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Rosetta_3.15 #15

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agosti_j commented 2025-10-17 08:47:49 +02:00
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The Rosetta software suite includes algorithms for computational modeling and analysis of protein structures. It has enabled notable scientific advances in computational biology, including de novo protein design, enzyme design, ligand docking, and structure prediction of biological macromolecules and macromolecular complexes.

https://github.com/RosettaCommons/rosetta

Version 3.15:

The Rosetta software suite includes algorithms for computational modeling and analysis of protein structures. It has enabled notable scientific advances in computational biology, including de novo protein design, enzyme design, ligand docking, and structure prediction of biological macromolecules and macromolecular complexes. https://github.com/RosettaCommons/rosetta **Version 3.15:** - Downloaded from https://downloads.rosettacommons.org - Compiled for x86-64 and ARM64
agosti_j added 2529 commits 2025-10-17 08:47:50 +02:00
initial commit 1671b3026f
ippl, parmetis, trilinos: compiler added to run-time dependencies 211ea7683c
lib.bash: error() added 8afe2342a6
libem.bash: --with-*=* args implemented, usage() added, use bash 3 compliant string to upper 0c987156c9
lua build added 6d67927fd1
mpc 1.0.2 added b86b784a86
libem.bash: EM_MODULEROOT_PATH renamed to MODULEROOT_PATH e2e68c6849
MODULEROOT_PATH renamed to MODULEPATH_ROOT (this is what Lmod uses) ddf5e9ff3b
confif/versions.conf: default version for Lua added; minor changes 6b9f2bfe65
ignore file added 56bcd79de1
em.add_to_family is now used in all build scripts 344794aaba
em.cleanup_src() added, required for modules which must be build in the src directory 089d5af181
libem.bash: build unavailable (build) dependencies 9babfa242e
default version of mpc set to 1.0.2 a2d7a1d63c
scripts/family.build: script to compile familes added d87afe6b9f
lib/libem.bash: bugfix in building dependencies; remove source directory in em.cleanup_src() c960e2d7ff
parmetis: cleanup source after everything is done 95899cea1c
project documentation added ddfe3143e7
first review 3c8fb99bf7
fixed wrong extension of OPAL tar-ball cc8329fbf3
libem.bash: really cleanup src in em.cleanup_src() 390c900657
Lmod added f8fce0f71d
Updated Environment_Modules_Project.org following the suggestions by Achim fc5c0fbd21
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 5782da5ba3
- Spell checking c45e2133e0 
- DONE items
Edited Environment_Modules_Project.org up to the section Multiple Locations according to the meeting on 2014-04-30 460b6973e7
new family names set in build scripts 6cac7ef1dd
libem.bash: familiy names adapted to new naming schema 2c930cd4c6
config: familiy names adapted to new naming schema 76c1aff350
config: familiy names adapted to new naming schema 8919924f4b
Modules.build: family changed to Tools 0ea2f4b8e0
Edited Environment_Modules_Project.org according to the meeting on 2014-04-30 0953de8b52
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment a4a0364854
config for family Libraries added f3ce4404b2
libem.bash: handling of family Libraries added 508316357f
gmp, mpc, mpfr moved to family Libraries d12e1aabf1
giflib, libungif, tiff added 562223d8e5
giflib, libungif, tiff added 27179b22f8
family.build: greping family names enhanced 4d766c56b9
emacs.build: libungif, tiff added to build dependencies b3962b8854
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 953c2908ce
libem.bash: bugfix in setting the prefixes in family HDF5_serial 884b30a751
versions.conf: H5root added 9147ca7cb5
H5root: do not compile with MPI 1759f9bb1d
versions.conf: Modules version added d2ec6bc43f
libem.bash: die if family is not set 2862fb01b8
gcc.build: use Libraries added 0ab9b60148
simplified family configuration 90c5d6958b
emacs.build: fixed build dependencies for Mac OS X 5f4df9c581
libem.bash: handling of family System added, bugfix 34970c70d9
filebench: added 876f2d5d79
configuration of default versions simplified ceef36ec65
patchelf added 6cd90ff7e7
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment cb23c34654
lib/libem.bash: em.prep() renamed to _prep(), cleanup, bugfixes 7a56dffe4e
lua, Lmod: skip build ac39456d32
family.build: bugfixes 6de357f723
filebench, patchelf: supported on Linux only 6ae2c7ba8c
all modules in MPI: set compiler variables like CC in em.configure() 7ab284a1f4
versions.conf: patchelf added b51df65158
all.build: die if EM_ETCDIR is not set (MODULESHOME is not sufficient) a99a7d644b
H5hut.build: set MPI compiler environment variables f0039c418e
H5root.build: hdf5_serial added to run-time dependencies 0d479f14fb
fsstress added c301894aa3
fsstress added 8beba670cf
links to default family configurations removed 4b22b6a858
ignore file added to config/families.d 9929eac6cc
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment d233fcb1eb
lib/libem.bash: set link according new directory structure 0fa13e175d
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 49af872bb7
libem.bash: ln -h is not supported on linux 8ea27d4ae1
Modules.build: set USE_INTERP_ERRORLINE, otherwise it will not compile with tcl 8.6 cf252330e0
libem.bash: purge modules only if module is available d4fe0f59bd
libem.bash: exit with warning if default family configuration is missing 938db5f56d
Python.build: change family to 'Programming' e654427962
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 57cd50fb8d
libem.bash: 9a24bf0f98 
- installation of doc-files simplified
- restrict build of module to supported compilers is now possible
- cleanup
OPAL.build: build with gcc/4.7 only 85d0e49a60
trilinos.build: e7fbeb0081 
- Amesos2 enabled
- build with OpenBLAS
OpenBLAS/0.2.9: added b398563367 
SuperLU_DIST/3.3: added
UMFPACK/5.6.2: added
netcdf/4.3.2: added
trilinos/11.8.1: new version
libem.bash: install build-script to doc-directory by default 22b668d4da
boost: added 5a83593ac8
boost.build: typo in build dependencies fa71e5a71f
Python.build: set some symbolic links in bin and include to make other modules happy 51c8b4c52d
boost: re-pack tar-ball: '._*' files removed 471c4dfc1d
openmpi: update to version 1.8.1 082218c51f
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment d35b773715
OpenBLAS: bugfix in build script, re-pack tar-ball 977f02c514
family.build: bugfix 98dc1108a6
OpenBLAS: use openmp threads 6c14bf58ee
gcc: version 4.8.3 and 4.9.0 added 0c9e3e38e5
libem.bash: cleanup, bugfix in '-with-hdf5_serial' handling 444a3c8415
libem.bash: read configuration moved to _setup_env() ceb77c4d19
all.build: pass arguments to family.build 17ae408957
libem.bash: environment variables used to define the familes must be defined at the very beginning, this cannot be done in _setup_env() 0b97f07b88
hdf5.build: use function em.set_docfiles() to set files going to installed in the doc-directory of the module 0f5cb8fbe1
versions.conf: SuperLU added, new root version 4ff4d65a54
gcc.build: use 'em.set_docfiles()' 7bcde6c147
root: update to version 5.34.19 ad9bf7fe0f
SuperLU: added d063fe30d0
BoxLib: added; boost: explicit disable MPI f6d571d7ee
Boxlib: doc-files added 2b3b96ae8a
hdf5: bugfix 611e078d4c
root: disable OpenGL due to problems on Mac OS X 1f3c0fc48d
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 303752dcd5
SuperLU: fix family (-> Compiler), install doc-files via 'em.set_docfiles()' bd0fc3876a
nmap: added 6a117076da
libem.bash: now supports releases ca37884f1b
libem.bash: bugfixes cdb57d936f
H5root: moved to family 'Compiler' 86a48e423a
ippl.build: use 'em.set_docfiles()' to define files going into doc-dir 46e82b12be
trilinos.build: bugfix; use 'em.set_docfiles()' to define files going into doc-dir 715ca70ab6
OpenBLAS: build scripts for module with/without OpenMP 322b8e1d7b
ippl: update to version 1.1.1 6ddb384646
trilinos: bugfix 91602645fe
nmap: tar-ball wasn't bzip'd 170cd0b6bb
libem.bash: prefix EM_ changed to MODULE_ for all variables related to the build system, the prefix EM_ is reserved for the environment modules itself a04664c61b
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 21c8a650d2
Lmod.build: removed* c79fb054c2
libem.bash: EM_BINDIR replaced 84f0663b33
Modules.build: EM_BINDIR replaced b51f37afaa
libem.bash: bugfix in sourcing environment.bash 7605c35a59
global: added 8e93032ed5
libem.bash: towards support of releases 210cedf501
dialog: added 897aae927d
gcc-4.9.1: added 0a3d51e76b
libem.bash: bugfixes in support of releases 6934661e1a
libem.bash: fixes in supporting differnt releases 21bc60f8c7
libem.bash: split setup of environment in a general and a module specific part ac9fb2bf5f
libem.bash: set release to \'unstable\' on first time compilation 499a69be55
gcc.build: pkgversion changed 41bbe3611c
trilinos: Mac OS X ._something files removed from tar-ball 04e2607e9e
gcc: set CXX in build script a721014a06
openmpi: use 'em.set_docfiles()' cd1afd767c
OpenBLAS_OMP: added; trilinos: new version set b03daa2849
trilinos: 11.10.2 tar-bal added 0bf0df96bc
lib.bash: info() and debug() added be7b0ba7f5
libem.bash: OS-dependend post-install added (work-around the multilib problem); bugfixes c8d2ae8676
libem.bash: conflict resolved d9dc8008a9
openmpi: version 1.8.2 added ef16f18461
gcc: version 4.7.4 added f37c5e0e37
libem.bash: more verbose output 87fd09646e
trilinos: OpenBLAS and parmetis added to run-time dependencies c2f6dcf420
deprecated function em.install_doc() replaced 89ad59a8f4
bash: module added 64d780db0e
versions.conf: dialog version added 3694758f79
libem.bash: create DOCDIR in em.install_doc() 2dd22a7710
SuperLU_DIST: set (PAR)METISLIB in make.inc, add OpenBLAS and parmetis to build- and run-time dependencies 483957a0a7
SuperLU_DIST: changes merged 1acd15702a
BoxLib: wrong extension of tar-bal fixed d2631d3cf8
tar-balls: Mac OX ._ files removed c7927f21c3
hdf5: update to version 1.8.13 50c22fe56d
ippl: update to version 1.1.2 6528f6f0d3
trilinos: add -fpermissive CFLAGS for CXX 85fa81f0b8
libem.bash: fixes improvments in handling releases 28101f7305
lib.bash: bugfix in debug(); log everything to stderr 07f2c57b9f
{boost,gsl,hdf5_serial}.build: runtime-dependencies fixed 6ea1aae99f
versions.conf: ippl updated to 1.1.2 e9b33c4932
libem.bash: specify modules to pre-load with --with=; this make --with-something= obsolete 7754412d8c
change_release: added cde1881d87
change_release: opt '--from-release' removed; '--to-release' renamed to '--release' a6e3a50345
libem.bash: cleanup, bugfix in build of dependencies a5ad831c94
libem.bash: bugfixes in post-installation 5584f9c85b
SuperLU_DIST.build: cleanup source added 7eb53f9d9b
OPAL.build: moved to family MPI, add gcc/4.8 to supported compilers 3de7360f79
libem.bash: with new BASH we have to re-init the module environment; bugfix in _set_link() d44ad20765
OPAL: version 1.3.0beta3 added 78c308f7ff
OPAL: version 1.3.0beta1 and 2 added 09e0b5d384
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 479031d50e
lib/lib.bash: use PSI_DEBUG not EM_DEBUG 180afa5637
scripts/Modules.build: link static, remove source of environment.bash 79bf72ba1d
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 69d6bf6ea3
lib/libem.bash: now supports module name with minus and OS dependend tar-balls 840fb7daac
anaconda-python27 added 7a4f36bc83
anaconda-python27 renamed to psi-python27 5800ae3949
anaconda-python27 renamed to psi-python27 ff62316f23
Tcl/Tk sources added 6085f5d73a
Tcl: added, module include Tcllib 80c08f5e8c
Modules.build: use our own Tcl module 9242006625
libem.bash: bugfix in writing run-time dependencies 6d88697bac
Tcl: build static libraries eacb2f7447
Modules.build: fix issue with static Tcl e521da5f3e
Modules.build: build without X support eef6b108cf
Emacs: version 24.4 added 93149c45a3
Tcllib: removed, is part of our Tcl distribution 00c21ffe72
scripts/emacs.build: module use Libraries added 7b2de56c97
scripts/emacs.build: scripts to Emacs added fd58094727
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment e5f84f93d0
scripts/emacs.build: bugfix: create bin directory before writing scripts f3618369ff
bash: new module for version 4.3.30 3c9bf4f96b
libem.bash: changes to support new release implementation 7895095781
OPAL.build: boost added to build dependencies 3ec01be1ab
scripts/OPAL.build: add use of unstable modules 64da54f6d8
config/versions.conf: set ippl 1.1.3 as default f966892be4
lib/libem.bash: bugfix in setting release f00bf7d041
OPAL 1.3.0 tar-ball added 7622314660
scripts/OPAL.build: do NOT set CC and CXX to MPI wrappers 2b53fbcc8d
scripts/trilinos.build: remove setting of CC, CXX and co bb5c385901
scripts/unison.build: added 8baf379c9f
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 582bf1e498
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 4fd8253516
OPAL 1.3.0: new tar-ball a847e249fc
tar-balls updated 5a8c719128
scripts/gtest.build: added 3ae93db04d
config/versions.conf: OPAL default version set to 1.3.0 8dd3d02331
opt-pilot: build-script and tar-ball added 9cfa56c513
OPAL: final 1.3.0 tar-ball e33094b584
unison: tar-ball added ac1310dda7
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 7d29c3c6c5
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 1d4a39745d
script/optPilot.build: renamed, old name was opt-pilot 1aa5fef253
all build scripts moved to a sub-directory according their name d9be0b6af2
getopt, gettext added bcb6d75bcb
emacs backup files added to .ignore e1b0cd1055
Bootstrap code added; put everything into Pmodules/VERSION f9786954b4
config/pmodule_version.conf: added f9f3be25df
scripts/System/getopt.build: added eed7d9e90e
changes to support easy bootstraping; re-orginazation of build scripts 62181b761b
changes to support easy bootstraping; re-orginazation of build scripts 074dda7b9e
lib/libem.bash: change code to support bootstraping 52d0dd13cc
config/versions.conf: various versions added 2a04faca32
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment f80ee16cd4
lib/libem.bash: do not source Pmodules profile while bootstrapping 4937b1d35e
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment c6abda1509
config/families.d/openmpi-1.8.2: added 2f15e6c216
bash_completion: use PMODULES_HOME not MODULESHOME b8bbf8cf87
modulerc: not used any more, deleted d4293e45ae
scripts/Bootstrap/.gitignore: added 8c7d00dcf4
scripts/Bootstrap/bash: fixes and cleanup 120f5e1ff8
scripts/Bootstrap/modulecmd.bash: family.conf is not required any more, depth is computed on the fly f45609121e
scripts/Bootstrap/{build_pmodules.sh,install_pmodules.sh}: bugfixes d2e555ad96
scripts/Bootstrap/{environment.bash,profile.bash}: added 36d252b551
lib/libem.bash: available releases are now defined in environment.bash b55f1a60f1
config/pmodules_version.conf: export variables 67e3d5c7c1
major reorganization; updates to versions; fixes 51792a80f2
.gitignore: Downloads dir added 7e2b76dfe5
config/families.d/openmpi-1.8.2: added f083ca4194
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment ef6875a3e5
System/unison/build: file moved c4003e437d
lib/libem.bash: bugfixes 6c8e2c9fa9
Bootstrap: reorganization, bugfixes 7690327e9e
environment.bash, profile.bash: fixes, more verbose error messages e7127caf4e
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 96011a8873
Bootstrap/install_pmodules.sh: install environment.bash and profile.bash a8edf0a2b5
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 3f19aa36c5
Bootstrap/Pmodules/init_local_env.bash: adapted to recent changes of Pmodules 4674e60e60
scripts/Bootstrap/Pmodules/init_local_env.bash: almost rewritten f15209ee28
scripts/Bootstrap: modulecmd.bash renamed to modulecmd.in 1aa3367ad7
Bootstrap/Pmodule/init_local_env.bash renamed 5c797ba005
Bootstrap/Pmodules/modulecmd.in: minor fix in usage output 37cd92fad3
ignore file edited 496201c2ea
Bootstrap/Pmodules/modulecmd.tcl: added but still unused 2a8cd068ea
Bootstrap: first usefull version of modmanage afa18de45e
scripts/Bootstrap: introduce libpmodules.bash; function to sync modules added 8ee8c3d954
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 612040c85f
Bootstrap/Pmodules/modmanage.in: try to install module- and release-file only if they exist 07e31a1855
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment c9460c2e1f
lin/libem.bash: output modules loaded via --with a7cf676c70
remove Downloads from repository c543f9806f
remove Downloads from repository ad05aee01e
Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment 01da16a738
old and obsolete doc removed 84f4348597
scripts/Bootstrap/Pmodules/modmanage.in: bugfixes in init sub-command 35fe97042f
config/Pmodules.conf: renamed and definitions for default compilers, MPI implementations and HDF5 versions added 9473e50df0
scripts/HDF5/build_all_variants: added 04c5b8fabd
scripts/Bootstap: adapted to new Pmodules configuration file name ee4ac2a15f
scripts/Bootstrap/Pmodules/modmanage.in: bugfixes in dry-run of init 77d0ab6736
scripts/Compiler/build_all_variants: added ab61b6035b
conf/familes.d: removed 9a4b7cd164
lib/libem.bash: sourcing families.d/*.conf not required any more bcc443342b
scripts/Tools/gnuplot/build: README-1ST removed from doc-files d87857506e
scripts/Bootstrap/Pmodules/modulecmd.in: indentation fixed 8f3edefc08
gromacs: build script added 8b399cf14d
Merge branch 'master' of gitorious.psi.ch:pmodules/src 6a9df7258f
file for csh support added, still not usable 9e7255fa0a
Merge branch 'master' of gitorious.psi.ch:pmodules/src c18c7b80d2
config/Pmodules.conf: family configuration added to conf file 76d98ba4e7
config/versions.conf: bump cmake version to 3.1.3 dfde0944dc
scripts/MPI/build_all_variants: added a7e9408d66
Merge branch 'master' of gitorious.psi.ch:pmodules/src 568f3d791c
scripts/Bootstrap/Pmodules/modmanage.in: bugfix f432e05df9
scripts/Bootstrap/Pmodules/modulecmd.in: bugfix: get_family() now returns empty string, if no modulefiles are installed 8468c84b76
scripts/Bootstrap/Pmodules/modmanage.in: sub-command install added, not yet functional 6952b1a732
scripts/Bootstrap/Pmodules/modulecmd.in: option '--print-modulefiles' added to search sub-command ee289e156a
Merged with newest version of Achim 0296400ffa
scripts/Bootstrap/Pmodules/libpmodules.bash: 'check_modules_env()' splitted into 'check_pmodules_env_vars()' and 'check_pmodules_directories()' 78af18063c
scripts/Bootstrap/Pmodules/modmanage.in: create dir '/modulefiles'; add installation source to environment.bash 543f7fa523
scripts/Bootstrap/Pmodules/modulecmd.in: '--src=<dir>' option added to search sub-command c537be0ed9
scripts/Bootstrap/Pmodules/modulecmd.in: redirect output of sub-command 'search' to stderr if option '--print-modulefiles' is used 2c2a4f669d
scripts/Bootstrap/Pmodules/modmanage.in: sub-command 'install' implemented 2fb13788e5
scripts/Bootstrap/Pmodules/environment.bash: renamed 9a745ecfc8
config/Pmodules.conf: PMODULES_VERSION bumped to 0.99.2 4faf9f7d29
scripts/Bootstrap/install_pmodules.sh: run 'environment.bash.in' throu sed 025180d9fc
scripts/Bootstrap/Pmodules/bash: set MODULEPATH if empty only; remove old PMODUES_HOME in PATH and MANPATH; legacy variables MODULE_VERSION, MODULE_VERSION_STACK and MODULESHOME removed 30e636c030
scripts/Bootstrap/Pmodules/environment.bash.in: hardcoded version replaced with @PMODULES_VERSION@ 0366201a0b
ignore files edited 2172a047c1
config/Pmodules.conf: family configuration removed, did not work properly anyway 861ab772be
lib/libem.bash: load modules specified with '--with=' while sourcing the library cc7a8100ac
scripts/Bootstrap/Pmodules/bash: run module purge and re-initialize everything 6a7ae8ed52
lib/libem.bash: unset CDPATH added; fix problem with --bootstrap 4f3d3c812a
scripts/Bootstrap/Pmodules/modmanage.in: unset CDPATH added 406536df53
scripts/Bootstrap/Pmodules/modulecmd.in: unset CDPATH added; print message in sub-command 'load' if no module specified a777b1240c
scripts/Bootstrap/compile_pmodules.sh: print message and exit, if something failed to compile 8a800c602f
scripts/Bootstrap: all build dependencies removed 907ab0d050
scripts/Bootstrap/Pmodules/modmanage.in: in sub-command 'init': option '--version=' added, with this option you specify the version of Pmodules to be sync'ed 247d9431b5
config/versions.conf: default version of ippl changed 1b6781702d
scripts/Bootstrap/Modules/build: bugfix: use PMODULES_VERSION to set TCL_DIR 4fc10233c6
scripts/Bootstrap/Pmodules/modmanage.in: in sub-command 'install': options '--dry-run' and '--force' added; do not re-sync existing moules if not forced a85c5070ca
Merge branch 'master' of gitorious.psi.ch:pmodules/src 731805801c
scripts/Bootstrap/Pmodules/modmanage.in: bugfix in sub-command 'install' d722a60c89
lib/libem.bash: do not overwrite versions set with '--with=' with default versions defined in 'config/versions.conf' 0ad320508b
scripts/Tools/git/build: added bde7be36df
scripts/MPI/OPAL/with: added ad664353cd
lib/libem.bash: do not load modules twice while loading build dependencies d148fbbdf7
lib/libem.bash: family 'OPAL' added; load modules listed in file 'with_modules', if exist f42d8c41a4
optPilot moved to family 'OPAL' and renamed to 'opt-pilot' e928d9984b
scripts/MPI/OPAL/with_modules: renamed 99bc0f1e67
lib/libem.bash: bugfix in environment cleanup 9523996b8a
scripts/Bootstrap/Pmodules/libmodules.tcl: add debug output if PREFIX does not exist 40e0143b9f
scripts/HDF5/build_all_variants: exit if a build failed c2ffa54b91
scripts/HDF5/H5hut/build: disable vtkconvert 8d8925c903
scripts/HDF5_serial/build_all_variants: added 3b75bd4d75
config/Pmodules.conf: (P)MODULES_VERSION removed 9cb136ccc4
scripts/Bootstrap: read (P)MODULES_VERSION from Pmodules_version.conf 9e3f159bfc
scripts/Bootstrap: read (P)MODULES_VERSION from Pmodules_version.conf 15815f6e6a
scripts/Programming/Tcl/build: compile with system compiler 12d6f2f532
scripts/Programming/Tk/build: added 87ffe565a1
scripts/Tools/git/build: run-time dependencies 'Tcl' and 'Tk' added 38f3a237f2
scripts/Tools/git/with_modules: added 4f9229e8f1
scripts/HDF5/H5hut/build: 'vtk' removed as build dependency ebc2a121c5
scripts/System/nmap/build: setting release removed b4652a6d76
Merge branch 'master' of gitorious.psi.ch:pmodules/src dfcb0d1051
lib/libem.bash: bugfix in 'em.cleanup_build()' b6021f80a4
scripts/MPI/build_all_variants: exit on error 3aae40abcd
scripts/Tools/git/build: use bar '--with-tcltk' 2e45aa799d
lib/libem.bash: 0ba06aa74b 
- bugfixes in setting up family HDF5_serial
- skip call of em.cleanup_build() if nothing was build
scripts/HDF5_serial/build_all_variants: 308079c18d 
- exit if a build failed
scripts/Bootstrap/Pmodules_version.conf: bumped version to 0.99.2 2fa3d39e21
scripts/Bootstrap/Pmodules/modulecmd.in: cleanup 2d0b29ec5d
scripts/Bootstrap/Pmodules/libpmodules.bash: df9adc8251 
- set 'bindir' if not set
- '\n' removed from info() and error()
- die() always prints to stderr
- get_abspath(), append_path(), prepend_path(), remove_path() added
scripts/Bootstrap/Pmodules/modulecmd.in: 6eeb0a2f69 
- cache 'FAMILES' and 'HIERARCHY_DEPTHS'
- usage output reviewed
- append_path (), prepend_path(), remove_path() moved to libpmodules
- is_modulefile() added (testing shebang)
- argument/option handling reviewed, using 'getopt' now for all sub-commands
- in sub-command 'load': testing whether a module is loadable improved
- use 'info' for most output
- bugfixes
scripts/Bootstrap/Pmodules/bash: 0f08af57cb 
- bugfix in handling sub-command without arguments
scripts/Bootstrap/Pmodules/modulecmd.in: 6e7025cad8 
- bugfixes
- minor changes
Merge branch 'master' of gitorious.psi.ch:pmodules/src a519acdac0 
Conflicts:
	scripts/Bootstrap/Pmodules/libpmodules.bash
	scripts/Bootstrap/Pmodules/modmanage.in
Merge branch 'master' of gitorious.psi.ch:pmodules/src 14f0356774 
Conflicts:
	scripts/Bootstrap/Pmodules/libpmodules.bash
Merge with Achims version cee56109cd
Make dialog work again with the changed environment setup 23c5586a28
- Filter out .release files f265261aef 
- Exit with correct return value in non library mode
Make modmanage sync work with new module environment setup 3d47e6b3f5
Bugfix: first line was mistakingly overwritten with it's substitution 60859b9c40
scripts/Bootstrap/Pmodules/modmanage.in: 8c418bbf7a 
- header of delete_module() fixed
- in function subcommand_sync():
    - use value of PMODULES_INSTALL_SOURCE for src_prefix if not
      specified on command line
scripts/Bootstrap/Pmodules/modulecmd.in: 317775e872 
- bugfix in subcommand_search: argument --src was not handled correctly
scripts/Bootstrap/Pmodules/bash: e5c7aeb859 
- bugfix: accept tilde and slash as first character of an argument
scripts/Bootstrap/Pmodules/modulecmd.in: 90c6f1a602 
- bugfix in sub-command use:
	- PSI_LOADEDFAMILIES was not updated
script/Bootstrap/Pmodules/bash: d1f0209416 
- expose less env.vars to the user, cache them in PMODULES_ENV
scripts/Bootstrap/Pmodules/environment.bash.in: b81a326f8b 
- PSI_RELEASES renamed to PSI_DEFINED_RELEASES
- set PSI_DEFAULT_RELEASES instead of PSI_USED_RELEASES
- PSI_USED_RELEASES renamed to USED_RELEASES (and saved in PMODULES_ENV)
scripts/Bootstrap/Pmodules/modulecmd.in: 346798015e 
- export vars via function 'export_env()'
- PSI_RELEASES renamed to PSI_DEFINED_RELEASES
- bugfixes
- sub-command 'clear' fixed
- sub-command 'whatis' partially fixed
scripts/Compiler/mpich/build: 258a795f54 
- added
scripts/Tools/emacs/build: 6cbe217bf3 
- create $PREFIX, make expect the existance of it
Pmodules: c7721ab60d 
- use the term 'group' instead of 'family'
- prefix 'PSI_' changed to 'PMODULES_' for several shell vars.
binutils added 5990ba9a1d
Merge branch 'master' of gitorious.psi.ch:pmodules/src 5dba269ca3
lib/libem.bash: 7161682cff 
- core to find tarball of package moved to function and improved
scripts/Bootstrap: a56b83e44a 
- coreutils added, we need a unique base64
script/Bootstrap/Pmodules/modulecmd.in: 21e9b9720f 
- use our own GNU base64
emacs/build: 575704d8ec 
- configure with out libjpeg if OS is Linux
Merge branch 'master' of gitorious.psi.ch:pmodules/src 214f98fcf9
System/mdtest: added 19c0c13f23
Bootstrap/gettext/build: --with-pic=yes added to configure call b6820c5687
scripts/Bootstrap/Pmodules: c84417282f 
- bugfixes in modulecmd.in
- bugfixes in modmanage.in
scripts/Bootstrap/Pmodules/modulecmd.in: bugfix in sub-command 'unuse' 6c610714ad
scripts/Tools/emacs/build: install Emacs.app if OS is Darwin 524d4b055c
scripts/Bootstrap/Pmodules/modulecmd.in: bugfix in get_hierarchy_depth() 51005f7adb
scripts/Bootstrap/Pmodules/modulecmd.in: in header of sub-command 'search': 'Family' replaced by 'Group' c51908da41
scripts/Bootstrap/Pmodules/modmanage.in: set PMODULES_VERSION in config/environment.bash to version of script; print usage if called without args b8fb76cb1c
scripts/Bootstrap/Pmodules/modmanage.in: add some comments 0a2ee2e1ba
scripts/Bootstrap/Pmodules/libpmodules.bash: 8665107992 
- in function log(): redirect output to '1>&$fd' not '/dev/fd/$fd',
  writing to '/dev/fd/X' might run into permission problems
scripts/Bootstrap/Pmodules/modmanage.in: 1aa03ce303 
- in function sync_modules(): do not sync module template files
scripts/MPI/gromacs/build: compile without GPU a612e4570e
lib/libem.bash: 8bdfe81e12 
- support for extensions in build directories added
- cleanup of build can be disabled via command-line opt
scripts/Compiler/atlas/build: 88ed7b8d8a 
- added
scripts/MPI/OPAL/OPAL.14: 1e28c14623 
- added
scripts/Programming/binutils: 5bff52c91f 
- do not compile with system compiler
scripts/Bootstrap/Pmodules/environment.csh: f3b6b2fa7d 
- renamed to 'environment.csh.in'
scripts/Bootstrap/Pmodules/modmanage.in:
- renamed to 'modmanage.bash.in'
scripts/Bootstrap/Pmodules/modulecmd.tcl:
- removed
config/versions.conf: 7c878cfd32 
- coreutils added
scripts/MPI/cpmd: added 5218a2ce78
scripts/Bootstrap/bootstrap.sh: bugfix 8781da4c53
scripts/Bootstrap/install_pmodules.sh: ccf5f2b9ba 
- do not cleanup after build dir
- specify bash verion
scripts/Bootstrap: a42cdf4645 
- PSI_ variables renamed
- new modulefiles layout implemented
- autoload libmodules.tcl
- use of term 'group' instead of 'family'
lib/lib.bash:lib/libem.bash: 8ccc6c533e 
- PSI variables renamed
- adapted to new modulefiles layout
- use term 'group' instead of 'family'
lib/libem.bash: 8d753cbd91 
- renamed to 'libpmodules.bash'
lib/libem.bash: e26a9fae7f 
- symlink for backward compatibility
- em.xyz renamed to pmodules.xxy b129a8d05d 
- underscore removed as prefix of function names
- keyword function removed
lib/lib.bash: fbcca02c1c 
- use 'readlink -f' in 'abspath()'
lib/libpmodules.bash: cleanup 6df1aadfa0
scripts/Bootstrap/Pmodules/modulecmd.in: 154d578ecb 
- bugfix in 'subcommand_use()'
scripts/Bootstrap/Pmodules/modulecmd.in: bugfixes in subcommand_unuse() ab9edd13b0
lib/libpmodules.bash: missing pmodules.set_runtime_dependencies() added 66accd020c
Merge branch 'master' of gitorious.psi.ch:pmodules/src e66234d640
lib/libpmodules.bash: c3be031e07 
- set PATH after sourcing lib.bash
scripts/Bootstrap/compile_pmodules.sh 364270b6c7 
- cleanup $PMODULES_DIR before compiling
scripts/Bootstrap/Pmodules/csh: 7ceec6e288 
- set correct exec_prefix
- do not set MODULESHOME
scripts/Bootstrap/Pmodules/environment.csh.in fde9205f16 
- fixes
- adapted to new variable names
scripts/Bootstrap/Pmodules aba087f849 
- do not read profiles
- tcsh output added to 'export_env()'
- supress errors from 'typeset' in 'save_env()'
- use 'export_env()' to instead of 'echo'
- add global declaration of PMODULES_DEFAULT_GROUPS
  and PMODULES_DEFAULT_RELEASES to 'pmodules_init()'
- add 'tcsh' as supported shell
scripts/Bootstrap/Pmodules_version.conf 65aad9aaf5 
- set version to 0.99.4
config/versions.conf: 6071547d0f 
- set default Pythion version to 3.4.3
lib/libpmodules.bash: aea0cd8d5c 
- read version from 'Pmodules_version.conf, if bootstrapping
script/Bootstrap/Pmodules/modulecmd.in: e46ed0b484 
- fix bash glob issue with [A-Z]* pattern
scripts/Compiler/OpenBLAS/build: b63493f850 
- add Intel C support
scripts/Compiler/boost/build: f1a3e0798d 
- add Intel C support
scripts/MPI/SuperLU_DIST/build: 9ee5311826 
- add Intel C support
scripts/MPI/trilinos/build: 24996800fa 
- -fpermissive removed frm CXX_FLAGS
- set C++ standard to C++11
scripts/OPAL/opt-pilot/build: 5077262de9 
- ippl removed as dependency
scripts/OPAL/opt-pilot/with_modules: 2df04b8a3c 
- ippl removed
- OPAL version changed to 1.4.0rc1
Merge branch 'master' of gitorious.psi.ch:pmodules/src 25d15181cf
scripts/Bootstrap/Pmodules/modulecmd.in: f08150143d 
- '--norc' removed from shebang
scripts/Bootstrap/Pmodules/profile.bash: 5d87ddc1b2 
- bugfix PMODULES_PREFIX has been renamed to PMODULES_ROOT
scripts/Bootstrap/compile_pmodules.sh: dfb42a9748 
- cleanup
scripts/MPI/hdf5/build: ac53c5e2b3 
- building Fortran bindings enabled
lib/lib.bash: d241a07403 
- read_versions() added
scripts/Bootstrap/Pmodules_version.conf: 7c7cf6c7dd 
- new, language independent format
lib/libpmodules.bash: 49cb199957 
- support for new format of Pmodules_version.conf
scripts/Bootstrap/compile_pmodules.sh fee0947978 
- adapted to new format of Pmodules_version.conf
- conditional compiling
scripts/Bootstrap/install_pmodules.sh: a5376bbd65 
- adapted to new format of Pmodules_version.conf
scripts/libpmodules.bash: 5dcf4a5668 
- support for target 'prep', 'configure' etc added
- support for version specific 'with_modules' files added
- bugfix in setting PMODULES_VERSION
scripts/Bootstrap/Pmodules_version: 2ac06ce262 
- set PMODULES_VERSION to 0.99.5
scripts/Bootstrap/{compile,install}_pmodules.sh: df50ec313b 
- bugfix in setting PMODULES_VERSION
scripts/Libraries/mpc/with_modules-*: 83db00c6c8 
- added
scripts/Libraries/mpfr/with_modules-*: 83340128ce 
- added
scripts/Bootstrap/Pmodules/modulecmd.bash.in: renamed from modulecmd.in 704ddb4b54
scripts/Bootstrap/Pmodules/modulecmd.in: renamed to 'modulecmd.bash.in' 537ed6353e
scripts/Bootstrap/.gitignore: ignore autogenerated modulecmd.bash b2aca223c5
scripts/Bootstrap/Pmodules/modmanage: 15fbb5ec83 
- do not source profiles
- modmanage.bash has been moved to libexec
scripts/Bootstrap/Pmodules/modulecmd: 7db9a2e068 
- wrapper to make modulecmd relocatable
scripts/Bootstrap/Pmodules/modulecmd.bash.in: 9b1f262264 
- renamed from 'modulecmd.in'
- moved to libexec
- sub-command load now  supports extended module names like Libraries:mpc/1.0.3
scripts/Bootstrap/Pmodules/{ennvironment,profile}.bash: e5503c54dd 
- cleanup
scripts/Bootstrap/{compile,install}_pmodules.sh: 8170da8d77 
- cleanup
- install 'modulecmd.bash' and 'modmanage.bash' in libexec
scripts/Bootstrap/Pmodules/modulecmd.bash.in: 9ad827b364 
- support for release in extendet module name added
scripts/Bootstrap/Pmodules/bash: 840ae5d1d6 
- module() function cleanup
- build MANPATH from /etc/man.conf{ig}
scripts/Bootstrap/Pmodules/modulecmd.bash.in: 3193331a1f 
- cleanup
scripts/Bootstrap/Pmodules/modmanage.bash.in: 5899aadf81 
- interupt handler added
- some simple fixes
- create Tools/modulefiles
- first code to handle dependencies added
modmanage: a898c33790 
- dependency resolution implemented
OPAL.14/build: 8d51e231d7 
- ippl removed as dependency
opt-pilot/build: 925894cf91 
- default is to compilw with OPAL 1.3.2
gcc: af1c979110 
- add 'with_modules' for gcc 5.2
openmpi: 0bfd8353af 
- define variants
hdf5: 051aab2c45 
- define variants
Merge branch 'master' of gitorious.psi.ch:pmodules/src b697f6307f
bash init-file: c51c004e89 
- namespace added to function, which should be replaced by
  functions from lib.bash
lib.bash, libpmodules.bash: eb33dc1991 
- function names refactored with namespace prefix 'std::'
compile_pmodules: 525b769483 
- functions from lib.bash has namespace now
Pmodules/libpmodules.bash,modulecmd.bash.in: 1ab70662ba 
- refactor function names with a namespace
Pmodules/modmanage.bash.in: 8eb34d76f8 
- refactor function names with namespace
- dependency resolution implemented for 'install' sub-command
lib/lib.bash: 56da018290 
- bugfix
lib/libpmodules.bash: 39ef71e8c5 
- bugfix: namespace prefix added to abspath() call
Pmodules/modmanage,modulecmd: 2856ab6962 
- use /bin/sh in shebang
- unset BASH_ENV
vtk/build: 99a7feb85c 
- add missing namespace prefix to std::append_path() call
- Bootstrap/ moved one level up eee5c158cb 
- pmodules.xyz() functions renamed to pbuild::xyz()
- use pbuild for bootstrapping components
git/build 2cdf1f152e 
- use pbuild
Bootstrap: 180de2f492 
- new command 'modbuild' to build modules
- separate bootstrapping from other build-blocks
- review BASH libraries
- adapt build-blocks in bootstrapping
config/versions.conf 36014b636a 
- remove versions for build-blocks we use for building Pmodules themself
openmpi/compiler: 4bac740245 
- gcc/5.2.0 added
openmpi/versions 943e05787a 
- openmpi/1.8.8 added
hdf5/compiler 17109d5543 
- gcc/5.1.0 removed
- gcc/5.2.0 added
hdf5/versions 179e283949 
- version 1.8.15-patch1 renamed to 1.8.15.1
emacs/build b215524883 
- adapted to new build system
- reviewed
various build-blocks adapted to new build system 75eec7af86
modbuild: 93afe74205 
- cleanup
compile_pmodules: 380ae5dbe1 
- move modulecmd.tcl only if build was successfull
build-blocks: bc9e63799e 
- use modbuild in shebang
- refactore function calls
build-block: 1434c8a886 
- use modbuild in shebang
- refactor function calls
Bootstrap/Pmodules: 5b066ec182 
- re-factor 'die()' function, new name is 'std::die()'
Pmodules/modulecmd.bash.in: cd810ab48f 
- bugfix in 'module use' with out args
Pmodules/libpmodules.bash: 3d4f6357bb 
- unused function is_released() removed
- run through each step of build if forced
Pmodules/modbuild: cf907b0319 
- cleanup
- the name of the build-block must not be passed as first argument any more
config/environment.bash.psi 5ed7133800 
- added
Pmodules/modulecmd.bash.in: ea35802685 
- bugfixes in sub-commands 'use' and 'unuse'
Pmodules/modbuild: 9ea9825e35 
- usage() output reviewd
- targets are now options (--prep instead of prep, etc)
Pmodules/libmodules.tcl e01e8cac0d 
- better debug output in 'module-addgroup()'
build-blocks: 3abedd8da0 
- modulefiles added
Pmodules: 75f48ba6ab 
- templates moved to ${module_group}/${PMODULES_TEMPLATE_DIR}
bash init file: add comment bd9ddc5a7e
Pmodules/modulecmd.bash.in 031c6dd574 
- handle options --help, --version in subcomand_help()
Pmodules/modulecmd.bash.in: minor changes in usage text 2d928c5eb2
Merge branch 'master' of gitorious.psi.ch:pmodules/src 538b97bc07
Tools/git/build: be2f6d7cd5 
- path to Macports asciidoc added
Pmodules/modbuild 2601c606a2 
- fix bug in handling --release option
Bootstrap (building Pmodules itself) removed 9b106fd458
cmake/build: 5f3a26f386 
- use system curl lib
- use system compiler
scripts/all.build removed 75832ca05a
all buildblocks moved one level up 0a9fefd921
Compiler/openmpi: cec892d393 
- variant definitions added
H5root/build: c262915598 
- compile in source tree
- build with JOBS=1, parallel build are failing
Programming/cmake/build: use '--system-curl' on Mac OS X only f63ce5c994
Compiler/root/build: pbuild::configure(): '--disable-asimage' added a50ae8e4f0
MPI/cpmd/build: fixes, cleanup 0bbfddd3be
MPI/cpmd: unused files removed, with_modules added c58c4b5de8
MPI/gromacs/with_modules: added 1e058f71e1
Compiler/root/build: build with Oracle DB support; new version requires gsl 2f86bb158c
Compiler/openmpi/1.x.y/variants replaced f7cd37fa45
Compiler/openmpi/1.x/variants: 8904624fd1 
- added, replacing the 1.x.y/variants files
Programming/gcc/with_modules-4.9.3: 8d9027b4d5 
- added
Compiler/H5root/with_modules: e36ef9af5a 
- added
bin/manage_variants: 0cde2f6950 
- added a first version
Merge branch 'master' of git.psi.ch:Pmodules/buildblocks 7a8c564cb2
MX/phenix/*: cec248b451 
- added
Merge branch 'master' of git.psi.ch:Pmodules/buildblocks a8c7acb601
Compiler/boost/build 60a45fc08f 
- build shared libraries
Compile/root/build: 7e5e254ec3 
- enable-asimage added to configure call
- potential problems with installation fixed
MPI/cpmd/build: 891ee2f745 
- use target LINUX-X86_64-PMODULES
Compiler/root/with_modules: 0634ac2693 
- added
Compiler/roger added 76e2925d6c
Compiler/root/build: ec05c2de87 
- install Oracle InstantClient libraries
Compiler/root/modulefiles: 132e2cfa01 
- use new module procedures instead of 'set xyz'
Compiler/root/with_modules: fdf38924e7 
- use Python 3.4, not anaconda
Added --enable-threadsafe config option d1786b473d
Added mpfr 3.1.4 e10f9758e0
Added gcc 5.3.0 b140709dd2
Libraries/tiff/build: ed53083be2 
- don't buid shared libs
- jpeg support disabled
- compile with PIC
Libraries/tiff/modulefile a4c5fbc0bd 
- use module-xxx procedures
MPI/hdf5/build e93f9ab396 
- thread-safe enabled
Tools/emacs/build 4a9bfd10f0 
- ${COMPILER} removed from build-dependencies
- build dependencies 'libungif' and 'tiff' are independend from OS
Tools/emacs/with_modules 0ea0d6ce7f 
- added
cleanup fbfd33caf1
Compiler/openmpi/1.x/variants: 581be1c7b9 
- updated
MPI/hdf5/1.10/variants: 1327e0bd41 
- added
Tools/git/build: b69addaefb 
- doc files updated
Programming/gcc/with_modules-{4.8.5,5.3.0} 9aa15165af 
- added
bin/manage_variants 4207911754 
- reviewed
Merge branch 'master' of git.psi.ch:Pmodules/buildblocks d0dc6ebe32
MPI/hdf5: variants for 1.8 added 8709b4cddb
Programming/gcc: with_modules replaced by variants 59f0ffa54b
Libraries/mpfr: use variants mechanism 07387d53f6
Libraries/gmp: use variants mechanism 5b95399f0d
Libraries/mpc: build dependencies removed from buildblock 47aa4db007
Libraries/gmp: use variants mechanism de341f9c12
Tools/git: use variants mechanism b64d199558
Compiler/openmpi/build: build with sge and slurm support 107e8a1d93
Merge remote branch 'origin/HEAD' 73f5f3ab8b
Add gcc 6.1.0 275e466972
Add support for gcc 6.1.0 83fe174417
Libraries/gmp/6/variants: 72f474a221 
- change release of 6.1.0 to stable
MPI/parametis/{3,4}/variants: 6525cb976e 
- added
MPI/parmetis/build: ce3d82fd86 
- adapted for version 4
Programming/gcc/5/variants: 3d43cdbd71 
- set release of versions 4.9.2 to deprecated
Programming/gcc/5/variants: 65944825bf 
- set release of versions 5.{1,2}.x to deprecated
Merge branch 'master' of git.psi.ch:Pmodules/buildblocks 2ff46ff833
Tools/openssl: added 9b74d840dd
Programming/Python: added 482d62e347
bin/manage_variants: exit on build failure ccdf074907
Programming/gcc/build: build dependencies are now defined in then variants definition 599691c7fe
MPI/hdf5/build: build dependencies are now defined in then variants definition d6529a4820
variant files updated for openmpi, hdf5/1.8, gcc/6 d0f3636e06
HDF5/build: 65c3540ad7 
- declaration of dependencies moved to variants file
- building of Fortran API enabled
- building shared libs enabled
- building Python API enabled if major version >= 0
HDF5/H5hut/2/variants: d021feff56 
- added
declaration of dependencies moved to variant files 7fa15b6acf
Merge branch 'master' of git.psi.ch:Pmodules/buildblocks c59d4994d9
- openmpi 2.0 for gcc/6.1.0 and intel 16.3 8bca4b52da 
- hdf5_serial 1.10.2 for intel/16.3
erial for intel 16.3 29f7095e5f
Subsumed into another variants file (variants.Darwin) bfd0397355
Programming/gcc/4/configure-as.patch 6f2ea6754b 
- patch required for Mac OS X 11 and Xcode 7
Compiler/hdf5_serial/1/variants e0585540ae 
- variants for hdf5 1.8.16 and 1.8.17 added
- set variants for outdated compilers to deprecated
Programming/gcc/build f5a1184062 
- patch of main configure added to fix assembler problems on Mac OS X and Xclode 7
MPI/hdf5/1.8/variants b70dab79b9 
- changed to new requirements
Compiler/openmpi/build d6fb8df904 
- setting dependencies in the build-block is now deprecated
Compiler/openmpi/1.8/variants.Darwin 57897bd113 
- adapted to new format
Compiler/openmpi/1.10/variants.Darwin 239f498d30 
- cleanup
- adapted to new format
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks e62c153ee1
conflicts merged bd4586fe01
variant-files adapted to new format 9461af59e7
Compiler/atlas/build: 368fcdee99 
- dependencies are now set in the variants-file
Compile/atlas/modulefile: 4f7fcf8f14 
- use extended module commands
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 920bd15614 
Conflicts:
	Compiler/openmpi/1.10/variants.Linux

