+        """Get command for the readback signal
+
+        Returns:
+            float: Readback value after adjusting for sign and motor resolution.
+        """
+        current_pos = float(self.controller.socket_put_and_receive(f"TD{self.parent.axis_Id}"))
+        current_pos *= self.parent.sign
+        step_mm = self.parent.motor_resolution.get()
+        return current_pos / step_mm
+
+    def read(self):
+        self._metadata["timestamp"] = time.time()
+        val = super().read()
+        return val
+
+
+class GalilSetpointSignal(GalilSignalBase):
+    setpoint = 0
+
+    def _socket_get(self) -> float:
+        """Get command for receiving the setpoint / target value.
+        The value is not pulled from the controller but instead just the last setpoint used.
+
+        Returns:
+            float: setpoint / target value
+        """
+        return self.setpoint * self.parent.sign
+
+    @retry_once
+    @threadlocked
+    def _socket_set(self, val: float) -> None:
+        """Set a new target value / setpoint value. Before submission, the target value is adjusted for the axis' sign.
+        Furthermore, it is ensured that all axes are referenced before a new setpoint is submitted.
+
+        Args:
+            val (float): Target value / setpoint value
+
+        Raises:
+            GalilError: Raised if not all axes are referenced.
+
+        """
+        target_val = val * self.parent.sign
+        self.setpoint = target_val
+        axes_referenced = self.controller.all_axes_referenced()
+        if axes_referenced:
+            while self.controller.is_thread_active(0):
+                time.sleep(0.1)
+
+            #in the case of lamni, consider moving to lgalil
+            if self.parent.axis_Id_numeric == 2 and self.controller.sock.host == "mpc2680.psi.ch":
+                try:
+                    rt = self.parent.device_manager.devices[self.parent.rt]
+                    if rt.enabled:
+                        angle_status = self.parent.device_manager.devices[
+                            self.parent.rt
+                        ].obj.controller.feedback_status_angle_lamni()
+                        if angle_status:
+                            self.controller.socket_put_confirmed("angintf=1")
+                except KeyError:
+                    logger.warning(
+                        "RT is disabled. Failed to update RT angle interferometer status to galil."
+                    )
+
+            self.controller.socket_put_confirmed(f"naxis={self.parent.axis_Id_numeric}")
+            self.controller.socket_put_confirmed(f"ntarget={target_val:.3f}")
+            self.controller.socket_put_confirmed("movereq=1")
+            self.controller.socket_put_confirmed("XQ#NEWPAR")
+            while self.controller.is_thread_active(0):
+                time.sleep(0.005)
+        else:
+            raise GalilError("Not all axes are referenced.")
+
+
+class GalilMotorResolution(GalilSignalRO):
+    @retry_once
+    @threadlocked
+    def _socket_get(self):
+        return float(
+            self.controller.socket_put_and_receive(f"MG stppermm[{self.parent.axis_Id_numeric}]")
+        )
+
+
+class GalilMotorIsMoving(GalilSignalRO):
+    @threadlocked
+    def _socket_get(self):
+        return self.controller.is_axis_moving(self.parent.axis_Id, self.parent.axis_Id_numeric)
+
+    def get(self):
+        val = super().get()
+        if val is not None:
+            self._run_subs(sub_type=self.SUB_VALUE, value=val, timestamp=time.time())
+        return val
+
+
+class GalilAxesReferenced(GalilSignalRO):
+    @threadlocked
+    def _socket_get(self):
+        return self.controller.all_axes_referenced()

csaxs_bec/devices/omny/galil/lgalil_ophyd.py

@@ -0,0 +1,313 @@
+import threading
+import time
+
+import numpy as np
+from bec_lib.logger import bec_logger
+from ophyd import Component as Cpt
+from ophyd import Device, PositionerBase, Signal
+from ophyd.status import wait as status_wait
+from ophyd.utils import LimitError
+from ophyd_devices.utils.controller import threadlocked
+from ophyd_devices.utils.socket import SocketIO, raise_if_disconnected
+
+from csaxs_bec.devices.omny.galil.galil_ophyd import (
+    BECConfigError,
+    GalilAxesReferenced,
+    GalilController,
+    GalilMotorIsMoving,
+    GalilMotorResolution,
+    GalilSetpointSignal,
+    GalilSignalRO,
+    retry_once,
+)
+
+logger = bec_logger.logger
+
+
+class LamniGalilController(GalilController):
+    USER_ACCESS = [
+        "describe",
+        "show_running_threads",
+        "galil_show_all",
+        "socket_put_and_receive",
+        "socket_put_confirmed",
+        "lgalil_is_air_off_and_orchestra_enabled",
+        "drive_axis_to_limit",
+        "find_reference",
+        "get_motor_limit_switch",
+        "is_motor_on",
+        "all_axes_referenced",
+    ]
+
+    def show_status_other(self):
+        if self.get_digital_input(5):
+            print("Emergency stop is not pushed.")
+        else:
+            print("Emergency stop is pushed.")
+        if self.get_digital_input(6):
+            print("Driver axis 2 error.")
+        if self.get_digital_input(13):
+            print("No air pressure at inner rotation.")
+        else:
+            print("There is air pressure at the inner rotation.")
+        if self.get_digital_input(14):
+            print("No air pressure at outer rotation axial.")
+        else:
+            print("There is air pressure at the outer rotation axial.")
+        if self.get_digital_input(15):
+            print("No air pressure at outer rotation radial.")
+        else:
+            print("There is air pressure at the outer rotation radial.")
+        swver = float(self.socket_put_and_receive("MGswver"))
+        print(f"Lgalil LAMNI firmware version {swver:2.0f}.")
+
+    def lamni_lights_off(self):
+        self.socket_put_confirmed("SB1")
+
+    def lamni_lights_on(self):
+        self.socket_put_confirmed("CB1")
+
+    def lgalil_is_air_off_and_orchestra_enabled(self) -> bool:
+        # TODO: move this to the LamNI-specific controller
+        rt_not_blocked_by_galil = bool(self.socket_put_and_receive("MG@OUT[9]"))
+        air_off = bool(self.socket_put_and_receive("MG@OUT[13]"))
+        return rt_not_blocked_by_galil and air_off
+
+class LamniGalilReadbackSignal(GalilSignalRO):
+    @retry_once
+    @threadlocked
+    def _socket_get(self) -> float:
+        """Get command for the readback signal
+
+        Returns:
+            float: Readback value after adjusting for sign and motor resolution.
+        """
+        current_pos = float(self.controller.socket_put_and_receive(f"TD{self.parent.axis_Id}"))
+        current_pos *= self.parent.sign
+        step_mm = self.parent.motor_resolution.get()
+        return current_pos / step_mm
+
+    def read(self):
+        self._metadata["timestamp"] = time.time()
+        val = super().read()
+        if self.parent.axis_Id_numeric == 2:
+            try:
+                rt = self.parent.device_manager.devices[self.parent.rtx]
+                if rt.enabled:
+                    rt.obj.controller.set_rotation_angle(val[self.parent.name]["value"])
+            except KeyError:
+                logger.warning("Failed to set RT value during readback.")
+        return val
+
+class LamniGalilMotor(Device, PositionerBase):
+    USER_ACCESS = ["controller", "drive_axis_to_limit", "find_reference"]
+    readback = Cpt(LamniGalilReadbackSignal, signal_name="readback", kind="hinted")
+    user_setpoint = Cpt(GalilSetpointSignal, signal_name="setpoint")
+    motor_resolution = Cpt(GalilMotorResolution, signal_name="resolution", kind="config")
+    motor_is_moving = Cpt(GalilMotorIsMoving, signal_name="motor_is_moving", kind="normal")
+    all_axes_referenced = Cpt(GalilAxesReferenced, signal_name="all_axes_referenced", kind="config")
+    high_limit_travel = Cpt(Signal, value=0, kind="omitted")
+    low_limit_travel = Cpt(Signal, value=0, kind="omitted")
+
+    SUB_READBACK = "readback"
+    SUB_CONNECTION_CHANGE = "connection_change"
+    _default_sub = SUB_READBACK
+
+    def __init__(
+        self,
+        axis_Id,
+        prefix="",
+        *,
+        name,
+        kind=None,
+        read_attrs=None,
+        configuration_attrs=None,
+        parent=None,
+        host="mpc2680.psi.ch",
+        port=8081,
+        limits=None,
+        sign=1,
+        socket_cls=SocketIO,
+        device_manager=None,
+        **kwargs,
+    ):
+        self.controller = LamniGalilController(
+            socket_cls=socket_cls, socket_host=host, socket_port=port
+        )
+        self.axis_Id = axis_Id
+        self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
+        self.sign = sign
+        self.tolerance = kwargs.pop("tolerance", 0.5)
+        self.device_mapping = kwargs.pop("device_mapping", {})
+        self.device_manager = device_manager
+
+        if len(self.device_mapping) > 0 and self.device_manager is None:
+            raise BECConfigError(
+                "device_mapping has been specified but the device_manager cannot be accessed."
+            )
+        self.rt = self.device_mapping.get("rt")
+
+        super().__init__(
+            prefix,
+            name=name,
+            kind=kind,
+            read_attrs=read_attrs,
+            configuration_attrs=configuration_attrs,
+            parent=parent,
+            **kwargs,
+        )
+        self.readback.name = self.name
+        self.controller.subscribe(
+            self._update_connection_state, event_type=self.SUB_CONNECTION_CHANGE
+        )
+        self._update_connection_state()
+        # self.readback.subscribe(self._forward_readback, event_type=self.readback.SUB_VALUE)
+
+        if limits is not None:
+            assert len(limits) == 2
+            self.low_limit_travel.put(limits[0])
+            self.high_limit_travel.put(limits[1])
+
+    @property
+    def limits(self):
+        return (self.low_limit_travel.get(), self.high_limit_travel.get())
+
+    @property
+    def low_limit(self):
+        return self.limits[0]
+
+    @property
+    def high_limit(self):
+        return self.limits[1]
+
+    def check_value(self, pos):
+        """Check that the position is within the soft limits"""
+        low_limit, high_limit = self.limits
+
+        if low_limit < high_limit and not (low_limit <= pos <= high_limit):
+            raise LimitError(f"position={pos} not within limits {self.limits}")
+
+    def _update_connection_state(self, **kwargs):
+        for walk in self.walk_signals():
+            walk.item._metadata["connected"] = self.controller.connected
+
+    def _forward_readback(self, **kwargs):
+        kwargs.pop("sub_type")
+        self._run_subs(sub_type="readback", **kwargs)
+
+    @raise_if_disconnected
+    def move(self, position, wait=True, **kwargs):
+        """Move to a specified position, optionally waiting for motion to
+        complete.
+
+        Parameters
+        ----------
+        position
+            Position to move to
+        moved_cb : callable
+            Call this callback when movement has finished. This callback must
+            accept one keyword argument: 'obj' which will be set to this
+            positioner instance.
+        timeout : float, optional
+            Maximum time to wait for the motion. If None, the default timeout
+            for this positioner is used.
+
+        Returns
+        -------
+        status : MoveStatus
+
+        Raises
+        ------
+        TimeoutError
+            When motion takes longer than `timeout`
+        ValueError
+            On invalid positions
+        RuntimeError
+            If motion fails other than timing out
+        """
+        self._started_moving = False
+        timeout = kwargs.pop("timeout", 100)
+        status = super().move(position, timeout=timeout, **kwargs)
+        self.user_setpoint.put(position, wait=False)
+
+        def move_and_finish():
+            while self.motor_is_moving.get():
+                logger.info("motor is moving")
+                val = self.readback.read()
+                self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
+                time.sleep(0.1)
+            val = self.readback.read()
+            success = np.isclose(val[self.name]["value"], position, atol=self.tolerance)
+
+            if not success:
+                print(" stop")
+            self._done_moving(success=success)
+            logger.info("Move finished")
+
+        threading.Thread(target=move_and_finish, daemon=True).start()
+        try:
+            if wait:
+                status_wait(status)
+        except KeyboardInterrupt:
+            self.stop()
+            raise
+
+        return status
+
+    @property
+    def axis_Id(self):
+        return self._axis_Id_alpha
+
+    @axis_Id.setter
+    def axis_Id(self, val):
+        if isinstance(val, str):
+            if len(val) != 1:
+                raise ValueError("Only single-character axis_Ids are supported.")
+            self._axis_Id_alpha = val
+            self._axis_Id_numeric = self.controller.axis_Id_to_numeric(val)
+        else:
+            raise TypeError(f"Expected value of type str but received {type(val)}")
+
+    @property
+    def axis_Id_numeric(self):
+        return self._axis_Id_numeric
+
+    @axis_Id_numeric.setter
+    def axis_Id_numeric(self, val):
+        if isinstance(val, int):
+            if val > 26:
+                raise ValueError("Numeric value exceeds supported range.")
+            self._axis_Id_alpha = self.controller.axis_Id_numeric_to_alpha(val)
+            self._axis_Id_numeric = val
+        else:
+            raise TypeError(f"Expected value of type int but received {type(val)}")
+
+    @property
+    def egu(self):
+        """The engineering units (EGU) for positions"""
+        return "mm"
+
+    def find_reference(self):
+        """
+        Find the reference of the axis.
+        """
+        self.controller.find_reference(self.axis_Id_numeric)
+        #now force position read to cache
+        val = self.readback.read()
+        self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
+
+    def drive_axis_to_limit(self, direction: str) -> None:
+        """
+        Drive an axis to the limit in a specified direction.
+
+        Args:
+            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.        
+        """
+        self.controller.drive_axis_to_limit(self.axis_Id_numeric, direction)
+        #now force position read to cache
+        val = self.readback.read()
+        self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
+
+    def stop(self, *, success=False):
+        self.controller.stop_all_axes()
+        return super().stop(success=success)

csaxs_bec/devices/omny/galil/ogalil_ophyd.py

@@ -0,0 +1,515 @@
+import functools
+import threading
+import time
+import urllib.request
+import xml.etree.ElementTree as ET
+
+import numpy as np
+from bec_lib.logger import bec_logger
+from ophyd import Component as Cpt
+from ophyd import Device, PositionerBase, Signal
+from ophyd.status import wait as status_wait
+from ophyd.utils import LimitError
+from ophyd_devices.utils.controller import threadlocked
+from ophyd_devices.utils.socket import SocketIO, raise_if_disconnected
+
+from csaxs_bec.devices.omny.galil.galil_ophyd import (
+    BECConfigError,
+    GalilAxesReferenced,
+    GalilCommunicationError,
+    GalilController,
+    GalilError,
+    GalilMotorIsMoving,
+    GalilSetpointSignal,
+    GalilSignalRO,
+)
+
+logger = bec_logger.logger
+
+
+def retry_once(fcn):
+    """Decorator to rerun a function in case a Galil communication error was raised. This may happen if the buffer was not empty."""
+
+    @functools.wraps(fcn)
+    def wrapper(self, *args, **kwargs):
+        try:
+            val = fcn(self, *args, **kwargs)
+        except (GalilCommunicationError, GalilError):
+            val = fcn(self, *args, **kwargs)
+        return val
+
+    return wrapper
+
+
+class GalilMotorResolution(GalilSignalRO):
+    @retry_once
+    @threadlocked
+    def _socket_get(self):
+        if self.controller.sock.port == 8083 and self.parent.axis_Id_numeric == 2:
+        # rotation stage
+            return 89565.8666667
+        else:
+            return 51200
+
+
+class OMNYGalilReadbackSignal(GalilSignalRO):
+
+    previous_rotation_angle = 0
+    ignore_glitch = True
+
+    @retry_once
+    @threadlocked
+    def _socket_get(self) -> float:
+        """Get command for the readback signal
+
+        Returns:
+            float: Readback value after adjusting for sign and motor resolution.
+        """
+
+        current_pos = float(self.controller.socket_put_and_receive(f"TP{self.parent.axis_Id}"))
+        current_pos *= self.parent.sign
+        step_mm = self.parent.motor_resolution.get()
+        #here we introduce an offset of 25 to the rotation axis
+        #when setting a position this is taken into account in the controller
+        #that way we just do tomography from 0 to 180 degrees
+        if self.parent.axis_Id_numeric == 2 and self.controller.sock.port == 8083:
+            return (current_pos / step_mm)+25
+        else:
+            return current_pos / step_mm
+
+    def read(self):
+        self._metadata["timestamp"] = time.time()
+        val = super().read()
+       
+        #if reading rotation stage angle
+        if self.parent.axis_Id_numeric == 2 and self.controller.sock.port == 8083:
+            current_readback_value = val[self.parent.name]["value"]
+            #print (f"previous rotation angle {self.previous_rotation_angle}, current readback {current_readback_value}.")
