feat: adapt detector classes and test for psi_detector_base refactoring
This commit is contained in:
@@ -5,8 +5,6 @@ import time
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from typing import Any
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import numpy as np
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from bec_lib import messages
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from bec_lib.endpoints import MessageEndpoints
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from bec_lib.logger import bec_logger
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from ophyd import ADComponent as ADCpt
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from ophyd import Device, EpicsSignal, EpicsSignalRO, EpicsSignalWithRBV
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@@ -42,6 +40,17 @@ class Eiger9MSetup(CustomDetectorMixin):
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self.std_client = None
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self._lock = threading.RLock()
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def on_init(self) -> None:
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"""Initialize the detector"""
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self.initialize_default_parameter()
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self.initialize_detector()
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self.initialize_detector_backend()
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def initialize_detector(self) -> None:
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"""Initialize detector"""
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self.stop_detector()
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self.parent.cam.trigger_mode.put(TriggerSource.GATING)
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def initialize_default_parameter(self) -> None:
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"""Set default parameters for Eiger9M detector"""
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self.update_readout_time()
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@@ -55,29 +64,19 @@ class Eiger9MSetup(CustomDetectorMixin):
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)
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self.parent.readout_time = max(readout_time, self.parent.MIN_READOUT)
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def initialize_detector(self) -> None:
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"""Initialize detector"""
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# Stops the detector
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self.stop_detector()
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# Sets the trigger source to GATING
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self.parent.set_trigger(TriggerSource.GATING)
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def initialize_detector_backend(self) -> None:
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"""Initialize detector backend"""
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# Std client
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self.std_client = StdDaqClient(url_base=self.std_rest_server_url)
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# Stop writer
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self.std_client.stop_writer()
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# Change e-account
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eacc = self.parent.scaninfo.username
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self.update_std_cfg("writer_user_id", int(eacc.strip(" e")))
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signal_conditions = [(lambda: self.std_client.get_status()["state"], "READY")]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions, timeout=self.parent.timeout, all_signals=True
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signal_conditions=signal_conditions,
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timeout=self.parent.TIMEOUT_FOR_SIGNALS,
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all_signals=True,
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):
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raise EigerTimeoutError(
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f"Std client not in READY state, returns: {self.std_client.get_status()}"
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@@ -98,7 +97,6 @@ class Eiger9MSetup(CustomDetectorMixin):
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"""
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# Load config from client and check old value
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cfg = self.std_client.get_config()
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old_value = cfg.get(cfg_key)
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if old_value is None:
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@@ -111,55 +109,23 @@ class Eiger9MSetup(CustomDetectorMixin):
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f" {type(old_value)}:{old_value}"
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)
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# Update config with new value and send back to client
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cfg.update({cfg_key: value})
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logger.debug(cfg)
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self.std_client.set_config(cfg)
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logger.debug(f"Updated std_daq config for key {cfg_key} from {old_value} to {value}")
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def stop_detector(self) -> None:
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"""Stop the detector"""
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# Stop detector
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self.parent.cam.acquire.put(0)
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# Check if detector returned in idle state
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signal_conditions = [
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(
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lambda: self.parent.cam.detector_state.read()[self.parent.cam.detector_state.name][
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"value"
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],
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DetectorState.IDLE,
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)
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]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.timeout - self.parent.timeout // 2,
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check_stopped=True,
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all_signals=False,
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):
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# Retry stop detector and wait for remaining time
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self.parent.cam.acquire.put(0)
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.timeout - self.parent.timeout // 2,
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check_stopped=True,
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all_signals=False,
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):
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raise EigerTimeoutError(
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f"Failed to stop detector, detector state {signal_conditions[0][0]}"
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)
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def stop_detector_backend(self) -> None:
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"""Close file writer"""
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self.std_client.stop_writer()
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def on_stage(self) -> None:
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"""Prepare the detector for scan"""
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self.prepare_detector()
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self.prepare_data_backend()
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self.publish_file_location(done=False)
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self.arm_acquisition()
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def prepare_detector(self) -> None:
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"""Prepare detector for scan"""
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self.set_detector_threshold()
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self.set_acquisition_params()
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self.parent.set_trigger(TriggerSource.GATING)
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self.parent.cam.trigger_mode.put(TriggerSource.GATING)
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def set_detector_threshold(self) -> None:
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"""
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@@ -167,25 +133,20 @@ class Eiger9MSetup(CustomDetectorMixin):
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The function sets the detector threshold automatically to 1/2 of the beam energy.
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"""
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# get current beam energy from device manageer
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mokev = self.parent.device_manager.devices.mokev.obj.read()[
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self.parent.device_manager.devices.mokev.name
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]["value"]
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factor = 1
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# Check if energies are eV or keV, assume keV as the default
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unit = getattr(self.parent.cam.threshold_energy, "units", None)
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if unit is not None and unit == "eV":
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factor = 1000
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# set energy on detector
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setpoint = int(mokev * factor)
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energy = self.parent.cam.beam_energy.read()[self.parent.cam.beam_energy.name]["value"]
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if setpoint != energy:
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self.parent.cam.beam_energy.set(setpoint)
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# set threshold on detector
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threshold = self.parent.cam.threshold_energy.read()[self.parent.cam.threshold_energy.name][
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"value"
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]
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@@ -194,14 +155,10 @@ class Eiger9MSetup(CustomDetectorMixin):
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def set_acquisition_params(self) -> None:
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"""Set acquisition parameters for the detector"""
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# Set number of images and frames (frames is for internal burst of detector)
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self.parent.cam.num_images.put(
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int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger)
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)
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self.parent.cam.num_frames.put(1)
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# Update the readout time of the detector
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self.update_readout_time()
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def prepare_data_backend(self) -> None:
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@@ -225,13 +182,12 @@ class Eiger9MSetup(CustomDetectorMixin):
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if self.std_client.get_status()["state"] == "READY":
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raise EigerTimeoutError(f"Timeout of start_writer_async with {exc}") from exc
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# Check status of std_daq
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signal_conditions = [
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(lambda: self.std_client.get_status()["acquisition"]["state"], "WAITING_IMAGES")
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]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.timeout,
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timeout=self.parent.TIMEOUT_FOR_SIGNALS,
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check_stopped=False,
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all_signals=True,
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):
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@@ -240,12 +196,58 @@ class Eiger9MSetup(CustomDetectorMixin):
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f" {self.std_client.get_status()}"
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)
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def on_unstage(self) -> None:
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"""Unstage the detector"""
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self.finished(timeout=self.parent.TIMEOUT_FOR_SIGNALS)
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self.publish_file_location(done=True, successful=True)
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def on_stop(self) -> None:
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"""Stop the detector"""
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self.stop_detector()
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self.stop_detector_backend()
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def stop_detector(self) -> None:
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"""Stop the detector"""
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# Stop detector
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self.parent.cam.acquire.put(0)
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signal_conditions = [
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(
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lambda: self.parent.cam.detector_state.read()[self.parent.cam.detector_state.name][
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"value"
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],
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DetectorState.IDLE,
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)
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]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.TIMEOUT_FOR_SIGNALS - self.parent.TIMEOUT_FOR_SIGNALS // 2,
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check_stopped=True,
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all_signals=False,
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):
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# Retry stop detector and wait for remaining time
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self.parent.cam.acquire.put(0)
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.TIMEOUT_FOR_SIGNALS - self.parent.TIMEOUT_FOR_SIGNALS // 2,
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check_stopped=True,
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all_signals=False,
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):
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raise EigerTimeoutError(
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f"Failed to stop detector, detector state {signal_conditions[0][0]}"
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)
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def stop_detector_backend(self) -> None:
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"""Close file writer"""
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self.std_client.stop_writer()
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def filepath_exists(self, filepath: str) -> None:
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"""Check if filepath exists"""
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signal_conditions = [(lambda: os.path.exists(os.path.dirname(filepath)), True)]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.timeout,
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timeout=self.parent.TIMEOUT_FOR_SIGNALS,
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check_stopped=False,
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all_signals=True,
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):
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@@ -264,7 +266,7 @@ class Eiger9MSetup(CustomDetectorMixin):
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]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.timeout,
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timeout=self.parent.TIMEOUT_FOR_SIGNALS,
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check_stopped=True,
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all_signals=False,
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):
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@@ -272,43 +274,7 @@ class Eiger9MSetup(CustomDetectorMixin):
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f"Failed to arm the acquisition. Detector state {signal_conditions[0][0]}"
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)
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def check_scan_id(self) -> None:
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"""Checks if scan_id has changed and stops the scan if it has"""
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old_scan_id = self.parent.scaninfo.scan_id
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self.parent.scaninfo.load_scan_metadata()
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if self.parent.scaninfo.scan_id != old_scan_id:
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self.parent.stopped = True
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def publish_file_location(self, done: bool = False, successful: bool = None) -> None:
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"""
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Publish the filepath to REDIS.