Added gcc/6.2.0
Compiler/boost/1/variants: 3f994cf1ac 
- variants for boost 1.55.0 and 1.58.0 with gcc 4.8.5 and Python 2.7.11 added
Compiler/boost/build: 9206a2f68a 
- build shared *and* static libraries
HDF5/H5hut/1.99/variants bff390736b 
- added
HDF5/H5hut/build 482a56670d 
- build in source tree if major version is 1
MPI/hdf5/1.8/variants 682eaba875 
- variant for hdf5/1.8.12 with gcc/4.8.5 and openmpi/1.8.8 added
- variants for hdf5/1.8.17 added
Tools/gnuplot/build 4f8fa16ac7 
- added
Tools/gnuplot/build 832972b531 
- dependencies are now defined in the variants file
bin/check_releases cccbd598ff 
- added, work in progress
bin/manage_variants 31dc5aca5e 
- do *not* pass release to build-block
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks d7aacc51d4
Added hdf5_serial with gcc 6.2.0 dd142e72eb
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks d43f492889
Programming/gcc/4/variants: e51a55e83c 
- gcc/4.9.4 added
Programming/gcc/build: bcf63575fb 
- no need to patch gcc 4.9.4
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 7cab447e97
Compiler/root/5/variants c64320e08e 
- added
Compiler/root/build 63abc6cb92 
- fixes for Pmodules version >= 0.99.6
Compiler/OpenBLAS/0/variants 499b013a36 
- added
Compiler/OpenBLAS(modulefile 38bfbdcd9a 
- use extended module commands
Libraries/pcre dfafee8014 
- added
MPI/parmetis/{3,4}/variants ac991b3d30 
- variant with gcc/4.8.5 added
MPI/parmetis/build b4f621e5ff 
- changes for Pmodules build system >= 0.99.6
Tools/swig 7f4747e805 
- added
Compiler/openmpi/1.8/variants.Darwin ee946f8294 
- variant for openmpi/1.8.8 with gcc/4.9.4 added
Compiler/root/build 7d3ebc1186 
- don't build with Oracle instant client support on Mac OS
MPI/trilinos/build 76c2001196 
- changes required by Pmodule build system >= 0.99.6
MPI/trilinos/modulefile 6111e34838 
- use extended modulefile commands
MPI/trilinos/11/variants b4d1024d06 
- added
HDF5/H5hut/build ffd0c551cb 
- do not run autogen in pre-configure
HDF5/H5hut/2/variants 9c1ef8fdac 
- variant for H5hut/2.0.0rc2 with gcc/4.8.5 and openmpi/1.10.2 added
Compiler/boost/1/variants 5f0eb1469a 
- variant for boost/1.61.0 with gcc/4.8.5 added
HDF5/H5hut/build ffa60e09ff 
- compile without Python for the time being
MPI/trilinos/modulefile 172b0f82d0 
- bugfix
Compiler/gsl/1/variants 2def85a440 
- variant for gcc/4.8.5 added
Tools/openssl/build 1d5e5f1123 
- build shared libs
Programming/Python/build c46832297f 
- export LDFLAGS and CPPFLAGS inside the functions
Programming/Python/get-pip.py ee717a6e1a 
- new version
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 9c14307c1b
Compiler/openmpi/1.10/variants.Linux 62f33f36c0 
- variant for openmpi/1.10.2 with gcc/4.9.4 added
HDF5/H5hut/2/variants 197f3db1c6 
- variant for H5hut/2.0.0rc2 with gcc/4.8.5, openmpi/1.10.2 and hdf5/1.8.17 added
Tools/emacs/build e022344c58 
- adapt build block to new build environment
Tools/emacs/modulefile 5b5af8549d 
- use enhanced functions
Tools/emacs/25/variants 7a05d1b349 
- define dependencies here
Libraries/libungif/build d44c98f2a9 
- set dependencies removed, now done in variants file if required
Tols/emacs/25/variants 01866df0c0 
- version for tiff changed to 4.0.6
Programming/Tk 5cda1fdd39 
- dependencies are now defined in 8/variants
gcc/6.2.0 added to variants files ff0c7092e0
Compiler/openmpi/1.10/variants.Darwin 79e23c7bd3 
- variant for gcc/6.2.0 added
- openmpi/1.10.4 added
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 9095cdbd71
Compiler/root/with_modules f07ff67468 
- removed
Programming/Python/2/variants b520b22d7e 
- use openssl/1.0.2j
Tools/openssl/build 13f312c6ad 
- problems with configuration fixed
MPI/parmetis/4/variants 4750ec4ebc 
- version added to cmake
MPI/trilinos/11/variants 3e56570bc7 
- use cmake/3.4.1
Programming/autoconf f43f03b1fa 
- dependencies defined in variants file
Programming/automake a0f7f6eb1d 
- dependencies defined in variants file
Programming/libtool 466fecb251 
- dependencies defined in variants file
several variants file added 890d21d60c
Programming/{Tcl,Tk}/build 193e8f67be 
- SOURCE_URL added
Tools/git/build 6c50ba168e 
- SOURCE_URL added
- set dependencies in variants file
Compiler/openmpi/1.10/variants.Darwin: 8bc7ef7423 
- change releases to stable for compiler gcc/6.1.0 anf gcc/6.2.0
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 19cd773550
Compiler/openmpi/2.0/variants* ecb05b519c 
- split into variants.Linux and variants.Darwin
MPI/hdf5/1.8/variants c7f96fc271 
- change release to stable for gcc/<=6.2.0 and openmpi/<=1.10.2
MPI/parmetis/3/variants: 42823b45ef 
- parmetis/3.2.0 compiled with gcc/6.2.0 and openmpi/{1.10.4,2.0.1} added
MPI/parmetis/4/variants 26e0b13bf6 
- parmetis/4.0.3 compiled with gcc/6.2.0 and openmpi/{1.10.4,2.0.1} added
MPI/Trilinos/11/variants 125cc83148 
- trilinos/11.14.3 compiled with gcc/6.2.0 and openmpi/{1.10.4,2.0.1} added
variants for Edison added 458152ceff
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 126d8e4cd1
SOURCE_URL added for automatic download 0812965a15
Compiler/openmpi/build 941f68b946 
- SOURCE_URL added
- define dependencies in variants file
MPI/hdf5/build 4e6dbc5105 
- SOURCE_URL added
- export CXX (required on some systems=
Programming/automake/1/variants 79d948c8d1 
- version 1.15 added
Programming/cmake/3/variants 3920fcd9ae 
- version 3.6.3 added
Programming/libtool/2/variants 53747b6de9 
- version 2.4.6 added
HDF5_serial/H5hut 3f2bef7bc3 
- H5hut_serial renamed to H5hut
Compiler/OpenBLAS/0/variants: 04140d437d 
- version 0.2.19 added
- set release to stable
Compiler/atlas/3/variants e17c9b2653 
- compile with gcc/4.8.5, 4.9.4, 5.4.0, 6.2.0 added
- variant with gcc/4.9.3 removed
Compiler/atlas/build 40390df2c1 
- SOURCE_URL added
Compiler/boost/1/variants 5164c2d365 
- set release of versions prior to 1.62.0 to stable
- boost/1.62.0 added for recent gcc's
Compiler/gsl/1/variants 45abb63c0c 
- set release of versions < 1.15 to stable
- variants for gsl/1.16 added for recents gcc's
Compiler/openmpi/1.10/variants.Linux 40f1ccfbb4 
- set variants of versions < 1.10.4 to stable
- variants for version 1.10.4 added
Compiler/root/5/variants 33e92d67d8 
- variants for version 5.34.36 added
Compiler/root/build 7db50771a2 
- SOURCE_URL added
Compiler/root/{build6,6/variants} 01c4a16dca 
- added
Compiler/vtk/build d48a7c9de2 
- dependencies are now defined in variants file
HDF5_serial/H5hut a71e5321c4 
- H5Hut_serial renamed to H5hut
- dependencies are now defined in variants files
- compile with vtkconverter disabled
Programming/Python/2/variants 6f9f76680d 
- set release of version 2.7.11 to stable
Programming/Python/build f4c17d03f7 
- compile with -fPIC
- enable build of shared libraries
Programming/cuda/ 49a53e0ee0 
- new module for CUDA added
Programming/gcc/4/variants 3f61afe4c9 
- change release of gcc/4.9.4 to stable
Programming/gcc/5/variants c251f8b7f1 
- release of version 5.4.0 changed to stable
Programming/gcc/6/variants 05f1ef13cd 
- release of versions 6.1.0 and 6.2.0 changed to stable
Tools/openssl/1/variants 0e9b19a71f 
- added
Compiler/OpenBLAS/0/variants 3c340911d9 
- variant for gcc/5.4.0 added
Compiler/OpenBLAS/build 340447e574 
- pbuild::confinger(): use default 'Makefile.rule'
- fixes in make.inc
Compiler/SuperLU efe4a7e17b 
- support for version 5
Compiler/gsl/2/variants f98629f26b 
- added
Compiler/hdf5_serial/variants c0a2946aa6 
- variants for version 1.8.18 added
Compiler/openmpi/2.0/variants.Linux 6c46443f47 
- adapt to new format
- variants for version 2.0.1 added
Compiler/roor/build6 0ecfa9e24b 
- use install(1) to install Oracle InstantClient libraries and header files
Compiler/root/6/variants 845789b0c9 
- mark version 6.04.10 as deprecated
- variants for 6.08.00 added
HDF5/H5hut/2/variants d22edb418c 
- variensts for version 2.0.0rc3 added
HDF5_serial/H5hut/2/variants f1e3e75561 
- variants for versions 2.0.0rc2 and 2.0.0rc3 added
MPI/OPAL/1.5/variants ecfa0af5ba 
- added
MPI/OPAL/build fb0a397e04 
- DKS enabled
- dependencies are now defined in variants files
MPI/dks d0af7c7fb0 
- build-block added
MPI/hdf5/1.8/variants e1bc6f7bf2 
- variants for version 1.8.18 added
- cleanup releases of old versions
MPI/hdf5/build b97c28e699 
- SOURCE_URL fixed
MPI/parmetis/4/variants aa41a6e101 
- mark variants fo version 1.10.2 as stable
- variants for version 1.10.4 added
MPI/trilinos/12/variants 9c1a7e4dd8 
- added
MPI/trilinos/build c107a5e5ad 
- cleanup
- dependencies are defined in variant file
Programming/binutils/build ce58296cc6 
- cleanup
- dependencies are defined in variant files
Programming/binutils/modulefile 6bcac6ac72 
- use extendet module functions
MPI/trilinos/build b9ac51dfbd 
- disable libdl as TPL
Compiler/OpenBLAS/build 81c2880f1b 
- set ""USE_SIMPLE_THREADED_LEVEL3 = 1" in Makefile.rule
Compiler/OpenBLAS/build 26247e490f 
- patch Makefile.rule to use right MacOS X deployment target
Compiler/hdf5_serial/1/variants df8c02e37d 
- set release of version 1.8.18 to stable
Compiler/openmpi/1.10/variants.Darwin 41938703b4 
- set release of 1.10.4 to stable for all compilers
Compiler/openmpi/1.10/variants.Linux dc596d3a92 
- set release of version 1.10.4 to stable for all compilers
Compiler/root/6/variants f789374582 
- set release of version 6.08.00 to stable for all GCC's
- variants for version 6.08.02 for GCC's added
MPI/hdf5/1.8/variants 624f7f923e 
- set release of version 1.8.18 to stable for all supported GCC's
Programming/gcc/4/variants 25fafb4982 
- changes in white space
Compiler/root/build6 6063d3f3f7 
- adapt config for Darwin
Compiler/root/build6 4b02502e1f 
- enable X11
- work-around problem with cmake and wrong path to root.exe
Programming/gcc 3a4fb0cc2d 
- work-around issue with empty functions and ld64 on Darwin
Compiler/root/build6: 10a4a922d6 
- bugfix in Darwin configuration
- run make with -j6
Programming/gcc 38ac56ba6f 
- apply patch PR57438 to GCC 6 as well as 5
MPI/OPAL/with_modules: b46657620d 
- removed
OpenBLAS, boost, gsl, hdf5_serial, openmpi: 7d18db27d5 
- variants for gcc 6.3 added
Compiler(openmpi/2.0/variants.Darwin 3aa6cd96d9 
- changed to current format
MPI/OPAL/1.5/variants* 7b0f72d220 
- snapshots added
MPI/OPAL/build: afeef58b67 
- enable DKS on Linux only
MPI/dks/1/variants.Darwin ee97fa0adb 
- added
OPAL/opt-pilot: ea46054c91 
- review build-block
OPAL/opt-pilot/with-modules: 99cffa3039 
- deleted
Tools/git/2/variants 03fe42a10a 
- version 2.11.1 added
Tools/git/modulefile 3b84003a05 
- use Pmodules procedures
Programming/gcc/modulefile f08d60bee8 
- use Pmoduels procedures
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 2f90f20b36
MPI/OPAL/1.5/variants 5c0b02ed47 
-  build module for version 1.5.1-20170216 snapshot
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks a425862cec
use Pmodules extended commands in modulefiles (fixing issue #3) 98687e94de
openmpi 2.0.1 with gcc 6.3.0 cb26a6fe2c
gmp 6.1.2 68c0fb1c48
mpfr 3.1.5 533234ca3c
gcc 6.3.0 61d14c6560
boost 1.63.0 for gcc 6.3.0 61e25ea4a7
buildblocks/gtest: added 54dfc484e6
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks edb67f75c8
Compiler/root b161db7b82 
- fix issue with Oracle Instant Client 12
MPI/dks baebfef4e0 
- variants for versions 1.0.2 and 1.1.0 added
- compile version 1.1.0 with DKS_FULL=ON
MPI/OPAL 2cb58855bb 
- variants for 1.5.1-20170217 and 1.5.2 added
- compile with DKS enabled
OPAL/opt-pilot 30ff109351 
- variant for 0.1.3-20170217 added
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks ce6c3abfd8
Programming/gtest 13528a2b37 
- install include files in sub-dir $PREFIX/include/gtest
Programming/libtool 1249d1274c 
- typo fixed
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 4703db96f5
Programming/gtest 44c9e8b0d6 
- moved to group Compiler
Compiler/gtest b451355f04 
- set group to Compiler
- add gcc to variant
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 4e82092a30
boost 1.58 for gcc 6.3 db4007af31
Compiler/OpenBLAS/build 486dffd2b2 
- compile without AVX and AVX2 due to problems on Mac
Compiler/boost/build 20364c7083 
- fix SOURCE_URL
Libraries/gmp/build 1552ad1d6d 
- SOURCE_URL added
Libraries/mpfr/build 20a7212808 
- SOURCE_URL added
Libraries/mpc/1/variants 1c33bde29b 
- new variant 1.0.3-2 added with current gmp and mpfr
Libraries/mpfr/build 2cb089e451 
- SOURCE_URL added
MPI/parmetis/build fcf5c17c83 
- unset MACOSX_DEPLOYMENT_TARGET
- use CMake for version 4.x.y
- fix in install metis.h
Programming/Tk/build 16bf242bae 
- add Macport's include dir to 'C_INCLUDE_PATH' if OS == Darwin
- add Macport's library dir to 'LIBRARY_PATH' if OS == Darwin
- both is a hack for X11 includes and libraries
Programming/gcc/5/variants cf295d58d9 
- variant added for gcc 5.4.0 with current gmp, mpfr and mpc
Programming/gcc/build 7d3396b516 
- SOURCE_URL added
- if OS == Darwin: use Macports as, ld, ar, nm, otool etc
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 8c13c1005c
MPI/dks/1/variants c051e3b503 
- variant for dks/1.1.1 added
MPI/OPAL/1.6/variants a5fdb6805a 
- variant for OPAL 1.6.0rc1 added
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks e5dc61cb0b
MPI/OPAL/1.6/variants.Darwin d0e43c4ab9 
- variant for OPAL/1.6.0rc1 added
Support gcc 7.1.0 3e35ae3df5
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 95c3b2c85f
Support for 2.1.0 1c45315aea
Compiler/openmpi/2.0/variants.Linux 3fdcc59d8d 
- variant for version 2.1.0 removed
Compiler/openmpi/2.1/variants.Linux 6c1a29a5e2 
- variant for openmpi/2.1.0 with gcc/7.1.0 added
Compiler/openmpi/build 63f2a69722 
- download bz2 tarball
Tools/git/2/variants 802b4f6f7a 
- release of version 2.11.1 changed to stable
- version 2.13.0 added
Tools/git/build ab44b25ace 
- use http in SOURCE_URL
Programming/cuda/8/variants 3461788dcb 
- bugfix
OPAL/opt-pilot/build 29be44ec80 
- add '-DENABLE_DKS=ON' to cmake args on Linux
OPAL/opt-pilot/0/variants a0d24a8022 
- version 0.1.4rc1 added
MPI/OPAL/1.6/variants 9fc34ccbbd 
- version 1.6.0rc2 added
Add gcc 7.2.0 3fa080876f
Add gcc 6.4.0 bd4fd0f326
Openmpi 2.1.1 for gcc 7.2.0 aa2e8bdcd0
HDF5 serial for gcc 7.1.0, 7.2.0 and intel 17.1 ffb48873e2
openmpi/2.1.1 for intel/17.1 bd1899e592
hdf5_serial/1.10.1 for gcc/6.4.0 0ae2e55557
openmpi/2.1.1 for gcc/6.4.0 0f9fd632e4
penmpi/2.1.1 for intel/17.4 b7fc1e3601
hdf5_serial/1.10.1 for intel/17.4 6640dc7c2c
hdf5_serial/1.10.1 for pgi 17.3 and 17.7 7a383a067f
Adapt to PGI compilers 04904c33c3 
- pgrepro doesn't pass preprocessor tests
- pgc++ doesn't understand -pthread switch given to it by libtool
modulefile for Matlab added 1b859bc93b
cmake/3/variants: variant for version 3.8.1 added 1415849b8d
gcc/4/variants: variant for gcc/4.8.2 added 5c913c1903
gcc/6/variants: use mpc/1.0.3-2 for gcc/6.3.0 681086c85d
gcc/7/variants: variant for gcc/7.2.0 added f952fe2809
hdf5_serial/1/variants: variants for version 1.8.18 with gcc/7.2.0, and for versions 1.8.19, 1.10.1 for all supported compilers added b947d301e5
resolve conflict 2f2cf48c44
Update module-help in matlab modulefile 8cf4b2fff9
Add README for matlab installation aa741624b1
H5root: changes to support ROOT 6 a7e477263f
Compiler/SuperLU/5/variants 9d9338d8f4 
- gcc/5.4.0 variant added
Compiler/UMFPACK/5/variante 849a8ee7d8 
- variant with gcc/5.4.0 added
Compiler/UMFPACK/build 6788d307b9 
- SOURCE_URL added
Compiler/UMFPACK/modulefile 88cd384c07 
- quotes in module-help fixed
Compiler/atlas/modulefile 5e6444d04c 
- type in procedure namce fixed
Compiler/boost/1/variants 02599bcedf 
- variants with gcc/4.8.2, gcc/5.4.0 and gcc/7.1.0 added
Compiler/clapack 920dc125f3 
- build-block added
Compiler/eigen3 ecda6af3d1 
- build-block added
Compiler/root/build6 00f3093392 
- use array for OS dependend configureation args
Compiler/vtk/build 1ce087a2a4 
- type fixed in comment
Compiler/vtk/8/variants.linux 30be24c598 
- variaant for version 8.0 with gcc/5.4.0 added
Libraries/mpfr/build c3c339b959 
- SOURCE_URL fixed
MPI/OPAL/1.6/variants ac18400b1a 
- variants for OPAL 1.6.x added
MPI/OPAL/build 8f661076d4 
- SOURCE_URL added
MPI/OPAL/modulefile 1d6aee6e7e 
- bugfix in excludeing OPAL_PREFIX from auto-set
MPI/dks/build 85ab5178af 
- fix for static CUDA and OPAL
MPI/dks/1/variants cf7b8ceaf1 
- variant for dks/1.1.2 with gcc/5.4.0 added
Tools/HDFView ac7ed897e0 
- build-block added
Tools/gnuplot/5/variants 065d921b72 
- variant for gnuplot/5.0.4 removed
Toole/gnuplot/build e8af606b25 
- SOURCE_URL added
Programming/ld64 2eac7e159c 
- build-block added
MPI/elegant a6044f16ba 
- build-block added
MPI/gromacs a8f456dfb5 
- use variant files to specify dependencies
- use max SSE2
- SOURCE_URL added
MPI/trilinos/build cd00b05341 
- SOURCE_URL added
- Darwin specific configuration added
- set build type to RELEASE
Programming/gcc/5/ 90e855cfba 
- macOS pafch added
MPI/trilinos/12/variants 4b8d5aa00b 
- variants added for version 12.10.1 with build type 'release'
MPI/parmetis/4/variants a46e710365 
- variant for parmetis/4.0.3 with gcc/4.8.2 added
MPI/lammps 75106cfba8 
- build-block added
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 945f5bf5b9
Update README.md d1c64b3853
Update README.md bb783aa91f
Update README.md a5e31f0a0e
Update README.md d43b8e7729
Update README.md 629a611a67
Update README.md 2a8124e5a1
Update README.md 2eaf6b2ac6
Update README.md 7d2e95afa6
Update README.md e4e698c297
Update README.md d0d6d0b77b
Update README.md 32b0e8dbbf
Update README.md d61a068b52
mpfr/4.0.0 2ea0c0fcf9
openmpi/3.0.0 for gcc/7.2.0 96bebe5f4b
Libraries/tiff: d6a0122155 
- module for version 4.0.9
MPI/trilinos: aa50f54897 
- use system BLAS on macOS
Tools/emcs b779338398 
- module for version 25.3
Tools/emacs/build c5a6a4d7e2 
- SOURCE_URL added
MPI/trilinos b180089399 
- build version 12.10.1-1 and newer with system BLAS
conflict in trilinos/build resolved f9fb318776
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 3ae187585c
mpc/1.1.0 de3945c488
gcc/7.3.0 0a78377166 
Use tar.gz source instead of bz2, because that's what gnu provides
hdf5_serial/1.10.1 for gcc/7.3.0 3ee2dc8840
openmpi/3.0.0 for gcc/7.3.0 d4f955ba2d
Compiler/gtest/build: ec39aa35c3 
- do not set CMAKE_OSX_SYSROOT and CMAKE_OSX_DEPLOYMENT_TARGET on macOS
Compiler/openmpi/1.10/variants.Linux: 74278791b4 
- openmpi/1.10.7 build with CUDA support added
Compiler/openmpi/1.4/variants.Linux: 87e702d4b4 
- openmpi/1.4.3 build with gcc/4.7.4 added
Compiler/openmpi/build: e5032c73e6 
- build with CUDA support on Linux
Programming/Python/3/variants: 8f016f6ea1 
- Python/3.6.3 added
Programming:/Python/build: 1e97370f09 
- use pip${V_MAJOR} to compile modules
Programming/Tcl/8/variants a95e520de7 
- Tcl/8.6.7 added
Programming/binutils/2/variants: dd3305b5d2 
- binututils/2.29 added
Programming/binutils/build: 919cbd40ae 
- SOURCE_URL added
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 4805e8012a
Compiler/hdf5_serial/1/variants -> variants.Linux 012ab8e4ac 
MPI/hdf5/1.10/variants -> variants.Linux
Compiler/OpenBLAS/0/variants: ee9fe20839 
- version 0.2.20 with gcc/7.3.0 added
Compiler/boost/1/variants 811848a915 
- version 1.66.0 with gcc/7.3.0 added
Compiler/gsl/2/variants 71e4fbfb0c 
- version 2.4 with gcc/7.3.0 added
Compiler/hdf5_serial/1/variants.Darwin 81be8e224c 
- file added
Compiler/hdf5_serial/build d0a6d9c615 
- source URL added
Compiler/openmpi/1.10/variants.Darwin 58c77f692d 
- version 1.10.7 with clang-macos/9.0.0 and with gcc/7.3.0 added
Compiler/root/6/variants b57fef156f 
- version 6.12.06 with gcc/7.3.0 added
HDF5/H5hut/2/variants 5e1e68a3b8 
- version 2.0.0rc4 with gcc/7.3.0 added
HDF5/H5hut/build 8f0d04c18b 
- source URL added
HDF5_serial/H5hut 9f213a2896 
- version 2.0.0rc4 with gcc/7.3.0 added
- source URL added to build block
MPI/hdf5/1.10/variants.Darwn 7da10750ae 
- version 1.10.1 with clang-macos/9.0.0 + openmpi/1.10.7 and with gcc/7.3.0 + openmpi/1.10.7 added
MPI/hdf5/1.10/variants.Linux f029d0fc72 
- version 1.10.1 with gcc/7.3.0 added
- version 1.10.0 released as stable
MPI/hdf5/build 74ba292073 
- use array for for arguments passed to configure
- add support for Clang from Xcode (no Fortran!)
MPI/parmetis/4/variants 10a8da1cf3 
- version 4.0.3 with gcc/7.3.0 + openmpi/1.10.7 added
MPI/trilinos/12/variants{.Darwin} 845d4dd158 
- version 12.12.1 with cc/7.3.0 + openmpi/1.10.7 + hdf5/1.10.1
Programing/Python/build ade1fed102 
- installation of mpi4py added
Programming/gcc/build 015df6a130 
- Darwin build reviwed
Tools/swig/3/variants 6e5eb27531 
- version 3.0.12 added
Tools/swig/build a14175794f 
- source URL added
Tools/swig/modulefile b45fe73c0b 
- added
Compiler/openmpi d51910bb4d 
- do not compile with CUDA support if gcc version is new then 5.4
Compiler/openmpi ab5088f609 
- variants for version 2.1.2 and 3.0.0 with gcc/7.3.0 added
Compiler/root 4eae2f2a4e 
- we do not have to apply the CMakeList patch for Oracle Instantclient if root version is >= 6.12
MPI/hdf5 fa05a0cfc2 
- variants for hdf5/1.10.1 with gcc/7.3.0 and openmpi/1.10.7,2.1.2,3.0.0 added
MPI/parmetis a40a231856 
- variants for version 4.0.3 with gcc/7.3.0 and openmpo/2.1.2,3.0.0 added
MPI/trilinos 8d803771aa 
- Kokkos and MueLu enabled
Compiler/OpenBLAS b6dc74445b 
- support for clang-macos added
Compiler/OpenBLAS d276a7a9ea 
- variants for version 0.2.20 with clang-macos/9.0.0 and intel/17.4
Compiler/boost 5f515b19dc 
- variants for version 1.66.0 with clang-macos/9.0.0 and intel/17.4 added
Compiler/gsl 32822c0ca4 
- variants for version 2.4 with clang-macos/9.0.0 and intel/17.4 added
Compiler/gtest 56fd246f09 
- variant for version 1.7.0 with gcc/7.3.0 added
Compiler/gtest/build 536484d1ea 
- SOURCE_URL added
Compiler/mpich f311a55761 
- buil-block reviewed
- variant for version  3.2.1 with intel/17.4 added
Compiler/openmpi f89530258b 
- variants added for versions 1.10.7, 2.1.2, 3.0.0 with intel/17.4 added
HDF5/H5hut 73f33c266c 
- variants added for version 2.0.0rc4 with
  gcc/7.3.0, clang-macos/9.0.0, intel/17.4
  openmpi/1.10.7, 2.1.2, 3.0.0
  hdf5/1.10.1
MPI/dks/build 28c38dc1c3 
- dummy SOURCE_URL added
MPI/hdf5 46f0ea74ea 
- variants added for version 1.10.1 with
  clang-macos/9.0.0, gcc/7.3.0
  openmpi/2.1.2, 3.0.0
MPI/hdf5 08efa633cb 
- variants added for version 1.10.1 with
  intel/17.4
  openmpi/1.10.7, 2.1.2, 3.0.0; intel-mpi/17.4
MPI/parmetis 4e2a6d314a 
- variants added for version 4.0.3 with
  clang-macos/9.0.0; intel/17.4
  openmpi/1.10.7, 2.1.2, 3.0.0
MPI/trilinos 31ae015cf7 
- variants added fo version 12.12.1 with
  gcc/7.3.0 intel/17.4
  openmpi/1.10.7, 2.1.2, 3.0.0
  hdf5/1.10.1
mpich: variants for 3.2.1 with gcc/6.4.0 & 7.3.0 added aa6ef91dfa
openmpi: variant for 3.0.0 with gcc/6.4.0 added dc42fc020d
dks: variant for 1.1.2 with gcc/7.3.0, openmpi/3.0.0, boost/1.66.0 added be1f3bffd4
cmake: versions 3.9.6 and 3.10.3 added 990c36ca5a
cmake: version 3.10.3 added c5ac8e43ae
git 7d1f386943 
- release version 2.13.0 as stable
- version 2.16.2 added
vim: module added e1c6a8e8b3
Python 0aee428b67 
- mpi4py removed
Python 2ba8c50c90 
- variant for version 2.7.14 added
git ce1b5be86d 
- use Modules perl, asciidoc and xmlto for building
openssl 461db33ac1 
- variant for version 1.0.2o added
hdf5_serial/1.10.2 for intel/18.2 and gcc/7.3.0 5f513f9f3c
openmpi/3.0.1 for intel/18.2 and gcc/7.3.0 67d94db7ad
atlas/3: variants for gcc/5.5.0, gcc/6.4.0 and gcc/7.3.0 added e2537e4b8b
mpc/1: variant with gmp/6.1.2 and mpfr/4.0.1 added 64cde58943
mpfr/4: variant for mpfr/4.0.1 with gmp/6.1.2 added 8f14cccf0e
automake/1: variant for version 1.16 added 1df7c04586
gcc/5: variant for version 5.5.0 added aa211abf0d
perl: new module added b19161eb05
asciidoc: new module added da1c901ab9
xmlto: new module added 625139f042
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks eacbd91a4a
gtest/1 8beca48166 
- variant build with clang-macos/9.0.0 added
H5hut/2 196f9c7774 
- variant for 2.0.0rc4 compiled with clang-macos/9.0.0 added
H5hut/build b18cb02ed1 
- compile without Fortran support if we use clang-macos
OPAL/1.6 dd3180b70c 
- release 1.6.1 as stable
- variant for 1.6.2 added
OPAL/build b319dbc899 
- fix SOURCE_URL
trilinos/12 9ab16a388c 
- variant for 12.12.1 compiled with clang-macos/9.0.0 added
vim/8 f203524298 
- added Python/2.7.14 as build dependency
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks be61044aad
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 57007afb88
elegant: README.md added 0d15055393
Update README.md 14606e2cd1
Add gcc 8.1.0 113b85ca31
Add openmpi/3.0.1 for gcc/8.1.0 7bf2e499c8
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 6ab7d87953
Update README.md 4ca64a762d
Mark gcc/8.1.0 unstable as hdf5_serial/1.10.2 cannot compile and my own program produces bad output:wq fb15e83d4a
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks e6f135d056
Mark openmpi/3.0.1 for gcc/8.1.0 as unstable, because the compiler is unstable cd39486669
Update README.md e7923a4992
Update README.md 63ead647ed
Update README.md 36cd7b5d91
Update README.md 5961aea2cf
H5root: variant with gcc/7.3.0 added 3c78bf6a73
openmpi: variants for 3.0.1 with gcc/5.5.0,6.4.0,7.3.0 added a4d8a90ef6
openmpi/build: enable build of static libraries 6dfc24b707
OPAL: variant for OPAL/2.0.0rc2 added f65d1133eb
OPAL/build: cf86827839 
- SOURCE_URL fixed
- enable DKS on version < 2 only
- gcc/7.3.0 as supported compiler added
elegant: typo in modulefile fixed bead773bfa
Python/build: do not build pandas module 3d83003e9c
vim/build: Python support enabled e5091f6df9
merger conflicts resolved ff09d9f9d0
OpenBLAS: variants for version 0.2.20 with gcc/5.5.0,6.4.0 added a980654315
boost/variants: 91b1d8eb1c 
- release 1.62.0, 1.64.0, 1.66.0 and 1.67.0 as stable
- added variants: 1.66.0 with gcc/5.5.0,6.4.0 and 1.67.0 with gcc/5.5.0,6.4.0,7.3.0
gsl/variants: 21cfdc4aef 
- release version 2.2.1, 2.4 as stable
- version 2.4 with gcc/5.5.0, 6.4.0 added
gtest/variants: bc79a17b73 
- version 1.7.0 with gcc/5.5.0,6.4.0 added
hdf5_serial: 12f38165ed 
- version 1.10.2 with gcc/5.5.0,6.4.0,7.3.0 and intel/18.2 added
- release old versions as stable
- fix SOURCE_URL in build script
mpich/variants c3416f4d41 
- release 3.2.1 with intel/17.4 as stable
openmpi/variants: f937c8c973 
- variants added for gcc/5.5.0,6.4.0, 7.3.0 to versions 1.10.7,2.1.2,3.0.0
- version 2.1.3 and 3.0.1 with gcc/5.5.0,6.4.0,7.3.0 added
root/variants 285d6d2741 
- version 6.12.06 with gcc/5.5.0,6.4.0 added
- versions < 6.12.06 released as stable
root/build: 6138856a1d 
- try to install Oracle instant-client libs only if available
Python/build 760a791bfa 
- do not compile pandas module
perl 2d56e7795f 
- release 5.26.1 as stable
asciidoc: baf5e279eb 
- release 8.6.9 as stable
update_releases 0ff2f41874 
- first version of script to update releases according the variant files
openmpi/variants: conflicts resolved 0a6ae2bb83
Update README.md 462b8d97cd
openmpi/3.1.1 for gcc/8.1.0 31d4a0d78f
lammps/files/lammps-2018.3.tar.gz added 4c760838f4
netcdf/build reviewd, build Fortran interface 443b3b092e
mpc: review, variant for 1.1.0 with gmp/6.1.2 and mpfr/4.0.1 added 16c0a5b676
mpfr: version 4.0.1 added 249b5e7315
lammps/build reviewed d5b59c1a96
emacs/25/variants: release version 25.3 as stable 12f9f2466e
gnuplot: build-script reviewed, version 5.2.4 added to variants d88ea6b846
changes merged 58816415d1
lammps-2018.3.tar.gz moved to repository Pmodules/download 7189810a8d
hdf5/1.10.2 for openmpi/3.0.1 and gcc/7.3.0 54586b75c8
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks de671afc4f
directory 'openmpi/3.0' renamed to 'openmpi/3'; gnuplot variants moved to 'files' directory 706d0e947a
emacs: '25/variants' moved to 'files/variants' and version 26.1 added 70479b687a
gnuplot: change shebang of modulefile to '#%PModule' 4a86bd5aa4
refactor variable names according to changes in Pmodules/0.99.15 in build-scripts of group 'Tools' 5e318adcb3
refactor variable names according to changes in Pmodules/0.99.15 in build-scripts of group 'System' 0d17f4f28b
cctools added, still work in progress b674162f07
refactor variable names according to changes in Pmodules/0.99.15 in build-scripts of group 'Programming' 0f6f00e751
opt-pilot/README.md added 93d38b3daa
refactor variable names according to changes in Pmodules/0.99.15 in build-scripts of group 'OPAL' a1b9c0b9cd
openmpi/3.0.0 with gcc/7.3.0 released as stable f62924c8f3
refactor variable names according to changes in Pmodules/0.99.15 in build-scripts of group 'Compiler' b53aaf92a5
refactor variable names according to changes in Pmodules/0.99.15 in build-scripts of group 'Libraries' 8c5d93f59b
refactor variable names according to changes in Pmodules/0.99.15 in build-scripts of group 'MPI' d1b712b976
refactor variable names according to changes in Pmodules/0.99.15 in build-scripts of group 'MX' aa011bcce7
refactor variable names according to changes in Pmodules/0.99.15 in build-scripts of groups 'HDF5' and 'HDF5_serial' 7168076c50
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 3502c7d7d5
parallel-netcdf added 09943de203
ioapi added 2fafd58626
ioapi/build: reviewed b2a283ba1c
'pbuild::build' has been renamed to 'pbuild::compile' in version 0.99.15 c5e0f8bb79
atlas/3/variants: add binutils as dependency to version 3.10.3 with gcc/7.3.0 f3dce9c25d
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks dddfc97493
netcdf: variants file splitted c064c85e85
netcdf: variant for version 1.9.0 with gcc/7.3.0, openmpi/3.0.1, hdf5/1.10.1, parallel-netcdf/1.9.0 added 049c33eee6
netcdf: fixes in compilation for Linux: set {LD_}LIBRARY_PATH to libnetcdf. This is required for the Fortran build. de6b5731b1
parallel-netcdf: variant for version 1.9.0 with gcc/7.3.0, openmpi/3.0.1, hdf5/1.10.1 added c41f37e10c
parallel-netcdf: set download URL with designated function 4cd235af3f
ioapi: variant for version 3.2 with gcc/7.3.0, openmpi/3.0.1, hdf5/1.10.1, netcdf/4.6.1, parallel-netcdf/1.9.0 added f92c394c8f
ioapi: Linux support added b93a68c69a
openmpi: double entry removed in variants c782b5bfbc
ioapi: install *.EXT and *.MOD into include directory 4cb54de1a9
hdf5: added a variant for 1.10.1 with gcc/7.3.0 and openmpi/3.0.1 for Linux 65047a7b8b
nmap: reviewed 371c3ad181
patchelf: reviewed c56a54576e
patchelf: reviewed af273e29f8
openmpi 3.1.1 for gcc 8.2.0 e51f834484
gcc 8.2.0 153984ad29
hdf5_serial/1.10.2 for intel/18.3 436efa3a5e
Comment for adjusting localrc file 16492b354f
- trilinos moved from group MPI to HDF5 a79bb9bc3e 
- OpenBLAS, mpich, CUDA variants files moved to 'files' directory
- obsolete 'config/versions.conf' removed
OpenBLAS ea8396ab9a 
- use use-flags for variant supporting OpenMP
OpenBLAS_OMP 904c2969a8 
- removed, merged with OpenBLAS module
pbuild::set_docfiles() renamed to pbuild::install_docfiles ca84474aac
atlas c56124bbd0 
- variant for version 3.10.3 with use-flag 'haswell' added
atlas 6ae3b28c95 
- use pbuild::set_download_url in build script
- use default configure function
boost 3e1dbe34ab 
- variant for version 1.68.0 with gcc/7.3.0 added
gsl d2770396c4 
- variant for version 2.5 with gcc/7.3.0 added
hdf5_serial 53ffcf788b 
- variant for version 1.10.2 with pgi/18.5 added
hdf5_serial 1e41553ee0 
- build-script reviewed
mpich 7c5588821e 
- variant with use-flag 'merlin' added
- build-script reviewed
openmpi fc87c74c85 
- variant for version 3.1.2 with gcc/7.3.0 added
openmpi c28caec2c1 
- build-script reviewed
H5hut f0c78f381d 
- variant for version 2.0.0rc4 with gcc/7.3.0, openmpi/3.1.2, hdf5/1.10.3 added
ioapi 70ba7e85ef 
- build script reviewed, support for PGI compiler added
- vrariant for PFI compiler added
netcdf bebd355b8b 
- build-script reviewed
- variant for version 4.6.1 with pgi/18.5, pgi-mpi/18.5, hdf5/1.10.1, parallel-netcdf/1.9.0
parallel-netcdf ed8d263cbb 
- build-script reviewed
- variant for version 1.9.0 with pgi/18.5, pgi-mpi/18.5, hdf5/1.10.1 added
trilinos 1d48542e8b 
- build-script reviewed
trilinos f266fe686b 
- variant for version 12.12.1 with gcc/7.3.0, openmpi/3.1.2, hdf5/1.10.3 added
serial IOAPI 3811160e0d 
- added
serial netCDF 42f5341810 
- added
gmp 716641894b 
- build-script reviewed
- build library with -fPIC
- variant 6.1.2-1 added
libtasn1 2c710af172 
- added
nettle 4851c3cf93 
- added
pcre, SuperLU_DIST 9b5dba35f0 
- build-script reviewed
MPI/boost 874657977a 
- added
MPI/hdf5 4cb96ae9d5 
- release all variants for Darwin as stable
MPI/hdf5 faf7332598 
- variant added for version 1.10.1 with  pgi/18.5, pgi-mpi/18.5
- variant added for version 1.10.3 with gcc/7.3.0, openmpi/3.1.2
- variant added for version 1.10.3 with ntel/17.4, intel-mpi/17.4
MPI/hdf5 3ea151daa4 
- build-script reviewed
MPI/lammps 7f40868341 
- build-script reviewed
MPI/parmetis dada9a1bd7 
- build-script reviewed
- variant for version 3.2.0 with gcc/7.3.0, openmpi/3.0.1 added
- variants for version 4.0.3 with gcc/7.3.0, openmpi/3.0.1,3.1.2 added
Tools/gnutls 3ecdc2615b 
-added
Tools/xrlib 22bf290ee9 
- added
Tools/openjpeg 783c3dc0ab 
- added
Tools/gnuplot b30b0f40cb 
- build-script reviewed
- shebang in modulefile fixed
Tools/emacs 0284379d31 
- build-script reviewed
- variant for version 26.1 added
Tools/doxygen 27982702e5 
- added
System/pkg-config 9883846944 
- added
System/mxm b21eb545ec 
- added
Programming/ld64 c54468c124 
- build-script reviewed
Programming/cuda 92a1407538 
- build-script reviewed
- variant for version 9.2.148 added
Merge remote-tracking branch 'origin/master' a6f04545c8 
# Conflicts:
#	Compiler/hdf5_serial/1/variants.Linux
#	Compiler/openmpi/3/variants.Linux
several variants files moved to 'files' directory c0468d7bd1
Tools/xmlto 346f20929e 
- build-script reviewed
- special variants file for maxOS required
Tools/openssl 42d8c7944d 
- build-script reviewed
Compiler/openmpi, HDF5/trilinos, System/pkg-config, Tools/gnuplot, 83c751e699 
- check of hash-sum fixed in build-scripts
Tools/git: 2ee06dfada 
- build-script reviewed
- variant for version 2.19.1 added (but doesn't compile on macOS due to problems with xmlto)
Tools/asciidoc 441ffbe8e5 
- build-script reviewed
System/gettext f9a3d3b77b 
- added
System/getopt ea37f47348 
- added
System/filebench f2f8c2997d 
- reviewed
Programming/perl 92ea26b47a 
- reviewed
Programming/Python 8c7f74d4d2 
- build-script reviewed
MPI/hdf5 4fe07cd255 
- some strange comments removed in build-script
Compiler/SuperLU 94ab320acc 
- reviewed
build-scripts reviewed b74fd7bce4
System/mxm: set use-flag 'merlin' 25d26c0fbd
README.md added 05905cf240
Update README.md 5a719bc9f5
Update README.md c7d5e0de97
Update README.md 8f5529a744
build-scripts for UMFPACK and eigen reviewed, variants with gcc/7.3.0 added acf1cad58b
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 3a7d3cfd3d
first try with DIALS (no complilation) 2296e104fd
added README.md e438f8a42b
trying to make it working 31b3df6831
Added SandBox/gromacs 63c6b44461
almost working version eaf48bb10f
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks baec50c3eb
obsolete files 'with_modules' removed c2a9db40dc
MPI/hdf5: call to 'pbuild::make_all()' removed in build-scripts 27158e5123
OPAL/opt-pilot: 9d067a6f42 
- build-block removed
config/Pmodules.conf removed
Gromacs 2018.3 MPI, remove Gromacs from SandBox 0b52dac4c6
Adaptions to Pmodules 0.9.16 e1f7292d71
openmpi/3.1.2 for gcc/8.2.0 and intel/18.4 972313186c
hdf5_serial/1.10.4 for gcc/8.2.0 and intel/18.4 78b48960bf
New lammps 2018.11_merlin 83aac7f8c7
Added qe/6.3 Quantum Espresso fb8eca99c8
Added Quantum Espresso 969dab3d53
Added package KSPACE for LAMMPS 1a8cae91b6
cleanup of variants 34dc7fa6ae
several variants added to Compiler/openmpi/*/variants.* 1a8728bfcc
Compiler/openmpi build script reviewed, install missing libraries a1f782fb2c
installation of doc file in Compiler/hdf5_serial/build fixed c4323b6b81
conflict resolved 1afb9f4a6c
clhep build-block added 3bff336a43
geant4 build-block added 98f00a965f
Compiler/H5root/build: reviewed f1e6c6330a
Compiler/atlas/build: reviewed be7aa9ea31
Compiler/boost/build: reviewed 28885cede7
Compiler/boost: variant for 1.68.0 with gcc/8.2.0 added 69078eabe6
Compiler/hdf5_serial: variant for 1.10.4 with gcc/7.3.0 added for macOS f9ca85a532
Compiler/mpich/build: reviewed be018134b3
Compiler/mpich/files/variants: variants added for 3.2.1 and 3.3 0d2d446484
Compiler/root/build: reviewed 8e88c8d9ec
Tools/tmux: build-block added b2b69fe49c
Tools/ncview: build-block added 1ece6f0a42
MPI/OPAL: consolidate variants files b52f4f1e30
MPI/OPAL: set release of old release candidates to deprecated 51e38ec9dc
Compiler/geant4: install data files fb067ba52a
Compiler/geant4: version renamed from 10.05 to 10.5 ff3f58f6af
HDF5/H5hut: version 2.0.0rc5 added fc2dc4fd58
HDF5/trilinos: new versions and variants added 0e60e39c06
HDF5_serial/H5hut: version 2.0.0rc5 added e26d6657a4
HDF5_serial/netcdf: variants for 4.6.1 with hdf5 1.10.3 added 5b5dfb5456
Libraries/gmp: versions 6.0.0, 6.1.0, 6.1.1, 6.1.2 added f7b06202a9
Libraries/mpc: build-script reviewed 85c440a448
Libraries/mpc: variant with PIC-compiled gmp added 9206d66f62
Libraries/mpfr: build-script reviewed 00b6a05e6c
Libraries/mpfr: version 4.0.0, 4.0.1 added, use PIC-compiled gmp for 4.0.1-1 aa63f7c52e
Libraries/libevent: added cb0f970631
Libraries/libexpat: added 7f5a563716
Libraries/libpng: added bfb8275b9a
Libraries/udunits: added 6b3efd14df
Libraries/zlib: added 8823b1affc
MPI/boost: build without Python, patch required for macOS and GCC added 5e57fdf370
MPI/amrex: added 977f6ca911
MPI/boost: version 1.68.0 added build without Python 9ddcbfd23a
MPI/hdf5: version 1.10.4 with gcc/7.3.0, openmpi/3.1.3 for macOS added ac87ed23c6
MPI/hdf5: version 1.10.4 added with various gcc versions, openmpi/3.1.3 and mpich/3.3 5ff9ee5021
MPI/hdf5: version 1.8.20 added with various compiler MPI combinations 64f90d7ddd
MPI/hdf5: bugfix in build-script 7e51d8de14
MPI/parametis fixes and new versions/variante 705d5034ba 
- build-script reviewed
- variants for gcc/73.0 and openmpi/3.1.3, mpich/3.3 added
Programming/automake: version 1.16.1 added eeb105c0c8
Programming/cmake: fixes and new version 3.13.3 d807f1d0f7 
- use system libcurl on all systems, otherwise https doesn't work
Programming/gcc: version 5.5.0 added f2bd836ec2
Programming/libtool: fixes in build-script and new variant 930931d2aa 
- URL in build script fixed
- new variant 2.4.6-1 with automake/1.16.1
Programming/m4: fixes in build-script and new version 1.4.18 a68cc147ee 
- do not set CC to gcc
Compiler/geant4: 10.05 variants removed, new name is 10.5 1ec0e8c5ae
MPI/OPAL: variant OPAL/1.4.0rc1 removed e190a7751f
Programming/autoconf: variants are now in files directory e0cd5f7329
MX/DIALS: prefix specification fixed in install function 19d8ba0e0a
LAMMPS moved to stable 008f79a1bf
gcc/7.4.0 fdf7af655b
pgi-mpi module added 9c639f8953
conflicts resolved c268307d74
hdf5_serial: enable Fortran bindings 2a3a99fb16 
Fortran was not enabled by accident!
hdf5_serial: version 1.8.21 and 1.10.5 added, releases reviewd 45bbc1b62e
openmpi/3: releases reviewed, variants for gcc/6.5.0 and 8.3.0 added 4a9c6f27f7
mpc: variant added with mpfr/4.0.2 de737f253e
mpfr: version 4.0.2 added 5c702e8b91
nettle: set release of version 3.4 to stable cb5798eda5
MPI/hdf5: releases reviewed 177455fcb0
Programming/gcc: go added to list of to be compiled languages b407bb164f
Programming/gcc: all variants merged into one file 7d20b5b4b3
Programming/intel: build-block added 4d0c99426c 
no build-block was available, README.md should be written
Programming/pgi: build-block added dca59ebc2c
Tools/emacs: version 26.1 released as stable c7b7e10b46
Tools/gnutls: we don't have to call 'module use System' 878cb256f0
Tools/gnutls: version 3.5.19 released as stable 8e416b1438
Tools/pkg-config: moved from 'System' to 'Tools' 691c64ee77
Tools/pkg-config: version 0.29.2 released as stable 60cbabe27a
Tools/vim: version 8.0.586 released as stable 28ef97e2ec
Create crYOLO module 3153fc661b
Merge branch 'crYOLO' into 'master' 837e76602b 
Create crYOLO module