+
+            if np.fabs((self.previous_rotation_angle-current_readback_value)>10):
+                message = f"Glitch detected in rotation stage. Previous rotation angle {self.previous_rotation_angle}, current readback {current_readback_value}."
+                print(message)
+                self.parent.device_manager.connector.send_client_info(message, scope="glitch detector", show_asap=True)
+            
+            val = super().read()
+            current_readback_value = val[self.parent.name]["value"]
+
+            if np.fabs((self.previous_rotation_angle-current_readback_value)>10):
+                message = f"Glitch detected in rotation stage second read. Previous rotation angle {self.previous_rotation_angle}, current readback {current_readback_value}. Disabling the controller."
+                print(message)
+                self.parent.device_manager.connector.send_client_info(message, scope="glitch detector", show_asap=True)
+            
+                self.parent.device_manager.devices["osamroy"].obj.controller.socket_put_confirmed("allaxref=0")
+                self.parent.device_manager.devices["osamroy"].obj.enabled = False
+
+                return val
+
+            self.previous_rotation_angle = current_readback_value
+            try:
+                rt = self.parent.device_manager.devices["rtx"]
+                if rt.enabled:
+                    rt.obj.controller.set_rotation_angle(val[self.parent.name]["value"]-25+54)
+            except KeyError:
+                logger.warning("Failed to set RT value during ogalil readback.")        
+        return val
+
+
+
+class OMNYGalilController(GalilController):
+    USER_ACCESS = [
+        "describe",
+        "show_running_threads",
+        "galil_show_all",
+        "socket_put_and_receive",
+        "socket_put_confirmed",
+        "get_motor_limit_switch",
+        "is_motor_on",
+        "all_axes_referenced",
+        "_ogalil_switchsocket",
+        "_ogalil_switchsocket_switch_all_on",
+        "_ogalil_switchsocket_status",
+        "_ogalil_switchsocket_are_all_on",
+        "_ogalil_folerr_not_ignore",
+    ]
+
+    OKBLUE = '\033[94m'
+    OKCYAN = '\033[96m'
+    OKGREEN = '\033[92m'
+    WARNING = '\033[93m'
+    FAIL = '\033[91m'
+    ENDC = '\033[0m'
+    
+    def on(self) -> None:
+        """Open a new socket connection to the controller"""
+        self._ogalil_switchsocket_switch_all_on()
+        time.sleep(0.3)
+        super().on()
+
+    def _ogalil_switchsocket(self, number: int, switch: bool):
+        # number is socket number ranging from 1 to 4
+        # switch is either 0 or 1
+        if number not in range(1, 5):
+            raise Exception("Socket number ranges from 1 to 4")
+        else:
+            contents = urllib.request.urlopen(
+                f"http://mpc3217:8091/netio.cgi?pass=24A42C3929C5&output{number}={switch}"
+            ).read()
+            # print(contents)
+            if b"OK" in contents:
+                print(f"Controller number switchsocket {number} is now {switch}")
+                return 1
+            else:
+                print(f"Failed to switch controller number {number}")
+                return 0
+
+    def _ogalil_switchsocket_are_all_on(self):
+        if self._ogalil_switchsocket_status() == [1, 1, 1, 1]:
+            return 1
+        else:
+            return 0
+
+    def _ogalil_tempdisabledebug(self):
+        # sock_put(_ogalil_debugging_host_and_port_str[ogalil_no][],"WH\r\n") < 1) {
+        # ret_str = sock_get(_ogalil_debugging_host_and_port_str[ogalil_no][],_ogalil_prompt_str)
+        #        printf("%s   _ogalil_redirect_debug_output(%d): expected \"IHx\" received \"%s\"\n",\
+        # cmd_str = sprintf("CF %s\r\n",substr(ret_str,3,1))
+        # if (sock_put(_ogalil_debugging_host_and_port_str[ogalil_no][],cmd_str) < 1) {
+        # cmd_str = sprintf("CW 2\r\n")
+        # if (sock_put(_ogalil_debugging_host_and_port_str[ogalil_no][],cmd_str) < 1) {
+        print("not yet implemented")
+        return 0
+
+    def _ogalil_folerr_reset_and_ignore(self, axis_id_numeric: int) -> None:
+        self.socket_put_confirmed(f"folaxerr[{axis_id_numeric}]=0")
+        self.socket_put_confirmed("folerr=0")
+        self.socket_put_confirmed("IgNoFol=1")
+        self.socket_put_confirmed("XQ#STOP,1")
+
+
+    def _ogalil_set_axis_to_pos_wo_reference_search(self, axis_id_numeric, axis_id, pos_mm, motor_resolution, motor_sign):
+
+        self.socket_put_confirmed("IgNoFol=1")
+
+        # pos_mm = pos_encoder / motor_resolution
+        pos_encoder = pos_mm * motor_resolution * motor_sign
+        #print(motor_resolution)
+    
+        self.socket_put_confirmed(f"DE{axis_id}={pos_encoder:.0f}")
+        self.socket_put_confirmed(f"DP{axis_id}=_TP{axis_id}*ratio[{axis_id_numeric:.0f}]")
+
+        self.socket_put_confirmed(f"folaxerr[{axis_id_numeric}]=0")
+        self.socket_put_confirmed(f"axisref[{axis_id_numeric}]=1")
+        self.socket_put_confirmed("folerr=0")
+
+        self._ogalil_folerr_not_ignore()
+
+
+    def _ogalil_folerr_not_ignore(self):
+        self.socket_put_confirmed("IgNoFol=0")
+
+    def _ogalil_switchsocket_switch_all_on(self):
+        if not self._ogalil_switchsocket_are_all_on():
+            for j in range(1, 5):
+                self._ogalil_switchsocket(j, 1)
+                time.sleep(0.4)
+
+    def _ogalil_switchsocket_status(self):
+        contents = urllib.request.urlopen("http://mpc3217:8091/netio.xml").read()
+        root = ET.fromstring(contents)
+        returnvalue = []
+        for j in range(0, 4):
+            status = int(root[1][j][2].text)
+            returnvalue.append(int(root[1][j][2].text))
+            if status:
+                print(f"Controller {j+1} is ON")
+            else:
+                print(f"Controller {j+1} is OFF")
+        return returnvalue
+
+    def show_status_other(self):
+        swver = float(self.socket_put_and_receive("MGswver"))
+        allaxref = float(self.socket_put_and_receive("MGallaxref"))
+        tempab = float(self.socket_put_and_receive("MGtempab"))
+        timeab = float(self.socket_put_and_receive("MGtimeab"))
+        IgNoFol = float(self.socket_put_and_receive("MGIgNoFol"))
+        print(
+            f"OMNY galil firmware {swver:2.0f}, TempAbort: {tempab:1.0f}, Allaxref: {allaxref:1.0f}, TimeAbort: {timeab:1.0f}, Ignore Folerr: {IgNoFol:1.0f}\n"
+        )
+        if self.sock.port == 8083:
+            self._ogalil_switchsocket_status()
+
+
+class OMNYGalilMotor(Device, PositionerBase):
+    USER_ACCESS = ["controller", "find_reference", "omny_osamx_to_scan_center", "drive_axis_to_limit", "_ogalil_folerr_reset_and_ignore", "_ogalil_set_axis_to_pos_wo_reference_search", "get_motor_limit_switch", "axis_is_referenced", "get_motor_temperature", "folerr_status"]
+    readback = Cpt(OMNYGalilReadbackSignal, signal_name="readback", kind="hinted")
+    user_setpoint = Cpt(GalilSetpointSignal, signal_name="setpoint")
+    motor_resolution = Cpt(GalilMotorResolution, signal_name="resolution", kind="config")
+    motor_is_moving = Cpt(GalilMotorIsMoving, signal_name="motor_is_moving", kind="normal")
+    all_axes_referenced = Cpt(GalilAxesReferenced, signal_name="all_axes_referenced", kind="config")
+    high_limit_travel = Cpt(Signal, value=0, kind="omitted")
+    low_limit_travel = Cpt(Signal, value=0, kind="omitted")
+
+    SUB_READBACK = "readback"
+    SUB_CONNECTION_CHANGE = "connection_change"
+    _default_sub = SUB_READBACK
+
+    def __init__(
+        self,
+        axis_Id,
+        prefix="",
+        *,
+        name,
+        kind=None,
+        read_attrs=None,
+        configuration_attrs=None,
+        parent=None,
+        host="mpc3217.psi.ch",
+        port=8081,
+        limits=None,
+        sign=1,
+        socket_cls=SocketIO,
+        device_manager=None,
+        **kwargs,
+    ):
+        self.controller = OMNYGalilController(
+            socket_cls=socket_cls, socket_host=host, socket_port=port
+        )
+        self.axis_Id = axis_Id
+        self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
+        self.sign = sign
+        self.tolerance = kwargs.pop("tolerance", 0.5)
+        self.device_mapping = kwargs.pop("device_mapping", {})
+        self.device_manager = device_manager
+
+        if len(self.device_mapping) > 0 and self.device_manager is None:
+            raise BECConfigError(
+                "device_mapping has been specified but the device_manager cannot be accessed."
+            )
+        self.rt = self.device_mapping.get("rt")
+
+        super().__init__(
+            prefix,
+            name=name,
+            kind=kind,
+            read_attrs=read_attrs,
+            configuration_attrs=configuration_attrs,
+            parent=parent,
+            **kwargs,
+        )
+        self.readback.name = self.name
+        self.controller.subscribe(
+            self._update_connection_state, event_type=self.SUB_CONNECTION_CHANGE
+        )
+        self._update_connection_state()
+        # self.readback.subscribe(self._forward_readback, event_type=self.readback.SUB_VALUE)
+
+        if limits is not None:
+            assert len(limits) == 2
+            self.low_limit_travel.put(limits[0])
+            self.high_limit_travel.put(limits[1])
+
+    @property
+    def limits(self):
+        return (self.low_limit_travel.get(), self.high_limit_travel.get())
+
+    @property
+    def low_limit(self):
+        return self.limits[0]
+
+    @property
+    def high_limit(self):
+        return self.limits[1]
+
+    def check_value(self, pos):
+        """Check that the position is within the soft limits"""
+        low_limit, high_limit = self.limits
+
+        if low_limit < high_limit and not (low_limit <= pos <= high_limit):
+            raise LimitError(f"position={pos} not within limits {self.limits}")
+
+    def _update_connection_state(self, **kwargs):
+        for walk in self.walk_signals():
+            walk.item._metadata["connected"] = self.controller.connected
+
+    def _forward_readback(self, **kwargs):
+        kwargs.pop("sub_type")
+        self._run_subs(sub_type="readback", **kwargs)
+
+    @raise_if_disconnected
+    def move(self, position, wait=True, **kwargs):
+        """Move to a specified position, optionally waiting for motion to
+        complete.
+
+        Parameters
+        ----------
+        position
+            Position to move to
+        moved_cb : callable
+            Call this callback when movement has finished. This callback must
+            accept one keyword argument: 'obj' which will be set to this
+            positioner instance.
+        timeout : float, optional
+            Maximum time to wait for the motion. If None, the default timeout
+            for this positioner is used.
+
+        Returns
+        -------
+        status : MoveStatus
+
+        Raises
+        ------
+        TimeoutError
+            When motion takes longer than `timeout`
+        ValueError
+            On invalid positions
+        RuntimeError
+            If motion fails other than timing out
+        """
+        self._started_moving = False
+        timeout = kwargs.pop("timeout", 100)
+        status = super().move(position, timeout=timeout, **kwargs)
+        self.user_setpoint.put(position, wait=False)
+
+        def move_and_finish():
+            while self.motor_is_moving.get():
+                logger.info("motor is moving")
+                val = self.readback.read()
+                self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
+                time.sleep(0.1)
+            val = self.readback.read()
+            success = np.isclose(val[self.name]["value"], position, atol=self.tolerance)
+
+            if not success:
+                print(" stop")
+            self._done_moving(success=success)
+            logger.info("Move finished")
+
+        threading.Thread(target=move_and_finish, daemon=True).start()
+        try:
+            if wait:
+                status_wait(status)
+        except KeyboardInterrupt:
+            self.stop()
+            raise
+
+        return status
+
+    @property
+    def axis_Id(self):
+        return self._axis_Id_alpha
+
+    @axis_Id.setter
+    def axis_Id(self, val):
+        if isinstance(val, str):
+            if len(val) != 1:
+                raise ValueError("Only single-character axis_Ids are supported.")
+            self._axis_Id_alpha = val
+            self._axis_Id_numeric = self.controller.axis_Id_to_numeric(val)
+        else:
+            raise TypeError(f"Expected value of type str but received {type(val)}")
+
+    @property
+    def axis_Id_numeric(self):
+        return self._axis_Id_numeric
+
+    @axis_Id_numeric.setter
+    def axis_Id_numeric(self, val):
+        if isinstance(val, int):
+            if val > 26:
+                raise ValueError("Numeric value exceeds supported range.")
+            self._axis_Id_alpha = self.controller.axis_Id_numeric_to_alpha(val)
+            self._axis_Id_numeric = val
+        else:
+            raise TypeError(f"Expected value of type int but received {type(val)}")
+
+    @property
+    def egu(self):
+        """The engineering units (EGU) for positions"""
+        return "mm"
+
+    def _ogalil_folerr_reset_and_ignore(self):
+        # pylint: disable=protected-access
+        self.controller._ogalil_folerr_reset_and_ignore(self.axis_Id_numeric)
+
+    def _ogalil_set_axis_to_pos_wo_reference_search(self, pos_mm):
+        motor_resolution = self.motor_resolution.get()
+        self.controller._ogalil_set_axis_to_pos_wo_reference_search(self.axis_Id_numeric, self.axis_Id, pos_mm, motor_resolution, self.sign)
+        #now force position read to cache
+        val = self.readback.read()
+        self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
+
+    def find_reference(self, raise_error=1):
+        """
+        Find the reference of the axis.
+        """
+        verbose=1
+        self.controller.find_reference(self.axis_Id_numeric, verbose, raise_error)
+        #now force position read to cache
+        val = self.readback.read()
+        self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
+
+    def drive_axis_to_limit(self, direction: str) -> None:
+        """
+        Drive an axis to the limit in a specified direction.
+
+        Args:
+            direction (str): Direction in which the axis should be driven to the limit. Either 'forward' or 'reverse'.        
+        """
+        self.controller.drive_axis_to_limit(self.axis_Id_numeric, direction, verbose=1)
+        #now force position read to cache
+        val = self.readback.read()
+        self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
+
+    def get_motor_limit_switch(self) -> list:
+        """
+        Get status of the motor limit switches
+        """
+        return self.controller.get_motor_limit_switch(self.axis_Id)
+
+    def get_motor_temperature(self) -> float:
+        """
+        Get motor temperature
+        """
+        return self.controller.motor_temperature(self.axis_Id_numeric)
+
+    def axis_is_referenced(self) -> bool:
+        """
+        check if an axis is referenced
+        """
+        return self.controller.axis_is_referenced(self.axis_Id_numeric)
+
+    def _get_user_param_safe(self, device, var):
+        param = self.device_manager.devices[device].user_parameter
+        if not param or param.get(var) is None:
+            raise ValueError(f"Device {device} has no user parameter definition for {var}.")
+        return param.get(var)
+
+    def omny_osamx_to_scan_center(self, cenx):
+        if self.controller.sock.port == 8082 and self.axis_Id_numeric == 0:
+            # get last setpoint
+                osamx = self.device_manager.devices["osamx"]
+                osamx_current_setpoint = osamx.obj.readback.get()
+                omny_samx_in = self._get_user_param_safe("osamx","in")
+                if np.fabs(osamx_current_setpoint-(omny_samx_in+cenx/1000)) > 0.025:
+                    message=f"Moving osamx to scan center. new osamx target {omny_samx_in+cenx/1000:.3f}."