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We publish two events here:
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- file_event: event for the filewriter
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- public_file: event for any secondary service (e.g. radial integ code)
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Args:
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done (bool): True if scan is finished
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successful (bool): True if scan was successful
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"""
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pipe = self.parent.connector.pipeline()
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if successful is None:
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msg = messages.FileMessage(file_path=self.parent.filepath, done=done)
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else:
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msg = messages.FileMessage(
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file_path=self.parent.filepath, done=done, successful=successful
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)
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self.parent.connector.set_and_publish(
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MessageEndpoints.public_file(self.parent.scaninfo.scan_id, self.parent.name),
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msg,
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pipe=pipe,
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)
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self.parent.connector.set_and_publish(
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MessageEndpoints.file_event(self.parent.name), msg, pipe=pipe
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)
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pipe.execute()
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def finished(self):
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def finished(self, timeout: int = 5) -> None:
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"""Check if acquisition is finished."""
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with self._lock:
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signal_conditions = [
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@@ -357,7 +323,7 @@ class SLSDetectorCam(Device):
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detector_state = ADCpt(EpicsSignalRO, "DetectorState_RBV")
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class TriggerSource(enum.IntEnum):
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class TriggerSource(int, enum.Enum):
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"""Trigger signals for Eiger9M detector"""
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AUTO = 0
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@@ -366,7 +332,7 @@ class TriggerSource(enum.IntEnum):
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BURST_TRIGGER = 3
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class DetectorState(enum.IntEnum):
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class DetectorState(int, enum.Enum):
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"""Detector states for Eiger9M detector"""
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IDLE = 0
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@@ -396,37 +362,16 @@ class Eiger9McSAXS(PSIDetectorBase):
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"""
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# Specify which functions are revealed to the user in BEC client
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USER_ACCESS = ["describe"]
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USER_ACCESS = []
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# specify Setup class
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custom_prepare_cls = Eiger9MSetup
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# specify minimum readout time for detector
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# specify minimum readout time for detector and timeout for checks after unstage
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MIN_READOUT = 3e-3
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TIMEOUT_FOR_SIGNALS = 5
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# specify class attributes
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cam = ADCpt(SLSDetectorCam, "cam1:")
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def set_trigger(self, trigger_source: TriggerSource) -> None:
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"""Set trigger source for the detector.
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Check the TriggerSource enum for possible values
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Args:
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trigger_source (TriggerSource): Trigger source for the detector
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"""
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value = trigger_source
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self.cam.trigger_mode.put(value)
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def stage(self) -> list[object]:
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"""
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Add functionality to stage, and arm the detector
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Additional call to:
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- custom_prepare.arm_acquisition()
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"""
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rtr = super().stage()
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self.custom_prepare.arm_acquisition()
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return rtr
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if __name__ == "__main__":
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eiger = Eiger9McSAXS(name="eiger", prefix="X12SA-ES-EIGER9M:", sim_mode=True)
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@@ -1,8 +1,8 @@
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import enum
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import os
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import threading
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from bec_lib import messages
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from bec_lib.endpoints import MessageEndpoints
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from bec_lib import threadlocked
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from bec_lib.logger import bec_logger
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from ophyd import Component as Cpt
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from ophyd import Device, EpicsSignal, EpicsSignalRO, EpicsSignalWithRBV
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@@ -99,6 +99,16 @@ class FalconSetup(CustomDetectorMixin):
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"""
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def __init__(self, *args, parent: Device = None, **kwargs) -> None:
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super().__init__(*args, parent=parent, **kwargs)
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self._lock = threading.RLock()
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def on_init(self) -> None:
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"""Initialize Falcon detector"""
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self.initialize_default_parameter()
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self.initialize_detector()
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self.initialize_detector_backend()
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def initialize_default_parameter(self) -> None:
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"""
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Set default parameters for Falcon
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@@ -124,7 +134,7 @@ class FalconSetup(CustomDetectorMixin):
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"""Initialize Falcon detector"""
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self.stop_detector()
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self.stop_detector_backend()
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self.parent.set_trigger(
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self.set_trigger(
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mapping_mode=MappingSource.MAPPING, trigger_source=TriggerSource.GATE, ignore_gate=0
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)
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# 1 Realtime
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@@ -136,30 +146,6 @@ class FalconSetup(CustomDetectorMixin):
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# Sets the number of pixels/spectra in the buffer
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self.parent.pixels_per_buffer.put(self.parent.value_pixel_per_buffer)
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def stop_detector(self) -> None:
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"""Stops detector"""
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self.parent.stop_all.put(1)
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self.parent.erase_all.put(1)
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signal_conditions = [
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(lambda: self.parent.state.read()[self.parent.state.name]["value"], DetectorState.DONE)
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]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.timeout - self.parent.timeout // 2,
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all_signals=False,
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):
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# Retry stop detector and wait for remaining time
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raise FalconTimeoutError(
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f"Failed to stop detector, timeout with state {signal_conditions[0][0]}"
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)
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def stop_detector_backend(self) -> None:
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"""Stop the detector backend"""
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self.parent.hdf5.capture.put(0)
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def initialize_detector_backend(self) -> None:
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"""Initialize the detector backend for Falcon."""
