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Update README.md

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gsell
2020-06-16 17:03:08 +02:00
parent f02e5c63df
commit 0a5ffcfe30
1 changed files with 28 additions and 30 deletions
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MPI/elegant/README.md
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@@ -14,28 +14,17 @@ The instructions to build from source are almost at the end of the page.
Instructions to build [`Pelegant`](https://ops.aps.anl.gov/publish/Pelegant_manual/node2.html)
## Getting the software and required configuration files
## Getting required configuration files
**file defining constants and some functions**
* [file defining constants and some functions](https://ops.aps.anl.gov/cgi-bin/oagLog4.cgi?name=defns.rpn)
* [EPICS base configuration](http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=epics.base.configure.tar.gz)
* [EPICS extensions configuration](http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=epics.extensions.configure.tar.gz)
* [Configuration files for elegant, spiffe, genesis, and shower](http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=oag.apps.configure.tar.gz)
https://ops.aps.anl.gov/cgi-bin/oagLog4.cgi?name=defns.rpn
## SDDS and Elegant sources
**Configuration files for EPICS build system (base and extensions)**
* http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=epics.base.configure.tar.gz
* http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=epics.extensions.configure.tar.gz
**Configuration files for elegant, spiffe, genesis, and shower**
* http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=oag.apps.configure.tar.gz
**SDDS source**
* http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=SDDS.3.6.1.tar.gz
**elegant source**
* http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=elegant.34.2.0.tar.gz
* [SDDS 4.3.1 source](http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=SDDS.4.3.0.tar.gz)
* [Elegant 2020.2.0 source](http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=elegant.2020.2.0.tar.gz)
## Required Modules
@@ -44,17 +33,14 @@ module load gcc/8.4.0 gsl/2.6 OpenBLAS/0.3.10 mpich/3.2.1
```
or
```
module load gcc/8.4.0 gsl/2.6 OpenBLAS/0.3.10 openmpi/3.1.6
module load gcc/8.4.0 gsl/2.6 lapack/3.9.0 openmpi/3.1.6
```
## Set used versions
```
SDDS_VERSION=4.3
ELEGANT_VERSION=2020.2.0
```
## Setup Environment
```
SDDS_VERSION=4.3
ELEGANT_VERSION=2020.2.0
source "${PMODULES_ROOT}/config/modbuild.conf"
DOWNLOAD_DIR="${PMODULES_DISTFILESDIR}/elegant"
PREFIX="${PMODULES_ROOT}/MPI/elegant/${ELEGANT_VERSION}/${MPI}/${MPI_VERSION}/${COMPILER}/${COMPILER_VERSION}"
@@ -64,15 +50,13 @@ export HOST_ARCH=linux-x86_64
export EPICS_HOST_ARCH=linux-x86_64
export RPN_DEFNS="${PREFIX}/RPN_DEFNS/defns.rpn"
export PERLLIB="${PREFIX}/lib/perl"
```
```
ARGS=()
ARGS+=( "GNU_BIN=$GCC_DIR/bin" )
ARGS+=( "LD=/usr/bin/ld" )
ARGS+=( "AR=/usr/bin/ar -rc" )
ARGS+=( "RANLIB=/usr/bin/ranlib" )
ARGS+=( "EPICS_BASE=${PREFIX}" )
ARGS+=( "EPICS_BASE=${EPICS_BASE}" )
ARGS+=( "INSTALL_LOCATION=${PREFIX}" )
ARGS+=( "INSTALL_LIB=${PREFIX}/lib" )
ARGS+=( "INSTALL_SHRLIB=${PREFIX}/lib" )
@@ -113,17 +97,31 @@ make -e "${ARGS[@]}"
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/SDDS.${SDDS_VERSION}.tar.gz"
cd "${PREFIX}/epics/extensions/src/SDDS/"
sed -i -e "s/\( sddspseudoinverse_SYS_LIB.*\)/\1 gfortran/" SDDSaps/pseudoInverse/Makefile
sed -i -e "s/\( sddsmatrixop_SYS_LIBS.*\)/\1 gfortran/" SDDSaps/pseudoInverse/Makefile
make -e "${ARGS[@]}" -C png && \
make -e "${ARGS[@]}"
make -e "${ARGS[@]}" -C SDDSlib clean
make "${ARGS[@]}" MPI=1 -C SDDSlib
make -e "${ARGS[@]}" -C pgapack && \
make -e "${ARGS[@]}" -C fftpack && \
make -e "${ARGS[@]}" -C lzma && \
make -e "${ARGS[@]}" -C matlib && \
make -e "${ARGS[@]}" -C mdbcommon && \
make -e "${ARGS[@]}" -C mdblib && \
make -e "${ARGS[@]}" -C mdbmth && \
make -e "${ARGS[@]}" -C SDDSlib && \
make -e "${ARGS[@]}" -C SDDSaps/pseudoInverse OP_SYS_LDLIBS=-lgfortran
make -e "${ARGS[@]}" -C meschach && \
make -e "${ARGS[@]}" -C namelist && \
make -e "${ARGS[@]}" -C pgapack && \
make -e "${ARGS[@]}" -C rpns/code && \
make -e "${ARGS[@]}" -C SDDSlib && \
make -e "${ARGS[@]}" -C SDDSlib clean
make "${ARGS[@]}" MPI=1 -C SDDSlib
```