+                    logger.info(message)
+
+                    osamx.read_only = False
+                    #osamx.controller.("osamx", "controller.socket_put_confirmed('axspeed[0]=1000')")
+                    osamx.set(omny_samx_in+cenx/1000)
+                    time.sleep(0.1)
+                    while(osamx.motor_is_moving.get()):
+                        time.sleep(0.05)
+                    osamx.read_only = True
+                    time.sleep(2)
+                    rt = self.device_manager.devices["rtx"]
+                    if rt.enabled:
+                        rt.obj.controller.laser_tracker_on()
+                        rt.obj.controller.laser_tracker_check_and_wait_for_signalstrength()
+
+    def folerr_status(self) -> bool:
+        return self.controller.folerr_status(self.axis_Id_numeric)
+    
+    def stop(self, *, success=False):
+        self.controller.stop_all_axes()
+        return super().stop(success=success)

csaxs_bec/devices/omny/galil/sgalil_readme.md

@@ -4,7 +4,7 @@ Ophyd wrapper for the SGalil controller and stages.
 ## Integration of the device in IPython kernel
 BEC needs to be able to reach the host TCP to initiate a connection to the device.
 ```Python
-from csaxs_bec.devices.galil.sgalil_ophyd import SGalilMotor
+from csaxs_bec.devices.omny.galil.sgalil_ophyd import SGalilMotor
 samx = SGalilMotor("E", name="samx", host="129.129.122.26", port=23, sign=-1)
 samy = SGalilMotor("C", name="samy", host="129.129.122.26", port=23, sign=-1)
 # connect to the controller

csaxs_bec/devices/omny/omny_dewar.py

@@ -0,0 +1,111 @@
+import time
+import datetime
+
+from ophyd import Component as Cpt
+from ophyd import Device
+from ophyd import DynamicDeviceComponent as Dcpt
+from ophyd import EpicsSignal
+from prettytable import FRAME, PrettyTable
+import numpy as np
+
+class OMNYDewarError(Exception):
+    pass
+
+
+class OMNYDewar(Device):
+    USER_ACCESS = [
+        "show_all",
+        "is_flow_low",
+        "help",
+    ]
+    SUB_VALUE = "value"
+    _default_sub = SUB_VALUE
+
+
+
+    dewar_press_0 = Cpt(
+        EpicsSignal, name="dewar_press_0", read_pv="XOMNY-TEMP-DEWAR-PRESS0:GET"
+    )
+
+    dewar_refilling = Cpt(
+        EpicsSignal, name="dewar_refilling", read_pv="XOMNY-TEMP-DEWAR-Refilling:GET"
+    )
+
+    dewar_press_1 = Cpt(
+        EpicsSignal, name="dewar_press_1", read_pv="XOMNY-TEMP-DEWAR-PRESS1:GET"
+    )
+
+    dewar_press_2 = Cpt(
+        EpicsSignal, name="dewar_press_2", read_pv="XOMNY-TEMP-DEWAR-PRESS2:GET"
+    )
+
+    dewar_flow_0 = Cpt(
+        EpicsSignal, name="dewar_flow_0", read_pv="XOMNY-TEMP-DEWAR-FLOW0:GET"
+    )
+
+    dewar_valvepos = Cpt(
+        EpicsSignal, name="dewar_valvepos", read_pv="XOMNY-TEMP-DEWAR-ValvePos:GET"
+    )
+
+    dewar_supply_voltage = Cpt(
+        EpicsSignal, name="dewar_supply_voltage", read_pv="XOMNY-TEMP-DEWAR-SupplyVoltage:GET"
+    )
+
+    dewar_uptime_h = Cpt(
+        EpicsSignal, name="dewar_uptime_h", read_pv="XOMNY-TEMP-DEWAR-UpH:GET"
+    )
+    dewar_uptime_m = Cpt(
+        EpicsSignal, name="dewar_uptime_m", read_pv="XOMNY-TEMP-DEWAR-UpM:GET"
+    )
+    dewar_uptime_s = Cpt(
+        EpicsSignal, name="dewar_uptime_s", read_pv="XOMNY-TEMP-DEWAR-UpS:GET"
+    )
+
+    dewar_valve_movements_h = Cpt(
+        EpicsSignal, name="dewar_valve_movements_h", read_pv="XOMNY-TEMP-DEWAR-MovH:GET"
+    )
+    dewar_valve_movements_m = Cpt(
+        EpicsSignal, name="dewar_valve_movements_m", read_pv="XOMNY-TEMP-DEWAR-MovM:GET"
+    )
+    dewar_valve_movements_s = Cpt(
+        EpicsSignal, name="dewar_valve_movements_s", read_pv="XOMNY-TEMP-DEWAR-MovS:GET"
+    )
+
+    def __init__(self, prefix="", *, name, **kwargs):
+        super().__init__(prefix, name=name, **kwargs)
+        self.dewar_flow_0.subscribe(self._emit_value)
+
+    def _emit_value(self, **kwargs):
+        timestamp = kwargs.pop("timestamp", time.time())
+        self.wait_for_connection()
+        self._run_subs(sub_type=self.SUB_VALUE, timestamp=timestamp, obj=self)
+
+
+    def is_flow_low(self):
+        if(float(self.dewar_flow_0.get())<3.8):
+            return True
+        else:
+            return False
+        
+    def show_all(self):
+        red = "\x1b[91m"
+        white = "\x1b[0m"
+
+
+        print("OMNY Dewar Status")
+        print(f"  DewarPressure:           {float(self.dewar_press_0.get()):.0f} mbar")
+        print(f"  Dewar Refilling:         {float(self.dewar_refilling.get()):.0f}")
+        print(f"  LN2flow In Pressure:     {float(self.dewar_press_1.get()):.0f} mbar")
+        print(f"  LN2flow Out Pressure:    {float(self.dewar_press_2.get()):.0f} mbar")
+        print(f"  LN2flow In Flow Rate:    {float(self.dewar_flow_0.get()):.1f} l/s")
+        if self.is_flow_low():
+            print(red + "This flow rate is LOW. Increase the LN2flow In Pressure" + white)
+        print(f"  Valve Opening (0-1):     {float(self.dewar_valvepos.get()):.2f}")
+        print(f"  Valve Supply Voltage:    {float(self.dewar_supply_voltage.get()):.2f} V")
+        print(f"  Uptime of System:        {float(self.dewar_uptime_h.get()):2.0f}:{float(self.dewar_uptime_m.get()):2.0f}:{float(self.dewar_uptime_s.get()):2.0f}")
+        print(f"  Active Valve Movements:  {float(self.dewar_valve_movements_h.get()):2.0f}:{float(self.dewar_valve_movements_m.get()):2.0f}:{float(self.dewar_valve_movements_s.get()):2.0f}")
+  
+
+    def help(self):
+        print("Help for OMNY Dewar:")
+        print("This device shows an overview of the dewar status. Use show_all()")

csaxs_bec/devices/omny/omny_sample_storage.py

@@ -22,13 +22,16 @@ class OMNYSampleStorage(Device):
         "set_sample_in_samplestage",
         "unset_sample_in_samplestage",
         "get_sample_name_in_samplestage",
+        "get_sample_name_in_gripper",
         "get_sample_name",
         "is_sample_in_samplestage",
         "set_shuttle_slot",
         "unset_shuttle_slot",
         "get_shuttle_name_slot",
         "is_shuttle_slot_used",
+        "search_shuttle_in_slot",
         "show_all",
+        "help",
     ]
     SUB_VALUE = "value"
     _default_sub = SUB_VALUE
@@ -59,7 +62,7 @@ class OMNYSampleStorage(Device):
     parking_placed = Dcpt(parking_placed)
 
     sample_placed = {
-        f"parking{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_omny:{i}", {})
+        f"sample{i}": (EpicsSignal, f"XOMNY-SAMPLE_DB_omny:{i}", {})
         for i in [10, 11, 12, 13, 14, 32, 33, 34, 100, 101]
     }
     sample_placed = Dcpt(sample_placed)
@@ -136,20 +139,28 @@ class OMNYSampleStorage(Device):
         elif container == "C":
             getattr(self.sample_shuttle_C_placed, f"sample{slot_nr}").set(1)
             getattr(self.sample_shuttle_C_names, f"sample{slot_nr}").set(name)
+        elif container == "O":
+            getattr(self.sample_placed, f"sample{slot_nr}").set(1)
+            getattr(self.sample_names, f"sample{slot_nr}").set(name)
 
-    def unset_sample_slot(self, shuttle: str, slot_nr: int) -> bool:
+
+    def unset_sample_slot(self, container: str, slot_nr: int) -> bool:
         if slot_nr > 20:
             raise OMNYSampleStorageError(f"Invalid slot number {slot_nr}.")
 
-        if shuttle == "A":
+        if container == "A":
             getattr(self.sample_shuttle_A_placed, f"sample{slot_nr}").set(0)
             getattr(self.sample_shuttle_A_names, f"sample{slot_nr}").set("-")
-        if shuttle == "B":
+        elif container == "B":
             getattr(self.sample_shuttle_B_placed, f"sample{slot_nr}").set(0)
             getattr(self.sample_shuttle_B_names, f"sample{slot_nr}").set("-")
-        if shuttle == "C":
+        elif container == "C":
             getattr(self.sample_shuttle_C_placed, f"sample{slot_nr}").set(0)
             getattr(self.sample_shuttle_C_names, f"sample{slot_nr}").set("-")
+        elif container == "O":
+            getattr(self.sample_placed, f"sample{slot_nr}").set(0)
+            getattr(self.sample_names, f"sample{slot_nr}").set("-")
+
 
     def set_shuttle_slot(self, container: str, slot_nr: int) -> bool:
         if slot_nr > 6:
@@ -227,11 +238,25 @@ class OMNYSampleStorage(Device):
         val = self.sample_in_samplestage_name.get()
         return str(val)
 
+    def search_shuttle_in_slot(self, shuttle: str) -> int:
+        returnvalue = 0
+        for i in range(1, 7):
+            if self.get_shuttle_name_slot(i) == shuttle:
+                returnvalue = i
+        return returnvalue
+
     def show_all(self):
         t = PrettyTable()
+        red = "\x1b[91m"
+        green = "\x1b[92m"
+        white = "\x1b[0m"
         for ch in ["A", "B", "C"]:
             t.clear()
-            t.title = "Shuttle " + ch
+            shuttle_in_slot = self.search_shuttle_in_slot(ch)
+            if shuttle_in_slot > 0:
+                t.title = green + "Shuttle " + ch + " in OMNY slot " + str(shuttle_in_slot) + white
+            else:
+                t.title = red + "Shuttle " + ch + white
             field_names = [""]
             for ax in [1, 3, 5]:
                 row = []
@@ -260,8 +285,24 @@ class OMNYSampleStorage(Device):
             row = []
             row.extend([f"Position {i:3d}"])
             if self.is_sample_slot_used("O", i):
-                row.extend(self.get_sample_name("O", i))
+                name = self.get_sample_name("O", i)
+                row.extend([name])
             else:
                 row.extend(["free"])
             t.add_row(row)
         print(t)
+
+        print("Use dev.omny_samples.help() for assistance.")
+
+    def help(self):
+        print("Help for OMNY sample storage:")
+        print(" To get an overview use dev.omny_samples.show_all()")
+        print(" Modify a slot:")
+        print(" dev.omny_samples.unset_sample_slot('system',position)")
+        print(" dev.omny_samples.set_sample_slot('system',position,'name')")
+        print("   system can be A, B, C, O")
+        print(" dev.omny_samples.set_sample_in_gripper('name') / unset_sample_in_gripper()")
+        print(" dev.omny_samples.set_sample_in_samplestage('name'), unset_sample_in_samplestage()")
+        print(" dev.omny_samples.set_shuttle_slot(container, slot_nr) / unset_shuttle_slot(slot_nr)")
+        print(" dev.omny_samples.set_shuttle_slot('A',2)")
+        print(" omny.otransfer_help()")

csaxs_bec/devices/omny/omny_temperatures.py

@@ -0,0 +1,260 @@
+import time
+import datetime
+
+from ophyd import Component as Cpt
+from ophyd import Device
+from ophyd import DynamicDeviceComponent as Dcpt
+from ophyd import EpicsSignal
+from prettytable import FRAME, PrettyTable
+import numpy as np
+
+class OMNYTemperaturesError(Exception):
+    pass
+
+
+class OMNYTemperatures(Device):
+    USER_ACCESS = [
+        "temperature_controller_used_get_name_and_values",
+        "set_setpoint",
+        "show_all",
+        "help",
+        "_set_TEMP_default_setpoints",
+        "temperature_controller_TEMP_running",
+        "temperature_controller_CRYO_running",
+    ]
+    SUB_VALUE = "value"
+    _default_sub = SUB_VALUE
+
+    temperature = {
+        f"temperature{i}": (EpicsSignal, f"XOMNY-TEMP{i}:GET", {}) for i in range(1, 49)
+    }
+    temperature = Dcpt(temperature)
+
+    temperature_setpoint = {
+        f"temperature_setpoint{i}": (EpicsSignal, f"XOMNY-TEMP{i}:SET", {}) for i in range(1, 49)
+    }
+    temperature_setpoint = Dcpt(temperature_setpoint)
+
+    temperature_unit = {
+        f"temperature_unit{i}": (EpicsSignal, f"XOMNY-TEMP{i}:GET.EGU", {}) for i in range(1, 49)
+    }
+    temperature_unit = Dcpt(temperature_unit)
+
+    temperature_alarmstate = {
+        f"temperature_alarmstate{i}": (EpicsSignal, f"XOMNY-TEMP{i}:ALARM", {}) for i in range(1, 49)
+    }
+    temperature_alarmstate = Dcpt(temperature_alarmstate)
+
+    temperature_names = {
+        f"temperature_name{i}": (EpicsSignal, f"XOMNY-TEMP{i}:GET.DESC", {"string": True})
+        for i in range(1, 49)
+    }
+    temperature_names = Dcpt(temperature_names)
+
+    temperature_update_time = Cpt(
+        EpicsSignal, name="temperature_update_time", read_pv="XOMNY-TEMP:UPDATED.VAL"
+    )
+
+    cryo_temperature = {
+        f"cryo_temperature{i}": (EpicsSignal, f"XOMNY-TEMP-CRYO-{chr(i+ord('A')-1)}:GET.VAL", {}) for i in range(1,5)
+    }
+    cryo_temperature = Dcpt(cryo_temperature)
+
+    cryo_temperature_setpoint = {
+        f"cryo_temperature_setpoint{i}": (EpicsSignal, f"XOMNY-TEMP-CRYO-{chr(i+ord('A')-1)}:SET.VAL", {}) for i in range(1,5)
+    }
+    cryo_temperature_setpoint = Dcpt(cryo_temperature_setpoint)
+
+    cryo_temperature_name = {
+        f"cryo_temperature_name{i}": (EpicsSignal, f"XOMNY-TEMP-CRYO-{chr(i+ord('A')-1)}:GET.DESC", {}) for i in range(1,5)
+    }
+    cryo_temperature_name = Dcpt(cryo_temperature_name)
+
+    cryo_temperature_update_time = Cpt(
+        EpicsSignal, name="cryo_temperature_update_time", read_pv="XOMNY-TEMP-CRYO:UPDATED.VAL"
+    )
+
+    cryo_temperature_closed_loop = Cpt(
+        EpicsSignal, name="cryo_temperature_closed_loop", read_pv="XOMNY-TEMP-CRYO:CLOSEDLOOP.VAL"
+    )
+
+    def __init__(self, prefix="", *, name, **kwargs):
+        super().__init__(prefix, name=name, **kwargs)
+        self.temperature.temperature1.subscribe(self._emit_value)
+
+    def _emit_value(self, **kwargs):
+        timestamp = kwargs.pop("timestamp", time.time())
+        self.wait_for_connection()
+        self._run_subs(sub_type=self.SUB_VALUE, timestamp=timestamp, obj=self)
+
+    def set_setpoint(self, type: str, controller_nr: int, temperature: float):
+        if type == "TEMP":
+            getattr(self.temperature_setpoint, f"temperature_setpoint{controller_nr}").set(temperature)
+        elif type == "CRYO":
+            getattr(self.cryo_temperature_setpoint, f"cryo_temperature_setpoint{controller_nr}").set(temperature)
+        else:
+            raise OMNYTemperaturesError("invalid type")
+
+
+    def _set_TEMP_default_setpoints(self):
+        self.set_setpoint("TEMP",8,-199.9)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",9,23)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",10,73.2)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",16,-199.9)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",17,23)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",18,26)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",19,26)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",20,26)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",21,23)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",22,-199.9)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",23,-199.9)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",24,-199.9)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",25,25)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",27,25)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",28,73.2)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",29,73.2)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",30,73.2)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",31,73.2)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",35,25)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",36,25)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",37,25)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",38,73.2)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",39,73.2)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",41,30)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",42,25)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",44,25)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",45,-199.9)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",46,73.2)
