some mods omny doc

This commit is contained in:
Mirko Holler
2024-11-29 17:28:28 +01:00
parent 9699b39a7e
commit 5f1449365d

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@@ -44,28 +44,18 @@ Now that the sample is aligned, the tomographic measurement can be performed.
1. `omny.tomo_scan_projection(angle)` perform a ptychographic scan at the rotation angle <angle>, e.g. at zero degrees. When happy with the scan parameters launch the tomographic measurement by `omny.tomo_scan()`.
1. Before changing to the next sample sample, verify that all subtomograms were completely acquired using the `tomo_recons matlab` script.
#### If something went wrong…
### If something went wrong…
Special cases:
If something got stuck and no errors
umv otransy 0
_otransfer_gripper_to_park_z
If the gripper fails (vertical movement)
ctrl+C if it is stuck
try moving up and down a bit (umvr otransy .5), potentially requires a ctrl+C again if stuck
umv otransy -1.5
_otransfer_gripper_to_park_z
if this happened after a sample was mounted the storage might not be updated
to do this manually
GRIPPER
otransfer_modify_samples 0 110 0/1
SAMPLE STAGE 0 0 0/1
otransfer_modify_samples
For closing the shield at the parking station
_otransfer_shield_close(1)
If the gripper or another stage got stuck during transfer. Ctrl+c and then
`umv(dev.otransy, -1.5)` followed by
`omny._otransfer_gripper_to_park_z()`, which will move the gripper to its parking position.
If the above fails for the vertical movement of the gripper _Ctrl+C_.
Try moving up and down a bit `umvr(dev.otransy,0.5)`, `umvr(dev.otransy,-0.5)`, potentially requires a _ctrl+C_ again if stuck.
Then, `umv(dev.ootransy,-1.5)` followed by
`omny._otransfer_gripper_to_park_z()`, which will move the gripper to its parking position.
Oeye out in xray in
If this error happens after a sample was mounted or unmounted, it is important to chech that the sample storage is correct `omny.otransfer_storage()`.
### Sample storage and transfer