See merge request !1
Initial release of datacatalog module, not yet productive d0c28872d7
Added first official datacatalog version, datasetIngestor only 91f4b5220f
add HDF5_blosc pmodule 268f431cbe
variants files of Tk and cmake moved to .../files 0bbcb50505
Compiler/openmpi: use brace expansion in variants files 1c8f8d91f8
Libraries/libevent: not required pbuild::make_all removed 33ecb931d1
Libraries/libevent: version 2.1.8 released as stable 66e48960a0
Programming/Python: version 2.7.17 added 63f1b2e0a0
Programming/Tcl,Tk: version 8.6.9 added ee9eda1489
Programming/cmake: version 3.14 added, variants files moved ce521ce985
Programming/gcc: enable 'go' only if version >= 8 abb283b9ef
Programming/perl: version 5.28.1 added ce8de358ca
Tools/asciidoc: version 8.6.9-1 with Python 2.7.16 added f7bb55c8d7
Tools/coreutils: added dcee423c87
Tools/gettext: added 8d6743cb30
Tools/git: version 2.21.0 added, fix in build-script c08d729bd8
Tools/gnuplot: version 5.2.6 added 02f67d17db
Tools/openssl: version 1.0.2r added a4f050be61
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 33658f2eff
Merge remote-tracking branch 'origin/hdf5-blosc' 892dbf0d98
HDF5_serial/HDF5_blosc: review and fixes da13fe1560 
- build module on Merlin with appropriate use-flag
- 'blosc' is used as external project which requires AVX2
- set rpath in filter libs to ""
Start anaconda build module 3171ebcfda 
Not currently tested pending AFS volume creation.