+        time.sleep(0.1)
+        self.set_setpoint("TEMP",47,73.2)
+        time.sleep(0.1)
+
+    def temperature_controller_TEMP_running(self):
+        time_diff = np.fabs(float(self.temperature_update_time.get()) - time.time())
+        if time_diff > 600:
+            return False
+        else:
+            return True
+
+    def temperature_controller_CRYO_running(self):
+        time_diff = np.fabs(float(self.cryo_temperature_update_time.get()) - time.time())
+        if time_diff > 600:
+            return False
+        else:
+            return True
+
+    def temperature_controller_used_get_name_and_values(self, type: str, controller_nr: int) -> bool:
+        if type == "TEMP":
+            controller_name = str(getattr(self.temperature_names, f"temperature_name{controller_nr}").get())
+            if controller_name == '-' or controller_name == 'NOT INITIALIZED':
+                return (False, "none", 0, 0, "none", False, False)
+            else:
+                temperature = float(getattr(self.temperature, f"temperature{controller_nr}").get())
+                setpoint = float(getattr(self.temperature_setpoint, f"temperature_setpoint{controller_nr}").get())
+                unit = str(getattr(self.temperature_unit, f"temperature_unit{controller_nr}").get())
+                alarmstate = bool(getattr(self.temperature_alarmstate, f"temperature_alarmstate{controller_nr}").get())
+                controller_running = self.temperature_controller_TEMP_running()
+                return (True, controller_name, temperature, setpoint, unit, alarmstate,controller_running)
+        elif type == "CRYO":
+            controller_name = str(getattr(self.cryo_temperature_name, f"cryo_temperature_name{controller_nr}").get())
+            temperature = float(getattr(self.cryo_temperature, f"cryo_temperature{controller_nr}").get())
+            setpoint = float(getattr(self.cryo_temperature_setpoint, f"cryo_temperature_setpoint{controller_nr}").get())
+            unit = 'K'
+            alarmstate = False
+            controller_running = self.temperature_controller_CRYO_running()
+            return (True, controller_name, temperature, setpoint, unit, alarmstate,controller_running)
+        else:
+            raise OMNYTemperaturesError("invalid type")
+
+
+
+    def show_all(self):
+        red = "\x1b[91m"
+        white = "\x1b[0m"
+        t = PrettyTable()
+        t.clear()
+        t.title = "OMNY Temperature Controllers"
+        t.field_names = ["Channel","Name","Temperature","Setpoint","Unit","AlarmState"]
+        for i in range (1,49):
+            controller_status = self.temperature_controller_used_get_name_and_values("TEMP", i)
+            if controller_status[0]:
+                row = []
+                row.extend([f"{i}"])
+                row.extend([controller_status[1]])
+                row.extend([f"{controller_status[2]:.2f}"])
+                if (controller_status[3] < -199 and controller_status[4] == "degC") or (np.fabs(controller_status[3]-73.25) < 0.1 and controller_status[4] == "K"):
+                    row.extend([" "])
+                else:
+                    row.extend([f"{controller_status[3]:.2f}"])
+                row.extend([f"{controller_status[4]}"])
+                if controller_status[5]:
+                    row.extend(["Alarm"])
+                else:
+                    row.extend([" "])
+                t.add_row(row)
+        t.header = True
+        t.vrules = FRAME
+        print(t)
+        if not self.temperature_controller_TEMP_running():
+            print (red + "Warning: the temperature controller communication is not running" + white)
+        print (f"The last update was {datetime.datetime.fromtimestamp(float(self.temperature_update_time.get())).strftime('%c')}\n")
+
+
+        t.clear()
+        t.title = "OMNY Cryo Temperature Controller"
+        t.field_names = ["Channel","Name","Temperature","Setpoint","Unit"]
+        for i in range (1,5):
+            controller_status = self.temperature_controller_used_get_name_and_values("CRYO", i)
+            if controller_status[0]:
+                row = []
+                row.extend([f"{i}"])
+                row.extend([controller_status[1]])
+                row.extend([f"{controller_status[2]:.2f}"])
+                row.extend([f"{controller_status[3]:.2f}"])
+                row.extend([f"{controller_status[4]}"])
+                t.add_row(row)
+        t.header = True
+        t.vrules = FRAME
+        print(t)
+
+        if bool(self.cryo_temperature_closed_loop.get()):
+            print ("Cryo controller is running in closed loop.")
+        else:
+            print ("Cryo controller is running in " + red + "open" + white + " loop.")
+
+        if not self.temperature_controller_CRYO_running():
+            print (red + "Warning: the temperature controller communication is not running" + white)
+
+        print (f"The last update was {datetime.datetime.fromtimestamp(float(self.cryo_temperature_update_time.get())).strftime('%c')}\n")
+
+    print("Use dev.omny_temperatures.help() for assistance.")
+
+    def help(self):
+        print("Help for OMNY temperatures:")

csaxs_bec/devices/omny/omny_vcs.py

@@ -0,0 +1,161 @@
+import time
+import datetime
+
+from ophyd import Component as Cpt
+from ophyd import Device
+from ophyd import DynamicDeviceComponent as Dcpt
+from ophyd import EpicsSignal
+from prettytable import FRAME, PrettyTable
+import numpy as np
+
+class OMNYVCSError(Exception):
+    pass
+
+
+class OMNYVCS(Device):
+    USER_ACCESS = [
+        "show_all",
+        "valves_in_measurement_position",
+        "help",
+    ]
+    SUB_VALUE = "value"
+    _default_sub = SUB_VALUE
+
+
+
+    XOMNY_ES1_EXPMP1_VOLTAGE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_EXPMP1_VOLTAGE", read_pv="XOMNY-ES1-EXPMP1:VOLTAGE"
+    )
+
+    XOMNY_ES1_EXPMP1_PRESSURE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_EXPMP1_PRESSURE", read_pv="XOMNY-ES1-EXPMP1:PRESSURE"
+    )
+
+    XOMNY_ES1_PU2MT1_VOLTAGE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_PU2MT1_VOLTAGE", read_pv="XOMNY-ES1-PU2MT1:VOLTAGE"
+    )
+
+    XOMNY_ES1_PU2MT1_PRESSURE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_PU2MT1_PRESSURE", read_pv="XOMNY-ES1-PU2MT1:PRESSURE"
+    )
+
+    XOMNY_ES1_PU1MF1_VOLTAGE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_PU1MF1_VOLTAGE", read_pv="XOMNY-ES1-PU1MF1:VOLTAGE"
+    )
+
+    XOMNY_ES1_PU1MF1_PRESSURE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_PU1MF1_PRESSURE", read_pv="XOMNY-ES1-PU1MF1:PRESSURE"
+    )
+
+    XOMNY_ES1_LL1MF1_VOLTAGE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_LL1MF1_VOLTAGE", read_pv="XOMNY-ES1-LL1MF1:VOLTAGE"
+    )
+
+    XOMNY_ES1_LL1MF1_PRESSURE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_LL1MF1_PRESSURE", read_pv="XOMNY-ES1-LL1MF1:PRESSURE"
+    )
+
+    XOMNY_ES1_VV1MT1_VOLTAGE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_VV1MT1_VOLTAGE", read_pv="XOMNY-ES1-VV1MT1:VOLTAGE"
+    )
+
+    XOMNY_ES1_VV1MT1_PRESSURE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_VV1MT1_PRESSURE", read_pv="XOMNY-ES1-VV1MT1:PRESSURE"
+    )
+
+    XOMNY_ES1_EXPVG1_POSITION = Cpt(
+        EpicsSignal, name="XOMNY_ES1_EXPVG1_POSITION", read_pv="XOMNY-ES1-EXPVG1:POSITION"
+    )
+
+    XOMNY_ES1_WI2VG1_POSITION = Cpt(
+        EpicsSignal, name="XOMNY_ES1_WI2VG1_POSITION", read_pv="XOMNY-ES1-WI2VG1:POSITION"
+    )
+
+    XOMNY_ES1_EXPVG2_POSITION = Cpt(
+        EpicsSignal, name="XOMNY_ES1_EXPVG2_POSITION", read_pv="XOMNY-ES1-EXPVG2:POSITION"
+    )
+
+    XOMNY_ES1_LL1VG1_CLOSE = Cpt(
+        EpicsSignal, name="XOMNY_ES1_LL1VG1_CLOSE", read_pv="XOMNY-ES1-LL1VG1:CLOSE"
+    )
+
+    XOMNY_ES1_LL1DK_VG_CLOSED = Cpt(
+        EpicsSignal, name="XOMNY_ES1_LL1DK_VG_CLOSED", read_pv="XOMNY-ES1-LL1DK:VG_CLOSED"
+    )
+
+    XOMNY_ES1_LL1SH_VG_CLOSED = Cpt(
+        EpicsSignal, name="XOMNY_ES1_LL1SH_VG_CLOSED", read_pv="XOMNY-ES1-LL1SH:VG_CLOSED"
+    )
+
+    XOMNY_ES1_LL1SH_MAN_POS_OK = Cpt(
+        EpicsSignal, name="XOMNY_ES1_LL1SH_MAN_POS_OK", read_pv="XOMNY-ES1-LL1SH:MAN_POS_OK"
+    )
+
+
+    def __init__(self, prefix="", *, name, **kwargs):
+        super().__init__(prefix, name=name, **kwargs)
+        self.XOMNY_ES1_LL1SH_MAN_POS_OK.subscribe(self._emit_value)
+
+    def _emit_value(self, **kwargs):
+        timestamp = kwargs.pop("timestamp", time.time())
+        self.wait_for_connection()
+        self._run_subs(sub_type=self.SUB_VALUE, timestamp=timestamp, obj=self)
+
+        
+    def show_all(self):
+        red = "\x1b[91m"
+        white = "\x1b[0m"
+
+        print("OMNY Vaccum Status")
+        if float(self.XOMNY_ES1_EXPMP1_VOLTAGE.get()) < 0.5:
+            print(red + "  Main chamber:    Sensor failure" + white)
+        else:
+            print(f"  Main chamber:    {float(self.XOMNY_ES1_EXPMP1_PRESSURE.get()):.2e} mbar")
+  
+        if float(self.XOMNY_ES1_PU2MT1_VOLTAGE.get()) < 0.5:
+            print(red + "  Flight tube:     Sensor failure" + white)
+        else:
+            print(f"  Flight tube:     {float(self.XOMNY_ES1_PU2MT1_PRESSURE.get()):.2e} mbar")
+  
+        if float(self.XOMNY_ES1_PU1MF1_VOLTAGE.get()) < 0.5:
+            print(red+"  Beamline:        Sensor failure"+white)
+        else:
+            print(f"  Beamline:        {float(self.XOMNY_ES1_PU1MF1_PRESSURE.get()):.2e} mbar")
+
+        if float(self.XOMNY_ES1_LL1MF1_VOLTAGE.get()) < 0.5:
+            print(red+"  LoadLock:        Sensor failure"+white)
+        else:
+            print(f"  LoadLock:        {float(self.XOMNY_ES1_LL1MF1_PRESSURE.get()):.2e} mbar")
+
+        if float(self.XOMNY_ES1_VV1MT1_VOLTAGE.get()) < 0.5:
+            print(red+"  Pre-pump:        Sensor failure"+white)
+        else:
+            print(f"  Pre-pump:        {float(self.XOMNY_ES1_VV1MT1_PRESSURE.get()):.2e} mbar")
+
+        print("\nValve status")
+        print(f"  Upstream gate valve:        {str(self.XOMNY_ES1_EXPVG1_POSITION.get())}")
+#printf ("  Upstream window valve:      %s\n", _ovcs_upstream_window_valve)
+        print(f"  Downstream window bypass:   {str(self.XOMNY_ES1_WI2VG1_POSITION.get())}")
+        print(f"  Downstream gate valve:      {str(self.XOMNY_ES1_EXPVG2_POSITION.get())}")
+        if self.valves_in_measurement_position():
+            print("The OMNY valves are in the correct configuration to perform a measurement")
+        else:
+            print(red+"The valves of the OMNY vacuum system are not in the state for measurements."+white)
+
+
+        print("\nLoad Lock Status")
+        print(f"  Chamber:            {str(self.XOMNY_ES1_LL1VG1_CLOSE.get())}")
+        print(f"  Dock:               {str(self.XOMNY_ES1_LL1DK_VG_CLOSED.get())}")
+        print(f"  Shuttle:            {str(self.XOMNY_ES1_LL1SH_VG_CLOSED.get())}")
+        print(f"  Manipulator status: {str(self.XOMNY_ES1_LL1SH_MAN_POS_OK.get())}")
+
+    def valves_in_measurement_position(self):
+        if str(self.XOMNY_ES1_EXPVG1_POSITION.get()) == "OPEN" and str(self.XOMNY_ES1_WI2VG1_POSITION.get()) == "CLOSED" and str(self.XOMNY_ES1_EXPVG2_POSITION.get()) == "OPEN":
+            return True
+        else:
+            return False
+
+
+    def help(self):
+        print("Help for OMNY Vacuum System:")
+        print("This device shows an overview of the OMNY vacuum status. Use show_all()")

csaxs_bec/devices/omny/rt/rt_flomni_ophyd.py

@@ -3,29 +3,31 @@ import time
 from typing import List
 
 import numpy as np
-from bec_lib import MessageEndpoints, bec_logger, messages
+from bec_lib import bec_logger, messages
+from bec_lib.endpoints import MessageEndpoints
 from ophyd import Component as Cpt
 from ophyd import Device, PositionerBase, Signal
 from ophyd.status import wait as status_wait
 from ophyd.utils import LimitError
-from csaxs_bec.devices.rt_lamni.rt_ophyd import (
+from ophyd_devices.utils.controller import Controller, threadlocked
+from ophyd_devices.utils.socket import SocketIO, raise_if_disconnected
+from prettytable import PrettyTable
+
+from csaxs_bec.devices.omny.rt.rt_ophyd import (
     BECConfigError,
     RtCommunicationError,
-    RtController,
     RtError,
     RtReadbackSignal,
     RtSetpointSignal,
     RtSignalRO,
     retry_once,
 )
-from ophyd_devices.utils.controller import threadlocked
-from ophyd_devices.utils.socket import SocketIO, raise_if_disconnected
-from prettytable import PrettyTable
 
 logger = bec_logger.logger
 
 
-class RtFlomniController(RtController):
+class RtFlomniController(Controller):
+    _axes_per_controller = 3
     USER_ACCESS = [
         "socket_put_and_receive",
         "set_rotation_angle",
@@ -45,12 +47,13 @@ class RtFlomniController(RtController):
         "read_ssi_interferometer",
         "laser_tracker_check_signalstrength",
         "laser_tracker_check_enabled",
+        "is_axis_moving",
     ]
 
     def __init__(
         self,
         *,
-        name=None,
+        name="RtFlomniController",
         socket_cls=None,
         socket_host=None,
         socket_port=None,
@@ -73,6 +76,15 @@ class RtFlomniController(RtController):
         self._min_scan_buffer_reached = False
         self.rt_pid_voltage = None
 
+    def is_axis_moving(self, axis_Id) -> bool:
+        # this checks that axis is on target
+        axis_is_on_target = bool(float(self.socket_put_and_receive("o")))
+        return not axis_is_on_target
+
+    @threadlocked
+    def stop_all_axes(self):
+        self.socket_put("sc")
+
     def add_pos_to_scan(self, positions) -> None:
         def send_positions(parent, positions):
             parent._min_scan_buffer_reached = False
@@ -487,7 +499,7 @@ class RtFlomniController(RtController):
             MessageEndpoints.device_status("rt_scan"),
             messages.DeviceStatusMessage(
                 device="rt_scan", status=1, metadata=self.readout_metadata
-            ).dumps(),
+            ),
         )
         # while scan is running
         while mode > 0:
@@ -522,13 +534,13 @@ class RtFlomniController(RtController):
             MessageEndpoints.device_status("rt_scan"),
             messages.DeviceStatusMessage(
                 device="rt_scan", status=0, metadata=self.readout_metadata
-            ).dumps(),
+            ),
         )
 
         logger.info(
             "Flomni statistics: Average of all standard deviations: x"
-            f" {self.average_stdeviations_x_st_fzp/number_of_samples_to_read}, y"
-            f" {self.average_stdeviations_y_st_fzp/number_of_samples_to_read}."