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self.parent.hdf5.enable.put(1)
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@@ -173,9 +159,16 @@ class FalconSetup(CustomDetectorMixin):
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# Segmentation into Spectra within EPICS, 1 is activate, 0 is deactivate
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self.parent.nd_array_mode.put(1)
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def on_stage(self) -> None:
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"""Prepare detector and backend for acquisition"""
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self.prepare_detector()
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self.prepare_data_backend()
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self.publish_file_location(done=False)
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self.arm_acquisition()
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def prepare_detector(self) -> None:
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"""Prepare detector for acquisition"""
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self.parent.set_trigger(
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self.set_trigger(
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mapping_mode=MappingSource.MAPPING, trigger_source=TriggerSource.GATE, ignore_gate=0
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)
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self.parent.preset_real.put(self.parent.scaninfo.exp_time)
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@@ -212,7 +205,7 @@ class FalconSetup(CustomDetectorMixin):
|
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]
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if not self.wait_for_signals(
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signal_conditions=signal_conditions,
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timeout=self.parent.timeout,
|
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timeout=self.parent.TIMEOUT_FOR_SIGNALS,
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check_stopped=True,
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all_signals=False,
|
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):
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@@ -220,42 +213,41 @@ class FalconSetup(CustomDetectorMixin):
|
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f"Failed to arm the acquisition. Detector state {signal_conditions[0][0]}"
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)
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def check_scan_id(self) -> None:
|
||||
"""Checks if scan_id has changed and stops the scan if it has"""
|
||||
old_scan_id = self.parent.scaninfo.scan_id
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self.parent.scaninfo.load_scan_metadata()
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if self.parent.scaninfo.scan_id != old_scan_id:
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self.parent.stopped = True
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def on_unstage(self) -> None:
|
||||
"""Unstage detector and backend"""
|
||||
self.finished()
|
||||
self.publish_file_location(done=True, successful=True)
|
||||
|
||||
def publish_file_location(self, done: bool = False, successful: bool = None) -> None:
|
||||
"""
|
||||
Publish the filepath to REDIS.
|
||||
def on_stop(self) -> None:
|
||||
"""Stop detector and backend"""
|
||||
self.stop_detector()
|
||||
self.stop_detector_backend()
|
||||
|
||||
We publish two events here:
|
||||
- file_event: event for the filewriter
|
||||
- public_file: event for any secondary service (e.g. radial integ code)
|
||||
def stop_detector(self) -> None:
|
||||
"""Stops detector"""
|
||||
|
||||
Args:
|
||||
done (bool): True if scan is finished
|
||||
successful (bool): True if scan was successful
|
||||
"""
|
||||
pipe = self.parent.connector.pipeline()
|
||||
if successful is None:
|
||||
msg = messages.FileMessage(file_path=self.parent.filepath, done=done)
|
||||
else:
|
||||
msg = messages.FileMessage(
|
||||
file_path=self.parent.filepath, done=done, successful=successful
|
||||
self.parent.stop_all.put(1)
|
||||
self.parent.erase_all.put(1)
|
||||
|
||||
signal_conditions = [
|
||||
(lambda: self.parent.state.read()[self.parent.state.name]["value"], DetectorState.DONE)
|
||||
]
|
||||
|
||||
if not self.wait_for_signals(
|
||||
signal_conditions=signal_conditions,
|
||||
timeout=self.parent.TIMEOUT_FOR_SIGNALS - self.parent.TIMEOUT_FOR_SIGNALS // 2,
|
||||
all_signals=False,
|
||||
):
|
||||
# Retry stop detector and wait for remaining time
|
||||
raise FalconTimeoutError(
|
||||
f"Failed to stop detector, timeout with state {signal_conditions[0][0]}"
|
||||
)
|
||||
self.parent.connector.set_and_publish(
|
||||
MessageEndpoints.public_file(self.parent.scaninfo.scan_id, self.parent.name),
|
||||
msg,
|
||||
pipe=pipe,
|
||||
)
|
||||
self.parent.connector.set_and_publish(
|
||||
MessageEndpoints.file_event(self.parent.name), msg, pipe=pipe
|
||||
)
|
||||
pipe.execute()
|
||||
|
||||
def stop_detector_backend(self) -> None:
|
||||
"""Stop the detector backend"""
|
||||
self.parent.hdf5.capture.put(0)
|
||||
|
||||
@threadlocked
|
||||
def finished(self) -> None:
|
||||
"""Check if scan finished succesfully"""
|
||||
total_frames = int(
|
||||
@@ -267,7 +259,7 @@ class FalconSetup(CustomDetectorMixin):
|
||||
]
|
||||
if not self.wait_for_signals(
|
||||
signal_conditions=signal_conditions,
|
||||
timeout=self.parent.timeout,
|
||||
timeout=self.parent.TIMEOUT_FOR_SIGNALS,
|
||||
check_stopped=True,
|
||||
all_signals=True,
|
||||
):
|
||||
@@ -279,6 +271,24 @@ class FalconSetup(CustomDetectorMixin):
|
||||
self.stop_detector()
|
||||
self.stop_detector_backend()
|
||||
|
||||
def set_trigger(
|
||||
self, mapping_mode: MappingSource, trigger_source: TriggerSource, ignore_gate: int = 0
|
||||
) -> None:
|
||||
"""
|
||||
Set triggering mode for detector
|
||||
|
||||
Args:
|
||||
mapping_mode (MappingSource): Mapping mode for the detector
|
||||
trigger_source (TriggerSource): Trigger source for the detector, pixel_advance_signal
|
||||
ignore_gate (int): Ignore gate from TTL signal; defaults to 0
|
||||
|
||||
"""
|
||||
mapping = int(mapping_mode)
|
||||
trigger = trigger_source
|
||||
self.parent.collect_mode.put(mapping)
|
||||
self.parent.pixel_advance_mode.put(trigger)
|
||||
self.parent.ignore_gate.put(ignore_gate)
|
||||
|
||||
|
||||
class FalconcSAXS(PSIDetectorBase):
|
||||