Derives from EM/crYOLO.
HDF5_serial/HDF5_blosc: set HDF5_PLUGIN_PATH to /lib64 cdec5f49ad
Compiler/openmpi: all variants merged and moved to 'files' 9248f41176
Compiler/openmpi: version 4 support added to build-script, install system lib in 'lib/fallback' e578abbde7
Compiler/hdf5_serial: fixes in configure options 466adc2f28 
'--enable-fortran2003' has been removed in 1.10
Compiler/hdf5_serial: all variants for linux merged into singel file 284c277c2f
Starting fftw module (BROKEN) ef321a2920
Removing python installation from anaconda build script. f06815bd3d 
This would be better done in dependent modules.
Fix fftw build script f72dacb7b8
Adding fftw/gcc7.3.0 variant 2b7aa706e8
Update anaconda module 8ce24107fc 
- Update build script with best practices for variables, download
  location, etc.
- Format modulefile info
- Activate base environment by default
- More robust unloading script
Move fftw to MPI category 80c0f57986
Reinstall fftw into MPI category e44ae11c70 
- Minor Updates based on Achim's suggestions.
Merge branch 'fftw' into 'master' 921e753b44 
FFTW3

See merge request Pmodules/buildblocks!3
Merge branch 'anaconda' into 'master' 9fea418615 
Anaconda

See merge request Pmodules/buildblocks!2
Added IOR 6c3811a98f
Added IOR ab00a45e66
Added IOR, and GPFS libraries 5.0.3-2 8dfb2be152
patch for macOS 14.4 and gcc 8 added 1a544fa84e
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 66b21329c8
Resolve "replace set-family with module-addgroup in modulefile 17e464f642
Merge branch '5-replace-set-family-with-module-addgroup-in-build-scripts' into 'master' ac96cfdddd 
Resolve "replace set-family with module-addgroup in modulefile

Closes #5

See merge request Pmodules/buildblocks!4
clang-macos module added 1e30428167
Merge branch '6-write-dummy-build-block-for-clang-on-macos' into 'master' 668bef542e 
Resolve "write dummy build-block for Clang on macOS"

Closes #6

See merge request Pmodules/buildblocks!5
variant for openmpi/3.1.3 with clang-macos/10.0.1 added 6b31320895
variant for openmpi/4.0.1 with clang-macos/10.0.1 added b6c906c158
Merge branch '7-for-macos-add-openmpi-3-1-3-variant-with-clang-macos-10-0-1' into 'master' 1e3fe58b61 
Resolve "macOS: add openmpi/3.1.3 variant with clang-macos/10.0.1"

Closes #7

See merge request Pmodules/buildblocks!6
Updating datacatalog module to 1.1.7 c2e92eca63 
1.1.4 was accidentally upgraded and the old binary does not seem to be available,
so I have removed the 1.1.4 version
penmpi/3.1.4 and 4.0.1 for gcc/7.4.0 df8cc04e79
gcc/9.1.0 8270d0c2f0
Datacatalog deployment for 3 binaries now b4ea676aeb
Add datacatalog/1.1.8 version dc6597cb9d 
Cleaned up the build script a little too.
New version of datacatalog tools 48d493dbf9
Merged changes 012203b2cd
modules for gsl/2.5 with gcc/7.4.0 and gcc/8.3.0 added 0ce4f2c14a
gsl variants are now in sub-directoy files 23beb585b3
unused files removed from gsl module e2a8d4becd
Merge branch '8-gsl-2-5-with-gcc-7-4-0-and-8-3-0' into 'master' 986bfe56cf 
Resolve "gsl 2.5 with gcc 7.4.0 and 8.3.0"

Closes #8

See merge request Pmodules/buildblocks!7
mpich/3.3 with gcc/7.4.0 and 8.3.0 added ebceff0907
Merge branch '9-modules-for-mpich-3-3-with-gcc-7-4-0-and-gcc-8-3-0' into 'master' e94df7025a 
Resolve "modules for mpich 3.3 with gcc/7.4.0 and gcc/8.3.0"

Closes #9

See merge request Pmodules/buildblocks!8
openmpi/3.1.4 for gcc/8.3.0 f07daf3bb0
Python: consolidate variants, version 3.7.3 added ec228a655e
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 66d79dadf9
HDF5_blosc: variant with use-flag '_AVX2' added e6544525de
libungif: fixes 4e776cc95c
MPI/dks: rewrote build-script 5a846868a7
MPI/dks: variant added for newer open-mpi and cuda b5d8a0feb1
System/nmap: released as stable b972862df5
Programming/perl: version 5.10.1 added d4480fcb92
Merge branch '10-build-module-for-perl-5-8' into 'master' 80c3c602c6 
Resolve "build module for Perl 5.8"

Closes #10

See merge request Pmodules/buildblocks!9
System/gettext removed, duplicate of Tools/gettext d8ac8f79cd
Merge branch '11-remove-gettext-from-group-system' into 'master' d4b611aa5f 
Resolve "remove gettext from group System"

Closes #11

See merge request Pmodules/buildblocks!10
issue templates added 0cc3ceb6d8
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 9981462900
review issue templates 8b115bc651
review issue templates f17df6d107
new anaconda build and modulefile + conda repo structure ff62c5924b
Merge branch '13-create-new-anaconda-module' into 'master' 49edb03b82 
Resolve "Create new anaconda module"

Closes #13

See merge request Pmodules/buildblocks!11
added environments for jupyterhub and tensorflow e9d01a8a34
Merge branch '13-create-new-anaconda-module' into 'master' 8afcb1a6c9 
added environments for jupyterhub and tensorflow

See merge request Pmodules/buildblocks!13
Update New build-block.md ae21ac8df7
Delete New version.md a9c4cbf444
version 7.80 added, fix in build-script add7ee9a7a
Merge branch '15-new-version-of-nmap' into 'master' c90b61558b 
Resolve "new version of nmap"

Closes #15

See merge request Pmodules/buildblocks!15
TclTk build-block added 646636563a
xz module added 06ca1a8c8f
Added Gromacs 2019 with GPU support 278d04929a
gcc/9.2.0 8d295d0040
Merge branch 'stadler_h' into 'master' 5d3ae0605a 
gcc/9.2.0

See merge request Pmodules/buildblocks!17
variants for Python 2.7.16-1 and 3.7.3 added, fixes in build-script 6f9b00b106
Update .gitignore 56254dbdd6
Add new file 7b1cf7bea3
Update New variant.md 3e209bfd03
build-block for libxml2 added 73d5fddd01
quotes in help text removed c70235271b
fix for download URL and merlin6 specific builds a8eee2461d
Merge branch '19-openmpi-builds-for-merlin6-rhel-7-6' into 'master' 0b75e0e986 
Resolve "openmpi builds for merlin6 RHEL 7.6"

Closes #19

See merge request Pmodules/buildblocks!21
Added Gromacs 2019 with GPU support 08c8769fb6
use gettext module, fixes for creation of documentation 77b36d55eb
variants file for macos 10.14 added b57f7aa783
set group in build-script 1788b25efa
Merge branch '22-getopt-module-group-not-set-in-build-script' into 'master' 245c6d9c80 
Resolve "getopt module: group not set in build-script"

Closes #22

See merge request Pmodules/buildblocks!23
variant xmlto/0.0.28-1 with libxml2 added to macos10.14 variants f807d9da86
xmlto: variants file for macos renamed a7eb0eb06c
Merge branch '23-new-variant-xmlto-with-libxml2' into 'master' 382ca4a135 
Resolve "new variant xmlto with libxml2"

Closes #23

See merge request Pmodules/buildblocks!24
fixes in xmlto build-script 6985dc1e67 
- use Macports xsltproc
- cp getopt from getopt module
Merge branch '24-xmlto-use-xsltproc-from-macports-and-getopt-from-getopt-module' into 'master' c924a21e1c 
Resolve "xmlto: use xsltproc from Macports and getopt from getopt module"

Closes #24

See merge request Pmodules/buildblocks!25
asciidoc: build variant 8.6.9 with Python/2.7.16-1 ff0c1c9f5d
new variants file for macos 10.14 includes perl/5.30.0 79a4eb02a6
lammps using openmpi compiled for merlin6 a3b24b934e 
- based on stable_7Aug2019.tar.gz
Merge branch '20-lammps-needs-to-be-recompiled-with-openmpi-for-merlin6-rhel-7-6' into 'master' 6791f61b4b 
Resolve "lammps needs to be recompiled with openmpi for merlin6/RHEL 7.6"

Closes #20

See merge request Pmodules/buildblocks!29
test for conda and reload env if required d0ebdc333d 
needed for cleanup in subshells
Merge branch '27-unload-of-anaconda-module-failing-in-subshells' into 'master' a2d8abc2a2 
Resolve "unload of anaconda module failing in subshells"

Closes #27

See merge request Pmodules/buildblocks!30
variants for gcc/6.3.0 and gcc/9.1.0 added 039fab2b2d
variants renamed to variants.rhel6 0ba193b2bb
Added Gromacs 2019 with GPU support 154daf6890
Merge branch '28-new-variants-for-gsl-for-linux' into 'master' f4730a2f9c 
Resolve "new variants for gsl for Linux"

Closes #28

See merge request Pmodules/buildblocks!31
Deploy fftw/3.3.8-1 ebf05cf819 
- Single (sp) and double precision (dp) variants based on the use flags
- Add merlin & merlin6 flags to indicate that the software depends on
  merlin-specific architecture features (SSE and AVX)
- Depend on most recent OpenMPI compiled for merlin5/merlin6
variants for macos10.14 cleaned up 76f4927cca
clang-macos: version 9.0.0 amd 10.0.1 released as stable 732feb2e47
Merge branch '30-clang-macos-release-version-9-0-0-as-stable' into 'master' 6b4c5d898b 
Resolve "clang-macos: release version 9.0.0 as stable"

Closes #30

See merge request Pmodules/buildblocks!35
Merge branch '29-cleanup-gal-module-for-macos' into 'master' 090d16ee0e 
Resolve "cleanup gsl modules for macOS"

Closes #29

See merge request Pmodules/buildblocks!34
perl for rhel6: variant 5.30.0 added faa45e8ba0
Merge branch '26-new-variant-for-perl' into 'master' cdea2c0e02 
Resolve "new variant for perl"

Closes #26

See merge request Pmodules/buildblocks!28
xz: 5.2.4 added for rhel6 and macos10.14 14302dd481
xz: 5.2.4 added for rhel6 and macos10.14 94b7f23dad
Merge branch '14-xz-module' into 'master' cc01666173 
Resolve "xz module"

Closes #14

See merge request Pmodules/buildblocks!14
new variants file for rhel6, support for macos removed de3d4df054
TclTk: fix wrong setting of sym-link for wish bdfbcdfdc3
TclTk: fixes in main build script 17cb4875c0
git: variants renamed to variants.rhel6 206615b5a4
git: variants for RHEL6 cleaned up c43e079535
TclTk: variant 8.6.9 released as stable a8461fc47b
Merge branch '16-new-build-block-for-combined-tcl-tk' into 'master' 568c62574a 
Resolve "new build-block for combined Tcl/Tk"

Closes #16

See merge request Pmodules/buildblocks!16
asciidoc: variants for macos10.14 added d981753194
asciidoc: variants file renamed to variants.rhel6 e8fe00de48
asciidoc: cleanup variants.rhel6 d391e81310
Merge branch '25-new-variant-for-asciidoc' into 'master' 971cf4bcbb 
Resolve "new variant for asciidoc"

Closes #25

See merge request Pmodules/buildblocks!26
git: 2.21.0 released as stable for macos10.14 331cf0eed5
Python: h5py added 43a29fe079
libxml2: 2.9.9 released as stable for macos10.14 e172ef7064
Merge branch '18-new-build-block-for-libxml2' into 'master' 449f74f3bf 
Resolve "new build-block for libxml2"

Closes #18

See merge request Pmodules/buildblocks!20
removed dask from datascience_py36 due to errors 5148aaf596
added chaospy on request by A. Adelmann fee0460501
TclTk: get module compiled under macOS, fixes for Linux 1d3b0199bd
Merge branch '31-tcltk-fixes-for-macos-and-rhel6' into 'master' 78fc77fad4 
Resolve "TclTk: fixes for macOS and RHEL6"

Closes #31

See merge request Pmodules/buildblocks!36
bigger update of python environments for anaconda/2019.07 ba7f38d99d
Merge branch 'master' into 33-update-python-environments-provided-by-anaconda-2019-07 b28c5c6a94
Merge branch '33-update-python-environments-provided-by-anaconda-2019-07' into 'master' a5cbfced07 
Resolve "Update python environments provided by anaconda/2019.07"

Closes #33

See merge request Pmodules/buildblocks!37
git: macOS ariant for version 2.23 added 31ef568d98
Python: variants for RHEL6 cleanup ad48adf912
Python: fix configuration options for Python 3.0 - 3.6 28888d2a6f
TclTk: build shared libraries on Linux 093a1f7ad1
Merge branch '34-tcltk-compile-with-enable-share' into 'master' 09779b4cee 
Resolve "TclTk: compile with --enable-share on Linux"

Closes #34

See merge request Pmodules/buildblocks!39
Python: included modules added to help text a7a2ecc51f
Python: configure fixed, install some shared libs in module c8c78226c7 
- use same configure args for Python 2 and Python 3 <= 3.6
- Tcl/Tk not found fixed
- lzma not found fixed
- install Tcl/Tk and OpenSSL libs in module
- TclTk and openssl are not required at run-time any more
- install system libffi in module, closes #32
Python: build-script reviewed 4fbc55ca52
Python: relase versions 2.7.16, 3.6.3, 3.7.3, 3.7.4 as stable for Linux 7221ff2ffc
Python: variants file for macOS added b2991eda54
Python: simple tkinter script added c6253e73b7
Merge branch '17-new-python-variants' into 'master' 3ee3562ba4 
Resolve "new Python variants"

Closes #32 and #17

See merge request Pmodules/buildblocks!19
asciidoc: build with Python/2.7.16 71fc50f251
asciidoc: version 8.6.9-2 released as stable for macOS 257d9f40ee
Merge branch '25-new-variant-for-asciidoc' into 'master' faeaa46c70 
Resolve "new variant for asciidoc"

Closes #25

See merge request Pmodules/buildblocks!38
xmlto: version 0.0.28-1 released as stable for macOS 37f3119dcc
xmlto: generic variants file renamed to variants.rhel6 0fd0299dd9
Merge branch '24-xmlto-use-xsltproc-from-macports-and-getopt-from-getopt-module' into 'master' d00053a4e7 
Resolve "xmlto: use xsltproc from Macports and getopt from getopt module"

Closes #24

See merge request Pmodules/buildblocks!41
git: versions 2.21.0, 2.23.0 released as stable for macOS c3a5e344f7
Merge branch '21-new-variant-git-2-21-0' into 'master' 3ba6ea2254 
Resolve "new git variants"

Closes #21

See merge request Pmodules/buildblocks!22
implement PATH cleaning in pure bash 9e2060c297 
one should not mix tcl cleaning with bash fragments written to
stdout, if the modify the same state variables.
Merge branch '36-fix-unloading-of-anaconda-environments-mixing-bash-tcl-in-unloader' into 'master' 27dcc1e535 
Resolve "fix unloading of anaconda environments (mixing bash & tcl in unloader)"

Closes #36

See merge request Pmodules/buildblocks!42
fixing erroneous statement left from debugging 389ea8acfe
Merge branch '36-fix-unloading-of-anaconda-environments-mixing-bash-tcl-in-unloader' into 'master' 03dc93505a 
fixing erroneous statement left from debugging

Closes #36

See merge request Pmodules/buildblocks!43
zlib: version 1.2.11 released as stable for RHEL6, macSO10.14 e37af655ca
Merge branch '38-zlib-version-1-2-11-for-rhel6-and-macos10-14' into 'master' 7c649ed16b 
Resolve "zlib: version 1.2.11 for RHEL6 and macOS10.14"

Closes #38

See merge request Pmodules/buildblocks!45
gcc: patch for gcc 8 on macOS moved 56cbc1923a
gcc: build-script reviewed f290ac0b9b
gcc: cleanup variants files for RHEL6 and macOS10.14 36e52a43bc
Merge branch '40-gcc-review-build-script-fix-to-compile-gcc-8-3-0-on-macos' into 'master' 9fed243224 
Resolve "gcc: review build script, fix to compile gcc 8.3.0 on macOS"

Closes #40

See merge request Pmodules/buildblocks!46
boost: variants renamed to variants.rhel6 449a04e5ec
boost: build-script reviewed 9cd88bd9c5
Merge branch '37-boost-review-build-script' into 'master' 320448ecb0 
Resolve "boost: review build script"

Closes #37

See merge request Pmodules/buildblocks!44
boost: cleanup of variants files 477abecd3f
Merge branch '41-boost-cleanup-variants-files-for-rhel6-and-macos10-14' into 'master' ce4991f8ad 
Resolve "boost: cleanup variants files for RHEL6 and macOS10.14"

Closes #41

See merge request Pmodules/buildblocks!47
OPAL: variants file for Linux/RHEL6 cleaned up 6291e00cf6
Merge branch '42-opal-cleanup-variants-for-linux-rhel6' into 'master' 398dc99efe 
Resolve "OPAL: cleanup variants for Linux/RHEL6"

Closes #42

See merge request Pmodules/buildblocks!48
OPAL: version 2.0.2 released for RHEL6 f7ebd19625
Merge branch '43-opal-release-version-2-0-2-for-linux-as-stable' into 'master' f2204e4fc3 
Resolve "OPAL: release version 2.0.2 for Linux as stable"

Closes #43

See merge request Pmodules/buildblocks!49
Create initial NAMD/2.13 module 99f2c8159e 
The binary build lives in Tools/NAMD; the source build will be
in MPI/NAMD.
Add NAMD/2.13_gpu variant 6f9adf7fb3 
Switched the non-gpu variant to the non-cuda version
Merge branch 'namd' into 'master' b43a57c65f 
Add NAMD module

See merge request Pmodules/buildblocks!51
gnuplot: disable LateX and Qt e4df57e0fb
gnuplot: version 5.2.7 added 8f67078cdb 
- versions 5.2.6 and 5.2.7 released as stable
Merge branch '48-gnuplot-new-versions-5-2-6-5-2-7' into 'master' bb195ef2bb 
Resolve "gnuplot: new versions 5.2.6, 5.2.7"

Closes #48

See merge request Pmodules/buildblocks!52
gsl: new variant for version 2.5 with intel/19.4 added e72e11b637
Merge branch '49-gel-new-variant-version-2-5-with-intel-19-4' into 'master' 3aec4389ba 
Resolve "gsl: new variant: version 2.5 with intel/19.4 for RHEL6"

Closes #49

See merge request Pmodules/buildblocks!53
libxc: new build-block added d3cbd35bc1
libint: new build-block added 3eebd00aff
libxsmm: new build-block added 6eb45fb08c
impi: new build-block added c355e201eb
Merge branch '50-impi-new-build-block-for-impi' into 'master' 7ad01230e5 
Resolve "impi: new build-block for impi"

Closes #50

See merge request Pmodules/buildblocks!56
elpa: new build-block added b3e7609c1c
cuda: released all available versions as stable 4b6c16f988
Merge branch '51-cuda-release-versions-as-stable' into 'master' fdfdfd0c20 
Resolve "cuda: release versions as stable"

Closes #51

See merge request Pmodules/buildblocks!59
cuda: released all available versions as stable c00898e715
Merge branch '51-cuda-release-versions-as-stable-2' into 'master' 025cde12bc 
Resolve "cuda: release versions as stable"

Closes #51

See merge request Pmodules/buildblocks!60
libxc: 4.3.4 released as stable 0822d517fd
Merge branch '39-libxc-new-build-block' into 'master' 4f64713b79 
Resolve "libxc: new build-block"

Closes #39

See merge request Pmodules/buildblocks!50
libxsmm: 1.13 released as stable 73ef61a279
Merge branch '44-libxsmm-new-build-block' into 'master' 979e96d2d1 
Resolve "libxsmm: new build-block"

Closes #44

See merge request Pmodules/buildblocks!55
libint-lmax6: 2.6.0 released as stable 31b61d9eba
Merge branch '45-libint-new-build-block' into 'master' e52156f639 
Resolve "libint: new build-block"

Closes #45

See merge request Pmodules/buildblocks!54
elpa: build-block added ff7a127090
elpa: 2019.05.001{_omp} released as stable daca3d9cee
Merge branch 'master' into '46-elpa-new-build-block' 1edc26cbc8 
# Conflicts:
#   MPI/elpa/files/variants.rhel6
Merge branch '46-elpa-new-build-block' into 'master' 8a69b51744 
Resolve "elpa: new build-block"

Closes #46

See merge request Pmodules/buildblocks!57
libxc: permissions of build-script fixed 4d44dee500
Merge branch '52-libxc-fix-permissions-of-build-script' into 'master' a0c3405904 
Resolve "libxc: fix permissions of build script"

Closes #52

See merge request Pmodules/buildblocks!61
Moved gromacs and java to stable e82f6f6359
Added Java in stable repo, was in unstable for some time 81e7fe8afc
Merge branch 'gromacs_gpu' into 'master' 5039cb6118 
Gromacs gpu

See merge request Pmodules/buildblocks!32
Merge branch 'fftw' into 'master' b0472c9320 
Deploy fftw/3.3.8-1

See merge request Pmodules/buildblocks!33
Add relion build script. b5a0300933 
Builds from source based on git.

Currently only gcc/7.4.0 is used. Better performance is reported with
intel icc and MKL, but this would require additional openmpi variants.