+            f" {self.average_stdeviations_x_st_fzp/read_counter*1000:.1f}, y"
+            f" {self.average_stdeviations_y_st_fzp/read_counter*1000:.1f}"
         )
 
     def publish_device_data(self, signals, point_id):
@@ -536,7 +548,7 @@ class RtFlomniController(RtController):
             MessageEndpoints.device_read("rt_flomni"),
             messages.DeviceMessage(
                 signals=signals, metadata={"point_id": point_id, **self.readout_metadata}
-            ).dumps(),
+            ),
         )
 
     def start_readout(self):
@@ -683,15 +695,16 @@ class RtFlomniMotor(Device, PositionerBase):
     def high_limit(self):
         return self.limits[1]
 
-    def check_value(self, pos):
+    def check_value(self, value, **kwargs):
         """Check that the position is within the soft limits"""
         low_limit, high_limit = self.limits
 
-        if low_limit < high_limit and not (low_limit <= pos <= high_limit):
-            raise LimitError(f"position={pos} not within limits {self.limits}")
+        if low_limit < high_limit and not (low_limit <= value <= high_limit):
+            raise LimitError(f"position={value} not within limits {self.limits}")
 
     def _update_connection_state(self, **kwargs):
         for walk in self.walk_signals():
+            # pylint: disable=protected-access
             walk.item._metadata["connected"] = self.controller.connected
 
     def _forward_readback(self, **kwargs):
@@ -761,7 +774,7 @@ class RtFlomniMotor(Device, PositionerBase):
     def axis_Id(self, val):
         if isinstance(val, str):
             if len(val) != 1:
-                raise ValueError(f"Only single-character axis_Ids are supported.")
+                raise ValueError("Only single-character axis_Ids are supported.")
             self._axis_Id_alpha = val
             self._axis_Id_numeric = ord(val.lower()) - 97
         else:
@@ -775,7 +788,7 @@ class RtFlomniMotor(Device, PositionerBase):
     def axis_Id_numeric(self, val):
         if isinstance(val, int):
             if val > 26:
-                raise ValueError(f"Numeric value exceeds supported range.")
+                raise ValueError("Numeric value exceeds supported range.")
             self._axis_Id_alpha = val
             self._axis_Id_numeric = (chr(val + 97)).capitalize()
         else:
@@ -789,14 +802,6 @@ class RtFlomniMotor(Device, PositionerBase):
         """The engineering units (EGU) for positions"""
         return "um"
 
-    # how is this used later?
-
-    def stage(self) -> List[object]:
-        return super().stage()
-
-    def unstage(self) -> List[object]:
-        return super().unstage()
-
     def stop(self, *, success=False):
         self.controller.stop_all_axes()
         self._stopped = True

csaxs_bec/devices/omny/rt/rt_lamni_ophyd.py

@@ -3,7 +3,8 @@ import threading
 import time
 
 import numpy as np
-from bec_lib import MessageEndpoints, bec_logger, messages
+from bec_lib import bec_logger, messages
+from bec_lib.endpoints import MessageEndpoints
 from ophyd import Component as Cpt
 from ophyd import Device, PositionerBase, Signal
 from ophyd.status import wait as status_wait
@@ -11,6 +12,8 @@ from ophyd.utils import LimitError, ReadOnlyError
 from ophyd_devices.utils.controller import Controller, threadlocked
 from ophyd_devices.utils.socket import SocketIO, SocketSignal, raise_if_disconnected
 
+from csaxs_bec.devices.omny.rt.rt_ophyd import RtCommunicationError, RtError
+
 logger = bec_logger.logger
 
 
@@ -41,6 +44,11 @@ def retry_once(fcn):
 
 
 class RtLamniController(Controller):
+    """
+    RT-Lamni controller class for all rt devices.
+    """
+
+    _axes_per_controller = 3
     USER_ACCESS = [
         "socket_put_and_receive",
         "set_rotation_angle",
@@ -60,110 +68,25 @@ class RtLamniController(Controller):
         self,
         *,
         name="RtLamniController",
-        kind=None,
-        parent=None,
-        socket=None,
+        socket_cls=None,
+        socket_host=None,
+        socket_port=None,
         attr_name="",
+        parent=None,
         labels=None,
+        kind=None,
     ):
-        if not hasattr(self, "_initialized") or not self._initialized:
-            self._rtlamni_axis_per_controller = 3
-            self._axis = [None for axis_num in range(self._rtlamni_axis_per_controller)]
-            self._min_scan_buffer_reached = False
-            super().__init__(
-                name=name,
-                socket=socket,
-                attr_name=attr_name,
-                parent=parent,
-                labels=labels,
-                kind=kind,
-            )
-        self.readout_metadata = {}
-
-    def on(self, controller_num=0) -> None:
-        """Open a new socket connection to the controller"""
-        if not self.connected:
-            try:
-                self.sock.open()
-                # discuss - after disconnect takes a while for the server to be ready again
-                max_retries = 10
-                tries = 0
-                while not self.connected:
-                    try:
-                        welcome_message = self.sock.receive()
-                        self.connected = True
-                    except ConnectionResetError as conn_reset:
-                        if tries > max_retries:
-                            raise conn_reset
-                        tries += 1
-                        time.sleep(2)
-            except ConnectionRefusedError as conn_error:
-                logger.error("Failed to open a connection to RTLamNI.")
-                raise RtLamniCommunicationError from conn_error
-
-        else:
-            logger.info("The connection has already been established.")
-            # warnings.warn(f"The connection has already been established.", stacklevel=2)
-
-        self._update_flyer_device_info()
-
-    def off(self) -> None:
-        """Close the socket connection to the controller"""
-        if self.connected:
-            self.sock.close()
-            self.connected = False
-        else:
-            logger.info("The connection is already closed.")
-
-    def set_axis(self, axis: Device, axis_nr: int) -> None:
-        """Assign an axis to a device instance.
-
-        Args:
-            axis (Device): Device instance (e.g. GalilMotor)
-            axis_nr (int): Controller axis number
-
-        """
-        self._axis[axis_nr] = axis
-
-    @threadlocked
-    def socket_put(self, val: str) -> None:
-        self.sock.put(f"{val}\n".encode())
-
-    @threadlocked
-    def socket_get(self) -> str:
-        return self.sock.receive().decode()
-
-    @retry_once
-    @threadlocked
-    def socket_put_and_receive(self, val: str, remove_trailing_chars=True) -> str:
-        self.socket_put(val)
-        if remove_trailing_chars:
-            return self._remove_trailing_characters(self.sock.receive().decode())
-        return self.socket_get()
-
-    def is_axis_moving(self, axis_Id) -> bool:
-        # this checks that axis is on target
-        axis_is_on_target = bool(float(self.socket_put_and_receive(f"o")))
-        return not axis_is_on_target
-
-    #    def is_thread_active(self, thread_id: int) -> bool:
-    #        val = float(self.socket_put_and_receive(f"MG_XQ{thread_id}"))
-    #        if val == -1:
-    #            return False
-    #        return True
-
-    def _remove_trailing_characters(self, var) -> str:
-        if len(var) > 1:
-            return var.split("\r\n")[0]
-        return var
-
-    @threadlocked
-    def set_rotation_angle(self, val: float):
-        self.socket_put(f"a{(val-300+30.538)/180*np.pi}")
-
-    @threadlocked
-    def stop_all_axes(self):
-        self.socket_put("sc")
+        super().__init__(
+            name=name,
+            socket_cls=socket_cls,
+            socket_host=socket_host,
+            socket_port=socket_port,
+            attr_name=attr_name,
+            parent=parent,
+            labels=labels,
+            kind=kind,
+        )
+        self._min_scan_buffer_reached = False
 
     @threadlocked
     def feedback_disable(self):
@@ -175,6 +98,19 @@ class RtLamniController(Controller):
         self.set_device_enabled("lopty", True)
         self.set_device_enabled("loptz", True)
 
+    def is_axis_moving(self, axis_Id) -> bool:
+        # this checks that axis is on target
+        axis_is_on_target = bool(float(self.socket_put_and_receive("o")))
+        return not axis_is_on_target
+
+    @threadlocked
+    def stop_all_axes(self):
+        self.socket_put("sc")
+
+    @threadlocked
+    def set_rotation_angle(self, val: float):
+        self.socket_put(f"a{(val-300+30.538)/180*np.pi}")
+
     @threadlocked
     def _set_axis_velocity(self, um_per_s):
         self.socket_put(f"V{um_per_s}")
@@ -234,19 +170,6 @@ class RtLamniController(Controller):
         self.set_device_enabled("lopty", True)
         self.set_device_enabled("loptz", True)
 
-    def get_device_manager(self):
-        for axis in self._axis:
-            if hasattr(axis, "device_manager") and axis.device_manager:
-                return axis.device_manager
-        raise BECConfigError("Could not access the device_manager")
-
-    def get_axis_by_name(self, name):
-        for axis in self._axis:
-            if axis:
-                if axis.name == name:
-                    return axis
-        raise RuntimeError(f"Could not find an axis with name {name}")
-
     @threadlocked
     def clear_trajectory_generator(self):
         self.socket_put("sc")
@@ -256,7 +179,7 @@ class RtLamniController(Controller):
         def send_positions(parent, positions):
             parent._min_scan_buffer_reached = False
             for pos_index, pos in enumerate(positions):
-                parent.socket_put_and_receive(f"s{pos[0]:.05f},{pos[1]:05f},0")
+                parent.socket_put_and_receive(f"s{pos[0]:.05f},{pos[1]:.05f},0")
                 if pos_index > 100:
                     parent._min_scan_buffer_reached = True
             parent._min_scan_buffer_reached = True
@@ -268,7 +191,7 @@ class RtLamniController(Controller):
     def get_scan_status(self):
         return_table = (self.socket_put_and_receive(f"sr")).split(",")
         if len(return_table) != 3:
-            raise RtLamniCommunicationError(
+            raise RtCommunicationError(
                 f"Expected to receive 3 return values. Instead received {return_table}"
             )
         mode = int(return_table[0])
@@ -288,7 +211,7 @@ class RtLamniController(Controller):
             logger.error(
                 "Cannot start scan because feedback loop is not running or there is an interferometer error."
             )
-            raise RtLamniError(
+            raise RtError(
                 "Cannot start scan because feedback loop is not running or there is an interferometer error."
             )
             # here exception
@@ -296,7 +219,7 @@ class RtLamniController(Controller):
 
         if number_of_positions_planned == 0:
             logger.error("Cannot start scan because no target positions are planned.")
-            raise RtLamniError("Cannot start scan because no target positions are planned.")
+            raise RtError("Cannot start scan because no target positions are planned.")
             # hier exception
         # start a point-by-point scan (for cont scan in flomni it would be "sa")
         self.socket_put_and_receive("sd")
@@ -305,29 +228,6 @@ class RtLamniController(Controller):
         readout = threading.Thread(target=self.read_positions_from_sampler)
         readout.start()
 
-    def _update_flyer_device_info(self):
-        flyer_info = self._get_flyer_device_info()
-        self.get_device_manager().connector.set(
-            MessageEndpoints.device_info("rt_scan"),
-            messages.DeviceInfoMessage(device="rt_scan", info=flyer_info),
-        )
-
-    def _get_flyer_device_info(self) -> dict:
-        return {
-            "device_name": self.name,
-            "device_attr_name": getattr(self, "attr_name", ""),
-            "device_dotted_name": getattr(self, "dotted_name", ""),
-            "device_info": {
-                "device_base_class": "ophydobject",
-                "signals": [],
-                "hints": {"fields": ["average_x_st_fzp", "average_y_st_fzp"]},
-                "describe": {},
-                "describe_configuration": {},
-                "sub_devices": [],
-                "custom_user_access": [],
-            },
-        }
-
     def kickoff(self, metadata):
         self.readout_metadata = metadata
         while not self._min_scan_buffer_reached:
@@ -439,7 +339,7 @@ class RtLamniController(Controller):
         )
 
     def feedback_status_angle_lamni(self) -> bool:
-        return_table = (self.socket_put_and_receive(f"J7")).split(",")
+        return_table = (self.socket_put_and_receive("J7")).split(",")
         logger.debug(
             f"LamNI angle interferomter status {bool(return_table[0])}, position {float(return_table[1])}, signal {float(return_table[2])}"
         )
@@ -448,21 +348,21 @@ class RtLamniController(Controller):
     def feedback_enable_with_reset(self):
         if not self.feedback_status_angle_lamni():
             self.feedback_disable_and_even_reset_lamni_angle_interferometer()
-            logger.info(f"LamNI resetting interferometer inclusive angular interferomter.")
+            logger.info("LamNI resetting interferometer inclusive angular interferomter.")
         else:
             self.feedback_disable()
             logger.info(
-                f"LamNI resetting interferomter except angular interferometer which is already running."
+                "LamNI resetting interferomter except angular interferometer which is already running."
             )
 
         # set these as closed loop target position
 
-        self.socket_put(f"pa0,0")
+        self.socket_put("pa0,0")
         self.get_axis_by_name("rtx").user_setpoint.setpoint = 0
-        self.socket_put(f"pa1,0")
+        self.socket_put("pa1,0")
         self.get_axis_by_name("rty").user_setpoint.setpoint = 0
         self.socket_put(
-            f"pa2,0"
+            "pa2,0"
         )  # we set all three outputs of the traj. gen. although in LamNI case only 0,1 are used
         self.clear_trajectory_generator()
 
@@ -476,7 +376,7 @@ class RtLamniController(Controller):
             logger.error(
                 "Cannot enable feedback. The small rotation air is on and/or orchestra disabled by the motor controller."
             )
-            raise RtLamniError(
+            raise RtError(
                 "Cannot enable feedback. The small rotation air is on and/or orchestra disabled by the motor controller."
             )
 
@@ -515,7 +415,7 @@ class RtLamniController(Controller):
             logger.error(
                 "Cannot start scan because feedback loop is not running or there is an interferometer error."
             )
-            raise RtLamniError(
+            raise RtError(
                 "Cannot start scan because feedback loop is not running or there is an interferometer error."
             )
 
@@ -523,15 +423,6 @@ class RtLamniController(Controller):
 
         # ptychography_alignment_done = 0
 
-    def set_device_enabled(self, device_name: str, enabled: bool) -> None:
-        """enable / disable a device"""
-        if device_name not in self.get_device_manager().devices:
-            logger.warning(
-                f"Device {device_name} is not configured and cannot be enabled/disabled."
-            )
-            return
-        self.get_device_manager().devices[device_name].read_only = not enabled
-
 
 class RtLamniSignalBase(SocketSignal):
     def __init__(self, signal_name, **kwargs):
@@ -567,7 +458,7 @@ class RtLamniReadbackSignal(RtLamniSignalRO):
             readback_index = 1
         else:
             raise RtLamniError("Currently, only two axes are supported.")
-
+        print(return_table)
         current_pos = float(return_table[readback_index])
 
         current_pos *= self.parent.sign
@@ -667,7 +558,9 @@ class RtLamniMotor(Device, PositionerBase):
     ):
         self.axis_Id = axis_Id
         self.sign = sign
-        self.controller = RtLamniController(socket=socket_cls(host=host, port=port))
+        self.controller = RtLamniController(
+            socket_cls=socket_cls, socket_host=host, socket_port=port
+        )
         self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
         self.device_manager = device_manager
         self.tolerance = kwargs.pop("tolerance", 0.5)
@@ -705,15 +598,16 @@ class RtLamniMotor(Device, PositionerBase):
     def high_limit(self):
         return self.limits[1]
 
-    def check_value(self, pos):
+    def check_value(self, value, **kwargs):
         """Check that the position is within the soft limits"""
         low_limit, high_limit = self.limits
 
-        if low_limit < high_limit and not (low_limit <= pos <= high_limit):
-            raise LimitError(f"position={pos} not within limits {self.limits}")
+        if low_limit < high_limit and not (low_limit <= value <= high_limit):
+            raise LimitError(f"position={value} not within limits {self.limits}")
 
     def _update_connection_state(self, **kwargs):
         for walk in self.walk_signals():
+            # pylint: disable=protected-access
             walk.item._metadata["connected"] = self.controller.connected
 
     def _forward_readback(self, **kwargs):
@@ -782,7 +676,7 @@ class RtLamniMotor(Device, PositionerBase):
     def axis_Id(self, val):
         if isinstance(val, str):
             if len(val) != 1:
-                raise ValueError(f"Only single-character axis_Ids are supported.")