"""
|
||||
@@ -303,6 +313,7 @@ class FalconcSAXS(PSIDetectorBase):
|
||||
custom_prepare_cls = FalconSetup
|
||||
# specify minimum readout time for detector
|
||||
MIN_READOUT = 3e-3
|
||||
TIMEOUT_FOR_SIGNALS = 5
|
||||
|
||||
# specify class attributes
|
||||
dxp = Cpt(EpicsDXPFalcon, "dxp1:")
|
||||
@@ -330,30 +341,6 @@ class FalconcSAXS(PSIDetectorBase):
|
||||
pixels_per_run = Cpt(EpicsSignal, "PixelsPerRun")
|
||||
nd_array_mode = Cpt(EpicsSignal, "NDArrayMode")
|
||||
|
||||
def set_trigger(
|
||||
self, mapping_mode: MappingSource, trigger_source: TriggerSource, ignore_gate: int = 0
|
||||
) -> None:
|
||||
"""
|
||||
Set triggering mode for detector
|
||||
|
||||
Args:
|
||||
mapping_mode (MappingSource): Mapping mode for the detector
|
||||
trigger_source (TriggerSource): Trigger source for the detector, pixel_advance_signal
|
||||
ignore_gate (int): Ignore gate from TTL signal; defaults to 0
|
||||
|
||||
"""
|
||||
mapping = int(mapping_mode)
|
||||
trigger = trigger_source
|
||||
self.collect_mode.put(mapping)
|
||||
self.pixel_advance_mode.put(trigger)
|
||||
self.ignore_gate.put(ignore_gate)
|
||||
|
||||
def stage(self) -> list[object]:
|
||||
"""Stage"""
|
||||
rtr = super().stage()
|
||||
self.custom_prepare.arm_acquisition()
|
||||
return rtr
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
falcon = FalconcSAXS(name="falcon", prefix="X12SA-SITORO:", sim_mode=True)
|
||||
|
||||
@@ -74,6 +74,11 @@ class MCSSetup(CustomDetectorMixin):
|
||||
]
|
||||
self.mca_data = defaultdict(lambda: [])
|
||||
|
||||
def on_init(self) -> None:
|
||||
"""Init sequence for the detector"""
|
||||
self.initialize_detector()
|
||||
self.initialize_detector_backend()
|
||||
|
||||
def initialize_detector(self) -> None:
|
||||
"""Initialize detector"""
|
||||
# External trigger for pixel advance
|
||||
@@ -84,7 +89,7 @@ class MCSSetup(CustomDetectorMixin):
|
||||
# Set number of channels to 5
|
||||
self.parent.mux_output.set(5)
|
||||
# Trigger Mode used for cSAXS
|
||||
self.parent.set_trigger(TriggerSource.MODE3)
|
||||
self.parent.input_mode.set(TriggerSource.MODE3)
|
||||
# specify polarity of trigger signals
|
||||
self.parent.input_polarity.set(0)
|
||||
self.parent.output_polarity.set(1)
|
||||
@@ -142,10 +147,15 @@ class MCSSetup(CustomDetectorMixin):
|
||||
expire=self._stream_ttl,
|
||||
)
|
||||
|
||||
def on_stage(self) -> None:
|
||||
"""Stage detector"""
|
||||
self.prepare_detector()
|
||||
self.prepare_detector_backend()
|
||||
|
||||
def prepare_detector(self) -> None:
|
||||
"""Prepare detector for scan"""
|
||||
self.set_acquisition_params()
|
||||
self.parent.set_trigger(TriggerSource.MODE3)
|
||||
self.parent.input_mode.set(TriggerSource.MODE3)
|
||||
|
||||
def set_acquisition_params(self) -> None:
|
||||
"""Set acquisition parameters for scan"""
|
||||
@@ -175,6 +185,10 @@ class MCSSetup(CustomDetectorMixin):
|
||||
self.counter = 0
|
||||
self.parent.erase_start.set(1)
|
||||
|
||||
def on_unstage(self) -> None:
|
||||
"""Unstage detector"""
|
||||
self.finished()
|
||||
|
||||
def finished(self) -> None:
|
||||
"""Check if acquisition is finished, if not successful, rais MCSTimeoutError"""
|
||||
signal_conditions = [
|
||||
@@ -183,7 +197,7 @@ class MCSSetup(CustomDetectorMixin):
|
||||
]
|
||||
if not self.wait_for_signals(
|
||||
signal_conditions=signal_conditions,
|
||||
timeout=self.parent.timeout,
|
||||
timeout=self.parent.TIMEOUT_FOR_SIGNALS,
|
||||
check_stopped=True,
|
||||
all_signals=True,
|
||||
):
|
||||
@@ -195,12 +209,15 @@ class MCSSetup(CustomDetectorMixin):
|
||||
f" {total_frames} frames arriving at the mcs card"
|
||||
)
|
||||
|
||||
def on_stop(self) -> None:
|
||||
"""Stop detector"""
|
||||
self.stop_detector()
|
||||
self.stop_detector_backend()
|
||||
|
||||
def stop_detector(self) -> None:
|
||||
"""Stop detector"""
|
||||
self.parent.stop_all.set(1)
|
||||
|
||||
return super().stop_detector()
|
||||
|
||||
def stop_detector_backend(self) -> None:
|
||||
"""Stop acquisition of data"""
|
||||
self.acquisition_done = True
|
||||
@@ -213,7 +230,7 @@ class SIS38XX(Device):
|
||||
class MCScSAXS(PSIDetectorBase):
|
||||
"""MCS card for cSAXS for implementation at cSAXS beamline"""
|
||||
|
||||
USER_ACCESS = ["describe", "_init_mcs"]
|
||||
USER_ACCESS = []
|
||||
SUB_PROGRESS = "progress"
|
||||
SUB_VALUE = "value"
|
||||
_default_sub = SUB_VALUE
|
||||
@@ -222,6 +239,7 @@ class MCScSAXS(PSIDetectorBase):
|
||||
custom_prepare_cls = MCSSetup
|
||||
# specify minimum readout time for detector
|
||||
MIN_READOUT = 0
|
||||
TIMEOUT_FOR_SIGNALS = 5
|
||||
|
||||
# PV access to SISS38XX card
|
||||
# Acquisition
|
||||
@@ -272,11 +290,8 @@ class MCScSAXS(PSIDetectorBase):
|
||||
*,
|
||||
name,
|
||||
kind=None,
|
||||
read_attrs=None,
|
||||
configuration_attrs=None,
|
||||
parent=None,
|
||||
device_manager=None,
|
||||
sim_mode=False,
|
||||
mcs_config=None,
|
||||
**kwargs,
|
||||
):
|
||||
@@ -289,25 +304,11 @@ class MCScSAXS(PSIDetectorBase):
|
||||
prefix=prefix,
|
||||
name=name,
|
||||
kind=kind,
|
||||
read_attrs=read_attrs,
|
||||
configuration_attrs=configuration_attrs,
|
||||
parent=parent,
|
||||
device_manager=device_manager,
|
||||
sim_mode=sim_mode,
|
||||
**kwargs,
|
||||
)
|
||||
|
||||
def set_trigger(self, trigger_source: TriggerSource) -> None:
|
||||
"""Set trigger mode from TriggerSource"""
|
||||
value = int(trigger_source)
|
||||
self.input_mode.set(value)
|
||||
|
||||
def stage(self) -> list[object]:
|
||||
"""stage the detector for upcoming acquisition"""
|
||||
rtr = super().stage()
|
||||
self.custom_prepare.arm_acquisition()
|
||||
return rtr
|
||||
|
||||
|
||||
# Automatically connect to test environmenr if directly invoked
|
||||
if __name__ == "__main__":
|
||||
|
||||
@@ -1,12 +1,12 @@
|
||||
import enum
|
||||
import json
|
||||
import os
|
||||
import threading
|
||||
import time
|
||||
|
||||
import numpy as np
|
||||
import requests
|
||||
from bec_lib import bec_logger, messages
|
||||
from bec_lib.endpoints import MessageEndpoints
|
||||
from bec_lib import bec_logger
|
||||
from ophyd import ADComponent as ADCpt
|
||||
from ophyd import Device, EpicsSignal, EpicsSignalRO, EpicsSignalWithRBV, Staged
|
||||
from ophyd_devices.interfaces.base_classes.psi_detector_base import (
|
||||
@@ -16,8 +16,6 @@ from ophyd_devices.interfaces.base_classes.psi_detector_base import (
|
||||
|
||||
logger = bec_logger.logger
|
||||
|
||||
MIN_READOUT = 3e-3
|
||||
|
||||
|
||||
class PilatusError(Exception):
|
||||
"""Base class for exceptions in this module."""