Variants for 3.0.8 and 3.1-beta (780dd7b) are installed.
Add Relion README.md 8190b0a6c2
issue templates reviewed 78c106599c
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks edba6f5d0c
gcc: do not build in source tree, cleanup 6ca141f29d
gcc: build 9.2.0 with libisl 254b01dc19
gcc: version 9.2.0 released as stable 6041025cee
Merge branch '53-gcc-9-2-0-build-new-version' into 'master' f71a0d4528 
Resolve "gcc/9.2.0: build new version"

Closes #53

See merge request Pmodules/buildblocks!67
isl: new build-block added c4e7a41e1f
isl/0.21: released as stable 9db7388632
Merge branch '54-isl-new-build-block' into 'master' 2f67d0fef7 
Resolve "isl: new build-block"

Closes #54

See merge request Pmodules/buildblocks!68
gtest: support for version 1.8.1 added 53586401e8
gtest: variants for version 1.8.1 with gcc/{5.5.0,6.4.0,7.4.0,8.3.0,9.2.0} added d7495479e9
gtest: variants file for macOS 10.14 added bd58d5991e
Merge branch '55-gtest-build-new-variants-for-1-8-1-with-gcc-5-5-0-6-4-0-7-4-0-8-3-0-9-2-0' into 'master' 093f70e947 
Resolve "gtest: build new variants for 1.8.1 with gcc/{5.5.0,6.4.0,7.4.0,8.3.0,9.2.0}"

Closes #55

See merge request Pmodules/buildblocks!69
OpenBLAS: variants file for macOS 10.14 added e8cd9a3b3e
OpenBLAS: fix in post-install 17171b1b93
OpenBLAS: version 0.3.7 with gcc/{7.4.0,8.3.0,9.2.0} added 0c409a7a96
Merge branch '56-openblas-new-variants-for-version-0-3-7' into 'master' 945879e791 
Resolve "OpenBLAS: new variants for version 0.3.7"

Closes #56

See merge request Pmodules/buildblocks!70
gsl: 2.6 with gcc/{7.4.0,8.3.0,9.1.0,9.2.0} added 9c9f645981
Merge branch '57-gsl-build-version-2-6-with-current-gcc-versions' into 'master' 45310b1c21 
Resolve "gsl: build version 2.6 with current gcc versions"

Closes #57

See merge request Pmodules/buildblocks!71
Merge branch 'relion' into 'master' 186d4b6572 
Add relion build script.

See merge request Pmodules/buildblocks!64
Check in older anaconda versions. c165270914 
Version 2019.03 was an alpha version but got deployed. This updates it
to use the current modulefile.
Merge branch 'anaconda' into 'master' f88f30cf4e 
Update anaconda buildblock to latest deployment

See merge request Pmodules/buildblocks!65
openmpi: bugfixs in build script 2c72327241
openmpi: use libuc[mpst] from module if not available on system a089d9a44f
Merge branch '58-openmpi-bugfixes-in-build-script' into 'master' b3f8d27702 
Resolve "openmpi: bugfixes in build-script"

Closes #58

See merge request Pmodules/buildblocks!72
openmpi: variants file for Linux renamed to variants.rhel6, cleanup, merlin specific stuff removed e38397e11d
openmpi: variants file for merlin6 added b42387e900
Merge branch '59-openmpi-cleanup-variants-files' into 'master' 5aff191839 
Resolve "openmpi: cleanup variants files"

Closes #59

See merge request Pmodules/buildblocks!73
amrex: variants for 18.07_{2,3}d with gcc/7.4.0 and openmpi/3.1.4 added 86c8b60be4
Merge branch '60-amex-build-18-07_-2-3-d-with-gcc-7-4-0-and-openmpi-3-1-4' into 'master' b12485cc2f 
Resolve "amex: build 18.07_{2,3}d with gcc/7.4.0 and openmpi/3.1.4"

Closes #60

See merge request Pmodules/buildblocks!74
amrex: cleanup release states 303f1f18f7
Merge branch '61-amex-release-modules-as-stable' into 'master' 60531ebb42 
Resolve "amex: release modules as stable"

Closes #61

See merge request Pmodules/buildblocks!75
boost: 1.70.0 with gcc/7.3.0, openmpi/3.1.3 released as stable 99c5fa3b7c
Merge branch '62-boost-release-1-70-0-with-gcc-7-3-0-openmpi-3-1-3-as-stable' into 'master' 38beb4b420 
Resolve "boost: release 1.70.0 with gcc/7.3.0, openmpi/3.1.3 as stable"

Closes #62

See merge request Pmodules/buildblocks!76
boost: variant for 1.70.0 with gcc/7.4.0 openmpi/3.1.4 added a08569a2be
Merge branch '63-boost-build-1-70-0-with-gcc-7-4-0-openmpi-3-1-4' into 'master' 831a187741 
Resolve "boost: build 1.70.0 with gcc/7.4.0 openmpi/3.1.4"

Closes #63

See merge request Pmodules/buildblocks!77
dks: variants for 1.1.2 added 46f8ea5775
dks: variants.rhel6 cleanup 400b226fb7
Merge branch '64-dks-new-variants-for-1-1-2' into 'master' 81381c98df 
Resolve "dks: new variants for 1.1.2"

Closes #64

See merge request Pmodules/buildblocks!78
added jupytest plugin for jupyterhub 7f3cee67da
added plotly and graphviz to anaconda datascience environments f000f49893
added bayesian-optimization package to anaconda datascience_p37 env 4810bd4c7b 
on mail request by virginie.solans@psi.ch
added conda-build to anaconda hpce-tools 083a95b3af 
We should be able to build our own anaconda packages in a centrally
provided environment.
adding xlrd to anaconda envs for pandas/excel compatibility 03cc1e648c
Merge branch '65-update-anaconda-envs-for-xlrd-jupytext-conda-build' into 'master' 0e8e4e9e68 
Resolve "update anaconda envs for xlrd, jupytext, conda-build"

Closes #65

See merge request Pmodules/buildblocks!79
Add MotionCor2 build script 606f3cacaa 
Installation is highly manual. This documents the MotionCor2
installation procedure and automates shared file installation.

Adds 1.2.6 and 1.3.0 variants.
Merge branch 'motioncor2' into 'master' 07246ad9e6 
Add MotionCor2 build script

See merge request Pmodules/buildblocks!80
Add warning in modulefile for admins ef424233ef 
Loading anaconda as an admin on an Auristor system produces a
reminder not to install anything
Merge branch 'anaconda' into 'master' b4fbe6b551 
Add warning in modulefile for admins

See merge request Pmodules/buildblocks!81
Update cryocare environment to work on GPU 17c5710576
Merge branch 'cryocare' into 'master' cc27732bbb 
Update cryocare environment to work on GPU

See merge request Pmodules/buildblocks!83
Add hdf5storage to datascience_* environments 69e45392e8
Merge branch 'hdf5storage' into 'master' 90b528ba11 
Add hdf5storage to datascience_* environments

See merge request Pmodules/buildblocks!84
Move crYOLO paths to config file ab670c0ce2
Document crYOLO/1.5.6_gpu build process 67c09995ae
Merge branch 'crYOLO' into 'master' 1e3bf880ef 
CrYOLO/1.5.6

See merge request Pmodules/buildblocks!86
Add RELION environmental variables to modulefile 51914825a3 
These set many defaults, including external tool paths and GUI
configuration options
Merge branch 'relion' into 'master' c022a928b2 
Add RELION environmental variables to modulefile

See merge request Pmodules/buildblocks!87
hdf5: cleanup variants 4e2620db5b
git: copy libs from GCC to module cd64a83015
git: 3.15.5 added to rhel6 variants ab7006361b
git: rhel6 variants renamed eb43be249c
openmpi: 3.1.4-1_merlin6 added 2bc9e4381c
parmetis: 4.0.3 variant with gcc/7.4.0 and openmpi/3.1.4 added 71a17c62eb
trilinos: cleanup variants 398bc9c9bd
trilinos: make_all removed from build-script 2b790316f8
H5hut: cleanup in build-script 6d1cdcbf7d
H5hut: cleanup variants 8dbc793ae3
hdf5: cleanup variants 664e5159b5
Added Gromacs 2020.2 6d5ad48949
OpenMPI slurm series f3f3a41111
new GCC versions build 846c36ceeb
Merge branch '68-build-new-gcc-versions' into 'master' 995780c143 
Resolve "build new GCC versions"

Closes #68

See merge request Pmodules/buildblocks!88
Update README.md d3c3dc4171
Update README.md 4780f6a0d3
Update README.md 285f9b0e51
Update README.md a15e931e78
Update README.md f02e5c63df
Update README.md 0a5ffcfe30
Update README.md 25a87799ec
Update README.md 931bd68b3e
Update README.md 60f98fa57a
CrYOLO/1.6.1 modules 308fd1c890 
There are _cpu and _gpu flags available, which are selected based on
fancy modulefile code (Thanks Achim)
Merge branch 'cryolo-cpu' into 'master' a3cb734cbb 
CrYOLO/1.6.1 modules

See merge request Pmodules/buildblocks!92
vtk 8.2.0 build, old version deprecated ac7fb7ebc2
Merge branch '71-build-vtk-8-2-0-modules' into 'master' 81b8842329 
Resolve "build VTK 8.2.0 modules"

Closes #71

See merge request Pmodules/buildblocks!93
OpenBLAS 0.3.9 and 0.3.10 build 3d31179ed7
Merge branch '72-openblas-0-3-9-and-0-3-10' into 'master' c742af1866 
Resolve "OpenBLAS 0.3.9 and 0.3.10"

Closes #72

See merge request Pmodules/buildblocks!94
boost/1.73 build, without Python 0eff95b244
Merge branch '73-build-boost-1-73-serial' into 'master' 3cd23b4a34 
Resolve "build boost/1.73 (serial)"

Closes #73

See merge request Pmodules/buildblocks!95
gsl/2.6 build with current GCCs c63771f61a
Merge branch '74-build-gsl-2-6-with-current-gccs' into 'master' 7f708b9687 
Resolve "build gsl/2.6 with current GCCs"

Closes #74

See merge request Pmodules/buildblocks!96
gtest/1.10.0 build 44035be349
Merge branch '75-build-gtest-1-10-0' into 'master' cea7962961 
Resolve "build gtest/1.10.0"

Closes #75

See merge request Pmodules/buildblocks!97
template for 'New variant' reviewed c6d83ce4f6
mpich/3.3.2 build, cleanup variant files 3f56eb1bcc
Merge branch '76-build-mpich-3-3-2' into 'master' 8bdd67ff6c 
Resolve "build mpich/3.3.2"

Closes #76

See merge request Pmodules/buildblocks!98
Update New variant.md a47ccfe69b
Changes in OpenMPI ea8207cfe7
mpich: variants.merlin added 32e818391a
openmpi: fix handling of fallback libraries in modulefile ff54c6df40
openmpi/3.1.6 build 01ed7c9387
Merge branch '77-build-openmpi-3-1-6' into 'master' 40f0504724 
Resolve "build openmpi/3.1.6"

Closes #77

See merge request Pmodules/buildblocks!99
H5hut cleanup build-scripts and variants ec15d8cf55
Merge branch '78-cleanup-h5hut' into 'master' 1d9f56ca55 
Resolve "cleanup H5hut"

Closes #78

See merge request Pmodules/buildblocks!100
H5hut/2.0.0rc6 build with current deÃpendencies 1bb62ff14a
Merge branch '79-h5hut-build-version-2-0-0rc6-for-current-gccs-openmpi-and-hdf5' into 'master' 92e325da8e 
Resolve "H5hut: build version 2.0.0rc6 for current GCCs, openmpi and hdf5"

Closes #79

See merge request Pmodules/buildblocks!101
trilinos/12.18.1: module build, cleanup variants 909a9d48d7
Merge branch '80-trillions-12-18-1-build-modules' into 'master' 26d449f63c 
Resolve "trillions/12.18.1: build modules"

Closes #80

See merge request Pmodules/buildblocks!102
lapack/3.9.0: new build-block added f89bd777c9
Merge branch '81-lapack-3-9-0-new-build-block' into 'master' 817bf6e33a 
Resolve "lapack/3.9.0: new build-block"

Closes #81

See merge request Pmodules/buildblocks!103
amrex/18.07_3d: build with current GCCs and openmpi for rhel6 and merlin6 d1af65426b
Merge branch '82-amex-18-05_3d-build-with-current-gccs-and-openmpi' into 'master' edd0ebf55f 
Resolve "amex/18.07_3d: build with current GCCs and openmpi"

Closes #82

See merge request Pmodules/buildblocks!104
boost/1.~7[03].0: build with current GCCs and openmpi f87d02aef6
Merge branch '83-boost-1-7-03-0-build-modules' into 'master' f1d59fa46f 
Resolve "boost/1.7[03].0: build modules"

Closes #83

See merge request Pmodules/buildblocks!105
elegant/2020.2.0: module build 7e8ed1b740
Add relion 3.1.0 075f98cd20
Merge branch '84-elegant-2020-2-0-build-module-review-build-block' into 'master' 40e30c1a44 
Resolve "elegant/2020.2.0: build module, review build-block"

Closes #84

See merge request Pmodules/buildblocks!106
Merge branch 'relion' into 'master' 4f0c84bdaa 
Add relion 3.1.0

See merge request Pmodules/buildblocks!107
hdf5/1.10.6 module build for rhel6 and merlin6 e06914aa36
Merge branch '85-hdf5-1-10-6-build-with-current-gccs-and-openmpi-for-rhel6-and-merlin6' into 'master' 667e522ef9 
Resolve "hdf5/1.10.6: build with current GCCs and openmpi for rhel6 and merlin6"

Closes #85

See merge request Pmodules/buildblocks!108
parmetis/4.0.3 module build for rhel6 and merlin6 with current GCCs and opemmpi 899dfdfcb0
Merge branch '86-parmetis-4-0-3-build-with-current-gccs-and-openmpi' into 'master' 2ef5032e8b 
Resolve "parmetis/4.0.3: build with current GCCs and openmpi"

Closes #86

See merge request Pmodules/buildblocks!109
Changes in OpenMPI b2dc06e2df
openssl/1.1.1g module build 40a24127d0
Merge branch '87-openssl-1-1-1g-build' into 'master' 8249d1068d 
Resolve "openssl/1.1.1g build"

Closes #87

See merge request Pmodules/buildblocks!110
Python: newer version of include pip 45f7cd3189 
- no need to run get-pip.py
Python: fixes in build script b5e65bc125 
- prepend to PATH and LD_LIBRARY_PATH not append
- set CFLAFS too (same as CPPFLAFS)
Merge branch '88-fixes-in-python-build-script' into 'master' c215a3bb11 
Resolve "fixes in Python build-script"

Closes #88

See merge request Pmodules/buildblocks!111
Python/{3.7.8,3.8.4}: modules build ba6f2334bb
Merge branch '89-python-2-7-18-python-3-8-4-build-modules' into 'master' 4645254fe1 
Resolve "Python/{2.7.18,3.7.8,3.8.4}: build modules"

Closes #89

See merge request Pmodules/buildblocks!113
emacs: fix in build-script 174cda266c 
- pbuild::make_all must not be called
Merge branch '90-emacs-fix-in-build-script' into 'master' 1081df77a1 
Resolve "emacs fix in build-script"

Closes #90

See merge request Pmodules/buildblocks!112
emacs/26.3: build module e749e9f633
Merge branch '93-emacs-26-3' into 'master' 61dcff579b 
Resolve "emacs/26.3"

Closes #93

See merge request Pmodules/buildblocks!114
gnuplot/5.2.8: build module 0eb1f32f3c
Merge branch '92-gnuplot-5-2-8-build' into 'master' ce5122a2b2 
Resolve "gnuplot/5.2.8 build"

Closes #92

See merge request Pmodules/buildblocks!115
Update GROMACS: GPU option as tag a21e9b18ed
Update QE: 6.5 d392f7634a
LAMMPS 2020 b4f2bec8b9
LAMMPS 2020 8095111408
cuda/10.1.105 81b32a2c70
Add some python dev tools to hpce-tools b987afe195
Add scicat_client to the datacatalog module. 0b438a9d2e 
The script is based off the scicat_client-0.1.0 anaconda environment.
Conda does not need to be activated to run, so the pmodule simple
symlinks the entrypoint to the module bin.
Merge branch 'anaconda' into 'master' a454593f55 
Add scicat_client to the datacatalog module

See merge request Pmodules/buildblocks!118
Update LAMMPS: from make to cmake, OpenMPI 4.0.4 support, 2020.3 139305ec03
IOR 3.2.1 cdf5e8dcc4
Merge branch 'master' into 'openmpi_slurm' 5352d620fd 
# Conflicts:
#   Compiler/openmpi/modulefile
Merge branch 'openmpi_slurm' into 'master' 9b505c6bcd 
OpenMPI slurm series

See merge request Pmodules/buildblocks!91
Merge branch 'qe' into 'master' f02affd6c6 
Update QE: 6.5

See merge request Pmodules/buildblocks!116
Merge branch 'cuda-10.1' into 'master' 2a9f473ba8 
cuda/10.1.105

See merge request Pmodules/buildblocks!117
Merge branch 'gromacs' into 'master' d2539cb185 
Added Gromacs 2020.2

See merge request Pmodules/buildblocks!90
Merge branch 'lammps' into 'master' 002f6bbd30 
Lammps

See merge request Pmodules/buildblocks!119
Merge branch 'IOR' into 'master' 50f4935fd8 
IOR 3.2.1

See merge request Pmodules/buildblocks!120
Java build update. Added Java 10 and 15 5f08042155
Java build update. Added Java 10 and 15 4e4d1f1ed9
Merge branch 'Java' into 'master' c12038afb8 
Java

See merge request Pmodules/buildblocks!121
Java module to stable eb77549b98
Merge branch 'Java' into 'master' bff66b40d0 
Java module to stable

See merge request Pmodules/buildblocks!122
OpenMPI v4.0.4 to stable. v3.1.4 to deprecated 6065b43ac1
Merge branch 'openmpiv404prod' into 'master' eff2fe04e2 
OpenMPI v4.0.4 to stable. v3.1.4 to deprecated

See merge request Pmodules/buildblocks!123
added access permission info to anaconda documentation d75a0ca76d
Merge branch '94-commit-docu-about-required-permissions-for-anaconda-modules' into 'master' 3932a85f13 
Resolve "commit docu about required permissions for anaconda modules"

Closes #94

See merge request Pmodules/buildblocks!124
Tool to install jupyter kernel wrapper for a conda env c83c2a5ca7
Merge branch '95-tool-and-recipe-for-installing-jupyter-kernel-wrappers' into 'master' 3004a31b69 
Resolve "Tool and recipe for installing jupyter kernel wrappers"

Closes #95

See merge request Pmodules/buildblocks!125
hep_root conda env implemented for Alexander Skawran 348773f996 
late commit of implementation from Feb 2020
Merge branch '96-add-hep_root-environment' into 'master' b453afe51e 
Resolve "Add hep_root environment"

Closes #96

See merge request Pmodules/buildblocks!126
Update anaconda README.md with information on logging 2ed35423d2
Merge branch 'anaconda-docu-upd-20201019' into 'master' 1ccc73bf65 
Update anaconda README.md with information on logging

See merge request Pmodules/buildblocks!127
Mark relion/3.1.0 as stable 741c68da52
Merge branch 'master' into 'master' 832c480846 
Mark relion/3.1.0 as stable

See merge request Pmodules/buildblocks!128
Add new 'topaz' environment for EM 792a562c57
Reverting bad conda_setup script 1668e1d3fa 
This broke anaconda because the CONDA_PREFIX is not defined.
Better to setup conda directly in the modulefile.
committed initially forgotten kernelwrapper and log scripts 414a46ff76
Merge branch '95-tool-and-recipe-for-installing-jupyter-kernel-wrappers' into 'master' 6026d729c1 
Resolve "Tool and recipe for installing jupyter kernel wrappers"

Closes #95

See merge request Pmodules/buildblocks!131
Merge branch 'conda-setup' into 'master' f695b5b640 
Reverting bad conda_setup script

See merge request Pmodules/buildblocks!130
Merge branch 'topaz' into 'master' 6d5404c2fb 
Add new 'topaz' environment for EM

See merge request Pmodules/buildblocks!129
Making anaconda 2019.07 stable 275f8e4572
Merge branch '97-make-anaconda-2019-07-finally-stable' into 'master' ef0e32a250 
Resolve "Make anaconda 2019/07 finally stable"

Closes #97

See merge request Pmodules/buildblocks!132
rhel6: set release to stable for boost/1.7{0,3}.0 fcb2f5461a
serial hdf5 1.10.6 added with current GCCs 5553fbe1d8
Merge branch '98-hdf5-serial-1-10-6' into 'master' 32ab21eef2 
Resolve "hdf5 serial 1.10.6"

Closes #98

See merge request Pmodules/buildblocks!133
Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks 9547dadc17
release serial boost/1.73.0 as stable 9aec404264
release serial boost/1.73.0 as stable d5e138da4c
Merge branch '99-release-boost-1-73-as-stable' into 'master' 8a3250c405 
Resolve "release boost 1.73 as stable"

Closes #99

See merge request Pmodules/buildblocks!134
gsl: 2.6 with gcc/10.2 36f6c84a52
Merge branch '100-gsl-build-version-2-6-gcc-10-2' into 'master' b40b1f218f 
Resolve "gsl: build version 2.6 GCC 10.2"

Closes #100

See merge request Pmodules/buildblocks!135
mpich: version 3.3.2 with current GCCs 059fb38f6c 
- reviewed configuration
Merge branch '101-mpich-build-version-3-3-2-with-current-gccs' into 'master' 75847fc9af 
Resolve "mpich: build version 3.3.2 with current GCCs"

Closes #101

See merge request Pmodules/buildblocks!136
H5hut/2.0.0rc6 parallel released as stable a3c825f7b9
Merge branch '102-h5hut-release-2-0-0rc6-parallel-as-stable' into 'master' 8085993bbf 
Resolve "H5hut: release 2.0.0rc6 parallel as stable"

Closes #102

See merge request Pmodules/buildblocks!137
trilinos/12.18.1: released as stable b9941e67c2
trilinos/12.18.1: released as stable 218f5413e4
Merge branch '103-trilinos-release-12-18-1-as-stable' into 'master' 648eb3dda5 
Resolve "trilinos: release 12.18.1 as stable"

Closes #103

See merge request Pmodules/buildblocks!138
OPAL/2.4: build with gcc/8.4.0 3d841cf76a 
- AMR and AMR_MG_SOLVER are now enabled
patchelf: build-script reviewed 779290f9f1
Merge branch '105-patchelf-review-build-script' into 'master' 8718e4fbe6 
Resolve "patchelf: review build script"

Closes #105

See merge request Pmodules/buildblocks!140
gcc: build version 10.2.0 93dbfffd64 
- requires the patch 'gcc-10.2.0-cpp-__has_include.patch'
Merge branch '106-gcc-build-version-10-2' into 'master' a3e6fdeea7 
Resolve "gcc: build version 10.2"

Closes #106

See merge request Pmodules/buildblocks!141
parmetis version 4.0.3 released as stable 5e172f71ab
Merge branch '107-parmetis-release-4-0-3-as-stable' into 'master' 9202b47b10 
Resolve "parmetis: release 4.0.3 as stable"

Closes #107

See merge request Pmodules/buildblocks!142
hdf5/1.10.6 released as stable 2c2be61adb
Merge branch '108-hdf5-release-version-1-10-6-parallel-as-stable' into 'master' 661119d3a0 
Resolve "hdf5: release version 1.10.6 parallel as stable"

Closes #108

See merge request Pmodules/buildblocks!143
boost/1.73.0_slurm f16fdd3145 
- new variants with current GCCs and openmpi/4.0.5_slurm
- variants with current GCCs and openmpi/3.1.6_slurm released as stable
Merge branch '109-boost-new-variants-for-version-1-73-0' into 'master' 3f4e2e7051 
Resolve "boost: new variants for version 1.73.0"

Closes #109

See merge request Pmodules/buildblocks!144
amrex/18.07_3d released as stabled af2b9df2ba
Merge branch '110-amrex-18-07_3d-release-as-stable' into 'master' 9255c37af9 
Resolve "amrex/18.07_3d: release as stable"

Closes #110

See merge request Pmodules/buildblocks!145
clang: new build-block added 0f1b3a7d0d
Merge branch '111-clang-write-build-block' into 'master' 5e237b6dce 
Resolve "clang: write build-block"

Closes #111

See merge request Pmodules/buildblocks!146
uncrustify: build-block added 50c812b179
Merge branch '112-uncrustify-new-build-block' into 'master' 6ae4757ac3 
Resolve "uncrustify: new build-block"

Closes #112

See merge request Pmodules/buildblocks!147
MITHRA: new build-block added 18beaf08c7
Merge branch '113-mithra-new-build-block' into 'master' 194ed07ecb 
Resolve "MITHRA: new build block"

Closes #113

See merge request Pmodules/buildblocks!148
MITHRA: download from Arya's repo 2393bdae8e
Merge branch '114-mithra-use-source-from-arya' into 'master' 7e5d91d9f4 
Resolve "MITHRA use source from Arya"

Closes #114

See merge request Pmodules/buildblocks!149
Add relion 3.1.0-1 variant e173ae9dd1
Add MotionCor2 1.3.1, 1.3.2, & 1.4.0 8014c16e2a
Add Gautomatch buildblock b28e9a8a39 
No new versions were installed, but this documents the build process and
updates the modulefile.
Add Gctf buildblock 5bdf6b2952 
No new versions were installed, but this documents the build process and
updates the modulefile.
Release relion 3.1.1 3d0560a0f3
Merge branch 'em' into 'master' 7974687dae 
New EM versions

See merge request Pmodules/buildblocks!150
openmpi/4.0.5_slurm 16a4bc7d23
Merge branch 'openmpi405_slurm_cuda' into 'master' 810228eb7a 
openmpi/4.0.5_slurm

See merge request Pmodules/buildblocks!151
Added Paraview automatic installation 21210530b4
Merge branch 'paraview' into 'master' c79b48014e 
Added Paraview automatic installation

See merge request Pmodules/buildblocks!152
Removed Paraview 5.8.0 (was not installed) be3d4688c5
Merge branch 'paraview' into 'master' 92aa5ee3e8 
Removed Paraview 5.8.0 (was not installed)

See merge request Pmodules/buildblocks!153
gnuplot build script reviewed ca0ffad150
gnuplot/5.4.0 added 75ebaeedcf
Merge branch '115-build-gnuplot-5-4-0module-for-linux' into 'master' 7b80d1b5c5 
Resolve "build gnuplot/5.4.0module for Linux"

Closes #115

See merge request Pmodules/buildblocks!154
Add cisTEM modulefile 451d3db6f4 
No new versions are available
Adding preallocated scripts 51436c8166
Update build 26fcf329a5
Merge branch 'patch-1' into 'master' 0660ba35f4 
Update build

See merge request Pmodules/buildblocks!156
Initial dynamo/1.1.514 buildblock 21c3278e96
Merge branch 'cistem' into 'master' b841630e95 
Add cisTEM modulefile

See merge request Pmodules/buildblocks!155
Merge branch 'dynamo' into 'master' bc1043cc1c 
Initial dynamo/1.1.514 buildblock

See merge request Pmodules/buildblocks!157
Fix dynamo license in modulefile 94901de619
Merge branch 'dynamo' into 'master' 6754daae16 
Fix dynamo license in modulefile

See merge request Pmodules/buildblocks!158
intel/20.4 to stable 6705712b24
OpenMPI 4.0.5 4.0.4 3.1.6 to stable 4b67a544aa
Merge branch 'openmpi4.0.5_prod' into 'master' b912d39d9e 
Openmpi4.0.5 prod

See merge request Pmodules/buildblocks!159
Setting cuda versions to stable c9978118c5 
These are pretty well tested via relion. There was a slight question
about 11.0.3 with kokkos, but it seems to be specific to that package.
Major Relion recompilation using newer openmpi 782e89c578 
- Add relion/2.1 with openmpi/4.0.4_slurm
- Add relion/3.0.8-1 with openmpi/4.0.5_slurm
- Mark 3.1.0-1 and 3.1.1 as stable
- Deprecate all older versions (betas and versions with openmpi/3.1.4
  and older, which don't work with the current configuration)
Merge branch 'relion-openmpi-update' into 'master' 4b2d3a5d7e 
Relion: new versions and deprecations

See merge request Pmodules/buildblocks!160
OpenBLAS: old build script renamed 06a5fa983a
OpanBLAS: version 0.3.13 added 5204a351f4
OpenBLAS: build reviewed for version 0.3.13 975a836248
Merge branch '117-openblas-0-3-13' into 'master' 370f2dcf71 
Resolve "OpenBLAS 0.3.13"

Closes #117

See merge request Pmodules/buildblocks!161
git: version 2.30.0 build for rhel6 0891aa03f0
Merge branch '118-git-2-30-0-for-rhel6' into 'master' 283e9e1b21 
Resolve "git 2.30.0 for rhel6"

Closes #118

See merge request Pmodules/buildblocks!162
cmake: version 3.19.2 build for rhel6 b4f4e417b6
Merge branch '119-cmake-build-version-3-19-2' into 'master' c332d46212 
Resolve "cmake: build version 3.19.2"

Closes #119

See merge request Pmodules/buildblocks!163
openmpi: build-script reviewed adb140bdc6 
- build without sge suppotz
- use UCX module
openmpi: version 4.0.5 added for rhel6 c91ce5031d
Merge branch '120-openmpi-version-4-0-5' into 'master' e27de35dff 
Resolve "openmpi: version 4.0.5"

Closes #120

See merge request Pmodules/buildblocks!164
hdf5: 1.10.7 added for rhel6 31df354236
Merge branch '121-hdf5-version-1-10-7-for-rhel6' into 'master' 64468da2da 
Resolve "hdf5 version 1.10.7 for rhel6"

Closes #121

See merge request Pmodules/buildblocks!165
hdf5: 1.12.0 for rhel6 eefd0e80aa
Merge branch '122-hdf5-1-12-0-for-rhel7' into 'master' 55ce86894e 
Resolve "hdf5: 1.12.0 for rhel7"

Closes #122

See merge request Pmodules/buildblocks!166
ucx: new module added c15ccb6ae9
Merge branch '124-ucx-build-new-module' into 'master' f6d2468f81 
Resolve "ucx build new module"

Closes #124

See merge request Pmodules/buildblocks!168
trilinos: build-block re-added to MPI group and deprecated all variants ee8cdac2fb
trilinos: deprecate module with retired and ancient openmpi versions d9547e10d0
trilinos: variants for version 11 removed bf791285d1
Merge branch '123-trilinos-deprecate-all-modules-build-with-openmpi-1-and-2' into 'master' 94a586e9ae 
Resolve "trilinos: deprecate all modules build with openmpi/1 and 2"

Closes #123

See merge request Pmodules/buildblocks!167
Added CUDA_PATH to CUDA module 7e98ea1bd8
Added 11.1.1 to stable 8a6e7d90c4
Added CUDA versions to stable 53ce97535b
Added CUDA versions to stable 5a18cbc5b5
Revert "Added CUDA versions to stable" 10361b172b 
This reverts commit 5a18cbc5b5.
Merge branch 'cuda_CUDA_PATH' into 'master' 7bf80bcd27 
Added CUDA_PATH, updating PModule repositories.