+                raise ValueError("Only single-character axis_Ids are supported.")
             self._axis_Id_alpha = val
             self._axis_Id_numeric = ord(val.lower()) - 97
         else:
@@ -796,7 +690,7 @@ class RtLamniMotor(Device, PositionerBase):
     def axis_Id_numeric(self, val):
         if isinstance(val, int):
             if val > 26:
-                raise ValueError(f"Numeric value exceeds supported range.")
+                raise ValueError("Numeric value exceeds supported range.")
             self._axis_Id_alpha = val
             self._axis_Id_numeric = (chr(val + 97)).capitalize()
         else:
@@ -823,9 +717,7 @@ class RtLamniMotor(Device, PositionerBase):
         return super().stop(success=success)
 
 
-if __name__ == "__main__":
-    logging.basicConfig(level=logging.DEBUG)
-
+if __name__ == "__main__":  # pragma: no cover
     mock = False
     if not mock:
         rty = RtLamniMotor("B", name="rty", host="mpc2680.psi.ch", port=3333, sign=1)

csaxs_bec/devices/omny/rt/rt_ophyd.py

@@ -0,0 +1,140 @@
+"""
+This module contains base signals for RT devices. Controller and motors are implemented in the 
+bespoke modules such as `rt_flomni_ophyd.py` or `rt_lamni_ophyd.py`.
+"""
+
+import functools
+import time
+
+from bec_lib import bec_logger
+from ophyd.utils import ReadOnlyError
+from ophyd_devices.utils.controller import ControllerCommunicationError, threadlocked
+from ophyd_devices.utils.socket import SocketSignal
+
+logger = bec_logger.logger
+
+
+class RtCommunicationError(ControllerCommunicationError):
+    pass
+
+
+class RtError(ControllerCommunicationError):
+    pass
+
+
+class BECConfigError(Exception):
+    pass
+
+
+def retry_once(fcn):
+    """Decorator to rerun a function in case a CommunicationError was raised. This may happen if the buffer was not empty."""
+
+    @functools.wraps(fcn)
+    def wrapper(self, *args, **kwargs):
+        try:
+            val = fcn(self, *args, **kwargs)
+        except (RtCommunicationError, RtError):
+            val = fcn(self, *args, **kwargs)
+        return val
+
+    return wrapper
+
+
+class RtSignalBase(SocketSignal):
+    def __init__(self, signal_name, **kwargs):
+        self.signal_name = signal_name
+        super().__init__(**kwargs)
+        self.controller = self.parent.controller
+        self.sock = self.parent.controller.sock
+
+
+class RtSignalRO(RtSignalBase):
+    def __init__(self, signal_name, **kwargs):
+        super().__init__(signal_name, **kwargs)
+        self._metadata["write_access"] = False
+
+    def _socket_set(self, val):
+        raise ReadOnlyError("Read-only signals cannot be set")
+
+
+class RtReadbackSignal(RtSignalRO):
+    @retry_once
+    @threadlocked
+    def _socket_get(self) -> float:
+        """Get command for the readback signal
+
+        Returns:
+        float: Readback value after adjusting for sign and motor resolution.
+        """
+        return_table = (self.controller.socket_put_and_receive("J4")).split(",")
+        if self.parent.axis_Id_numeric == 0:
+            readback_index = 2
+        elif self.parent.axis_Id_numeric == 1:
+            readback_index = 1
+        else:
+            raise RtError("Currently, only two axes are supported.")
+
+        current_pos = float(return_table[readback_index])
+
+        current_pos *= self.parent.sign
+        return current_pos
+
+
+class RtSetpointSignal(RtSignalBase):
+    setpoint = 0
+
+    def _socket_get(self) -> float:
+        """Get command for receiving the setpoint / target value.
+        The value is not pulled from the controller but instead just the last setpoint used.
+
+        Returns:
+            float: setpoint / target value
+        """
+        return self.setpoint
+
+    @retry_once
+    @threadlocked
+    def _socket_set(self, val: float) -> None:
+        """Set a new target value / setpoint value. Before submission, the target value is adjusted for the axis' sign.
+        Furthermore, it is ensured that all axes are referenced before a new setpoint is submitted.
+
+        Args:
+            val (float): Target value / setpoint value
+
+        Raises:
+            RtError: Raised if interferometer feedback is disabled.
+
+        """
+        interferometer_feedback_not_running = int(
+            (self.controller.socket_put_and_receive("J2")).split(",")[0]
+        )
+        if interferometer_feedback_not_running != 0:
+            raise RtError(
+                "The interferometer feedback is not running. Either it is turned off or and interferometer error occured."
+            )
+        self.set_with_feedback_disabled(val)
+
+    def set_with_feedback_disabled(self, val):
+        target_val = val * self.parent.sign
+        self.setpoint = target_val
+        self.controller.socket_put(f"pa{self.parent.axis_Id_numeric},{target_val:.4f}")
+
+
+class RtMotorIsMoving(RtSignalRO):
+    def _socket_get(self):
+        return self.controller.is_axis_moving(self.parent.axis_Id_numeric)
+
+    def get(self):
+        val = super().get()
+        if val is not None:
+            self._run_subs(sub_type=self.SUB_VALUE, value=val, timestamp=time.time())
+        return val
+
+
+class RtFeedbackRunning(RtSignalRO):
+    @threadlocked
+    def _socket_get(self):
+        if int((self.controller.socket_put_and_receive("J2")).split(",")[0]) == 0:
+            return 1
+        else:
+            return 0

csaxs_bec/devices/rt_lamni/rt_ophyd.py

@@ -1,817 +0,0 @@
-import functools
-import threading
-import time
-from typing import List
-
-import numpy as np
-from bec_lib import MessageEndpoints, bec_logger, messages
-from ophyd import Component as Cpt
-from ophyd import Device, PositionerBase, Signal
-from ophyd.status import wait as status_wait
-from ophyd.utils import LimitError, ReadOnlyError
-from ophyd_devices.utils.controller import Controller, threadlocked
-from ophyd_devices.utils.socket import SocketIO, SocketSignal, raise_if_disconnected
-
-logger = bec_logger.logger
-
-
-class RtCommunicationError(Exception):
-    pass
-
-
-class RtError(Exception):
-    pass
-
-
-class BECConfigError(Exception):
-    pass
-
-
-def retry_once(fcn):
-    """Decorator to rerun a function in case a CommunicationError was raised. This may happen if the buffer was not empty."""
-
-    @functools.wraps(fcn)
-    def wrapper(self, *args, **kwargs):
-        try:
-            val = fcn(self, *args, **kwargs)
-        except (RtCommunicationError, RtError):
-            val = fcn(self, *args, **kwargs)
-        return val
-
-    return wrapper
-
-
-class RtController(Controller):
-    _axes_per_controller = 3
-    USER_ACCESS = [
-        "socket_put_and_receive",
-        "set_rotation_angle",
-        "feedback_disable",
-        "feedback_enable_without_reset",
-        "feedback_disable_and_even_reset_lamni_angle_interferometer",
-        "feedback_enable_with_reset",
-        "add_pos_to_scan",
-        "clear_trajectory_generator",
-        "_set_axis_velocity",
-        "_set_axis_velocity_maximum_speed",
-        "_position_sampling_single_read",
-        "_position_sampling_single_reset_and_start_sampling",
-    ]
-
-    def on(self, controller_num=0) -> None:
-        """Open a new socket connection to the controller"""
-        # if not self.connected:
-        #     try:
-        #         self.sock.open()
-        #         # discuss - after disconnect takes a while for the server to be ready again
-        #         max_retries = 10
-        #         tries = 0
-        #         while not self.connected:
-        #             try:
-        #                 welcome_message = self.sock.receive()
-        #                 self.connected = True
-        #             except ConnectionResetError as conn_reset:
-        #                 if tries > max_retries:
-        #                     raise conn_reset
-        #                 tries += 1
-        #                 time.sleep(2)
-        #     except ConnectionRefusedError as conn_error:
-        #         logger.error("Failed to open a connection to RTLamNI.")
-        #         raise RtCommunicationError from conn_error
-
-        # else:
-        #     logger.info("The connection has already been established.")
-        #     # warnings.warn(f"The connection has already been established.", stacklevel=2)
-        super().on()
-        # self._update_flyer_device_info()
-
-    def set_axis(self, axis: Device, axis_nr: int) -> None:
-        """Assign an axis to a device instance.
-
-        Args:
-            axis (Device): Device instance (e.g. GalilMotor)
-            axis_nr (int): Controller axis number
-
-        """
-        self._axis[axis_nr] = axis
-
-    @threadlocked
-    def socket_put(self, val: str) -> None:
-        self.sock.put(f"{val}\n".encode())
-
-    @threadlocked
-    def socket_get(self) -> str:
-        return self.sock.receive().decode()
-
-    @retry_once
-    @threadlocked
-    def socket_put_and_receive(self, val: str, remove_trailing_chars=True) -> str:
-        self.socket_put(val)
-        if remove_trailing_chars:
-            return self._remove_trailing_characters(self.sock.receive().decode())
-        return self.socket_get()
-
-    def is_axis_moving(self, axis_Id) -> bool:
-        # this checks that axis is on target
-        axis_is_on_target = bool(float(self.socket_put_and_receive(f"o")))
-        return not axis_is_on_target
-
-    #    def is_thread_active(self, thread_id: int) -> bool:
-    #        val = float(self.socket_put_and_receive(f"MG_XQ{thread_id}"))
-    #        if val == -1:
-    #            return False
-    #        return True
-
-    def _remove_trailing_characters(self, var) -> str:
-        if len(var) > 1:
-            return var.split("\r\n")[0]
-        return var
-
-    @threadlocked
-    def set_rotation_angle(self, val: float):
-        self.socket_put(f"a{(val-300+30.538)/180*np.pi}")
-
-    @threadlocked
-    def stop_all_axes(self):
-        self.socket_put("sc")
-
-    @threadlocked
-    def feedback_disable(self):
-        self.socket_put("J0")
-        logger.info("LamNI Feedback disabled.")
-        self.set_device_enabled("lsamx", True)
-        self.set_device_enabled("lsamy", True)
-        self.set_device_enabled("loptx", True)
-        self.set_device_enabled("lopty", True)
-        self.set_device_enabled("loptz", True)
-
-    @threadlocked
-    def _set_axis_velocity(self, um_per_s):
-        self.socket_put(f"V{um_per_s}")
-
-    @threadlocked
-    def _set_axis_velocity_maximum_speed(self):
-        self.socket_put(f"V0")
-
-    # for developement of soft continuous scanning
-    @threadlocked
-    def _position_sampling_single_reset_and_start_sampling(self):
-        self.socket_put(f"Ss")
-
-    @threadlocked
-    def _position_sampling_single_read(self):
-        (number_of_samples, sum0, sum0_2, sum1, sum1_2, sum2, sum2_2) = self.socket_put_and_receive(
-            f"Sr"
-        ).split(",")
-        avg_x = float(sum1) / int(number_of_samples)
-        avg_y = float(sum0) / int(number_of_samples)
-        stdev_x = np.sqrt(
-            float(sum1_2) / int(number_of_samples)
-            - np.power(float(sum1) / int(number_of_samples), 2)
-        )
-        stdev_y = np.sqrt(
-            float(sum0_2) / int(number_of_samples)
-            - np.power(float(sum0) / int(number_of_samples), 2)
-        )
-        return (avg_x, avg_y, stdev_x, stdev_y)
-
-    @threadlocked
-    def feedback_enable_without_reset(self):
-        # read current interferometer position
-        return_table = (self.socket_put_and_receive(f"J4")).split(",")
-        x_curr = float(return_table[2])
-        y_curr = float(return_table[1])
-        # set these as closed loop target position
-        self.socket_put(f"pa0,{x_curr:.4f}")
-        self.socket_put(f"pa1,{y_curr:.4f}")
-        self.get_device_manager().devices.rtx.obj.user_setpoint.set_with_feedback_disabled(x_curr)
-        self.get_device_manager().devices.rty.obj.user_setpoint.set_with_feedback_disabled(y_curr)
-        self.socket_put("J5")
-        logger.info("LamNI Feedback enabled (without reset).")
-        self.set_device_enabled("lsamx", False)
-        self.set_device_enabled("lsamy", False)
-        self.set_device_enabled("loptx", False)
-        self.set_device_enabled("lopty", False)
-        self.set_device_enabled("loptz", False)
-
-    @threadlocked
-    def feedback_disable_and_even_reset_lamni_angle_interferometer(self):
-        self.socket_put("J6")
-        logger.info("LamNI Feedback disabled including the angular interferometer.")
-        self.set_device_enabled("lsamx", True)
-        self.set_device_enabled("lsamy", True)
-        self.set_device_enabled("loptx", True)
-        self.set_device_enabled("lopty", True)
-        self.set_device_enabled("loptz", True)
-
-    def get_device_manager(self):
-        for axis in self._axis:
-            if hasattr(axis, "device_manager") and axis.device_manager:
-                return axis.device_manager
-        raise BECConfigError("Could not access the device_manager")
-
-    def get_axis_by_name(self, name):
-        for axis in self._axis:
-            if axis:
-                if axis.name == name:
-                    return axis
-        raise RuntimeError(f"Could not find an axis with name {name}")
-
-    @threadlocked
-    def clear_trajectory_generator(self):
-        self.socket_put("sc")
-        logger.info("LamNI scan stopped and deleted, moving to start position")
-
-    def add_pos_to_scan(self, positions) -> None:
-        def send_positions(parent, positions):
-            parent._min_scan_buffer_reached = False
-            for pos_index, pos in enumerate(positions):
-                parent.socket_put_and_receive(f"s{pos[0]},{pos[1]},0")
-                if pos_index > 100:
-                    parent._min_scan_buffer_reached = True
-            parent._min_scan_buffer_reached = True
-
-        threading.Thread(target=send_positions, args=(self, positions), daemon=True).start()
-
-    @retry_once
-    @threadlocked
-    def get_scan_status(self):
-        return_table = (self.socket_put_and_receive(f"sr")).split(",")
-        if len(return_table) != 3:
-            raise RtCommunicationError(
-                f"Expected to receive 3 return values. Instead received {return_table}"
-            )
-        mode = int(return_table[0])
-        # mode 0: direct positioning
-        # mode 1: running internal timer (not tested/used anymore)
-        # mode 2: rt point scan running
-        # mode 3: rt point scan starting
-        # mode 5/6: rt continuous scanning (not available in LamNI)
-        number_of_positions_planned = int(return_table[1])
-        current_position_in_scan = int(return_table[2])
-        return (mode, number_of_positions_planned, current_position_in_scan)
-
-    @threadlocked
-    def start_scan(self):
-        interferometer_feedback_not_running = int((self.socket_put_and_receive("J2")).split(",")[0])
-        if interferometer_feedback_not_running == 1:
-            logger.error(
-                "Cannot start scan because feedback loop is not running or there is an interferometer error."
-            )
-            raise RtError(
-                "Cannot start scan because feedback loop is not running or there is an interferometer error."
-            )
-            # here exception
-        (mode, number_of_positions_planned, current_position_in_scan) = self.get_scan_status()
-
-        if number_of_positions_planned == 0:
-            logger.error("Cannot start scan because no target positions are planned.")
-            raise RtError("Cannot start scan because no target positions are planned.")