|
||||
@@ -72,6 +70,15 @@ class PilatusSetup(CustomDetectorMixin):
|
||||
|
||||
"""
|
||||
|
||||
def __init__(self, *args, parent: Device = None, **kwargs) -> None:
|
||||
super().__init__(*args, parent=parent, **kwargs)
|
||||
self._lock = threading.RLock()
|
||||
|
||||
def on_init(self) -> None:
|
||||
"""Initialize the detector"""
|
||||
self.initialize_default_parameter()
|
||||
self.initialize_detector()
|
||||
|
||||
def initialize_default_parameter(self) -> None:
|
||||
"""Set default parameters for Eiger9M detector"""
|
||||
self.update_readout_time()
|
||||
@@ -90,7 +97,13 @@ class PilatusSetup(CustomDetectorMixin):
|
||||
# Stops the detector
|
||||
self.stop_detector()
|
||||
# Sets the trigger source to GATING
|
||||
self.parent.set_trigger(TriggerSource.EXT_ENABLE)
|
||||
self.parent.cam.trigger_mode.put(TriggerSource.EXT_ENABLE)
|
||||
|
||||
def on_stage(self) -> None:
|
||||
"""Stage the detector for scan"""
|
||||
self.prepare_detector()
|
||||
self.prepare_data_backend()
|
||||
self.publish_file_location(done=False, metadata={"input_path": self.parent.filepath_raw})
|
||||
|
||||
def prepare_detector(self) -> None:
|
||||
"""
|
||||
@@ -101,84 +114,7 @@ class PilatusSetup(CustomDetectorMixin):
|
||||
"""
|
||||
self.set_detector_threshold()
|
||||
self.set_acquisition_params()
|
||||
self.parent.set_trigger(TriggerSource.EXT_ENABLE)
|
||||
|
||||
def set_detector_threshold(self) -> None:
|
||||
"""
|
||||
Set correct detector threshold to 1/2 of current X-ray energy, allow 5% tolerance
|
||||
|
||||
Threshold might be in ev or keV
|
||||
"""
|
||||
|
||||
# get current beam energy from device manageer
|
||||
mokev = self.parent.device_manager.devices.mokev.obj.read()[
|
||||
self.parent.device_manager.devices.mokev.name
|
||||
]["value"]
|
||||
factor = 1
|
||||
|
||||
# Check if energies are eV or keV, assume keV as the default
|
||||
unit = getattr(self.parent.cam.threshold_energy, "units", None)
|
||||
if unit is not None and unit == "eV":
|
||||
factor = 1000
|
||||
|
||||
# set energy on detector
|
||||
setpoint = int(mokev * factor)
|
||||
|
||||
# set threshold on detector
|
||||
threshold = self.parent.cam.threshold_energy.read()[self.parent.cam.threshold_energy.name][
|
||||
"value"
|
||||
]
|
||||
if not np.isclose(setpoint / 2, threshold, rtol=0.05):
|
||||
self.parent.cam.threshold_energy.set(setpoint / 2)
|
||||
|
||||
def set_acquisition_params(self) -> None:
|
||||
"""Set acquisition parameters for the detector"""
|
||||
|
||||
# Set number of images and frames (frames is for internal burst of detector)
|
||||
self.parent.cam.num_images.put(
|
||||
int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger)
|
||||
)
|
||||
self.parent.cam.num_frames.put(1)
|
||||
|
||||
# Update the readout time of the detector
|
||||
self.update_readout_time()
|
||||
|
||||
def create_directory(self, filepath: str) -> None:
|
||||
"""Create directory if it does not exist"""
|
||||
os.makedirs(filepath, exist_ok=True)
|
||||
|
||||
def stop_detector_backend(self) -> None:
|
||||
"""Stop the file writer zmq service for pilatus_2"""
|
||||
self.close_file_writer()
|
||||
time.sleep(0.1)
|
||||
self.stop_file_writer()
|
||||
time.sleep(0.1)
|
||||
|
||||
def close_file_writer(self) -> None:
|
||||
"""
|
||||
Close the file writer for pilatus_2
|
||||
|
||||
Delete the data from x12sa-pd-2
|
||||
|
||||
"""
|
||||
url = "http://x12sa-pd-2:8080/stream/pilatus_2"
|
||||
try:
|
||||
res = self.send_requests_delete(url=url)
|
||||
if not res.ok:
|
||||
res.raise_for_status()
|
||||
except Exception as exc:
|
||||
logger.info(f"Pilatus2 close threw Exception: {exc}")
|
||||
|
||||
def stop_file_writer(self) -> None:
|
||||
"""
|
||||
Stop the file writer for pilatus_2
|
||||
|
||||
Runs on xbl-daq-34
|
||||
"""
|
||||
url = "http://xbl-daq-34:8091/pilatus_2/stop"
|
||||
res = self.send_requests_put(url=url)
|
||||
if not res.ok:
|
||||
res.raise_for_status()
|
||||
self.parent.cam.trigger_mode.put(TriggerSource.EXT_ENABLE)
|
||||
|
||||
def prepare_data_backend(self) -> None:
|
||||
"""
|
||||
@@ -275,6 +211,76 @@ class PilatusSetup(CustomDetectorMixin):
|
||||
except Exception as exc:
|
||||
logger.info(f"Pilatus2 wait threw Exception: {exc}")
|
||||
|
||||
def set_detector_threshold(self) -> None:
|
||||
"""
|
||||
Set correct detector threshold to 1/2 of current X-ray energy, allow 5% tolerance
|
||||
|
||||
Threshold might be in ev or keV
|
||||
"""
|
||||
|
||||
# get current beam energy from device manageer
|
||||
mokev = self.parent.device_manager.devices.mokev.obj.read()[
|
||||
self.parent.device_manager.devices.mokev.name
|
||||
]["value"]
|
||||
factor = 1
|
||||
|
||||
# Check if energies are eV or keV, assume keV as the default
|
||||
unit = getattr(self.parent.cam.threshold_energy, "units", None)
|
||||
if unit is not None and unit == "eV":
|
||||
factor = 1000
|
||||
|
||||
# set energy on detector
|
||||
setpoint = int(mokev * factor)
|
||||
|
||||
# set threshold on detector
|
||||
threshold = self.parent.cam.threshold_energy.read()[self.parent.cam.threshold_energy.name][
|
||||
"value"
|
||||
]
|
||||
if not np.isclose(setpoint / 2, threshold, rtol=0.05):
|
||||
self.parent.cam.threshold_energy.set(setpoint / 2)
|
||||
|
||||
def set_acquisition_params(self) -> None:
|
||||
"""Set acquisition parameters for the detector"""
|
||||
|
||||
# Set number of images and frames (frames is for internal burst of detector)
|
||||
self.parent.cam.num_images.put(
|
||||
int(self.parent.scaninfo.num_points * self.parent.scaninfo.frames_per_trigger)
|
||||
)
|
||||
self.parent.cam.num_frames.put(1)
|
||||
|
||||
# Update the readout time of the detector
|
||||
self.update_readout_time()
|
||||
|
||||
def create_directory(self, filepath: str) -> None:
|
||||
"""Create directory if it does not exist"""
|
||||
os.makedirs(filepath, exist_ok=True)
|
||||
|
||||
def close_file_writer(self) -> None:
|
||||
"""
|
||||
Close the file writer for pilatus_2
|
||||
|
||||
Delete the data from x12sa-pd-2
|
||||
|
||||
"""
|
||||
url = "http://x12sa-pd-2:8080/stream/pilatus_2"
|
||||
try:
|
||||
res = self.send_requests_delete(url=url)
|
||||
if not res.ok:
|
||||
res.raise_for_status()
|
||||
except Exception as exc:
|
||||
logger.info(f"Pilatus2 close threw Exception: {exc}")
|
||||
|
||||
def stop_file_writer(self) -> None:
|
||||
"""
|
||||
Stop the file writer for pilatus_2
|
||||
|
||||
Runs on xbl-daq-34
|
||||
"""
|
||||
url = "http://xbl-daq-34:8091/pilatus_2/stop"
|
||||
res = self.send_requests_put(url=url)
|
||||
if not res.ok:
|
||||
res.raise_for_status()
|
||||
|
||||
def send_requests_put(self, url: str, data: list = None, headers: dict = None) -> object:
|
||||
"""
|
||||
Send a put request to the given url
|
||||
@@ -302,14 +308,8 @@ class PilatusSetup(CustomDetectorMixin):
|
||||
"""
|
||||
return requests.delete(url=url, headers=headers, timeout=5)
|
||||
|
||||
def pre_scan(self) -> None:
|
||||
"""
|
||||
Pre_scan function call
|
||||
|
||||
This function is called just before the scan core.
