Add Gautomatch buildblock
No new versions were installed, but this documents the build process and updates the modulefile.
This commit is contained in:
6
EM/Gautomatch/Gautomatch
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6
EM/Gautomatch/Gautomatch
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#!/bin/sh
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# Wrapper for Gautomatch on merlin
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module purge
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module use EM
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module load cuda/8.0.44 Gautomatch/0.56
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exec Gautomatch_v0.56_sm61_cu8.0 "$@"
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EM/Gautomatch/README
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EM/Gautomatch/README
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# Gautomatch
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## Installation
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1. Download binaries from https://www2.mrc-lmb.cam.ac.uk/research/locally-developed-software/zhang-software/
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2. Update files/variants
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3. Run `./build <version>` to create directories
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4. Move all executables to /opt/psi/EM/Gautomatch/$VERSION/bin
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5. Create wrapper script at /opt/psi/EM/Gautomatch/$VERSION/bin/Gautomatch based on ./Gautomatch
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6. Fix permissions: chmod 755 /opt/psi/EM/Gautomatch/$VERSION/bin/*
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EM/Gautomatch/build
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EM/Gautomatch/build
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#!/usr/bin/env modbuild
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# Binary distribution with manual installation. See README.md
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pbuild::add_to_group 'EM'
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pbuild::prep() {
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:
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}
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pbuild::configure() {
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:
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}
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pbuild::compile() {
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:
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}
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pbuild::install() {
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:
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}
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2
EM/Gautomatch/files/variants
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EM/Gautomatch/files/variants
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Gautomatch/0.53 stable
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Gautomatch/0.56 stable
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14
EM/Gautomatch/modulefile
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EM/Gautomatch/modulefile
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#%Module1.0
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module-whatis "Fully automatic accurate, convenient and extremely fast particle picking for EM"
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module-url "https://www2.mrc-lmb.cam.ac.uk/research/locally-developed-software/zhang-software/"
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module-license "free"
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module-maintainer "Spencer Bliven <spencer.bliven@psi.ch>"
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module-help "
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Citation: Kai Zhang. Unpublished
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The `Gautomatch` script in this module includes the correct CUDA dependency. Other
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executables need CUDA loaded separately.
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"
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