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gsell
2018-07-02 13:19:17 +02:00
parent d88ea6b846 31d4a0d78f
commit 58816415d1
44 changed files with 442 additions and 55 deletions
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5
Compiler/H5root/1/variants
View File

@@ -6,5 +6,6 @@ H5root/1.3.2rc4 unstable gcc/5.4.0 b:hdf5_serial/1.8.18 b:H5hut/2.0.0rc3 root/6
H5root/1.3.2rc4-1 unstable b:autoconf/2.69 b:automake/1.14 b:libtool/2.4.2 gcc/5.4.0 b:hdf5_serial/1.8.18 b:H5hut/2.0.0rc3 root/6.08.02 boost/1.62.0 gsl/2.2.1
H5root/1.3.2rc5 unstable b:autoconf/2.69 b:automake/1.14 b:libtool/2.4.2 gcc/5.4.0 b:hdf5_serial/1.8.18 b:H5hut/2.0.0rc3 root/6.08.02 boost/1.62.0 gsl/2.2.1
H5root/1.3.2rc5-1 unstable b:autoconf/2.69 b:automake/1.14 b:libtool/2.4.2 gcc/5.4.0 b:hdf5_serial/1.8.18 b:H5hut/2.0.0rc3 root/6.08.02 boost/1.62.0 gsl/2.2.1
H5root/1.3.2 unstable b:autoconf/2.69 b:automake/1.14 b:libtool/2.4.2 gcc/5.4.0 b:hdf5_serial/1.8.18 b:H5hut/2.0.0rc3 root/6.08.02 boost/1.62.0 gsl/2.2.1
H5root/1.3.4 unstable b:autoconf/2.69 b:automake/1.14 b:libtool/2.4.2 gcc/5.4.0 b:hdf5_serial/1.8.18 b:H5hut/2.0.0rc3 root/6.08.02 boost/1.62.0 gsl/2.2.1
H5root/1.3.2 stable b:autoconf/2.69 b:automake/1.14 b:libtool/2.4.2 gcc/5.4.0 b:hdf5_serial/1.8.18 b:H5hut/2.0.0rc3 root/6.08.02 boost/1.62.0 gsl/2.2.1
H5root/1.3.4 stable b:autoconf/2.69 b:automake/1.14 b:libtool/2.4.2 gcc/5.4.0 b:hdf5_serial/1.8.18 b:H5hut/2.0.0rc3 root/6.08.02 boost/1.62.0 gsl/2.2.1
H5root/1.3.4 unstable b:autoconf/2.69 b:automake/1.14 b:libtool/2.4.2 gcc/7.3.0 b:hdf5_serial/1.10.1 b:H5hut/2.0.0rc4 root/6.12.06 boost/1.66.0 gsl/2.4

2
Compiler/OpenBLAS/0/variants
View File

@@ -12,6 +12,8 @@ OpenBLAS/0.2.19 stable gcc/5.4.0
OpenBLAS/0.2.19 stable gcc/6.2.0
OpenBLAS/0.2.19 stable gcc/6.3.0
OpenBLAS/0.2.20 stable gcc/5.5.0
OpenBLAS/0.2.20 stable gcc/6.4.0
OpenBLAS/0.2.20 stable gcc/7.3.0
OpenBLAS/0.2.20 stable clang-macos/9.0.0
OpenBLAS/0.2.20 stable intel/17.4

3
Compiler/atlas/3/variants
View File

@@ -2,4 +2,7 @@ atlas/3.10.3 unstable gcc/4.8.5
atlas/3.10.2 deprecated gcc/4.9.2
atlas/3.10.3 unstable gcc/4.9.4
atlas/3.10.3 unstable gcc/5.4.0
atlas/3.10.3 unstable gcc/5.5.0
atlas/3.10.3 unstable gcc/6.2.0
atlas/3.10.3 unstable gcc/6.4.0
atlas/3.10.3 unstable gcc/7.3.0

