some mods omny doc
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@@ -44,28 +44,18 @@ Now that the sample is aligned, the tomographic measurement can be performed.
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1. `omny.tomo_scan_projection(angle)` perform a ptychographic scan at the rotation angle <angle>, e.g. at zero degrees. When happy with the scan parameters launch the tomographic measurement by `omny.tomo_scan()`.
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1. Before changing to the next sample sample, verify that all subtomograms were completely acquired using the `tomo_recons matlab` script.
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#### If something went wrong…
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### If something went wrong…
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Special cases:
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If something got stuck and no errors
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umv otransy 0
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_otransfer_gripper_to_park_z
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If the gripper fails (vertical movement)
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ctrl+C if it is stuck
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try moving up and down a bit (umvr otransy .5), potentially requires a ctrl+C again if stuck
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umv otransy -1.5
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_otransfer_gripper_to_park_z
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if this happened after a sample was mounted the storage might not be updated
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to do this manually
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GRIPPER
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otransfer_modify_samples 0 110 0/1
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SAMPLE STAGE 0 0 0/1
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otransfer_modify_samples
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For closing the shield at the parking station
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_otransfer_shield_close(1)
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If the gripper or another stage got stuck during transfer. Ctrl+c and then
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`umv(dev.otransy, -1.5)` followed by
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`omny._otransfer_gripper_to_park_z()`, which will move the gripper to its parking position.
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If the above fails for the vertical movement of the gripper _Ctrl+C_.
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Try moving up and down a bit `umvr(dev.otransy,0.5)`, `umvr(dev.otransy,-0.5)`, potentially requires a _ctrl+C_ again if stuck.
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Then, `umv(dev.ootransy,-1.5)` followed by
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`omny._otransfer_gripper_to_park_z()`, which will move the gripper to its parking position.
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Oeye out in xray in
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If this error happens after a sample was mounted or unmounted, it is important to chech that the sample storage is correct `omny.otransfer_storage()`.
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### Sample storage and transfer
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