|
||||
Here it is used to arm the detector for the acquisition
|
||||
|
||||
"""
|
||||
def on_pre_scan(self) -> None:
|
||||
"""Prepare detector for scan"""
|
||||
self.arm_acquisition()
|
||||
|
||||
def arm_acquisition(self) -> None:
|
||||
@@ -318,42 +318,14 @@ class PilatusSetup(CustomDetectorMixin):
|
||||
# TODO is this sleep needed? to be tested with detector and for how long
|
||||
time.sleep(0.5)
|
||||
|
||||
def publish_file_location(self, done: bool = False, successful: bool = None) -> None:
|
||||
"""
|
||||
Publish the filepath to REDIS and publish the event for the h5_converter
|
||||
|
||||
We publish two events here:
|
||||
- file_event: event for the filewriter
|
||||
- public_file: event for any secondary service (e.g. radial integ code)
|
||||
|
||||
Args:
|
||||
done (bool): True if scan is finished
|
||||
successful (bool): True if scan was successful
|
||||
"""
|
||||
pipe = self.parent.connector.pipeline()
|
||||
if successful is None:
|
||||
msg = messages.FileMessage(
|
||||
file_path=self.parent.filepath,
|
||||
done=done,
|
||||
metadata={"input_path": self.parent.filepath_raw},
|
||||
)
|
||||
else:
|
||||
msg = messages.FileMessage(
|
||||
file_path=self.parent.filepath,
|
||||
done=done,
|
||||
successful=successful,
|
||||
metadata={"input_path": self.parent.filepath_raw},
|
||||
)
|
||||
self.parent.connector.set_and_publish(
|
||||
MessageEndpoints.public_file(self.parent.scaninfo.scan_id, self.parent.name),
|
||||
msg,
|
||||
pipe=pipe,
|
||||
def on_unstage(self) -> None:
|
||||
"""Unstage the detector"""
|
||||
self.finished()
|
||||
self.publish_file_location(
|
||||
done=True, successful=True, metadata={"input_path": self.parent.filepath_raw}
|
||||
)
|
||||
self.parent.connector.set_and_publish(
|
||||
MessageEndpoints.file_event(self.parent.name), msg, pipe=pipe
|
||||
)
|
||||
pipe.execute()
|
||||
|
||||
@threadlocked
|
||||
def finished(self) -> None:
|
||||
"""Check if acquisition is finished."""
|
||||
# pylint: disable=protected-access
|
||||
@@ -363,7 +335,7 @@ class PilatusSetup(CustomDetectorMixin):
|
||||
]
|
||||
if not self.wait_for_signals(
|
||||
signal_conditions=signal_conditions,
|
||||
timeout=self.parent.timeout,
|
||||
timeout=self.parent.TIMEOUT_FOR_SIGNALS,
|
||||
check_stopped=True,
|
||||
all_signals=True,
|
||||
):
|
||||
@@ -375,16 +347,21 @@ class PilatusSetup(CustomDetectorMixin):
|
||||
self.stop_detector()
|
||||
self.stop_detector_backend()
|
||||
|
||||
def on_stop(self) -> None:
|
||||
"""Stop detector"""
|
||||
self.stop_detector()
|
||||
self.stop_detector_backend()
|
||||
|
||||
def stop_detector(self) -> None:
|
||||
"""Stop detector"""
|
||||
self.parent.cam.acquire.put(0)
|
||||
|
||||
def check_scan_id(self) -> None:
|
||||
"""Checks if scan_id has changed and stops the scan if it has"""
|
||||
old_scan_id = self.parent.scaninfo.scan_id
|
||||
self.parent.scaninfo.load_scan_metadata()
|
||||
if self.parent.scaninfo.scan_id != old_scan_id:
|
||||
self.parent.stopped = True
|
||||
def stop_detector_backend(self) -> None:
|
||||
"""Stop the file writer zmq service for pilatus_2"""
|
||||
self.close_file_writer()
|
||||
time.sleep(0.1)
|
||||
self.stop_file_writer()
|
||||
time.sleep(0.1)
|
||||
|
||||
|
||||
class PilatuscSAXS(PSIDetectorBase):
|
||||
@@ -401,20 +378,16 @@ class PilatuscSAXS(PSIDetectorBase):
|
||||
"""
|
||||
|
||||
# Specify which functions are revealed to the user in BEC client
|
||||
USER_ACCESS = ["describe"]
|
||||
USER_ACCESS = []
|
||||
|
||||
# specify Setup class
|
||||
custom_prepare_cls = PilatusSetup
|
||||
# specify minimum readout time for detector
|
||||
MIN_READOUT = 3e-3
|
||||
TIMEOUT_FOR_SIGNALS = 5
|
||||
# specify class attributes
|
||||
cam = ADCpt(SLSDetectorCam, "cam1:")
|
||||
|
||||
def set_trigger(self, trigger_source: TriggerSource) -> None:
|
||||
"""Set trigger source for the detector"""
|
||||
value = trigger_source
|
||||
self.cam.trigger_mode.put(value)
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
pilatus_2 = PilatuscSAXS(name="pilatus_2", prefix="X12SA-ES-PILATUS300K:", sim_mode=True)
|
||||
|
||||
@@ -9,24 +9,14 @@ from bec_lib.endpoints import MessageEndpoints
|
||||
from bec_server.device_server.tests.utils import DMMock
|
||||
from ophyd_devices.tests.utils import MockPV
|
||||
|
||||
from csaxs_bec.devices.epics.eiger9m_csaxs import Eiger9McSAXS
|
||||
|
||||
|
||||
def patch_dual_pvs(device):
|
||||
for walk in device.walk_signals():
|
||||
if not hasattr(walk.item, "_read_pv"):
|
||||
continue
|
||||
if not hasattr(walk.item, "_write_pv"):
|
||||
continue
|
||||
if walk.item._read_pv.pvname.endswith("_RBV"):
|
||||
walk.item._read_pv = walk.item._write_pv
|
||||
from csaxs_bec.devices.epics.devices.eiger9m_csaxs import Eiger9McSAXS
|
||||
from tests.utils import patch_dual_pvs
|
||||
|
||||
|
||||
@pytest.fixture(scope="function")
|
||||
def mock_det():
|
||||
name = "eiger"
|
||||
prefix = "X12SA-ES-EIGER9M:"
|
||||
sim_mode = False
|
||||
dm = DMMock()
|
||||
with mock.patch.object(dm, "connector"):
|
||||
with (
|
||||
@@ -39,10 +29,9 @@ def mock_det():
|
||||
mock_cl.get_pv = MockPV
|
||||
mock_cl.thread_class = threading.Thread
|
||||
with mock.patch.object(Eiger9McSAXS, "_init"):
|
||||
det = Eiger9McSAXS(
|
||||
name=name, prefix=prefix, device_manager=dm, sim_mode=sim_mode
|
||||
)
|
||||
det = Eiger9McSAXS(name=name, prefix=prefix, device_manager=dm)
|
||||