20
Compiler/boost/1/variants
View File

@@ -18,11 +18,19 @@ boost/1.62.0 stable gcc/4.8.5 Python/2.7.12
boost/1.62.0 stable gcc/4.9.4 Python/2.7.12
boost/1.62.0 stable gcc/5.4.0 Python/2.7.12
boost/1.62.0 stable gcc/6.2.0 Python/2.7.12
boost/1.62.0 unstable gcc/6.3.0 Python/2.7.12
boost/1.62.0 unstable gcc/7.1.0 Python/2.7.12
boost/1.62.0 stable gcc/6.3.0 Python/2.7.12
boost/1.62.0 stable gcc/7.1.0 Python/2.7.12
boost/1.63.0 stable gcc/6.3.0 Python/2.7.12
boost/1.64.0 unstable gcc/5.4.0 Python/2.7.12
boost/1.64.0 stable gcc/5.4.0 Python/2.7.12
boost/1.66.0 unstable gcc/7.3.0 b:Python/2.7.12
boost/1.66.0 unstable clang-macos/9.0.0 b:Python/2.7.12
boost/1.66.0 unstable intel/17.4 b:Python/2.7.12
boost/1.66.0 stable gcc/5.5.0 b:Python/2.7.12
boost/1.66.0 stable gcc/6.4.0 b:Python/2.7.12
boost/1.66.0 stable gcc/7.3.0 b:Python/2.7.12
boost/1.66.0 stable clang-macos/9.0.0 b:Python/2.7.12
boost/1.66.0 stable intel/17.4 b:Python/2.7.12
boost/1.67.0 stable gcc/5.5.0 b:Python/2.7.14
boost/1.67.0 stable gcc/6.4.0 b:Python/2.7.14
boost/1.67.0 stable gcc/7.3.0 b:Python/2.7.14
boost/1.67.0 stable clang-macos/9.0.0 b:Python/2.7.14
boost/1.67.0 stable intel/17.4 b:Python/2.7.14

18
Compiler/gsl/2/variants
View File

@@ -1,9 +1,11 @@
gsl/2.2.1 stable gcc/4.8.5
gsl/2.2.1 stable gcc/4.9.4
gsl/2.2.1 stable gcc/5.4.0
gsl/2.2.1 stable gcc/6.2.0
gsl/2.2.1 stable gcc/6.3.0
gsl/2.2.1 stable gcc/4.8.5
gsl/2.2.1 stable gcc/4.9.4
gsl/2.2.1 stable gcc/5.4.0
gsl/2.2.1 stable gcc/6.2.0
gsl/2.2.1 stable gcc/6.3.0
gsl/2.4.0 stable gcc/7.3.0
gsl/2.4.0 stable clang-macos/9.0.0
gsl/2.4.0 stable intel/17.4
gsl/2.4 stable gcc/5.5.0
gsl/2.4 stable gcc/6.4.0
gsl/2.4 stable gcc/7.3.0
gsl/2.4 stable clang-macos/9.0.0
gsl/2.4 stable intel/17.4

3
Compiler/gtest/1/variants
View File

@@ -1,2 +1,5 @@
gtest/1.7.0 stable b:cmake b:gcc/5.4.0
gtest/1.7.0 stable b:cmake b:gcc/5.5.0
gtest/1.7.0 stable b:cmake b:gcc/6.4.0
gtest/1.7.0 stable b:cmake b:gcc/7.3.0
gtest/1.7.0 stable b:cmake b:clang-macos/9.0.0

22
Compiler/hdf5_serial/1/variants.Linux
View File

@@ -32,9 +32,12 @@ hdf5_serial/1.8.17 stable gcc/6.2.0
hdf5_serial/1.8.18 stable gcc/4.8.5
hdf5_serial/1.8.18 stable gcc/4.9.4
hdf5_serial/1.8.18 stable gcc/5.4.0
hdf5_serial/1.8.18 stable gcc/5.5.0
hdf5_serial/1.8.18 stable gcc/6.2.0
hdf5_serial/1.8.18 stable gcc/6.3.0
hdf5_serial/1.8.18 stable gcc/6.4.0
hdf5_serial/1.8.18 stable gcc/7.2.0
hdf5_serial/1.8.18 stable gcc/7.3.0
hdf5_serial/1.8.19 stable gcc/4.8.5
hdf5_serial/1.8.19 stable gcc/4.9.4
@@ -42,15 +45,28 @@ hdf5_serial/1.8.19 stable gcc/5.4.0
hdf5_serial/1.8.19 stable gcc/6.3.0
hdf5_serial/1.8.19 stable gcc/7.2.0
hdf5_serial/1.8.20 stable gcc/5.5.0
hdf5_serial/1.8.20 stable gcc/6.4.0
hdf5_serial/1.8.20 stable gcc/7.3.0
hdf5_serial/1.10.1 stable gcc/4.8.5
hdf5_serial/1.10.1 stable gcc/4.9.4
hdf5_serial/1.10.1 stable gcc/5.4.0
hdf5_serial/1.10.1 stable gcc/5.5.0
hdf5_serial/1.10.1 stable gcc/6.3.0
hdf5_serial/1.10.1 stable gcc/6.4.0
hdf5_serial/1.10.1 stable gcc/7.2.0
hdf5_serial/1.10.1 stable gcc/7.3.0
hdf5_serial/1.10.1 unstable intel/17.1
hdf5_serial/1.10.1 stable intel/17.1
hdf5_serial/1.10.1 stable intel/17.4
hdf5_serial/1.10.1 unstable pgi/17.3
hdf5_serial/1.10.1 unstable pgi/17.7
hdf5_serial/1.10.1 stable pgi/17.3
hdf5_serial/1.10.1 stable pgi/17.7
hdf5_serial/1.10.2 stable gcc/5.5.0
hdf5_serial/1.10.2 stable gcc/6.4.0
hdf5_serial/1.10.2 stable gcc/7.3.0
hdf5_serial/1.10.2 stable intel/18.2