See merge request Pmodules/buildblocks!170
WIP: UCX 1.9.0 affc8d6ed2
parmetis: deprecate variants 55b88f4a45 
- all variants build with openmpi 1 and 2
- all openmpi variants with version 3.1.5 and older
Merge branch '125-parmetis-deprecate-all-modules-build-with-openmpi-1-or-2' into 'master' 8e6ab771db 
Resolve "parmetis: deprecate all modules build with openmpi 1 or 2"

Closes #125

See merge request Pmodules/buildblocks!169
parallel-netcdf: deprecate all variants build with openmpi <= 3.1.5 5085d90420
parallel-netcdf: build script reviewed 4c475bfdac
parallel-netcdf: variants file renamed 041c55da83
Merge branch '126-parallel-netcdf-deprecate-variants-build-with-openmpi-prior-to-3-1-6' into 'master' bebcc2645d 
Resolve "parallel-netcdf: deprecate variants build with openmpi prior to 3.1.6"

Closes #126

See merge request Pmodules/buildblocks!172
WIP: UCX 1.9.0 b7f51bf1e9
WIP: UCX 1.9.0 db7f7afccd
Merge branch 'ucx_v1.9.0' into 'master' 91b89d3d9b 
UCX 1.9.0

See merge request Pmodules/buildblocks!171
hdf5: variants build for version 1.10.7 and 1.12.0 00cc934266
Merge branch '127-hdf5_serial-build-modules-for-version-1-10-7-and-1-12-0' into 'master' 0e6b9ab5dd 
Resolve "hdf5_serial: build modules for version 1.10.7 and 1.12.0"

Closes #127

See merge request Pmodules/buildblocks!173
netcdf: deprecate all variants build with ancient/retired openmpi versions bc41377ae5
Merge branch '128-netcdf-deprecate-all-variants-build-with-retired-openmpi-versions' into 'master' e240db1bd7 
Resolve "netcdf: deprecate all variants build with retired openmpi versions"

Closes #128

See merge request Pmodules/buildblocks!174
ippl: all ancient versions removed 175e00db43
Merge branch '129-ippl-remove-all-1-1-4-variants' into 'master' 9a36b01dd8 
Resolve "ippl: remove all 1.1.4 variants"

Closes #129

See merge request Pmodules/buildblocks!175
hdf5: deprecate all variants build with openmpi <= 3.1.5 20f24c46c7
Merge branch '130-hdf5-deprecate-all-variants-build-with-openmpi-3-1-5' into 'master' 2256456340 
Resolve "hdf5: deprecate all variants build with openmpi <= 3.1.5"

Closes #130

See merge request Pmodules/buildblocks!176
elegant: deprecate old versions 398d66bc00
Merge branch '131-elegant-deprecate-old-versions' into 'master' fc471de513 
Resolve "elegant: deprecate old versions"

Closes #131

See merge request Pmodules/buildblocks!177
boost: deprecate all variants build with openmpi <= 3.1.5 374e09b1e5
Merge branch '132-boost-deprecate-variants-build-with-openmpi-3-1-5' into 'master' b088dbde11 
Resolve "boost: deprecate variants build with openmpi <= 3.1.5"

Closes #132

See merge request Pmodules/buildblocks!178
BoxLib: deprecate all variants build with openmpi <= 3.1.5 99ec63c031
Merge branch '133-boxlib-deprecate-all-variants-build-with-openmpi-3-1-5' into 'master' 6c850ebaaa 
Resolve "Boxlib: deprecate all variants build with openmpi <= 3.1.5"

Closes #133

See merge request Pmodules/buildblocks!179
amrex: deprecate all variants build with openmpi <= 3.1.5 e7b91ad6ce
Merge branch '134-amrex-deprecate-all-variants-build-with-openmpi-3-1-5' into 'master' 47b4fa5e1c 
Resolve "amrex: deprecate all variants build with openmpi <= 3.1.5"

Closes #134

See merge request Pmodules/buildblocks!180
H5hut: deprecate all variants build with openmpi <= 3.1.5 554e34e9f1
Merge branch '135-h5hut-deprecate-all-variants-build-with-openmpi-3-1-5' into 'master' ab69464a6d 
Resolve "H5hut: deprecate all variants build with openmpi <= 3.1.5"

Closes #135

See merge request Pmodules/buildblocks!181
OPAL: deprecate or remove old versions d09dc0eacb
Merge branch '136-opal-deprecate-all-version-2-0-0' into 'master' f8e5d21430 
Resolve "OPAL: deprecate all version < 2.0.0"

Closes #136

See merge request Pmodules/buildblocks!182
SuperLU_DIST: deprecate all variants build with openmpi <= 3.1.5 9cbdfe048a
Merge branch '137-superlu_dist-deprecate-all-variants-build-with-openmpi-3-1-5' into 'master' 06b41688a0 
Resolve "SUperLU_DIST: deprecate all variants build with openmpi <= 3.1.5"

Closes #137

See merge request Pmodules/buildblocks!183
SuperLU_DIST: deprecate variants build with deprecated Intel compiler 93dd5eaca5
Merge branch '138-superlu_dist-deprecate-variants-build-with-old-intel-compiler' into 'master' aaffa7c8a9 
Resolve "SuperLU_DIST: deprecate variants build with old Intel compiler"

Closes #138

See merge request Pmodules/buildblocks!184
dks: deprecate all variants 8981e64c9c
Merge branch '139-dks-deprecate-all-variants-build-with-openmpi-3-1-5' into 'master' 40650cf6f1 
Resolve "dks: deprecate all variants build with openmpi <= 3.1.5"

Closes #139

See merge request Pmodules/buildblocks!185
Relion 3.1.2 and 3.1.1-1 221f141241 
3.1.1-1 is compiled against cuda-aware openmpi/4.0.5_slurm (CUDA
11.0.3), which fixes some bugs
Added openmpi/4.0.5_slurm with cuda/11.0.3 7282410e71
Merge branch 'openmpi_cuda10' into 'master' 956e579253 
Added openmpi/4.0.5_slurm with cuda/11.0.3

See merge request Pmodules/buildblocks!187
SuperLU_DIST: remove all variants build with old openmpi versions b6f18c196f
Merge branch '140-superlu_dist-remove-variants-with-ancient-openmpi-versions' into 'master' d1a74a9cd8 
Resolve "SuperLU_DIST: remove variants with ancient openmpi versions"

Closes #140

See merge request Pmodules/buildblocks!186
Merge branch 'master' into 'master' 0fd700de48 
Relion 3.1.2 and 3.1.1-1

See merge request Pmodules/buildblocks!188
Added cuda/11.2.2 -> unstable db375c2eec
Added cuda/11.2.2 -> unstable d619820871
Added cuda/11.2.2 -> unstable ec2d85085f
Merge branch 'CUDA_README' into 'master' 050398b556 
Cuda README + CUDA 11.2.2

See merge request Pmodules/buildblocks!189
DGX added 594b9deef5
KNEM generic d27c6f30ce
KNEM generic 8106ceafb0
UCX_WARN_UNUSED_ENV_VARS=n e856c5c3c4
NVIDIA GDRCopy 8cc49a0614
NVIDIA GDRCopy 9d9d2d4939
Merge branch 'knem' into 'master' 3b060334d1 
KNEM generic

See merge request Pmodules/buildblocks!190
Merge branch 'ucx_v1.9.0' into 'master' 25256ee255 
Ucx v1.9.0

See merge request Pmodules/buildblocks!191
Merge branch 'gdrcopy' into 'master' 851dfeea81 
NVIDIA GDRCopy

See merge request Pmodules/buildblocks!192
Added GDRCOPY 1c745b25fb
Added GDRCOPY with cuda 11.2.2 fc9bd5fcaa
Merge branch 'GDRCopy' into 'master' bc49b8c7c1 
Added GDRCOPY with cuda 11.2.2

See merge request Pmodules/buildblocks!193
Merge branch 'ucx_v1.9.0' into 'master' 685327d729 
Added GDRCOPY

See merge request Pmodules/buildblocks!194
Added OpenMPI DGX bb3f8de862
Add conda mxarchive environment 679b02118d
Merge branch 'mxarchive' into 'master' 4daaea8a31 
Add conda mxarchive environment

See merge request Pmodules/buildblocks!196
Added OpenMPI 4.1.0, fixed missing PMI for dgx/merlin6 flags 881dcb0e38
Merge branch 'openmpi_dev' into 'master' 32e2ae123f 
Added OpenMPI DGX

See merge request Pmodules/buildblocks!195
UCX 6aac661dcd
OpenMPI and UCX f4d8b7f1af
Merge branch 'openmpi_dev' into 'master' cf01ed1895 
UCX

See merge request Pmodules/buildblocks!197
ADded 2020.4 489728eddb
Merge branch 'gromacs_openmpi405' into 'master' 123571b3c5 
Added 2020.4

See merge request Pmodules/buildblocks!198
UCX + OpenMPI d52f01c42f
Merge branch 'openmpi_dev' into 'master' 766684f5d4 
UCX + OpenMPI

See merge request Pmodules/buildblocks!199
Paraview 5.9.0 2adf7f71e4
Merge branch 'paraview' into 'master' 18d2e9bec6 
Paraview 5.9.0

See merge request Pmodules/buildblocks!200
unstable->stable:cuda/11.2.2|new->unstable:cuda/11.3.0 167f68fe37
Merge branch 'cuda' into 'master' 5dc02ad00a 
unstable->stable:cuda/11.2.2|new->unstable:cuda/11.3.0

See merge request Pmodules/buildblocks!201
Add UCX 1.10.0_slurm 6f245748fc
Merge branch 'ucx' into 'master' 3dbe276755 
Add UCX 1.10.0_slurm

See merge request Pmodules/buildblocks!202
gmp: version 6.2.1 added 9b63d20897
Merge branch '141-build-gmp-6-2-1' into 'master' 7f678b8582 
Resolve "build gmp/6.2.1"

Closes #141

See merge request Pmodules/buildblocks!203
mpfr: compile version 4.0.2 with PIC 78a6c69781
Merge branch '142-mpfr-compile-with-pic' into 'master' bac13b35eb 
Resolve "mpfr: compile with PIC"

Closes #142

See merge request Pmodules/buildblocks!204
mpc: use Libraries removed d490baa310
Merge branch '143-mpc-use-libraries-can-be-removed' into 'master' 9589e6b6cb 
Resolve "mpc: use Libraries can be removed"

Closes #143

See merge request Pmodules/buildblocks!205
mpc: new module for version 1.2.1 60a9b64cc2
Merge branch '144-mpc-new-version-1-2-1' into 'master' 20e187835e 
Resolve "mpc: new version 1.2.1"

Closes #144

See merge request Pmodules/buildblocks!206
gcc: release gcc/10.2.0 as stable 5ad04ff9fd
Merge branch '145-gcc-release-10-2-0-as-stable' into 'master' 96d3cb5055 
Resolve "gcc: release 10.2.0 as stable"

Closes #145

See merge request Pmodules/buildblocks!207
gcc: build module for version 10.3.0 272c81ae65
Merge branch '146-gcc-build-module-for-version-10-3-0' into 'master' d368da414d 
Resolve "gcc: build module for version 10.3.0"

Closes #146

See merge request Pmodules/buildblocks!208
clhep: release 2.4.1.0 as stable, new modules for version 2.4.4.1 064fc44289
Merge branch '147-clhep' into 'master' 0ad3ecfb6f 
Resolve "clhep"

Closes #147

See merge request Pmodules/buildblocks!209
clhep: URL in build-script fixed 0df08be3a1
Merge branch '148-clhep-fix-url-in-build-script' into 'master' cd1304c278 
Resolve "clhep: fix url in build-script"

Closes #148

See merge request Pmodules/buildblocks!210
gtest: released as stable, new variant with gcc/10.3.0 56e80ebe40
Merge branch '149-gtest-release-as-stable-and-build-with-gcc-10-3-0' into 'master' 426bdf5e3a 
Resolve "gtest: release as stable and build with gcc/10.3.0"

Closes #149

See merge request Pmodules/buildblocks!211
boost: cleanup build-script c805d47825
Merge branch '150-boost-cleanup-build-script' into 'master' d8d167ff06 
Resolve "boost: cleanup  build-script"

Closes #150

See merge request Pmodules/buildblocks!212
boost: variants for current GGC's and CUDA aware openmpi 4f61fd3816
Merge branch '151-boost-new-variants-for-current-gcc-s' into 'master' ec440aa91a 
Resolve "boost: new variants for current GCC's"

Closes #151

See merge request Pmodules/buildblocks!213
boost: build 1.73.0 for dgx 7c030878f9
Merge branch '152-boost-build-1-73-0-for-dgx' into 'master' 54dfb18d90 
Resolve "boost: build 1.73.0 for dgx"

Closes #152

See merge request Pmodules/buildblocks!214
fftw: new version 3.3.9 for merlin6 c23eda5a9b
Merge branch '153-fftw-new-version-3-3-9' into 'master' 021dee5221 
Resolve "fftw: new version 3.3.9"

Closes #153

See merge request Pmodules/buildblocks!215
emacs: new version 27.2 07c760b9fe
Merge branch '154-emacs-new-version-27-2' into 'master' aeb11bf09b 
Resolve "emacs: new version 27.2"

Closes #154

See merge request Pmodules/buildblocks!216
gnuplot: new version 5.4.1 2b1dfec10b
Merge branch '155-gnuplot-new-version-5-4-1' into 'master' 625fe9387d 
Resolve "gnuplot: new version 5.4.1"

Closes #155

See merge request Pmodules/buildblocks!217
kokkos: new build-block added 5b0e7a967f
Merge branch '156-kokkos-new-build-block' into 'master' 810b7d04a0 
Resolve "kokkos: new build block"

Closes #156

See merge request Pmodules/buildblocks!218
bash: new build-block added a7c7bc4c7b
Merge branch '157-bash-new-build-block' into 'master' 29274ac187 
Resolve "bash: new build-block"

Closes #157

See merge request Pmodules/buildblocks!219
added ray_py38 environment for Adelmann e736e4aedc
Merge branch '158-python-env-with-ray-and-ml-software-for-adelmann' into 'master' 1ef3b34924 
Resolve "python env with Ray and ML software for Adelmann"

Closes #158

See merge request Pmodules/buildblocks!220
Added Qt5 196086d3e2
Merge branch 'qt5' into 'master' c4b044118b 
Added Qt5

See merge request Pmodules/buildblocks!221
Added ANSYS 2020R2 c631fb211d
Added ANSYS 2020R2 753a203ed0
Merge branch 'ANSYS2020R2' into 'master' 11407e5c94 
Ansys2020 r2

See merge request Pmodules/buildblocks!223
Fix dependency problem iun relion/3.0.8-1 1f1a754c5d
Merge branch 'relion' into 'master' d981a44f84 
Fix dependency problem in relion/3.0.8-1

See merge request Pmodules/buildblocks!224
New Module: aria2 edd205e966
Marking aria2 stable f18237659a
Merge branch 'aria2' into 'master' c39ec2cba1 
New Module: aria2

See merge request Pmodules/buildblocks!225
Added openmpi/4.0.5-2_slurm and UCX 1.11 4a69e4f6ff
Merge branch 'openmpi' into 'master' 6bb6f46f86 
Added openmpi/4.0.5-2_slurm and UCX 1.11

See merge request Pmodules/buildblocks!226
Add relion/3.1.3 bc2425090a
Add relion/4.0-beta bad1541b54
Merge branch 'relion4' into 'master' a1ddb7afd4 
Add relion 3.1.3 and 4.0-beta

See merge request Pmodules/buildblocks!227
alphafold/2.0.0-b88f8da release cc0cd5388d
Add submission scripts de21d05b14
Release Alphafold 2.0.1 5233ffd6e6 
- Improves the build system to install the submission scripts in bin
- Add README
Merge branch 'alphafold' into 'master' 2dc5098d35 
Alphafold buildblock

See merge request Pmodules/buildblocks!228
OpenMPI and related software lifecycling bce8c9a3f6
Merge branch 'openmpi_cleanup' into 'master' bf0c496907 
OpenMPI and related software lifecycling

See merge request Pmodules/buildblocks!229
openmpi/4.0.4_slurm to deprecated 4d84ee6c07
Merge branch 'openmpi_cleanup' into 'master' 71fc851da8 
openmpi/4.0.4_slurm to deprecated

See merge request Pmodules/buildblocks!232
binutils: new version 2.37 build fab3b73fcf
Merge branch '161-binutils-2-37' into 'master' ad6fa03543 
Resolve "binutils 2.37"

Closes #161

See merge request Pmodules/buildblocks!231
OpenBLAS: version 0.3.15 added 3a5adaa00a
Merge branch '162-openblas-0-3-15' into 'master' 34e400bc44 
Resolve "OpenBLAS 0.3.15"

Closes #162

See merge request Pmodules/buildblocks!233
boost(without MPI): support for Clang added to build-script d658d83223
boost(without MPI): variants for 1.76.0 with clang/12.0.0_rhel7 added f032af718d
gromacs: major version 4 and 5 deprecated 60869d0956
Merge branch '165-gromacs-deprecate-major-versions-4-and-5' into 'master' 757fe23d11 
Resolve "gromacs: deprecate major versions 4 and 5"

Closes #165

See merge request Pmodules/buildblocks!236
cpmd: version 3.17.1 deprecated 46cda16f21
Merge branch '166-cpmd-deprecate-version-3-17-1' into 'master' 57b46c47e1 
Resolve "cpmd: deprecate version 3.17.1"

Closes #166

See merge request Pmodules/buildblocks!237
gromacs: deprecate versions with openmpi prior to 1.10.4 d43a5408f3
gromacs: deprecate versions with openmpi prior to 3.1.6 b79e99ddc2
gromacs: deprecate versions with openmpi prior to 3.1.6 7ff7fdcd32
Merge branch '167-gromacs-deprecate-versions-build-with-openmpi-prior-to-3-1-6' into 'master' f4bddb33f1 
Resolve "gromacs: deprecate versions build with openmpi prior to 3.1.6"

Closes #167

See merge request Pmodules/buildblocks!238
openmpi: deprecate version 1.10.4 f3a0211f1c
ioapi: deprecate parallel 3.2 modules 5aceb216ae
ioapi: serial version deprecated 624398ff3d
ioapi: fixes to build-scripts 49809e0d62
Merge branch '168-ioapi-deprecate-all-modules-with-version-3-2' into 'master' 2ad4693d18 
Resolve "ioapi: deprecate all modules with version 3.2"

Closes #168

See merge request Pmodules/buildblocks!239
openmpi: modules up to version 3.0.1 deprecated 1857fc5ca9
fftw: all modules build with openmpi 3 deprecated eab332e84c
Merge branch '169-fftw-deprecate-all-modules-build-with-openmpi-3' into 'master' 84720d89f0 
Resolve "fftw: deprecate all modules build with openmpi 3"

Closes #169

See merge request Pmodules/buildblocks!240
lammps: all module build with openmpi 3 and older deprecated 4ce23fd03b
Merge branch '170-lammps-deprecate-all-modules-build-with-openmpi-3-and-older' into 'master' edc9727a77 
Resolve "lammps: deprecate all modules build with openmpi 3 and older"

Closes #170

See merge request Pmodules/buildblocks!241
qe: deprecated all modules build with openmpi 3 and older 4c835ba5f2
qe: line-breaks added to whatis and help 53644d2d04
qe: variants file moved b3c3a318af
Merge branch '171-qe-deprecate-modules-build-with-openmpi-3' into 'master' 102f57cf11 
Resolve "qe: deprecate modules build with openmpi 3"

Closes #171

See merge request Pmodules/buildblocks!242
openmpi: deprecated version 3.1.1. 3.1.2 dad19e135f
hdf5: deprecate modules build with openmpi 3.1.5 and older ea03f810c0
Merge branch '172-hdf5-deprecate-modules-build-with-openmpi-3-and-older' into 'master' f9c3592034 
Resolve "hdf5: deprecate modules build with openmpi 3 and older"

Closes #172

See merge request Pmodules/buildblocks!243
openmpi: modules with version 3.1.3 deprecated 57ddd06e85
openmpi: version 3.1.4 deprecated 772150d8a6
Merge branch '164-openmpi-deprecate-old-versions' into 'master' 72403f1b60 
Resolve "openmpi: deprecate old versions"

Closes #164

See merge request Pmodules/buildblocks!235
boost(without MPI): build 1.76.0 for current gcc 9b591a8b1c
boost(without MPI): set release stage of 1.76.0 for clang/12.0.0_rhel7 to stable de1933c339
clang: version 12.0.0 added for rhel7 d93c098b0f
clang: release stage of 10.0.1 changed to stable be09a57134
clang: fixes in build script 6cc9be0b56
Python: virtenv added a6e4ddea0b
Python: release stages changed to stable 7e03abd46f
openssl: release stages changed to stable 41b25b30bd
Merge branch '176-openssl-build-1-1-1l-and-review-release-stages' into 'master' ac57194aae 
Resolve "openssl: build 1.1.1l and review release stages"

Closes #176

See merge request Pmodules/buildblocks!247
Merge branch '175-python-add-virtualenv-and-review-release-stages' into 'master' 167bed156b 
Resolve "Python: add virtualenv and review release stages"

Closes #175

See merge request Pmodules/buildblocks!246
Merge branch '174-clang-change-release-state-of-12-0-0_rhel7-to-stable' into 'master' 9ff66bdee7 
Resolve "clang: change release state of 12.0.0_rhel7 to stable"

Closes #174

See merge request Pmodules/buildblocks!245
boost(without MPI): cleanup release stages 5f7b9ef1ca
Merge branch '163-boost-without-mpi-1-76-0-for-clang-and-other-compilers' into 'master' 0c08917fbb 
Resolve "boost(without MPI): 1.76.0 for clang and other compilers"

Closes #163

See merge request Pmodules/buildblocks!234
gnuplot: release stages reviewed 9d2acd8a29
Merge branch '177-gnuplot-review-release-stages' into 'master' 05492eb668 
Resolve "gnuplot: review release stages"

Closes #177

See merge request Pmodules/buildblocks!248
m4: module for version 1.4.19 build f27ca5d231
Merge branch '178-m4-build-new-module-for-version-1-4-19' into 'master' 1bfb8950d6 
Resolve "m4: build new module for version 1.4.19"

Closes #178

See merge request Pmodules/buildblocks!249
libevent: change release stage of 2.1.12 to stable f29064fcf2
Merge branch '179-libevent-review-release-stages' into 'master' 4e34c27584 
Resolve "libevent: review release stages"

Closes #179

See merge request Pmodules/buildblocks!250
tmux: build-script reviewed 6b800fe4f7
tmux: new module for version 3.2 e05f51cb61
Merge branch '180-tmux-review-build-scripts-and-new-module-for-version-3-2' into 'master' 430171c539 
Resolve "tmux: review build scripts and new module for version 3.2"

Closes #180

See merge request Pmodules/buildblocks!251
patchelf: modules for versions 0.11 and 0.12 added c9c3044f50
Merge branch '181-patchelf-new-version' into 'master' 5a4dd4e8c7 
Resolve "patchelf: new version"

Closes #181

See merge request Pmodules/buildblocks!252
cmake: module for version 3.20.5 build eb42de0c71
Merge branch '182-cmake-build-module-for-version-3-20-5' into 'master' 6285e5dcbb 
Resolve "cmake: build module for version 3.20.5"

Closes #182

See merge request Pmodules/buildblocks!253
git: new module for version 2.33.1 build 78e8ca8ad1
Merge branch '183-git-new-module-for-version-2-33-1' into 'master' 6b837b50d4 
Resolve "git: new module for version 2.33.1"

Closes #183

See merge request Pmodules/buildblocks!254
doxgen: build-script reviewed d952b78d0b
doxgen: module for version 1.9.2 build 3c22f61b58
Merge branch '184-doxygen-build-module-for-version-1-9-2' into 'master' ef43e2be2e 
Resolve "doxygen: build module for version 1.9.2"

Closes #184

See merge request Pmodules/buildblocks!255
gsl: review release stages 3d5e220833
Merge branch '185-gsl-new-variants-review-release-stages' into 'master' a95ba2f4e8 
Resolve "gsl: new variants, review release stages"

Closes #185

See merge request Pmodules/buildblocks!256
openmpi: configure with ucx only if available ea5f961603
openmpi: variants and release stages revied ebcfd4a9b3
ucx: release stage of 1.8.1 changed to stable 69753e061e
ucx: release stage of 1.9.0 changed to deprecated fff3c1ad45
Merge branch '187-uxc-review-release-stage-for-variants-not-build-with-slurm-support' into 'master' 9a47201592 
Resolve "uxc: review release stage for variants not build with slurm support"

Closes #187

See merge request Pmodules/buildblocks!258
Merge branch 'master' into 186-openmpi-review-build-script-and-release-stages 4402e6d094
openmpi: set release stage of 4.0.{2,5} to stable 00be6ad1ed
openmpi: set release stage of 4.0.5-1_slurm with gcc/10.3.0 to stable 76e8253e74
Merge branch '186-openmpi-review-build-script-and-release-stages' into 'master' b98b189522 
Resolve "openmpi: review build script and release stages"

Closes #186

See merge request Pmodules/buildblocks!257
root: build-script reviewed 41adfc08cd
root: release stages reviewed 5f8ce25241
root: Oracle patch moved 3a54d99d2b
Merge branch '188-root-build-module-with-new-version-6-24-06-and-review-release-stage' into 'master' e9ac5dc569 
Resolve "root: build module with new version 6.24.06 and review release stage"

Closes #188

See merge request Pmodules/buildblocks!259
parmetis: variants with gcc/10.3.0 and openmpi/4.0.5 added 6e3d990502
Merge branch '189-parmetis-new-variants' into 'master' 78d17ddbef 
Resolve "parmetis: new variants"

Closes #189

See merge request Pmodules/buildblocks!260
amrex: changes to build with openmpi/4.0.5 implemented 1ef1c8492f 
- compile without Fortran
- apply patch for datatype handling
amrex: build module with gcc/10.3.0 and openmpi/4.0.5-1_slurm 51cf1bea17
amrex: build modules with openmpi/4.0.5 1f05b56c94
Merge branch '190-amrex-review' into 'master' 7d42c72c34 
Resolve "amrex: review"

Closes #190

See merge request Pmodules/buildblocks!261
hdf5: 1.10.7_slurm build with gcc/10.3.0 and openmpi/4.0.5-1_slurm 92e5a7effa
hdf5: rhel6 variants reviewed dc1f5b6e51
Merge branch '191-hdf5-build-modules-for-1-10-7-with-gcc-10-3-0-and-openmpi-4-0-5' into 'master' d585a3c804 
Resolve "hdf5: build modules for 1.10.7 with gcc/10.3.0 and openmpi/4.0.5"

Closes #191

See merge request Pmodules/buildblocks!262
H5hut: build variants for 2.0.0rc6 with gcc/10.3.0 and openmpi/4.0.5 ae104327d4
Merge branch '192-h5hut-new-modules-for-2-0-0rc6-with-gcc-10-3-0-and-openmpi-4-0-5' into 'master' c94dd1c581 
Resolve "H5hut: new modules for 2.0.0rc6 with gcc/10.3.0 and openmpi/4.0.5"

Closes #192

See merge request Pmodules/buildblocks!263
H5hut(serial): variants reviewed c8afca2cf0
H5hut(serial): build-script reviewed 88758dfaf9
Merge branch '193-h5hut-serial-review-release-stages' into 'master' 061e135195 
Resolve "H5hut(serial): review release stages"

Closes #193

See merge request Pmodules/buildblocks!264
trilinos: MueLu enabled a7563fe4d9
Merge branch '194-trilinos-enable-muelu' into 'master' c2599e3ed7 
Resolve "trilinos: enable MueLu"

Closes #194

See merge request Pmodules/buildblocks!265
trilinos: build new module for 13.0.1 903092ba03
OpenBLAS: variants reviewed 1a96a7be8c
Merge branch '196-openblas-review-variants' into 'master' d0fe27fdeb 
Resolve "OpenBLAS: review variants"

Closes #196

See merge request Pmodules/buildblocks!267
Merge branch '195-trilinos-build-modules-for-13-0-1' into 'master' 6ddcfd3bd3 
Resolve "trilinos: build modules for 13.0.1"

Closes #195

See merge request Pmodules/buildblocks!266
MITHRA: release stages reviewed 3ab8e40b82
Merge branch '197-mithra-review-variants' into 'master' cb6f859190 
Resolve "MITHRA: review variants"

Closes #197

See merge request Pmodules/buildblocks!268
OPAL: review build-script 77a2948c9c
Merge branch '199-opal-review-build-script' into 'master' a1019e9c71 
Resolve "OPAL: review build-script"

Closes #199

See merge request Pmodules/buildblocks!270
OPAL: new module for version 2021.1.0 09aef63abc
boost(parallel): new modules for version 1.76.0, rel.stages reviewed 87644d9347
Merge branch '200-boost-parallel-review-versions-and-release-stages' into 'master' de904e0d6c 
Resolve "boost(parallel): review versions and release stages"

Closes #200

See merge request Pmodules/buildblocks!271
Merge branch '198-opal-review-release-stages' into 'master' 142e236e41 
Resolve "OPAL: review release stages"

Closes #198

See merge request Pmodules/buildblocks!269
nasm: new module for version 2.15.05 e8363c93ee
Merge branch '201-nasm-build-module-for-version-2-15-05' into 'master' f75b544003 
Resolve "nasm: build module for version 2.15.05"

Closes #201

See merge request Pmodules/buildblocks!272
nasm: rel.stage of 2.15.05 changed to stable b7e70d3c7d
Merge branch '203-nasm-2-15-05-change-release-stage-to-stable' into 'master' a957e2085b 
Resolve "nasm: 2.15.05 change release stage to stable"

Closes #203

See merge request Pmodules/buildblocks!274
x264: new module for version 2021.06 2bc38e1158
Merge branch '202-x264-new-module-for-version-2021-06' into 'master' a87f5dccad 
Resolve "x264: new module for version 2021.06"

Closes #202

See merge request Pmodules/buildblocks!273
ffmpeg: new module for version 4.4 7138f04459
Merge branch '204-ffmpeg-build-module-for-version-4-4' into 'master' f84e3db045 
Resolve "ffmpeg: build module for version 4.4"

Closes #204

See merge request Pmodules/buildblocks!275
amrex: missing patch file added 34b974717f
Merge branch '205-amrex-add-missing-patch-file' into 'master' c40797c514 
Resolve "amrex: add missing patch file"

Closes #205

See merge request Pmodules/buildblocks!276
bison: new module for version 3.8.2 797ff7af76
Merge branch '206-bison-new-module-for-version-3-8-2' into 'master' c72928b56f 
Resolve "bison: new module for version 3.8.2"

Closes #206

See merge request Pmodules/buildblocks!277
alsa-lib: new module for version 1.2.5.1 01d8698b41
Merge branch '207-alsa-lib-new-module-for-version-1-2-5-1' into 'master' 594a309a3f 
Resolve "alsa-lib: new module for version 1.2.5.1"

Closes #207

See merge request Pmodules/buildblocks!278
liba52: new module for version 0.7.4 e116c20803
Merge branch '208-liba53-new-module-for-version-0-7-4' into 'master' 39981ba2cb 
Resolve "liba53: new module for version 0.7.4"

Closes #208

See merge request Pmodules/buildblocks!279
liv555: new module for version 2021.06.29 ffb94b62f1
Merge branch '209-live555-new-module-for-version-2021-06-29' into 'master' 4f1e1ee246 
Resolve "live555: new module for version 2021.06.29"

Closes #209

See merge request Pmodules/buildblocks!280
UCX: moving releases to stable and deprecated 277f70e361
Merge branch 'ucx_update' into 'master' 5f904ba81d 
UCX: moving releases to stable and deprecated

See merge request Pmodules/buildblocks!282
Update README.md 79dfb3f5d4
Merge branch 'gsell-master-patch-70368' into 'master' 58777b5d08 
Update README.md

See merge request Pmodules/buildblocks!283
Update README.md cb33db107b
Merge branch 'gsell-master-patch-78244' into 'master' a0b33a6943 
Update README.md

See merge request Pmodules/buildblocks!284
Update README.md 1de61ab6ff
Merge branch 'gsell-master-patch-62106' into 'master' 03e5a13399 
Update README.md

See merge request Pmodules/buildblocks!285
Update README.md c8ddbe3988
Merge branch 'gsell-master-patch-79373' into 'master' 1e188a763b 
Update README.md

See merge request Pmodules/buildblocks!286
Add UCX 1.11.2 f2d9e6b1dc
Merge branch 'ucx_1.12.0' into 'master' 9e20938bcd 
Add UCX 1.11.2

See merge request Pmodules/buildblocks!287
Add OpenMPI 4.1.1 (gcc-10.2.0,ucx-1.11.2,cuda-11.3.0) ea66fe7d8c
Merge branch 'openmpi_411' into 'master' 8e80c89f3c 
Add OpenMPI 4.1.1 (gcc-10.2.0,ucx-1.11.2,cuda-11.3.0)

See merge request Pmodules/buildblocks!288
OpenMPI 4.1.1 with UCX 1.10 eaa93e0e24
Merge branch 'openmpi_411' into 'master' 5f5f0c3d22 
OpenMPI 4.1.1 with UCX 1.10

See merge request Pmodules/buildblocks!289
ANSYS with overlays dabcf08acd
Alphafold/2.1.1 with multimer support! 9859bcb6f0
Merge branch 'alphafold' into 'master' 38e55bb775 
Alphafold/2.1.1 with multimer support!