-            # hier exception
-        # start a point-by-point scan (for cont scan in flomni it would be "sa")
-        self.socket_put_and_receive("sd")
-
-    def start_readout(self):
-        readout = threading.Thread(target=self.read_positions_from_sampler)
-        readout.start()
-
-    def _update_flyer_device_info(self):
-        flyer_info = self._get_flyer_device_info()
-        self.get_device_manager().connector.set(
-            MessageEndpoints.device_info("rt_scan"),
-            messages.DeviceInfoMessage(device="rt_scan", info=flyer_info).dumps(),
-        )
-
-    def _get_flyer_device_info(self) -> dict:
-        return {
-            "device_name": self.name,
-            "device_attr_name": getattr(self, "attr_name", ""),
-            "device_dotted_name": getattr(self, "dotted_name", ""),
-            "device_info": {
-                "device_base_class": "ophydobject",
-                "signals": [],
-                "hints": {"fields": ["average_x_st_fzp", "average_y_st_fzp"]},
-                "describe": {},
-                "describe_configuration": {},
-                "sub_devices": [],
-                "custom_user_access": [],
-            },
-        }
-
-    def kickoff(self, metadata):
-        self.readout_metadata = metadata
-        while not self._min_scan_buffer_reached:
-            time.sleep(0.001)
-        self.start_scan()
-        time.sleep(0.1)
-        self.start_readout()
-
-    def _get_signals_from_table(self, return_table) -> dict:
-        self.average_stdeviations_x_st_fzp += float(return_table[5])
-        self.average_stdeviations_y_st_fzp += float(return_table[8])
-        self.average_lamni_angle += float(return_table[19])
-        signals = {
-            "target_x": {"value": float(return_table[3])},
-            "average_x_st_fzp": {"value": float(return_table[4])},
-            "stdev_x_st_fzp": {"value": float(return_table[5])},
-            "target_y": {"value": float(return_table[6])},
-            "average_y_st_fzp": {"value": float(return_table[7])},
-            "stdev_y_st_fzp": {"value": float(return_table[8])},
-            "average_cap1": {"value": float(return_table[9])},
-            "stdev_cap1": {"value": float(return_table[10])},
-            "average_cap2": {"value": float(return_table[11])},
-            "stdev_cap2": {"value": float(return_table[12])},
-            "average_cap3": {"value": float(return_table[13])},
-            "stdev_cap3": {"value": float(return_table[14])},
-            "average_cap4": {"value": float(return_table[15])},
-            "stdev_cap4": {"value": float(return_table[16])},
-            "average_cap5": {"value": float(return_table[17])},
-            "stdev_cap5": {"value": float(return_table[18])},
-            "average_angle_interf_ST": {"value": float(return_table[19])},
-            "stdev_angle_interf_ST": {"value": float(return_table[20])},
-            "average_stdeviations_x_st_fzp": {
-                "value": self.average_stdeviations_x_st_fzp / (int(return_table[0]) + 1)
-            },
-            "average_stdeviations_y_st_fzp": {
-                "value": self.average_stdeviations_y_st_fzp / (int(return_table[0]) + 1)
-            },
-            "average_lamni_angle": {"value": self.average_lamni_angle / (int(return_table[0]) + 1)},
-        }
-        return signals
-
-    def read_positions_from_sampler(self):
-        # this was for reading after the scan completed
-        number_of_samples_to_read = 1  # self.get_scan_status()[1]  #number of valid samples, will be updated upon first data read
-
-        read_counter = 0
-        previous_point_in_scan = 0
-
-        self.average_stdeviations_x_st_fzp = 0
-        self.average_stdeviations_y_st_fzp = 0
-        self.average_lamni_angle = 0
-
-        mode, number_of_positions_planned, current_position_in_scan = self.get_scan_status()
-
-        # if not (mode==2 or mode==3):
-        #    error
-        self.get_device_manager().connector.set(
-            MessageEndpoints.device_status("rt_scan"),
-            messages.DeviceStatusMessage(
-                device="rt_scan", status=1, metadata=self.readout_metadata
-            ).dumps(),
-        )
-        # while scan is running
-        while mode > 0:
-            # logger.info(f"Current scan position {current_position_in_scan} out of {number_of_positions_planned}")
-            mode, number_of_positions_planned, current_position_in_scan = self.get_scan_status()
-            time.sleep(0.01)
-            if current_position_in_scan > 5:
-                while current_position_in_scan > read_counter + 1:
-                    return_table = (self.socket_put_and_receive(f"r{read_counter}")).split(",")
-                    # logger.info(f"{return_table}")
-                    logger.info(f"Read {read_counter} out of {number_of_positions_planned}")
-
-                    read_counter = read_counter + 1
-
-                    signals = self._get_signals_from_table(return_table)
-
-                    self.publish_device_data(signals=signals, point_id=int(return_table[0]))
-
-        time.sleep(0.05)
-
-        # read the last samples even though scan is finished already
-        while number_of_positions_planned > read_counter:
-            return_table = (self.socket_put_and_receive(f"r{read_counter}")).split(",")
-            logger.info(f"Read {read_counter} out of {number_of_positions_planned}")
-            # logger.info(f"{return_table}")
-            read_counter = read_counter + 1
-
-            signals = self._get_signals_from_table(return_table)
-            self.publish_device_data(signals=signals, point_id=int(return_table[0]))
-
-        self.get_device_manager().connector.set(
-            MessageEndpoints.device_status("rt_scan"),
-            messages.DeviceStatusMessage(
-                device="rt_scan", status=0, metadata=self.readout_metadata
-            ).dumps(),
-        )
-
-        logger.info(
-            f"LamNI statistics: Average of all standard deviations: x {self.average_stdeviations_x_st_fzp/number_of_samples_to_read}, y {self.average_stdeviations_y_st_fzp/number_of_samples_to_read}, angle {self.average_lamni_angle/number_of_samples_to_read}."
-        )
-
-    def publish_device_data(self, signals, point_id):
-        self.get_device_manager().connector.set_and_publish(
-            MessageEndpoints.device_read("rt_lamni"),
-            messages.DeviceMessage(
-                signals=signals, metadata={"point_id": point_id, **self.readout_metadata}
-            ).dumps(),
-        )
-
-    def feedback_status_angle_lamni(self) -> bool:
-        return_table = (self.socket_put_and_receive(f"J7")).split(",")
-        logger.debug(
-            f"LamNI angle interferomter status {bool(return_table[0])}, position {float(return_table[1])}, signal {float(return_table[2])}"
-        )
-        return bool(return_table[0])
-
-    def feedback_enable_with_reset(self):
-        if not self.feedback_status_angle_lamni():
-            self.feedback_disable_and_even_reset_lamni_angle_interferometer()
-            logger.info(f"LamNI resetting interferometer inclusive angular interferomter.")
-        else:
-            self.feedback_disable()
-            logger.info(
-                f"LamNI resetting interferomter except angular interferometer which is already running."
-            )
-
-        # set these as closed loop target position
-
-        self.socket_put(f"pa0,0")
-        self.get_axis_by_name("rtx").user_setpoint.setpoint = 0
-        self.socket_put(f"pa1,0")
-        self.get_axis_by_name("rty").user_setpoint.setpoint = 0
-        self.socket_put(
-            f"pa2,0"
-        )  # we set all three outputs of the traj. gen. although in LamNI case only 0,1 are used
-        self.clear_trajectory_generator()
-
-        self.get_device_manager().devices.lsamrot.obj.move(0, wait=True)
-
-        galil_controller_rt_status = (
-            self.get_device_manager().devices.lsamx.obj.controller.lgalil_is_air_off_and_orchestra_enabled()
-        )
-
-        if galil_controller_rt_status == 0:
-            logger.error(
-                "Cannot enable feedback. The small rotation air is on and/or orchestra disabled by the motor controller."
-            )
-            raise RtError(
-                "Cannot enable feedback. The small rotation air is on and/or orchestra disabled by the motor controller."
-            )
-
-        time.sleep(0.03)
-
-        lsamx_user_params = self.get_device_manager().devices.lsamx.user_parameter
-        if lsamx_user_params is None or lsamx_user_params.get("center") is None:
-            raise RuntimeError("lsamx center is not defined")
-        lsamy_user_params = self.get_device_manager().devices.lsamy.user_parameter
-        if lsamy_user_params is None or lsamy_user_params.get("center") is None:
-            raise RuntimeError("lsamy center is not defined")
-        lsamx_center = lsamx_user_params.get("center")
-        lsamy_center = lsamy_user_params.get("center")
-        self.get_device_manager().devices.lsamx.obj.move(lsamx_center, wait=True)
-        self.get_device_manager().devices.lsamy.obj.move(lsamy_center, wait=True)
-        self.socket_put("J1")
-
-        _waitforfeedbackctr = 0
-
-        interferometer_feedback_not_running = int((self.socket_put_and_receive("J2")).split(",")[0])
-
-        while interferometer_feedback_not_running == 1 and _waitforfeedbackctr < 100:
-            time.sleep(0.01)
-            _waitforfeedbackctr = _waitforfeedbackctr + 1
-            interferometer_feedback_not_running = int(
-                (self.socket_put_and_receive("J2")).split(",")[0]
-            )
-
-        self.set_device_enabled("lsamx", False)
-        self.set_device_enabled("lsamy", False)
-        self.set_device_enabled("loptx", False)
-        self.set_device_enabled("lopty", False)
-        self.set_device_enabled("loptz", False)
-
-        if interferometer_feedback_not_running == 1:
-            logger.error(
-                "Cannot start scan because feedback loop is not running or there is an interferometer error."
-            )
-            raise RtError(
-                "Cannot start scan because feedback loop is not running or there is an interferometer error."
-            )
-
-        time.sleep(0.01)
-
-        # ptychography_alignment_done = 0
-
-    def set_device_enabled(self, device_name: str, enabled: bool) -> None:
-        """enable / disable a device"""
-        if device_name not in self.get_device_manager().devices:
-            logger.warning(
-                f"Device {device_name} is not configured and cannot be enabled/disabled."
-            )
-            return
-        self.get_device_manager().devices[device_name].read_only = not enabled
-
-
-class RtSignalBase(SocketSignal):
-    def __init__(self, signal_name, **kwargs):
-        self.signal_name = signal_name
-        super().__init__(**kwargs)
-        self.controller = self.parent.controller
-        self.sock = self.parent.controller.sock
-
-
-class RtSignalRO(RtSignalBase):
-    def __init__(self, signal_name, **kwargs):
-        super().__init__(signal_name, **kwargs)
-        self._metadata["write_access"] = False
-
-    def _socket_set(self, val):
-        raise ReadOnlyError("Read-only signals cannot be set")
-
-
-class RtReadbackSignal(RtSignalRO):
-    @retry_once
-    @threadlocked
-    def _socket_get(self) -> float:
-        """Get command for the readback signal
-
-        Returns:
-        float: Readback value after adjusting for sign and motor resolution.
-        """
-        return_table = (self.controller.socket_put_and_receive(f"J4")).split(",")
-        print(return_table)
-        if self.parent.axis_Id_numeric == 0:
-            readback_index = 2
-        elif self.parent.axis_Id_numeric == 1:
-            readback_index = 1
-        else:
-            raise RtError("Currently, only two axes are supported.")
-
-        current_pos = float(return_table[readback_index])
-
-        current_pos *= self.parent.sign
-        return current_pos
-
-
-class RtSetpointSignal(RtSignalBase):
-    setpoint = 0
-
-    def _socket_get(self) -> float:
-        """Get command for receiving the setpoint / target value.
-        The value is not pulled from the controller but instead just the last setpoint used.
-
-        Returns:
-            float: setpoint / target value
-        """
-        return self.setpoint
-
-    @retry_once
-    @threadlocked
-    def _socket_set(self, val: float) -> None:
-        """Set a new target value / setpoint value. Before submission, the target value is adjusted for the axis' sign.
-        Furthermore, it is ensured that all axes are referenced before a new setpoint is submitted.
-
-        Args:
-            val (float): Target value / setpoint value
-
-        Raises:
-            RtError: Raised if interferometer feedback is disabled.
-
-        """
-        interferometer_feedback_not_running = int(
-            (self.controller.socket_put_and_receive("J2")).split(",")[0]
-        )
-        if interferometer_feedback_not_running != 0:
-            raise RtError(
-                "The interferometer feedback is not running. Either it is turned off or and interferometer error occured."
-            )
-        self.set_with_feedback_disabled(val)
-
-    def set_with_feedback_disabled(self, val):
-        target_val = val * self.parent.sign
-        self.setpoint = target_val
-        self.controller.socket_put(f"pa{self.parent.axis_Id_numeric},{target_val:.4f}")
-
-
-class RtMotorIsMoving(RtSignalRO):
-    def _socket_get(self):
-        return self.controller.is_axis_moving(self.parent.axis_Id_numeric)
-
-    def get(self):
-        val = super().get()
-        if val is not None:
-            self._run_subs(sub_type=self.SUB_VALUE, value=val, timestamp=time.time())
-        return val
-
-
-class RtFeedbackRunning(RtSignalRO):
-    @threadlocked
-    def _socket_get(self):
-        if int((self.controller.socket_put_and_receive("J2")).split(",")[0]) == 0:
-            return 1
-        else:
-            return 0
-
-
-class RtMotor(Device, PositionerBase):
-    USER_ACCESS = ["controller"]
-    readback = Cpt(RtReadbackSignal, signal_name="readback", kind="hinted")
-    user_setpoint = Cpt(RtSetpointSignal, signal_name="setpoint")
-
-    motor_is_moving = Cpt(RtMotorIsMoving, signal_name="motor_is_moving", kind="normal")
-    high_limit_travel = Cpt(Signal, value=0, kind="omitted")
-    low_limit_travel = Cpt(Signal, value=0, kind="omitted")
-
-    SUB_READBACK = "readback"
-    SUB_CONNECTION_CHANGE = "connection_change"
-    _default_sub = SUB_READBACK
-
-    def __init__(
-        self,
-        axis_Id,
-        prefix="",
-        *,
-        name,
-        kind=None,
-        read_attrs=None,
-        configuration_attrs=None,
-        parent=None,
-        host="mpc2680.psi.ch",
-        port=3333,
-        sign=1,
-        socket_cls=SocketIO,
-        device_manager=None,
-        limits=None,
-        **kwargs,
-    ):
-        self.axis_Id = axis_Id
-        self.sign = sign
-        self.controller = RtController(socket=socket_cls(host=host, port=port))
-        self.controller.set_axis(axis=self, axis_nr=self.axis_Id_numeric)
-        self.device_manager = device_manager
-        self.tolerance = kwargs.pop("tolerance", 0.5)
-
-        super().__init__(
-            prefix,
-            name=name,
-            kind=kind,
-            read_attrs=read_attrs,
-            configuration_attrs=configuration_attrs,
-            parent=parent,
-            **kwargs,
-        )
-        self.readback.name = self.name
-        self.controller.subscribe(
-            self._update_connection_state, event_type=self.SUB_CONNECTION_CHANGE
-        )
-        self._update_connection_state()
-
-        # self.readback.subscribe(self._forward_readback, event_type=self.readback.SUB_VALUE)
-        if limits is not None:
-            assert len(limits) == 2
-            self.low_limit_travel.put(limits[0])
-            self.high_limit_travel.put(limits[1])
-
-    @property
-    def limits(self):
-        return (self.low_limit_travel.get(), self.high_limit_travel.get())
-
-    @property
-    def low_limit(self):
-        return self.limits[0]
-
-    @property
-    def high_limit(self):
-        return self.limits[1]
-
-    def check_value(self, pos):
-        """Check that the position is within the soft limits"""
-        low_limit, high_limit = self.limits
-
-        if low_limit < high_limit and not (low_limit <= pos <= high_limit):
-            raise LimitError(f"position={pos} not within limits {self.limits}")
-
-    def _update_connection_state(self, **kwargs):
-        for walk in self.walk_signals():
-            walk.item._metadata["connected"] = self.controller.connected
-
-    def _forward_readback(self, **kwargs):
-        kwargs.pop("sub_type")
-        self._run_subs(sub_type="readback", **kwargs)
-
-    @raise_if_disconnected
-    def move(self, position, wait=True, **kwargs):
-        """Move to a specified position, optionally waiting for motion to
-        complete.
-
-        Parameters
-        ----------
-        position
-            Position to move to
-        moved_cb : callable
-            Call this callback when movement has finished. This callback must
-            accept one keyword argument: 'obj' which will be set to this
-            positioner instance.