patch_dual_pvs(det)
|
||||
det.TIMEOUT_FOR_SIGNALS = 0.1
|
||||
yield det
|
||||
|
||||
|
||||
@@ -50,7 +39,6 @@ def test_init():
|
||||
"""Test the _init function:"""
|
||||
name = "eiger"
|
||||
prefix = "X12SA-ES-EIGER9M:"
|
||||
sim_mode = False
|
||||
dm = DMMock()
|
||||
with mock.patch.object(dm, "connector"):
|
||||
with (
|
||||
@@ -72,7 +60,7 @@ def test_init():
|
||||
"csaxs_bec.devices.epics.eiger9m_csaxs.Eiger9MSetup.initialize_detector_backend"
|
||||
) as mock_init_backend,
|
||||
):
|
||||
Eiger9McSAXS(name=name, prefix=prefix, device_manager=dm, sim_mode=sim_mode)
|
||||
Eiger9McSAXS(name=name, prefix=prefix, device_manager=dm)
|
||||
mock_default.assert_called_once()
|
||||
mock_init_det.assert_called_once()
|
||||
mock_init_backend.assert_called_once()
|
||||
@@ -236,7 +224,7 @@ def test_stage(
|
||||
mock_det.cam.beam_energy.put(scaninfo["mokev"])
|
||||
mock_det.stopped = stopped
|
||||
mock_det.cam.detector_state._read_pv.mock_data = detector_state
|
||||
with mock.patch.object(mock_det.custom_prepare, "prepare_detector_backend") as mock_prep_fw:
|
||||
with mock.patch.object(mock_det.custom_prepare, "prepare_data_backend") as mock_prep_fw:
|
||||
mock_det.filepath = scaninfo["filepath"]
|
||||
if expected_exception:
|
||||
with pytest.raises(Exception):
|
||||
|
||||
@@ -10,24 +10,14 @@ from bec_lib.endpoints import MessageEndpoints
|
||||
from bec_server.device_server.tests.utils import DMMock
|
||||
from ophyd_devices.tests.utils import MockPV
|
||||
|
||||
from csaxs_bec.devices.epics.falcon_csaxs import FalconcSAXS, FalconTimeoutError
|
||||
|
||||
|
||||
def patch_dual_pvs(device):
|
||||
for walk in device.walk_signals():
|
||||
if not hasattr(walk.item, "_read_pv"):
|
||||
continue
|
||||
if not hasattr(walk.item, "_write_pv"):
|
||||
continue
|
||||
if walk.item._read_pv.pvname.endswith("_RBV"):
|
||||
walk.item._read_pv = walk.item._write_pv
|
||||
from csaxs_bec.devices.epics.devices.falcon_csaxs import FalconcSAXS, FalconTimeoutError
|
||||
from tests.utils import patch_dual_pvs
|
||||
|
||||
|
||||
@pytest.fixture(scope="function")
|
||||
def mock_det():
|
||||
name = "falcon"
|
||||
prefix = "X12SA-SITORO:"
|
||||
sim_mode = False
|
||||
dm = DMMock()
|
||||
with mock.patch.object(dm, "connector"):
|
||||
with (
|
||||
@@ -42,10 +32,9 @@ def mock_det():
|
||||
mock_cl.get_pv = MockPV
|
||||
mock_cl.thread_class = threading.Thread
|
||||
with mock.patch.object(FalconcSAXS, "_init"):
|
||||
det = FalconcSAXS(
|
||||
name=name, prefix=prefix, device_manager=dm, sim_mode=sim_mode
|
||||
)
|
||||
det = FalconcSAXS(name=name, prefix=prefix, device_manager=dm)
|
||||
patch_dual_pvs(det)
|
||||
det.TIMEOUT_FOR_SIGNALS = 0.1
|
||||
yield det
|
||||
|
||||
|
||||
@@ -139,9 +128,9 @@ def test_stage(mock_det, scaninfo):
|
||||
This includes testing _prep_det
|
||||
"""
|
||||
with (
|
||||
mock.patch.object(mock_det, "set_trigger") as mock_set_trigger,
|
||||
mock.patch.object(mock_det.custom_prepare, "set_trigger") as mock_set_trigger,
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "prepare_detector_backend"
|
||||
mock_det.custom_prepare, "prepare_data_backend"
|
||||
) as mock_prep_data_backend,
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "publish_file_location"
|
||||
|
||||
@@ -16,23 +16,13 @@ from csaxs_bec.devices.epics.mcs_csaxs import (
|
||||
ReadoutMode,
|
||||
TriggerSource,
|
||||
)
|
||||
|
||||
|
||||
def patch_dual_pvs(device):
|
||||
for walk in device.walk_signals():
|
||||
if not hasattr(walk.item, "_read_pv"):
|
||||
continue
|
||||
if not hasattr(walk.item, "_write_pv"):
|
||||
continue
|
||||
if walk.item._read_pv.pvname.endswith("_RBV"):
|
||||
walk.item._read_pv = walk.item._write_pv
|
||||
from tests.utils import patch_dual_pvs
|
||||
|
||||
|
||||
@pytest.fixture(scope="function")
|
||||
def mock_det():
|
||||
name = "mcs"
|
||||
prefix = "X12SA-MCS:"
|
||||
sim_mode = False
|
||||
dm = DMMock()
|
||||
with mock.patch.object(dm, "connector"):
|
||||
with (
|
||||
@@ -47,8 +37,9 @@ def mock_det():
|
||||
mock_cl.get_pv = MockPV
|
||||
mock_cl.thread_class = threading.Thread
|
||||
with mock.patch.object(MCScSAXS, "_init"):
|
||||
det = MCScSAXS(name=name, prefix=prefix, device_manager=dm, sim_mode=sim_mode)
|
||||
det = MCScSAXS(name=name, prefix=prefix, device_manager=dm)
|
||||
patch_dual_pvs(det)
|
||||
det.TIMEOUT_FOR_SIGNALS = 0.1
|
||||
yield det
|
||||
|
||||
|
||||
@@ -56,7 +47,6 @@ def test_init():
|
||||
"""Test the _init function:"""
|
||||
name = "eiger"
|
||||
prefix = "X12SA-ES-EIGER9M:"
|
||||
sim_mode = False
|
||||
dm = DMMock()
|
||||
with mock.patch.object(dm, "connector"):
|
||||
with (
|
||||
@@ -68,9 +58,6 @@ def test_init():
|
||||
with mock.patch.object(ophyd, "cl") as mock_cl:
|
||||
mock_cl.get_pv = MockPV
|
||||
with (
|
||||
mock.patch(
|
||||
"csaxs_bec.devices.epics.mcs_csaxs.MCSSetup.initialize_default_parameter"
|
||||
) as mock_default,
|
||||
mock.patch(
|
||||
"csaxs_bec.devices.epics.mcs_csaxs.MCSSetup.initialize_detector"
|
||||
) as mock_init_det,
|
||||
@@ -78,8 +65,7 @@ def test_init():
|
||||
"csaxs_bec.devices.epics.mcs_csaxs.MCSSetup.initialize_detector_backend"
|
||||
) as mock_init_backend,
|
||||
):
|
||||
MCScSAXS(name=name, prefix=prefix, device_manager=dm, sim_mode=sim_mode)
|
||||
mock_default.assert_called_once()
|
||||
MCScSAXS(name=name, prefix=prefix, device_manager=dm)
|
||||
mock_init_det.assert_called_once()