See merge request Pmodules/buildblocks!291
Update README.md 803cf3114a
Merge branch 'caubet_m-master-patch-50743' into 'master' 6f47258f55 
Update README.md

See merge request Pmodules/buildblocks!292
Add: cuda/11.4.3, cuda/11.5.1 - unstable eab2aae1d7
Add: OpenMPI 4.0.7_slurm 4.0.7-1_slurm 4ca1623d7e
Merge branch 'openmpi_4.0.5_cuda_10.4' into 'master' 7839ca1d88 
Openmpi 4.0.5 cuda 10.4

See merge request Pmodules/buildblocks!293
Restore: Libraries UCX 1.11.2_slurm, which was deleted by mistake dde68bb054
Merge branch 'openmpi_4.0.5_cuda_10.4' into 'master' 40041cccf3 
Restore: Libraries UCX 1.11.2_slurm, which was deleted by mistake

See merge request Pmodules/buildblocks!294
Mark psi-python as conflicting with anaconda. 85386ace59 
These changes have already been applied by hand.
ANSYS with overlays 0b44a874eb
Added ANSYS overlays 22dbc179d0
Added ANSYS/2022R1 in merlin overlays ec623f6e6f
Added ANSYS/2022R1 in merlin overlays 8cabc31e61
Merge branch 'ansys' of https://gitlab.psi.ch/Pmodules/buildblocks into ansys 5e3909c06b
Merge branch 'ansys' into 'master' 17b1f6b2ef 
Ansys

See merge request Pmodules/buildblocks!296
Update ansys 510f7f50ac
Merge branch 'ansysupdate' into 'master' cd5030439b 
Update ansys

See merge request Pmodules/buildblocks!297
New module: modelcraft/2.2.3 692881899e
Merge branch 'anaconda' into 'master' 4518dc2dd0 
Mark psi-python as conflicting with anaconda.

See merge request Pmodules/buildblocks!295
Merge branch 'modelcraft' into 'master' d46d0e643a 
New module: modelcraft

See merge request Pmodules/buildblocks!298
Deprecating crYOLO/1.2.3 and moving other versions to stable 0fa181b856 
1.2.3 was based on miniconda and should be removed in the future
Merge branch 'cryolo' into 'master' c1d243d795 
Deprecating crYOLO/1.2.3 and moving other versions to stable

See merge request Pmodules/buildblocks!299
Add new directory c8768f37b6
build-block for erlang added 3bd8a0db53
build-block for wxWidgets added 2fee079a27
sha sum added, build with SSL support d583b98876
build with SSL support 05c6f9bc48
variants file for rhel7 added b7046ec6ec
Add new file c1bfdf8c5e
Update README.md dcc1470971
Update README.md 8a23e552ee
Merge branch 'gsell-master-patch-24720' into 'master' 816041cf44 
Update README.md

See merge request Pmodules/buildblocks!303
Add new directory f4dc491504
Add new file bac7f95d07
Update README.md 63ad13a0e0
Update README.md 96dd4aff5a
modulefile added e56d4eae8e
variants file added a6dce64ba5
Add ucx/1.11.2-3_slurm with cuda/11.1.0 d88656c94e
Merge branch 'ucx_1.11_cuda_11.1' into 'master' 0217c446b3 
Add ucx/1.11.2-3_slurm with cuda/11.1.0

See merge request Pmodules/buildblocks!305
Move cuda 11.4.3,11.5.1 to stable 0fc8a2ecaf
UCX: moving to stable and add v1.12.1 821f8c1faa 
Move `unstable` releases to `stable`
Add new v1.12.1 with CUDA v11.5.1
OpenMPI: v4.0.7 to stable; new v4.1.3 26d70ed734 
Moved v4.0.7 releases from `unstable` to `stable`
Added new v4.1.3 with CUDA v1.5.1 and UCX v1.12.1
Merge branch 'openmpi_4.1.3_cuda_11.5' into 'master' 37a142722e 
UCX, CUDA and OpenMPI update

See merge request Pmodules/buildblocks!310
Update README.md db000e35d7
Merge branch 'gsell-master-patch-80997' into 'master' c8d35e596d 
Update README.md

See merge request Pmodules/buildblocks!311
Update README.md ae522d5556
Merge branch 'gsell-master-patch-49803' into 'master' b83016d5ea 
Update README.md

See merge request Pmodules/buildblocks!312
HDF5+NetCDF with openmpi 4.1.3 e26c71b8b1
remove pnetcdf 1.10.0 a7bc0c8599
Merge branch 'hdf5_netcdf' into 'master' 8cf1a0c778 
HDF5+NetCDF with openmpi 4.1.3

See merge request Pmodules/buildblocks!313
Fix libnvidia-ml 16dc7b3165
Merge branch 'libnvidia-ml' into 'master' cc6d5c8c26 
Fix libnvidia-ml

See merge request Pmodules/buildblocks!319
build-block for bash added 57d6616d5f
Update LIBRARY_PATH,C_INCLUDE_PATH,CPLUS_INCLUDE_PATH f154bc2757
Merge branch 'cuda_update' into 'master' bbe44f711a 
Update LIBRARY_PATH,C_INCLUDE_PATH,CPLUS_INCLUDE_PATH

See merge request Pmodules/buildblocks!323
Add ORCA 5.0.3 d4fddd3c1e
Add ORCA 5.0.3 7976b44db8
Merge branch 'orca' into 'master' f1fc39a866 
Add ORCA 5.0.3

See merge request Pmodules/buildblocks!326
eigen3: mark all modules as deprecated 71cc0dd6d4
eigen3: update download URL 117828d56b
eigen: build-block added 639d268fdb 
the old eigen3 modules are discontinued
eigen: out-commented pre configure function removed 86cf804674
eigen: bugfix in YAML variants file 170f6447ba
eigen: fix directory where header files are installed 056104c3dc 
Eigen installs header files by default in
${EIGEN_INCLUDE_DIR}/eigen3.
New Proteus module e6af365f8d 
Proteus v1.4.0 as the first version in PModules
Directly dependency with ROOT software. Required also Eigen (Pmodule) when
compiling, Doxygen (PModule) and Sphinx (python-sphinx as local package)
for building the documentation.
Merge branch 'proteus' into 'master' f98aa7c200 
New Proteus module

See merge request Pmodules/buildblocks!327
build-script: type in include dir fixed 978c28f0a8
elegant, modulefile: set OAG_TOP_DIR e43ac63efd
gcc: gcc/11.2.0 added e3344d16a7
New Scalapack 2.2.1-1 module 086b1ad754 
Also compiled dependencies: openmpi/4.1.3_slurm, boost/1.79.0_slurm.
Merge branch 'scalapack' into 'master' e1eb06832d 
New Scalapack 2.2.1-1 module

See merge request Pmodules/buildblocks!328
boost boost/1.53.0_slurm 6b0e62b620
Add impi 20.4 21.4 22.1 d0f0393413
krb5: new module added 62630dccbe
Merge branch '229-krb5-new-pmodule-for-mit-kerberos5' into 'master' 57271fe8bd 
Resolve "krb5: new Pmodule for MIT Kerberos5"

Closes #229

See merge request Pmodules/buildblocks!329
bash: built version 5.1.16 66ce7b25bf
bash: YAML variants file added 3a40cc843a
Merge branch '226-bash-5-1-16-new-module' into 'master' 0849f73f50 
Resolve "bash/5.1.16 new module"

Closes #226

See merge request Pmodules/buildblocks!321
cmake/3.23.2 built 0c36da586b
Merge branch '227-cmake-3-23-3' into 'master' 2b2bb5b4e7 
Resolve "cmake/3.23.3"

Closes #227

See merge request Pmodules/buildblocks!322
patchelf/0.14.5 built 4bbb229c85
Merge branch '228-patchily-0-14-5-2' into 'master' 3c3c2c62df 
Resolve "patchelf/0.14.5"

Closes #228

See merge request Pmodules/buildblocks!325
ioapi/3.2 built with gcc/11.2.0, openmpi/4.1.3_slurm, hdf5/1.13.1_slurm 3b8d550f88
Merge branch '225-ioapi-3-2-with-gcc-11-2-0-openmpi-4-1-3_slurm-hdf5-1-13-1_slurm' into 'master' 96fd15697a 
Resolve "ioapi/3.2 with gcc/11.2.0 openmpi/4.1.3_slurm, hdf5/1.13.1_slurm"

Closes #225

See merge request Pmodules/buildblocks!320
gcc: current versions built 094af3217b
Merge branch '216-gcc-11-2' into 'master' fd95c36765 
Resolve "gcc/11.2"

Closes #216

See merge request Pmodules/buildblocks!306
eigen/3.3.9,3.4.0: released as stable 58af1c96bf
Merge branch '221-eigen3-3-3-8-and-3-4-0-for-current-compilers' into 'master' 446935bfbf 
Resolve "eigen3/3.3.8 and 3.4.0 for current compilers"

Closes #221

See merge request Pmodules/buildblocks!315
wxWidgets: variants file changed to YAML, marked as stable fc4bd1d29e
Merge branch '212-pmodule-for-wxwidgets' into 'master' 0f835ecb69 
Resolve "Pmodule for wxWidgets"

Closes #212

See merge request Pmodules/buildblocks!300
erlang/24.2.1: variants file changed to YAML, marked as stable d1363d62c0
Merge branch '213-new-module-for-erlang' of gitlab.psi.ch:Pmodules/buildblocks into 213-new-module-for-erlang d7dc1726b7
Merge branch '213-new-module-for-erlang' into 'master' 86292b8297 
Resolve "new module for Erlang"

Closes #213

See merge request Pmodules/buildblocks!301
elegant: patch OAG Tcl scripts 3c53916ff3
elegant: update rel.stages, use YAML variants file bfd5bcc1d5
Merge branch '223-elegant-2021-4-with-oagtcl' into 'master' f94cbcf291 
Resolve "elegant 2021.4 with oagtcl"

Closes #223

See merge request Pmodules/buildblocks!317
tiff: new version 4.3.0, use YAML variants file e0b1ff83d3
Merge branch '224-tiff-4-3-0' into 'master' 8a3d529360 
Resolve "tiff 4.3.0"

Closes #224

See merge request Pmodules/buildblocks!318
openssl: 1.1.1{m,q} added and marked as stabble 1d63253f53
Merge branch '230-openssl-versions-1-1-1m-and-1-1-1q' into 'master' 3a0df02b8e 
Resolve "openssl versions 1.1.1m and 1.1.1q"

Closes #230

See merge request Pmodules/buildblocks!330
Python: update variants file and migrated to YAML format ae1739cd4a
Merge branch '231-python-build-3-9-10' into 'master' ad3b6d2af0 
Resolve "Python: build 3.9.10"

Closes #231

See merge request Pmodules/buildblocks!331
fftw: migrate to YAML variants file e1156fda7e
Merge branch '233-fftw-3-3-10-with-open-mpi' into 'master' d1b6c5a173 
Resolve "fftw/3.3.10 with open-mpi"

Closes #233

See merge request Pmodules/buildblocks!333
gnuplot: built 5.4.3, migrate variants file to YAML 73fe5982ce
Merge branch '214-gnuplot-5-4-3' into 'master' b91bc7bb49 
Resolve "gnuplot/5.4.3"

Closes #214

See merge request Pmodules/buildblocks!302
OpenBLAS: version 0.3.20 built, migrate to YAML format 4298f3b507
Merge branch '232-openblas-0-3-20' into 'master' 33e790fb2b 
Resolve "OpenBLAS/0.3.20"

Closes #232

See merge request Pmodules/buildblocks!332
lapack: built variants for 3.10.0, cleanup, migrate to YAML 9625693bb3
Merge branch '218-lapack-3-9-0-with-gcc-10-3-and-lapack-3-10-0' into 'master' 6e5690002d 
Resolve "lapack/3.9.0 with gcc/10.3 and lapack/3.10.0"

Closes #218

See merge request Pmodules/buildblocks!308
hdf5_serial: migrate to YAML d0e893ccf4
hdf5_serial: docfiles installation updated 4aedea7282
hdf5_serial: setenv HDF5_ROOT in modulefile 8e3e9b7b45
Merge branch '220-hdf5_serial-version-1-10-7-and-newer-for-gcc-10-3-0-and-newer' into 'master' 0d993555c0 
Resolve "hdf5_serial: version 1.10.7 and newer for gcc 10.3.0 and newer"

Closes #220

See merge request Pmodules/buildblocks!314
krb5: update modulefile 69e34df4f4
krb5/1.20: release stage changed to stable 149c6af464
Merge branch '229-krb5-new-pmodule-for-mit-kerberos5' into 'master' 8911638467 
Resolve "krb5: new Pmodule for MIT Kerberos5"

Closes #229

See merge request Pmodules/buildblocks!334
gsl/2.{6,7}: built for current GCC versions, migrate to YAML format 40c7212a77
Merge branch '234-gsl-2-7-build-for-current-gcc-s' into 'master' 0402ca39a3 
Resolve "gsl/2.7: build for current GCC's"

Closes #234

See merge request Pmodules/buildblocks!335
Merge branch '215-fluka-flair-module' into 'master' 66a13e4813 
Resolve "fluka/flair module"

Closes #215

See merge request Pmodules/buildblocks!304
Scalapack and dependencies update 0276a5717d
Merge branch 'scalapack' into 'master' 29174a464b 
Scalapack

See merge request Pmodules/buildblocks!339
slsDetectorPackage: new module added 1cb47a505f
Merge branch '237-slsdetectorpackage-build-new-module' into 'master' 4ded96eb44 
Resolve "slsDetectorPackage: build new module"

Closes #237

See merge request Pmodules/buildblocks!338
Add new file 0a715f51a5
Update variants 227ff48d4e
Merge branch 'gsell-master-patch-75975' into 'master' 8edd8ef3ff 
Add new file

See merge request Pmodules/buildblocks!340
git: use YAML config file 4872252855
git: YAML config file edited cc3cb2d684
git: wrong prefix fixed in build-script 4a31efabad
Merge branch '235-git-2-37' into 'master' 44b0e702ff 
Resolve "git/2.37"

Closes #235

See merge request Pmodules/buildblocks!336
zmq: initial commit 3a56909ffd
zeromq: cleanup and released 4.3.4 as stable 076648dd04
Merge branch '236-zmq-build-new-module' into 'master' 4ef37d678f 
Resolve "zmq: build new module"

Closes #236

See merge request Pmodules/buildblocks!337
Add boost with impi/22.1. Move bvalidated boost versions to stable (and dependencies) 450864ff33
Merge branch 'boost_impi221' into 'master' a1ce8d4d98 
Add boost with impi/22.1. Move bvalidated boost versions to stable (and dependencies)

See merge request Pmodules/buildblocks!342
Added BOOST_ROOT inmodulefiles 9d65151fc6
Merge branch 'boost_set_ROOT' into 'master' ef36dc833a 
Added BOOST_ROOT  inmodulefiles

See merge request Pmodules/buildblocks!346
ANSYS: 2022R1 stable, new 2022R2 unstable f7c5af1d62
Merge branch 'ansys_2022R2' into 'master' d9b84f5585 
ANSYS: 2022R1 stable, new 2022R2 unstable

See merge request Pmodules/buildblocks!347
ANSYS: 2ANSYS fix modulefile cf977320b2
Merge branch 'ansys_2022R2' into 'master' 701a3bedf9 
ANSYS: 2ANSYS fix modulefile

See merge request Pmodules/buildblocks!348
add relion 4.0.0 2eca89992b
Update README.md f239ce0491
Merge branch 'gsell-master-patch-16637' into 'master' c389daa638 
Update README.md

See merge request Pmodules/buildblocks!350
Update README.md 6ce67ad98b
Merge branch 'gsell-master-patch-71311' into 'master' c09ebda092 
Update README.md

See merge request Pmodules/buildblocks!351
Create cryoDRGN conda environment 832a41da14
Merge branch 'relion400' into 'master' fd15dbcf50 
add relion 4.0.0

See merge request Pmodules/buildblocks!349
Updating relion release status 667790976d
Deprecating older relion versions db36627b60 
These depended on deprecated openmpi/4.0.4_slurm, so they have to also
be deprecated.
Merge branch 'master' into 'master' d4b5b11f18 
Update relion release status

See merge request Pmodules/buildblocks!352
New module: PEET 05653093ff
Merge branch 'peet' into 'master' fee9a03019 
New module: PEET

See merge request Pmodules/buildblocks!353
Create cryodrgn pmodule 052151c0a9 
Wraps the conda environment
Merge branch 'cryodrgn' into 'master' a09fe1e77b 
Create cryodrgn/1.1.0 pmodule

See merge request Pmodules/buildblocks!354
Tool template added 6ded885a81
Merge branch '241-add-build-block-template-in-group-tools' into 'master' 9e6cb5b5f1 
Resolve "add build-block template in group Tools"

Closes #241

See merge request Pmodules/buildblocks!355
Add new UCX releases 5d7da18e1a
Add impi/22.2 ba5ff810ad
Merge branch 'ucx_ompi405' into 'master' 36ed6ecb87 
Ucx ompi405

See merge request Pmodules/buildblocks!358
Add Paraview 5.10.1 3794b956c2
Merge branch 'paraview_5.10' into 'master' 79fe4db4f1 
Add Paraview 5.10.1

See merge request Pmodules/buildblocks!359
openmpi/4.1.4 with gcc/10.4.0 a24137048a
Merge branch '247-build-openmpi-4-1-4-with-gcc-10-4-0' into 'master' 52adbe25b8 
Resolve "build openmpi/4.1.4 with gcc/10.4.0"

Closes #247

See merge request Pmodules/buildblocks!363
build zlib/1.2.13 9bfb76a59f
Merge branch '248-build-zlib-1-2-13' into 'master' 16dd5fb580 
Resolve "build zlib/1.2.13"

Closes #248

See merge request Pmodules/buildblocks!364
gsl/2.7 with gcc/10.4.0 added c515be0f00
Merge branch '250-build-gsl-2-7-with-gcc-10-4-0' into 'master' 6af173e283 
Resolve "build gsl/2.7 with gcc/10.4.0"

Closes #250

See merge request Pmodules/buildblocks!366
Install IMOD/4.11.20 4e437aefde 
This is the first version to use modbuild; IMOD/4.9.5 was installed
manually.
Merge branch 'imod' into 'master' 58881d8169 
Install IMOD/4.11.20

See merge request Pmodules/buildblocks!368
hdf5: use glob for installing README{.md} d1aa910049
hdf5: version 1.10.9 with gcc/10.4.0 openmp/4.1.4 added 2ab3b8cdd0
Merge branch '249-build-hdf5-1-10-8-with-gcc-10-4-0' into 'master' fa5e80668d 
Resolve "build hdf5/1.10.8 with gcc/10.4.0"

Closes #249

See merge request Pmodules/buildblocks!365
gcc/10.4.0 added a5bd32835d
Merge branch '246-compile-gcc-10-4-0' into 'master' a7660cb619 
Resolve "compile gcc/10.4.0"

Closes #246

See merge request Pmodules/buildblocks!362
Add ucx-1.13.1-3_slurm 900d340bd7
Merge branch 'ucx_1.13' into 'master' 7f80e06243 
Add ucx-1.13.1-3_slurm

See merge request Pmodules/buildblocks!369
Add new MotionCor2 variants 98daea70bd 
Also standardize the MotionCor2 wrapper so that it's the same for all
module versions regardless of cuda support
Merge branch 'motioncor2' into 'master' 3038fd0725 
Add new MotionCor2 variants

See merge request Pmodules/buildblocks!370
Marking MotionCor2 stable 7507f282c8
Create ctffind4 build script & install 4.1.14 e783deb71e
Merge branch 'motioncor2' into 'master' c5f60e8b7a 
Marking MotionCor2 stable

See merge request Pmodules/buildblocks!372
Merge branch 'ctffind4' into 'master' 40ec5c8926 
Create ctffind4 build script & install 4.1.14

See merge request Pmodules/buildblocks!373
H5root: release stages fixed 245e2e77ca
Merge branch '253-h5root-fix-release-stages' into 'master' a4f6d90ada 
Resolve "H5root: fix release stages"

Closes #253

See merge request Pmodules/buildblocks!374
gtest/1.11.0 with recent compilers up to gcc/10.4.0 34b31a2e53
openmpi/4.1.4_slurm with gcc/10.4.0 31fcb90368
H5hut/2.0.0rc6 with gcc/10.4.0, openmpi/4.1.4 c34cd96e19
trilinos/13.0.1 with gcc/10.4.0, openmpi/4.1.4 aac448317d
MITHRA/2.0 with gcc/10.4.0, openmpi/4.1.4 61d911d686
OPAL/2022.1 with gcc/10.4.0, openmpi/4.1.4 78f8aabdbc
amrex/18.07_3d with gcc/10.4.0, openmpi/4.1.4 c7aaea8e5a
boost/1.79.0 with gcc/10.4.0, openmpi/4.1.4 8dd2d85427
hdf5/1.10.8 with gcc/10.4.0, openmpi/4.1.4 2ffdf969a1
hdf5/1.10.8 installation of README.md fixed 76a36235e3
parmetis/4.0.4 with gcc/10.4.0, openmpi/4.1.4 6b314b4e80
openmpi/4.1.4 release stage changed to stable 2fa77b7a93
MITHRA/2.0 release stage changed to stable a6e8fb481f
amrex/18.07_3d release stage changed to stable 9efd4e6e23
Merge branch 'master' into 251-build-modules-with-gcc-10-4-0 4b11bcaddc
hdf5/1.10.8 release stage changed to stable 158e43e814
OpenBLAS/0.3.21 release stage changed to stable 989703f218
parmetis/4.0.3 release stage changed to stable daf5f2d908
parmetis/4.0.3 release stage changed to stable 1d2eea65b9
trilinos/13.0.1 release stage changed to stable 4c5c49cef9
trilinos/13.0.1 release stage changed to stable 7cf7e55ece
zlib/1.2.13 release stage changed to stable ae70cff27b
boost/1.79.0 release stage changed to stable 6935101740
Python/2.7.12 release stage changed to stable 353dcddeba
H5hut/2.0.0rc6 release stage changed to stable 97d44669ee
gsl/2.7 release stage changed to stable 0d8820b4de
OPAL/2022.1.0 release stage changed to stable 103502e9dd
Merge branch '251-build-modules-with-gcc-10-4-0' into 'master' 0b4e36afbe 
Resolve "build modules with gcc/10.4.0"

Closes #251

See merge request Pmodules/buildblocks!367
Add Go module 5fa71752fc
Update Go module 1b71a304f6
Merge branch 'golang' into 'master' 9146e63a1d 
Golang

See merge request Pmodules/buildblocks!376
impi: deprecate old versions 736c791daf
Merge branch '254-impi-change-release-stage-to-deprecated-for-version-19-4-and-older' into 'master' de95ce8614 
Resolve "impi: change release stage to deprecated for version 19.4 and older"

Closes #254

See merge request Pmodules/buildblocks!375
YAML config file renamed 6a5c4d6ccf
YAML config file updated 626222e67f
legacy config file added df2e66fe27
cosmetic changes to build script 4e5fc497cd
Merge branch '238-gnuplot-5-4-4' into 'master' 4d6c7e61f4 
Resolve "gnuplot/5.4.4"

Closes #238

See merge request Pmodules/buildblocks!341
git: YAML config file renamed db932c9285
git: legacy config file added again fc972bd5c1
git: YAML config file updated 2aab56d663
git: build script works again with version 1.0 eae3e2ea1c
git-lfs: module added ebc3d733d0
git-lfs: fixes in build script 27d3ff479b
git-lfs: patchelf added as dependency e5a0a514e0
HDF5_blosc: rel.stage of version compiled with deprecated compiler changed to deprecated f210f736e5
Merge branch '256-hdf5_blosc-deprecate-version-compiled-with-a-deprecated-compiler' into 'master' 5b40e023ba 
Resolve "HDF5_blosc: deprecate version compiled with a deprecated compiler"

Closes #256

See merge request Pmodules/buildblocks!379
git-lfs: rel.stage of 3.3.0 changed to stable 39e58ad9ea
git: rel.stage of 2.37.2 and 2.39.1 changed to stable 24ff7ae2ce
Merge branch '255-git-lfs-module' into 'master' 4f17ab8178 
Resolve "git-lfs module"

Closes #255

See merge request Pmodules/buildblocks!378
Merge branch '239-git-2-37-1' into 'master' 41ff8e1c5c 
Resolve "git/2.37.1"

Closes #239

See merge request Pmodules/buildblocks!343
root: YAML config file added cd44e77de2
root: legacy variants file updated c55829f869
root: build-in fftw enabled 8d32c7db62
Merge branch '222-root-new-version-with-fftw' into 'master' f551579c5d 
Resolve "root new version with FFTW"

Closes #222

See merge request Pmodules/buildblocks!316
ninja: module added dc891ce729
Release PEET 1.16.0 06173e5ed2
Merge branch 'peet' into 'master' 5c4503ccfb 
Release PEET 1.16.0

See merge request Pmodules/buildblocks!380
ninja/1.11.1: release stage changed to stable 50e817ee28
Merge branch '244-build-module-for-ninja' into 'master' dfeae47ae7 
Resolve "build module for ninja"

Closes #244

See merge request Pmodules/buildblocks!360
Add aws cli f2fef41a37 
Close: #258
FIX: change release stages to correct stage f8913df163
Merge branch 'fix_bad_status' into 'master' ab1b8a6e45 
FIX: change release stages to correct stage

See merge request Pmodules/buildblocks!384
Update README.md fd169dff28
Merge branch 'gsell-master-patch-64421' into 'master' 8d6c0f3e9c 
Update README.md

See merge request Pmodules/buildblocks!385
Add UCX 1.14.0-rc5 0ef73ff925
Merge branch 'openmpi_415' into 'master' 5d264df29f 
Add UCX 1.14.0-rc5

See merge request Pmodules/buildblocks!386
Add GAMS d340e2e2d4
Merge branch 'gams_42.3.0' into 'master' 6ca0a052f8 
Add GAMS

See merge request Pmodules/buildblocks!387
Add modulefile. Deprecate 30.3.0 ca8bc1aca8
Merge branch 'gams_42.3.0' into 'master' 5b6349e14b 
Add modulefile. Deprecate 30.3.0

See merge request Pmodules/buildblocks!388
Update README.md a1b86d91d1
Merge branch 'gsell-master-patch-55146' into 'master' 16e18650a4 
Update README.md

See merge request Pmodules/buildblocks!389
Update README.md a5ca8c2164
Merge branch 'gsell-master-patch-88340' into 'master' 88887165f2 
Update README.md

See merge request Pmodules/buildblocks!390
Release relion 4.0.1 5e881abe45
Merge branch 'relion' into 'master' 6807f66bee 
Release relion 4.0.1

See merge request Pmodules/buildblocks!391
Create charmm/47.2 module acd50120e5
Merge branch 'charmm' into 'master' 26233e278f 
Create charmm/47.2 module