-        timeout : float, optional
-            Maximum time to wait for the motion. If None, the default timeout
-            for this positioner is used.
-
-        Returns
-        -------
-        status : MoveStatus
-
-        Raises
-        ------
-        TimeoutError
-            When motion takes longer than `timeout`
-        ValueError
-            On invalid positions
-        RuntimeError
-            If motion fails other than timing out
-        """
-        self._started_moving = False
-        timeout = kwargs.pop("timeout", 100)
-        status = super().move(position, timeout=timeout, **kwargs)
-        self.user_setpoint.put(position, wait=False)
-
-        def move_and_finish():
-            while self.motor_is_moving.get():
-                print("motor is moving")
-                val = self.readback.read()
-                self._run_subs(sub_type=self.SUB_READBACK, value=val, timestamp=time.time())
-                time.sleep(0.01)
-            print("Move finished")
-            self._done_moving()
-
-        threading.Thread(target=move_and_finish, daemon=True).start()
-        try:
-            if wait:
-                status_wait(status)
-        except KeyboardInterrupt:
-            self.stop()
-            raise
-
-        return status
-
-    @property
-    def axis_Id(self):
-        return self._axis_Id_alpha
-
-    @axis_Id.setter
-    def axis_Id(self, val):
-        if isinstance(val, str):
-            if len(val) != 1:
-                raise ValueError(f"Only single-character axis_Ids are supported.")
-            self._axis_Id_alpha = val
-            self._axis_Id_numeric = ord(val.lower()) - 97
-        else:
-            raise TypeError(f"Expected value of type str but received {type(val)}")
-
-    @property
-    def axis_Id_numeric(self):
-        return self._axis_Id_numeric
-
-    @axis_Id_numeric.setter
-    def axis_Id_numeric(self, val):
-        if isinstance(val, int):
-            if val > 26:
-                raise ValueError(f"Numeric value exceeds supported range.")
-            self._axis_Id_alpha = val
-            self._axis_Id_numeric = (chr(val + 97)).capitalize()
-        else:
-            raise TypeError(f"Expected value of type int but received {type(val)}")
-
-    def kickoff(self, metadata, **kwargs) -> None:
-        self.controller.kickoff(metadata)
-
-    @property
-    def egu(self):
-        """The engineering units (EGU) for positions"""
-        return "um"
-
-    # how is this used later?
-
-    def stage(self) -> List[object]:
-        return super().stage()
-
-    def unstage(self) -> List[object]:
-        return super().unstage()
-
-    def stop(self, *, success=False):
-        self.controller.stop_all_axes()
-        return super().stop(success=success)
-
-
-if __name__ == "__main__":
-    logging.basicConfig(level=logging.DEBUG)
-
-    mock = False
-    if not mock:
-        rty = RtLamniMotor("B", name="rty", host="mpc2680.psi.ch", port=3333, sign=1)
-        rty.stage()
-        status = rty.move(0, wait=True)
-        status = rty.move(10, wait=True)
-        rty.read()
-
-        rty.get()
-        rty.describe()
-
-        rty.unstage()
-    else:
-        from ophyd_devices.utils.socket import SocketMock
-
-        rtx = RtLamniMotor("A", name="rtx", host="mpc2680.psi.ch", port=3333, socket_cls=SocketMock)
-        rty = RtLamniMotor("B", name="rty", host="mpc2680.psi.ch", port=3333, socket_cls=SocketMock)
-        rtx.stage()
-        # rty.stage()

csaxs_bec/devices/smaract/smaract_controller.py

@@ -80,6 +80,8 @@ class SmaractController(Controller):
         "describe",
         "axis_is_referenced",
         "all_axes_referenced",
+        "set_closed_loop_move_speed",
+        "is_axis_moving",
     ]
 
     def __init__(
@@ -111,10 +113,6 @@ class SmaractController(Controller):
     def socket_put(self, val: str):
         self.sock.put(f":{val}\n".encode())
 
-    @threadlocked
-    def socket_get(self):
-        return self.sock.receive().decode()
-
     @threadlocked
     def socket_put_and_receive(
         self, val: str, remove_trailing_chars=True, check_for_errors=True, raise_if_not_status=False

csaxs_bec/devices/tests_utils/utils.py

@@ -0,0 +1,9 @@
+def patch_dual_pvs(device):
+    device.wait_for_connection(all_signals=True)
+    for walk in device.walk_signals():
+        if not hasattr(walk.item, "_read_pv"):
+            continue
+        if not hasattr(walk.item, "_write_pv"):
+            continue
+        if walk.item._read_pv.pvname.endswith("_RBV"):
+            walk.item._read_pv = walk.item._write_pv

csaxs_bec/file_writer/csaxs_nexus.py

@@ -5,7 +5,7 @@ from typing import TYPE_CHECKING, Any
 import numpy as np
 
 if TYPE_CHECKING:
-    from bec_lib import DeviceManagerBase
+    from bec_lib.devicemanager import DeviceManagerBase
     from bec_server.file_writer.file_writer import HDF5Storage
 
 

csaxs_bec/scans/LamNIFermatScan.py

@@ -23,7 +23,8 @@ but they are executed in a specific order:
 import time
 
 import numpy as np
-from bec_lib import MessageEndpoints, bec_logger
+from bec_lib import bec_logger
+from bec_lib.endpoints import MessageEndpoints
 from bec_server.scan_server.errors import ScanAbortion
 from bec_server.scan_server.scans import RequestBase, ScanArgType, ScanBase
 
@@ -109,9 +110,8 @@ class LamNIMixin:
             logger.info(
                 f"Compensating {[val/1000 for val in lamni_to_stage_coordinates(x_drift,y_drift)]}"
             )
-            yield from self.stubs.set_and_wait(
-                device=["lsamx", "lsamy"], positions=[move_x, move_y]
-            )
+            yield from self.stubs.set(device="lsamx", value=move_x)
+            yield from self.stubs.set(device="lsamy", value=move_y)
 
         time.sleep(0.01)
         rtx_current = yield from self.stubs.send_rpc_and_wait("rtx", "readback.get")
@@ -147,9 +147,9 @@ class LamNIMixin:
                 + lamni_to_stage_coordinates(x_drift, y_drift)[1] / 1000
                 + lamni_to_stage_coordinates(x_drift2, y_drift2)[1] / 1000
             )
-            yield from self.stubs.set_and_wait(
-                device=["lsamx", "lsamy"], positions=[move_x, move_y]
-            )
+            yield from self.stubs.set(device="lsamx", value=move_x)
+            yield from self.stubs.set(device="lsamy", value=move_y)
+
             time.sleep(0.01)
             rtx_current = yield from self.stubs.send_rpc_and_wait("rtx", "readback.get")
             rty_current = yield from self.stubs.send_rpc_and_wait("rty", "readback.get")
@@ -443,7 +443,7 @@ class LamNIFermatScan(ScanBase, LamNIMixin):
                     }
                 }
             )
-            yield from self.stubs.set_and_wait(device=["lsamrot"], positions=[angle])
+            yield from self.stubs.set(device="lsamrot", value=angle)
 
     def scan_core(self):
         if self.scan_type == "step":
@@ -456,7 +456,7 @@ class LamNIFermatScan(ScanBase, LamNIMixin):
             # scan ID before sending the message to the device server
             yield from self.stubs.kickoff(device="rtx")
             while True:
-                yield from self.stubs.read_and_wait(group="primary", wait_group="readout_primary")
+                yield from self.stubs.read(group="monitored")
                 msg = self.device_manager.connector.get(MessageEndpoints.device_status("rt_scan"))
                 if msg:
                     status = msg

csaxs_bec/scans/__init__.py

@@ -1,4 +1,6 @@
 from .flomni_fermat_scan import FlomniFermatScan
+from .jungfrau_joch_scan import JungfrauJochTestScan
 from .LamNIFermatScan import LamNIFermatScan, LamNIMoveToScanCenter
+from .omny_fermat_scan import OMNYFermatScan
 from .owis_grid import OwisGrid
 from .sgalil_grid import SgalilGrid

csaxs_bec/scans/flomni_fermat_scan.py

@@ -23,7 +23,8 @@ but they are executed in a specific order:
 import time
 
 import numpy as np
-from bec_lib import MessageEndpoints, bec_logger, messages
+from bec_lib import bec_logger, messages
+from bec_lib.endpoints import MessageEndpoints
 from bec_server.scan_server.errors import ScanAbortion
 from bec_server.scan_server.scans import SyncFlyScanBase
 
@@ -34,7 +35,7 @@ class FlomniFermatScan(SyncFlyScanBase):
     scan_name = "flomni_fermat_scan"
     scan_report_hint = "table"
     scan_type = "fly"
-    required_kwargs = ["fov_size", "exp_time", "step", "angle"]
+    required_kwargs = ["fovx", "fovy", "exp_time", "step", "angle"]
     arg_input = {}
     arg_bundle_size = {"bundle": len(arg_input), "min": None, "max": None}
 
@@ -58,8 +59,8 @@ class FlomniFermatScan(SyncFlyScanBase):
         Args:
             fovx(float) [um]: Fov in the piezo plane (i.e. piezo range). Max 200 um
             fovy(float) [um]: Fov in the piezo plane (i.e. piezo range). Max 100 um
-            cenx(float) [mm]: center position in x.
-            ceny(float) [mm]: center position in y.
+            cenx(float) [um]: center position in x.
+            ceny(float) [um]: center position in y.
             exp_time(float) [s]: exposure time
             step(float) [um]: stepsize
             zshift(float) [um]: shift in z
@@ -94,6 +95,7 @@ class FlomniFermatScan(SyncFlyScanBase):
         if self.zshift < -100:
             logger.warning("The zshift is smaller than -100 um. It will be limited to -100 um.")
             self.zshift = -100
+        self.flomni_rotation_status = None
 
     def initialize(self):
         self.scan_motors = []
@@ -114,13 +116,12 @@ class FlomniFermatScan(SyncFlyScanBase):
         shorten the movement time. In order to keep the last state, even if the
         server is restarted, the state is stored in a global variable in redis.
         """
-        producer = self.device_manager.producer
-        msg = producer.get(MessageEndpoints.global_vars("reverse_flomni_trajectory"))
+        msg = self.connector.get(MessageEndpoints.global_vars("reverse_flomni_trajectory"))
         if msg:
             val = msg.content.get("value", False)
         else:
             val = False
-        producer.set(
+        self.connector.set(
             MessageEndpoints.global_vars("reverse_flomni_trajectory"),
             messages.VariableMessage(value=(not val)),
         )
@@ -149,17 +150,17 @@ class FlomniFermatScan(SyncFlyScanBase):
         yield from self.stubs.send_rpc_and_wait("rty", "set", self.positions[0][1])
 
     def _prepare_setup_part2(self):
-        yield from self.stubs.wait(wait_type="move", device="fsamroy", wait_group="flomni_rotation")
-        yield from self.stubs.set(
-            device="rtx", value=self.positions[0][0], wait_group="prepare_setup_part2"
-        )
-        yield from self.stubs.set(
-            device="rtz", value=self.positions[0][2], wait_group="prepare_setup_part2"
-        )
+        if self.flomni_rotation_status:
+            self.flomni_rotation_status.wait()
+
+        rtx_status = yield from self.stubs.set(device="rtx", value=self.positions[0][0], wait=False)
+        rtz_status = yield from self.stubs.set(device="rtz", value=self.positions[0][2], wait=False)
+
         yield from self.stubs.send_rpc_and_wait("rtx", "controller.laser_tracker_on")
-        yield from self.stubs.wait(
-            wait_type="move", device=["rtx", "rtz"], wait_group="prepare_setup_part2"
-        )
+
+        rtx_status.wait()
+        rtz_status.wait()
+
         yield from self._transfer_positions_to_flomni()
         yield from self.stubs.send_rpc_and_wait(
             "rtx", "controller.move_samx_to_scan_region", self.fovx, self.cenx
@@ -199,7 +200,9 @@ class FlomniFermatScan(SyncFlyScanBase):
                     }
                 }
             )
-            yield from self.stubs.set(device="fsamroy", value=angle, wait_group="flomni_rotation")
+            self.flomni_rotation_status = yield from self.stubs.set(
+                device="fsamroy", value=angle, wait=False
+            )
 
     def _transfer_positions_to_flomni(self):
         yield from self.stubs.send_rpc_and_wait(
@@ -275,8 +278,8 @@ class FlomniFermatScan(SyncFlyScanBase):
         # scan ID before sending the message to the device server
         yield from self.stubs.kickoff(device="rtx")
         while True:
-            yield from self.stubs.read_and_wait(group="primary", wait_group="readout_primary")
-            status = self.device_manager.producer.get(MessageEndpoints.device_status("rt_scan"))
+            yield from self.stubs.read(group="monitored")
+            status = self.connector.get(MessageEndpoints.device_status("rt_scan"))
             if status:
                 status_id = status.content.get("status", 1)
                 request_id = status.metadata.get("RID")
@@ -296,19 +299,7 @@ class FlomniFermatScan(SyncFlyScanBase):
         """return to the start position"""
         # in flomni, we need to move to the start position of the next scan
         if isinstance(self.positions, np.ndarray) and len(self.positions[-1]) == 3:
-            yield from self.stubs.set(
-                device="rtx", value=self.positions[-1][0], wait_group="scan_motor"
-            )
-            yield from self.stubs.set(
-                device="rty", value=self.positions[-1][1], wait_group="scan_motor"
-            )
-            yield from self.stubs.set(
-                device="rtz", value=self.positions[-1][2], wait_group="scan_motor"
-            )
-
-            yield from self.stubs.wait(
-                wait_type="move", device=["rtx", "rty", "rtz"], wait_group="scan_motor"
-            )
+            yield from self.stubs.set(device=["rtx", "rty", "rtz"], value=self.positions[-1])
             return
 
         logger.warning("No positions found to return to start")

csaxs_bec/scans/jungfrau_joch_scan.py

@@ -0,0 +1,58 @@
+""" Module with JungfrauJochTestScan class. """
+
+from bec_lib import bec_logger
+from bec_server.scan_server.scans import AsyncFlyScanBase, ScanAbortion
+
+logger = bec_logger.logger
+
+
+class JungfrauJochTestScan(AsyncFlyScanBase):
+    """Owis-based grid scan."""
+
+    scan_name = "jjf_test"
+    # scan_report_hint = "device_progress"
+    required_kwargs = ["points", "exp_time", "readout_time"]
+    arg_input = {}
+    arg_bundle_size = {"bundle": len(arg_input), "min": None, "max": None}
+    gui_config = {
+        "Acquisition Parameters": ["num_points", "cycles"],
+        "Exposure Parameters": ["exp_time", "readout_time"],
+    }
+
+    def __init__(
+        self, num_points: int, exp_time: float, readout_time: float, cycles: int = 1, **kwargs
+    ):
+        """
+        JungfrauJoch Test scan.
+
+        Args:
+            device (DeviceBase) : The device to be triggered, currently only for delaygenerator csaxs
+            num_points (int) : Number of points per burst
+            exp_time (float) : exposure time.
+            readout_time (float): readout time of detector
+            cycles (int) : number of cycles, default is 1
+
+        Example:
+           scans.jjf_test(points = 100, exp_time= 1e-3, readout_time=1e-3, cycles = 2)
+        """
+        if readout_time <= 0:
+            raise ScanAbortion(f"Readout time must be larger than 0, provided value {readout_time}")
+        super().__init__(exp_time=exp_time, readout_time=readout_time, **kwargs)
+        self.device = "ddg"
+        self.num_points = num_points
+        self.cycles = cycles
+        self.primary_readout_cycle = 0.2
+
+    def scan_core(self):
+        logger.info(f"Starting with Scan Core")
+        total_exposure = self.num_points * (self.exp_time + self.readout_time)
+        for i in range(self.cycles):
+            logger.info(f"Beginning cycle {i} of {self.cycles}")
+
+            status = yield from self.stubs.trigger(min_wait=total_exposure, wait=False)
+            yield from self.stubs.read(group="monitored", point_id=self.point_id, wait=True)
+            self.point_id += 1
+            status.wait()
+            logger.info(f"Finished cycle {i} of {self.cycles}")
+        logger.info(f"Finished scan")
+        self.num_pos = self.point_id