|
||||
mock_init_backend.assert_called_once()
|
||||
|
||||
@@ -290,7 +276,6 @@ def test_unstage(mock_det, stopped, expected_exception):
|
||||
else:
|
||||
mock_det.unstage()
|
||||
mock_finished.assert_called_once()
|
||||
mock_publish_file_location.assert_called_with(done=True, successful=True)
|
||||
assert mock_det.stopped is False
|
||||
|
||||
|
||||
|
||||
@@ -10,24 +10,14 @@ from bec_lib.endpoints import MessageEndpoints
|
||||
from bec_server.device_server.tests.utils import DMMock
|
||||
from ophyd_devices.tests.utils import MockPV
|
||||
|
||||
from csaxs_bec.devices.epics.pilatus_csaxs import PilatuscSAXS
|
||||
|
||||
|
||||
def patch_dual_pvs(device):
|
||||
for walk in device.walk_signals():
|
||||
if not hasattr(walk.item, "_read_pv"):
|
||||
continue
|
||||
if not hasattr(walk.item, "_write_pv"):
|
||||
continue
|
||||
if walk.item._read_pv.pvname.endswith("_RBV"):
|
||||
walk.item._read_pv = walk.item._write_pv
|
||||
from csaxs_bec.devices.epics.devices.pilatus_csaxs import PilatuscSAXS
|
||||
from tests.utils import patch_dual_pvs
|
||||
|
||||
|
||||
@pytest.fixture(scope="function")
|
||||
def mock_det():
|
||||
name = "pilatus"
|
||||
prefix = "X12SA-ES-PILATUS300K:"
|
||||
sim_mode = False
|
||||
dm = DMMock()
|
||||
with mock.patch.object(dm, "connector"):
|
||||
with (
|
||||
@@ -40,9 +30,7 @@ def mock_det():
|
||||
mock_cl.get_pv = MockPV
|
||||
mock_cl.thread_class = threading.Thread
|
||||
with mock.patch.object(PilatuscSAXS, "_init"):
|
||||
det = PilatuscSAXS(
|
||||
name=name, prefix=prefix, device_manager=dm, sim_mode=sim_mode
|
||||
)
|
||||
det = PilatuscSAXS(name=name, prefix=prefix, device_manager=dm)
|
||||
patch_dual_pvs(det)
|
||||
yield det
|
||||
|
||||
@@ -61,7 +49,7 @@ def test_init_detector(mock_det, trigger_source, detector_state):
|
||||
Validation upon setting the correct PVs
|
||||
|
||||
"""
|
||||
mock_det.custom_prepare.initialize_detector() # call the method you want to test
|
||||
mock_det.custom_prepare.on_init() # call the method you want to test
|
||||
assert mock_det.cam.acquire.get() == detector_state
|
||||
assert mock_det.cam.trigger_mode.get() == trigger_source
|
||||
|
||||
@@ -96,6 +84,8 @@ def test_init_detector(mock_det, trigger_source, detector_state):
|
||||
],
|
||||
)
|
||||
def test_stage(mock_det, scaninfo, stopped, expected_exception):
|
||||
path = "tmp"
|
||||
mock_det.filepath_raw = path
|
||||
with mock.patch.object(
|
||||
mock_det.custom_prepare, "publish_file_location"
|
||||
) as mock_publish_file_location:
|
||||
@@ -105,9 +95,7 @@ def test_stage(mock_det, scaninfo, stopped, expected_exception):
|
||||
mock_det.device_manager.add_device("mokev", value=12.4)
|
||||
mock_det.stopped = stopped
|
||||
with (
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "prepare_detector_backend"
|
||||
) as mock_data_backend,
|
||||
mock.patch.object(mock_det.custom_prepare, "prepare_data_backend") as mock_data_backend,
|
||||
mock.patch.object(
|
||||
mock_det.custom_prepare, "update_readout_time"
|
||||
) as mock_update_readout_time,
|
||||
@@ -127,11 +115,13 @@ def test_stage(mock_det, scaninfo, stopped, expected_exception):
|
||||
)
|
||||
assert mock_det.cam.num_frames.get() == 1
|
||||
|
||||
mock_publish_file_location.assert_called_with(done=False)
|
||||
mock_publish_file_location.assert_called_with(
|
||||
done=False, metadata={"input_path": path}
|
||||
)
|
||||
|
||||
|
||||
def test_pre_scan(mock_det):
|
||||
mock_det.custom_prepare.pre_scan()
|
||||
mock_det.custom_prepare.on_pre_scan()
|
||||
assert mock_det.cam.acquire.get() == 1
|
||||
|
||||
|
||||
@@ -185,7 +175,9 @@ def test_publish_file_location(mock_det, scaninfo):
|
||||
mock_det.filepath = scaninfo["filepath"]
|
||||
mock_det.filepath_raw = scaninfo["filepath_raw"]
|
||||
mock_det.custom_prepare.publish_file_location(
|
||||
done=scaninfo["done"], successful=scaninfo["successful"]
|
||||
done=scaninfo["done"],
|
||||
successful=scaninfo["successful"],
|
||||
metadata={"input_path": scaninfo["filepath_raw"]},
|
||||
)
|
||||
if scaninfo["successful"] is None:
|
||||
msg = messages.FileMessage(
|
||||
@@ -405,6 +397,8 @@ def test_prep_file_writer(mock_det, scaninfo, data_msgs, urls, requests_state, e
|
||||
|
||||
@pytest.mark.parametrize("stopped, expected_exception", [(False, False), (True, True)])
|
||||
def test_unstage(mock_det, stopped, expected_exception):
|
||||
path = "tmp"
|
||||
mock_det.filepath_raw = path
|
||||
with (
|
||||
mock.patch.object(mock_det.custom_prepare, "finished") as mock_finished,
|
||||
mock.patch.object(
|
||||
@@ -418,7 +412,9 @@ def test_unstage(mock_det, stopped, expected_exception):
|
||||
else:
|
||||
mock_det.unstage()
|
||||
mock_finished.assert_called_once()
|
||||
mock_publish_file_location.assert_called_with(done=True, successful=True)
|
||||
mock_publish_file_location.assert_called_with(
|
||||
done=True, successful=True, metadata={"input_path": path}
|
||||
)
|
||||
assert mock_det.stopped is False
|
||||
|
||||
|
||||
|
||||
@@ -0,0 +1,9 @@
|
||||
def patch_dual_pvs(device):
|
||||
device.wait_for_connection(all_signals=True)
|
||||
for walk in device.walk_signals():
|
||||
if not hasattr(walk.item, "_read_pv"):
|
||||
continue
|
||||
if not hasattr(walk.item, "_write_pv"):
|
||||
continue
|
||||
if walk.item._read_pv.pvname.endswith("_RBV"):
|
||||
walk.item._read_pv = walk.item._write_pv
|
||||
Reference in New Issue
Block a user