See merge request Pmodules/buildblocks!392
Add MotionCor2/1.6.4 ea8a7a0d97
Merge branch 'motioncor2' into 'master' 6ee8831c21 
Release MotionCor2/1.6.4

See merge request Pmodules/buildblocks!393
ANSYS: variants directory to files c4cbea14f7
Merge branch 'ansys_fix' into 'master' e6efbb7d1e 
Ansys fix

See merge request Pmodules/buildblocks!394
Add CUDA 12.1.1 508ce3b7d1
Add cuda 12.1, 11.8 f2fb87b5b7
Add cuda 12.1, 11.8 4311f502c9
Merge branch 'cuda12.1' into 'master' 95203dff61 
Cuda12.1

See merge request Pmodules/buildblocks!396
Add gtest/1.13.0 a35c14a151
Merge branch 'gtest' into 'master' 1d9d05a24f 
Add gtest/1.13.0

See merge request Pmodules/buildblocks!397
Add GDRCopy, UCX ae7716dd36
ADD: EMAN build file & EMAN/2.99.47 installatioN 61f03792d2
Merge branch 'EMAN' into 'master' 7d202b9481 
ADD: EMAN build file & EMAN/2.99.47 installatioN

See merge request Pmodules/buildblocks!395
Cuda 12.1.1 and UCX 1.14.1 with Cuda 12.1.1 2c80d32107
OpenMPI 4.1.5 with CUDA 12.1.1 and UCX 1.14.1 support a047c0f6d1
Merge branch 'cuda12.1' into 'master' af7c5fcbec 
Cuda12.1

See merge request Pmodules/buildblocks!402
Add pmix 7bbd8afd98
Merge branch 'pmix' into 'master' dd978e84af 
Add pmix

See merge request Pmodules/buildblocks!403
WIP: OpenMPI+Intel 05e8bb37a3
Update fbc02492d7
Intelcc+OpenMPI update 12ac9e9e47
Intelcc+OpenMPI update 4de859b7d0
Intelcc+OpenMPI update c0a0f8a7f9
Merge branch 'pmix' into 'master' 71b098f2fd 
OpenMPI+Intel

See merge request Pmodules/buildblocks!404
Add openmpi with gcc/11.4.0 dda0b0facd
Merge branch 'pmix' into 'master' 9eb9e91b1a 
Add openmpi with gcc/11.4.0

See merge request Pmodules/buildblocks!407
legacy config file added 2c120b3142
Merge branch '266-fftw-3-3-10-for-merlin-with-gcc-10-4-0-and-openmpi-4-1-5_merlin6' into 'master' bd2c03aee3 
Resolve "fftw 3.3.10 for merlin with gcc/10.4.0 and openmpi/4.1.5_merlin6"

Closes #266

See merge request Pmodules/buildblocks!408
Update variants.rhel7 664b9f6cb1
Merge branch 'gsell-master-patch-28395' into 'master' e7f59a239e 
Update variants.rhel7

See merge request Pmodules/buildblocks!409
newer GGCs built bfc455b25d
Merge branch '264-build-modules-for-current-gcc-s' into 'master' 9889fd8656 
Resolve "build modules for current gcc's"

Closes #264

See merge request Pmodules/buildblocks!405
cmake/3.25.2 built 4ea72fbd9b
Merge branch '257-build-cmake-3-25-2' into 'master' aaf2dcb977 
Resolve "build cmake/3.25.2"

Closes #257

See merge request Pmodules/buildblocks!381
gdb/13.1 built 89ea916fca
Merge branch '259-new-build-block-for-gdb' into 'master' 7fe47aca78 
Resolve "new build-block for gdb"

Closes #259

See merge request Pmodules/buildblocks!398
GNU parallel/20230422 built 1998041c53
Merge branch '262-new-build-block-gnu-parallel' into 'master' 8d0b818416 
Resolve "new build-block GNU parallel"

Closes #262

See merge request Pmodules/buildblocks!401
vim: URL changed 59c11ea292
vim/9.0 built 9703540292
Merge branch '261-vim-8-1' into 'master' ecd80090b2 
Resolve "vim 8.1"

Closes #261

See merge request Pmodules/buildblocks!400
moreutils/0.67 built 8253bcde8c
Merge branch '260-new-build-block-for-moreutils' into 'master' a06303bf58 
Resolve "new build-block for moreutils"

Closes #260

See merge request Pmodules/buildblocks!399
wrong url fixed and rebuild everything f4366d36c0
Merge branch '268-gtest-download-url-has-hardcoded-version' into 'master' 35639479a9 
Resolve "gtest: download url has hardcoded version"

Closes #268

See merge request Pmodules/buildblocks!411
add clang 15.0.6 1ebff1e0fb 
update build to compile against correct GCC libstdc++
Merge branch 'clang_15' into 'master' 71509dad58 
add clang 15.0.6

See merge request Pmodules/buildblocks!377
Add Julia 1.9.2 2e6096772a
Fix modulefile Julia 1.9.2 6596693345
Merge branch 'julia' into 'master' 892e1a182a 
Julia

See merge request Pmodules/buildblocks!413
Mark IMOD/4.11.20 as stable a3a83885e0
Merge branch 'IMOD' into 'master' 958a1a2e06 
Mark IMOD/4.11.20 as stable

See merge request Pmodules/buildblocks!414
Add IMOD/4.12.50-beta 708e207ca2 
Beta versions come from a different URL
Merge branch 'IMOD' into 'master' 48faf8f533 
Add IMOD/4.12.50-beta

See merge request Pmodules/buildblocks!415
Add IMOD/4.11.24 release f6a3445a09
Merge branch 'IMOD' into 'master' 89c8795f8e 
Add IMOD/4.11.24 release

See merge request Pmodules/buildblocks!416
Mark PEET/1.16.0 as stable c34c70f631
Merge branch 'PEET' into 'master' c4773d6449 
Mark PEET/1.16.0 as stable

See merge request Pmodules/buildblocks!417
redis build-block added 3d27dcb042
Merge branch '269-new-module-for-redid' into 'master' db9ffd6521 
Resolve "new module for redis"

Closes #269

See merge request Pmodules/buildblocks!418
ADD: arpack-ng module 8429ab5774
FIX: remove files/variants.rhel6 a4cf70ea71
Built dynamo/1.1.538 cef27d8920
Merge branch 'dynamo' into 'master' ba2cc6c466 
Built dynamo/1.1.538

See merge request Pmodules/buildblocks!420
ADD: newest ANSYS version and prepending of ANSYS lumerical bin path b8f8d2545f
Merge branch 'ANSYS/2023R2' into 'master' 7b7c4afe36 
ADD: newest ANSYS version and prepending of ANSYS lumerical bin path

See merge request Pmodules/buildblocks!421
Fix Lumerical LD_LIBRARY_PATH 9f70872eea
Merge branch 'fix_lumerical_path' into 'master' df3193af5c 
Fix Lumerical LD_LIBRARY_PATH

See merge request Pmodules/buildblocks!422
UCX 1.15.0 a5d40df1fe
Merge branch 'ucx_1.15.0' into 'master' 134774a01d 
UCX 1.15.0

See merge request Pmodules/buildblocks!424
add finddqe build folder 892dbbdc45
add line to README edb6f50ad2
Add jinja2 to the hpce-tools environment 4ecf88ce69
Merge branch 'hpce-tools' into 'master' 0360c5bed3 
Add jinja2 to the hpce-tools environment

See merge request Pmodules/buildblocks!426
version 3.23.2 added, YAML build files added c8e9a2b094
gsl/2.7: compile with gcc/{11.4.0,12.1.0} added e556089f27
hdf5_serial: YAML config file and build script added ce9266c735
hdf5_serial: YAML config file and build script added 36a18a3a09
openmpi: use of uninitialised variables fixed 5e69f5bc15
openmpi_slurm: build with compilers gcc/{9.5.0,12.3.0,13.1.0} added 7702e4c313
openmpi: build version 4.1.5 added 4aa7e25919
openmpi: YAML config file added 270be3ca25
H5hut: build v2.0.0rc6 with openmpi/4.1.4 89fc2670d3
H5hut/2.0.0rc6_slurm: build with current GCC and openmpi/4.1.5_slurm d1208d51f5
trilinos/13.4.0: added d8a6b4dc8a
trilinos/13.4.0: added cfced7ddb8
trilinos; version 13.x support added 2ab0509dfa
trilinos: build with YAML e822c1b7a2
nettle: build with YAML ccc78e3573
libidn2: new build-block added e8ee8aee67
MITHRA: pbuild::install() added f2be15edff
MITHRA/2.0: build with openmpi/{4.1.5,4.1.5_slurm} added cc828638f2
amrex: typo fixed in var.name OPENMPI_VERSION 5c9ada5610
amrex/3.15.5,3.15.5_slurm: added with openmpi/4.1.5,4.1.5_slurm 5de25379cc
boost/1.81.0_slurm,1.82.0_slurm,1.81.0: added with openmpi/4.1.5_slurm,4.1.5 3285f9e031
ftw/3.3.10_merlin6: compile with gcc/11.4.0,12.3.0,13.1.0 added ac74533009
hdf5: YAML build added 4cf4676583
hdf5/1.10.8: build with openmpi/4.1.5_slurm,4.1.5 added db5fd74afb
parmetis: YAML config file added 5e2412ec9f
parmetis/4.0.3_slurm,4.0.3: build with openmpi/4.1.5_slurm,4.1.5 added f24b477b7c
Python: update build-script to compile 3.9.17 and 3.9.18 09082dbdd2
Python: version 3.9.17 and 3.9.18 added 120ad33e26
binutils/2.41: version added ea7ce4aff4
cmake: YAML build added 4ceb3e2af2
emacs/29.1: version added 9f1dc01baf
emacs: YAML build added edc31e3dae
git: YAML build script added 4fb06b58d6
git: YAML config file fixed f819546e5f
gnuplot: YAML config added/reviewed 59e1221e33
gnutls: modulefiles fixed 91ba9217ef
gnutls: YAML build files added 8df7ef213d
openssl: rhel7 variants file added 8ed7191881
Merge branch 'master' into 267-toolchain-for-ippl-opal-with-gcc-12-3-0 2f71af1609
openmpi/4.1.5: YAML config reviewed eab7fac248
openmpi: YAM build script added 81d0d552c3
openmpi/4.1.5_slurm: release stage changed to stable in legacy config file aed90f976d
pmix(4.2.4: released as stable 3ba53543d3
pmix: YAML build files added 3a317858fb
hwloc/2.7.1,2.9.1: relased as stable 7ae60052f1
hwloc: YAML build files added d680940d29
libfabric/1.18.0: relased as stable 4251796e7a
libfabric: YAML build files added 529a9352e4
Merge branch '267-toolchain-for-ippl-opal-with-gcc-12-3-0' into 'master' 41924f2a74 
Resolve "toolchain for IPPL/OPAL with gcc/12.3.0"

Closes #267

See merge request Pmodules/buildblocks!410
Ra standard py311 e2341cc0e4
Merge branch 'ra-standard_py311' into 'master' b990a55685 
Ra standard py311

See merge request Pmodules/buildblocks!427
Merge branch '271-build-new-pmodule-finddqe' into 'master' b7bb110db7 
Resolve "build new pmodule finddqe"

Closes #271

See merge request Pmodules/buildblocks!425
Quick fix for notebook widgets 4b951b5150
Merge branch 'ra-standard_py311' into 'master' ee761b7763 
Quick fix for notebook widgets

See merge request Pmodules/buildblocks!428
Update README.md dd82e0afb4
Merge branch 'gsell-master-patch-27598' into 'master' 20289cb287 
Update README.md

See merge request Pmodules/buildblocks!430
openssl: release version 1.1.1v and w as stable 3ec82facc0
git: config for version 2.43.1 added ebc579e855
cmake: deprecated function removed c79c62502f
cmake: version 3.27.8 added; cleanup/review config 55063a7966
Python YAML config and build script added 78ac33d14f
bash: YAML config and build script added 92696ce242
patchelf: YAML config and build script added 4120533cad
Merge branch '267-toolchain-for-ippl-opal-with-gcc-12-3-0' into 'master' e44af53b40 
Resolve "toolchain for IPPL/OPAL with gcc/12.3.0"

Closes #267

See merge request Pmodules/buildblocks!431
Set MotionCor2 path based on the loaded cuda version. 190c57cf82 
Fixes #275.
relion5.0 update d9d6ec9f98
Merge branch '276-relion_5-0-beta' into 'master' d9b6163076 
Resolve "relion_5.0-beta"

Closes #276

See merge request Pmodules/buildblocks!433
Merge branch 'relion5-mc-fix' into 'master' 18454b7782 
Set MotionCor2 path based on the loaded cuda version.

Closes #275

See merge request Pmodules/buildblocks!432
ADD: nvhidia 4.3 and 23.5 SDKK related openmpi and qe/7.3.1 CPU&GPU 993a57c8da
datacatalog/2.2.0 57db11bdbf 
This migrates to installing from github.
Marking old versions as deprecated 7bb0fc9959 
These can be removed after some time. They don't work anyways.
Merge branch 'datacatalog' into 'master' 86d42f8735 
datacatalog/2.2.0

See merge request Pmodules/buildblocks!437
ADD: config.yaml for clhep and geant4 a1bb54d17f
add tomodrgn 18e0912f98
Merge branch '277-new-tomodrgn-module' into 'master' ca73e08c2e 
Resolve "new tomodrgn module"

Closes #277

See merge request Pmodules/buildblocks!439
Update README.md 51070a6690
Merge branch 'usov_i-master-patch-79027' into 'master' f18abfae8b 
Update README.md

See merge request Pmodules/buildblocks!441
Release datacatalog 2.2.1 c2c925856c 
Features:
- SciCat GUI works on RHEL8
- Updates download URL and untar procedure
Merge branch 'datacatalog' into 'master' 666b93065f 
Release datacatalog 2.2.1

See merge request Pmodules/buildblocks!442
Merge branch 'gpu_updates' into 'master' b40d6fd4dd 
ADD: nvhidia 4.3 and 23.5 SDKK related openmpi and qe/7.3.1 CPU&GPU

See merge request Pmodules/buildblocks!434
add cryocare module 6a28c61c08
Merge branch '279-add-cryocare' into 'master' 778e8b87b6 
Resolve "add cryocare"

Closes #279

See merge request Pmodules/buildblocks!443
Resolve "openmpi 4.1.6 without libfabric" 78e59c22b5
Merge branch '280-openmpi-4-1-6-without-libfabric' into 'master' 28461f0b1c 
Resolve "openmpi 4.1.6 without libfabric"

Closes #280

See merge request Pmodules/buildblocks!444
gcc: new versions added c4f4291c94
Merge branch '281-gcc-compile-new-versions' into 'master' 1a59b9ab47 
Resolve "gcc: compile new versions"

Closes #281

See merge request Pmodules/buildblocks!445
gcc: YAML config for gmp, mpfr, mpc, gcc 9b77d1339f
gcc: old config files removed 0542111f2d
gcc: cleanup and YAML config 76ccc68c85
version key fixed 913cabaf7e
Merge branch '283-gcc-yaml-config-files-for-gmp-mpfr-and-mpc' into 'master' 6a8cb7825b 
Resolve "gcc: YAML config files for gmp, mpfr and mpc"

Closes #283

See merge request Pmodules/buildblocks!447
update 1 d3e38214d2
openmpi/pmix: build script and config updated for Alps a4570581bb
openmpi: add config for 4.1.6 for Alps e9bb744764
OpenBLAS: use YAML config file 4d5fd43427
Merge branch '282-openblas-update-build-script-and-build-new-version' into 'master' b39a946861 
Resolve "openblas: update build-script and build new version"

Closes #282

See merge request Pmodules/buildblocks!446
openmpi: update build-script and config f949cc221c
Cuda f184d5fef9
Update openmpi and libevent a477e63c9e
Add older versions of pmix. Removed suffix for Alps Openmpi 617b9752e9
Enable static. Enable UCX 63b50624e7
Remove UCX support for Alps ed4c5cb028
Clean old code 41987dcbcc
Fixes dbdc24cdb3
Enable shared and static libraries d9da946fff
openmpi: update build script and config 2172928ee3
openmpi: error in build script fixed c4bea947a4
Add Lustre support 8a14e64118
fluka4: version 4.0 added. Use YAML config file. ff79712a59
Merge branch 'fluka' into 'master' f9ad535b01 
ADD: fluka4.4 build and config scripts

See merge request Pmodules/buildblocks!436
Add openmpi+intelcc. Update Slurm 521fdfa309
Hardcode Cray libfabric 5535d2b4e5
openmpi: fixes for Ra, Merlin6 & 7 cc82468009
gcc: changes to build on GraceHopper 6b973497c7
git: merge conflict resolved 18e60ef789
Merge branch '284-openmpi-openmpi-for-alps' into 'master' 99d5fb1578 
Resolve "openmpi: openmpi for Alps"

Closes #284

See merge request Pmodules/buildblocks!448
Merge branch 'master' into '285-gcc-fix-build-block-for-gracehopper' 83e049ce61 
# Conflicts:
#   Compiler/openmpi/files/config.yaml
Merge branch '285-gcc-fix-build-block-for-gracehopper' into 'master' 4776bf1ac5 
Resolve "gcc: fix build-block for GraceHopper"

Closes #285

See merge request Pmodules/buildblocks!450
build files for new miniconda base 2024.08 d786b606ee 
added 2 conda environments
- jupyterhub-4.1.6_lab4_py3.12
- datascience_2024_py3.12
Merge branch '290-new-miniconda-installation-2024-08-in-anaconda-pmodule' into 'master' 012a162eff 
build files for new miniconda base 2024.08

Closes #290

See merge request Pmodules/buildblocks!454
v4.1.6 with intel 22.2 and minor fixes bf31c51c6b
Merge branch 'openmpi_416_intelcc222' into 'master' 1ea4ff519a 
v4.1.6 with intel 22.2 and minor fixes

See merge request Pmodules/buildblocks!458
Mpich merlin7 cbbd833301
Merge branch 'mpich_merlin7' into 'master' efee029645 
Mpich merlin7

See merge request Pmodules/buildblocks!457
hwloc: use YAML config file cc8d600d40
Merge branch '291-hwlock-yaml-config' into 'master' c8b2688753 
Resolve "hwlock: YAML config"

Closes #291

See merge request Pmodules/buildblocks!459
hwloc: version 2.11.1 added d459fb0878
hwloc: shasum added for 2.11.1 62b6760172
Merge branch '292-hwloc-version-2-11-1' into 'master' 16e8f798e6 
Resolve "hwloc version 2.11.1"

Closes #292

See merge request Pmodules/buildblocks!460
git: build-block reviewed 319dde3b73
Merge branch '293-git-review-build-block' into 'master' 4bff43b044 
Resolve "git: review build-block"

Closes #293

See merge request Pmodules/buildblocks!461
parmetis: build-block reviewed f3ad8eb342
Merge branch '294-parmetis-review-build-block' into 'master' fc84d926e4 
Resolve "parmetis: review build-block"

Closes #294

See merge request Pmodules/buildblocks!462
getopt: reviewed, YAML config 8022044087
Merge branch '295-getopt-review-build-block' into 'master' 7777b4d004 
Resolve "getopt: review build-block"

Closes #295

See merge request Pmodules/buildblocks!463
Libfabric rework for Pmodules 1.1.22+ 66117615f1
Merge branch 'ofi_1.22.0' into 'master' 5aaf656da3 
Libfabric rework for Pmodules 1.1.22+

See merge request Pmodules/buildblocks!455
cuda: review and YAML config file ef76df3a07
cuda: set library pathes on non-gpu systems c9bda4b5ee
Add gcc 8.5.0 for ALPS ec9f722063
patchelf: 0.18.0 added; YAML config 320261af89
add napari module 3a53e81e88
Merge branch '303-em_napari' into 'master' eddedb6bcc 
Resolve "EM_napari"

Closes #303

See merge request Pmodules/buildblocks!470
1.9.9 for merlin7 6373496851
Merge branch '304-em_cryolo' into 'master' d41f2d8241 
Resolve "EM_cryolo"

Closes #304

See merge request Pmodules/buildblocks!471
new version 5.0.0 on merlin7 8e08282bb9
Merge branch '305-imod-merlin7' into 'master' f7fd7dd3c0 
Resolve "IMOD-merlin7"

Closes #305

See merge request Pmodules/buildblocks!472
add topaz merlin7 51547afd76
Merge branch '306-topaz-module' into 'master' 70f7d0283b 
Resolve "topaz module"

Closes #306

See merge request Pmodules/buildblocks!473
new versoin 1.17.0 and Merlin7 14ad23e527
Merge branch '307-peet_1-17-0_merlin7' into 'master' 65eafc744d 
Resolve "PEET_1.17.0_merlin7"

Closes #307

See merge request Pmodules/buildblocks!474
versoin 2.99.66 merlin7 0fe0086db3
Merge branch '308-eman_2-99-66' into 'master' 14446e3f8e 
Resolve "eman_2.99.66"

Closes #308

See merge request Pmodules/buildblocks!475
new DeepEMhancer merlin7 51066a5431
Merge branch '309-deepemhancer-merlin7' into 'master' d0c86bafc6 
Resolve "deepEMhancer merlin7"

Closes #309

See merge request Pmodules/buildblocks!476
Merge branch 'alps_gcc_8.5.0' into 'master' 422d275ab9 
Add gcc 8.5.0 for ALPS

See merge request Pmodules/buildblocks!468
Openmpi update e57683abde
Merge branch 'openmpi_update' into 'master' c80cc5bb97 
Openmpi update

Closes #296, #298, and #299

See merge request Pmodules/buildblocks!465
relion5.0.0 on merlin7 a827e8e33d
delete swan file a23cb82fe4
Merge branch '289-relion5-0-2beta' into 'master' 2a619f79e4 
Resolve "relion5.0.0"

Closes #289

See merge request Pmodules/buildblocks!478
Add files/config.yaml 4bc1213de4
Merge branch 'ansys2024r2' into 'master' 404d3fd263 
Add files/config.yaml

See merge request Pmodules/buildblocks!479
cuda: new versions and YAML config 20f9945dbb
Merge branch '286-cuda-yaml-config-and-install-on-gh' into 'master' ed0b200a79 
Resolve "cuda: YAML config and install on GH"

Closes #286

See merge request Pmodules/buildblocks!451
add relion 5 stable with performance flags 42a6bd0bf8
Merge branch 'relion_perf' into 'master' 18504c9a04 
add relion 5 stable with performance flags

See merge request Pmodules/buildblocks!482
ADD: first visit draft dc2fab8546
ADD: final visit build script f3d8509830
FIX: module descrition and rm old variant file 360bb13e4e
move anaconda_2024.08 to stable 33d05777ad
Merge branch 'anaconda_2024.08_stable' into 'master' bd82295556 
move anaconda_2024.08 to stable

See merge request Pmodules/buildblocks!485
add version fpart 1.7.0 5bcb149bb4
fix modulefiles whatis message (no quotes) 1fe3d23279
Merge branch 'add_fpart' into 'master' f996f02c41 
add version fpart 1.7.0

See merge request Pmodules/buildblocks!486
VSCode build-block added 3e92d0cfa4
SHA256 sum added b3b65f88d9
old versions added to YAML config 43d425a7c3
Merge branch '312-vscode-build-script' into 'master' b53cab1e97 
Resolve "VSCode build-script"

Closes #312

See merge request Pmodules/buildblocks!487
gnuplot: legacy build script removed ccef6c571a
Merge branch '313-gnuplot-update-release-stages' into 'master' b2c7f4f471 
Resolve "gnuplot: update release stages"

Closes #313

See merge request Pmodules/buildblocks!489
gcc: use dedicated modulefile for Merlin7 113d296b50
Merge branch '285-gcc-fix-build-block-for-gracehopper' into 'master' c8086a536a 
gcc: use dedicated modulefile for Merlin7

Closes #285

See merge request Pmodules/buildblocks!490
curl: new module added 75cf0f446a
Merge branch '302-curl-new-pmodule' into 'master' 276fa6b80a 
Resolve "curl: new Pmodule"

Closes #302

See merge request Pmodules/buildblocks!469
patchelf: release stage changed to stable 36876af888
Merge branch '287-patchelf-yam-config' into 'master' f192f0b52e 
Resolve "patchelf: YAM config"

Closes #287

See merge request Pmodules/buildblocks!452
Python: updated including dependencies 1996b245c3
xz/5.8.0: release stage changed to stable 951cc09b0e
Python: release stages of new versions changed to stable 1c82a7a7b9
Merge branch '311-python-update-review' into 'master' c1fd3e51e9 
Resolve "Python: update/review"

Closes #311

See merge request Pmodules/buildblocks!481
ruby and ruby-install added d6f6c561d6
asciidoctor added b8f23dede3
perl: YAML config file added ca60ced542
perl: build script updated c9f35ef176
git: new versions added df6cc05a4a
Merge branch 'master' into '301-git-build-modules-for-newer-version' 9b63982e5e 
# Conflicts:
#   Programming/perl/files/config.yaml
perl: version 5.40.1 added to config efff045186
Merge branch '301-git-build-modules-for-newer-version' into 'master' bdfbe29e9e 
Resolve "git: build modules for newer version"

Closes #301

See merge request Pmodules/buildblocks!467
restic: new module e9b822868a
Merge branch '278-restic-module' into 'master' 623aec1f85 
Resolve "restic module"

Closes #278

See merge request Pmodules/buildblocks!440
neovim: new module added cc2e188e56
neovim: unsued files removed 2f6672d215
Merge branch '245-nvim-new-module' into 'master' 9b7f5dc4eb 
Resolve "nvim: new module"

Closes #245

See merge request Pmodules/buildblocks!361
Merge branch 'master' into awscli 0663d3ff5a
awscli: new version and YAM config 162a833ac4
awscli: new version and YAM config e0d44d07ea
Merge branch 'awscli' into 'master' 4432d6963b 
Awscli

Closes #258

See merge request Pmodules/buildblocks!382
visit: configure build functions in YAML config file 28641a2c41
visit: release stage changed to stable 5898e6a738
Merge branch 'add_visit' into 'master' 9e54b766b5 
Add visit

See merge request Pmodules/buildblocks!483
ncurses: module added 310b15e779
Merge branch '252-ncurses-module' into 'master' cd84696f86 
Resolve "ncurses module"

Closes #252

See merge request Pmodules/buildblocks!371
Merge branch 'master' into arpack-ng 3d3aa33db6
arpack-ng: YAML config and rel.stage changed to stable aa07746d88
arpack-ng: YAML config and rel.stage changed to stable 54dc3ff067
Merge branch 'arpack-ng' into 'master' f3fd5bafe8 
ADD: Arpack-ng

See merge request Pmodules/buildblocks!419
clang: versions 16.0.6 and 20.1.5 added 51fb9ba8cd
gcc: release stages changed to stable 950c3fafd5
Merge branch '314-clang-add-new-versions' into 'master' 937d5b9896 
Resolve "clang: add new versions"

Closes #314

See merge request Pmodules/buildblocks!491
Merge branch 'master' into geant4 e34ce19757
geant4: version 11.2.1 added and build-block reviewed c15706a031
Merge branch 'geant4' into 'master' a4cffcd702 
ADD: config.yaml for clhep and geant4

See merge request Pmodules/buildblocks!438
OPAL/2024.1.0: version added and YAML config bc871ae3ee
Merge branch '316-opal-yaml-config-and-version-2024-1' into 'master' 836acd396e 
Resolve "OPAL: YAML config and version 2024.1"

Closes #316

See merge request Pmodules/buildblocks!493
gdb/16.3: added 180ebae32c
gdb/binutils: hash sums added dee3f8fec2
Merge branch '315-gdb-add-new-version' into 'master' e1c95d3b5e 
gdb/16.3: added

Closes #315

See merge request Pmodules/buildblocks!494
elegant/2025.2.0: new version f05ded7fe5
Merge branch '318-build-module-for-elegant-2025-2-0' into 'master' f159f9f59e 
Resolve "build module for Elegant 2025.2.0"

Closes #318

See merge request Pmodules/buildblocks!503
Jupyterhub 5 f7d7989e9c
Merge branch 'jupyterhub-5' into 'master' 75e3b6a519 
Jupyterhub 5

See merge request Pmodules/buildblocks!505
Remove oss libfabric/1.22.0 in favor of Cray. Update OpenMPI modules with new libfbric 737be54866
Merge branch 'cray_libfabric' into 'master' 289c636e32 
Remove oss libfabric/1.22.0 in favor of Cray. Update OpenMPI modules with new libfbric

Closes #319

See merge request Pmodules/buildblocks!480
MPICH CPU and GPU variants f8dc0f4c1e
Merge branch 'mpich_merlin7' into 'master' d0e5b62518 
MPICH CPU and GPU variants

Closes #300

See merge request Pmodules/buildblocks!466
GAMS 50.3.0 and updated to yaml 976a8219ab
Merge branch 'gams' into 'master' f0eaecf647 
GAMS 50.3.0 and updated to yaml

Closes #322

See merge request Pmodules/buildblocks!510
Gams 9d514ad76a
Merge branch 'gams' into 'master' 9d2d45ca53 
Gams

See merge request Pmodules/buildblocks!511
Mpich intelcc 330e10223a
Merge branch 'mpich_intelcc' into 'master' a2a8be62e5 
Mpich intelcc

See merge request Pmodules/buildblocks!519
Ansys 2025 r2 unstable 6f32d3a146
Merge branch 'Ansys_2025R2_unstable' into 'master' 41f896b927 
Ansys 2025 r2 unstable

See merge request Pmodules/buildblocks!520
WIP: OpenMPI v5.0.8 unstable e0bd378c3d
Merge branch 'openmpi_508' into 'master' 720b81915a 
WIP: OpenMPI v5.0.8 unstable

See merge request Pmodules/buildblocks!523
Release datacatalog 2.2.2 and 3.0.0-alpha7 9271578244
Merge branch 'datacatalog' into 'master' 417bab1e90 
Release datacatalog 2.2.2 and 3.0.0-alpha7

See merge request Pmodules/buildblocks!527
Add Rosetta v3.15 for x86 and ARM 7d99027500
agosti_j closed this pull request 2025-10-17 08:48:35 +02:00
agosti_j deleted branch Rosetta_3.15 2025-10-17 08:49:44 +02:00

Pull request closed

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Reference: mx/MX_Pmodule#15