2
Compiler/hdf5_serial/build
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env modbuild
SOURCE_URL="https://support.hdfgroup.org/ftp/HDF5/current${V_MAJOR}${V_MINOR}/src/hdf5-$V.tar.bz2"
SOURCE_URL="https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-${V_MAJOR}.${V_MINOR}/hdf5-$V/src/hdf5-$V.tar.bz2"
pbuild::configure() {
test "$(basename "$CPP")" = "pgprepro" && {

3
Compiler/mpich/3/variants
View File

@@ -1,3 +1,4 @@
mpich/3.2.1 stable gcc/5.5.0
mpich/3.2.1 stable gcc/6.4.0
mpich/3.2.1 stable gcc/7.3.0
mpich/3.2.1 unstable intel/17.4
mpich/3.2.1 stable intel/17.4

2
Compiler/openmpi/1.10/variants.Linux
View File

@@ -22,8 +22,10 @@ openmpi/1.10.4 stable gcc/6.3.0
openmpi/1.10.7 stable gcc/4.8.5 b:cuda/8.0.44
openmpi/1.10.7 stable gcc/4.9.4 b:cuda/8.0.44
openmpi/1.10.7 stable gcc/5.4.0 b:cuda/8.0.44
openmpi/1.10.7 stable gcc/5.5.0
openmpi/1.10.7 stable gcc/6.2.0
openmpi/1.10.7 stable gcc/6.3.0
openmpi/1.10.7 stable gcc/6.4.0
openmpi/1.10.7 stable gcc/7.2.0
openmpi/1.10.7 stable gcc/7.3.0

13
Compiler/openmpi/2.1/variants.Linux
View File

@@ -1,8 +1,15 @@
openmpi/2.1.1 stable gcc/6.4.0
openmpi/2.1.0 stable gcc/7.1.0
openmpi/2.1.1 stable gcc/7.2.0
openmpi/2.1.2 stable gcc/7.3.0
openmpi/2.1.1 stable gcc/6.4.0
openmpi/2.1.1 stable gcc/7.2.0
openmpi/2.1.1 unstable intel/17.1
openmpi/2.1.1 stable intel/17.4
openmpi/2.1.2 stable gcc/5.5.0
openmpi/2.1.2 stable gcc/6.4.0
openmpi/2.1.2 stable gcc/7.3.0
openmpi/2.1.2 stable intel/17.4
openmpi/2.1.3 stable gcc/5.5.0
openmpi/2.1.3 stable gcc/6.4.0
openmpi/2.1.3 stable gcc/7.3.0

10
Compiler/openmpi/3.0/variants.Linux
View File

@@ -1,4 +1,14 @@
openmpi/3.0.0 stable gcc/5.5.0
openmpi/3.0.0 stable gcc/6.4.0
openmpi/3.0.0 stable gcc/7.2.0
openmpi/3.0.0 stable gcc/7.3.0
openmpi/3.0.0 stable intel/17.4
openmpi/3.0.1 stable gcc/5.5.0
openmpi/3.0.1 stable gcc/6.4.0
openmpi/3.0.1 stable gcc/7.3.0
openmpi/3.0.1 stable gcc/7.3.0
openmpi/3.0.1 stable gcc/8.1.0
openpmi/3.0.1 unstable intel/18.2
openmpi/3.1.1 stable gcc/8.1.0

7
Compiler/openmpi/build
View File

@@ -16,6 +16,7 @@ pbuild::configure() {
--enable-mpi-profile \
--enable-orterun-prefix-by-default \
--enable-shared \
--enable-static \
--enable-smp-locks \
--with-sge=yes \
--with-slurm=yes \
@@ -23,6 +24,12 @@ pbuild::configure() {
|| exit 1
}
pbuild::post_install() {
if [[ -r /usr/lib64/libnuma.a ]]; then
:
fi
}
pbuild::add_to_group 'Compiler'
pbuild::set_docfiles 'AUTHORS' 'LICENSE' 'NEWS' 'README'
pbuild::make_all

10
Compiler/root/6/variants
View File

@@ -6,9 +6,11 @@ root/6.08.00 stable gcc/4.9.4 b:Python/2.7.12 b:gsl/1.16 b:cmake/3.6.3
root/6.08.00 stable gcc/5.4.0 b:Python/2.7.12 b:gsl/1.16 b:cmake/3.6.3
root/6.08.00 stable gcc/6.2.0 b:Python/2.7.12 b:gsl/1.16 b:cmake/3.6.3
root/6.08.02 unstable gcc/4.8.5 b:Python/2.7.12 b:gsl/2.2.1 b:cmake/3.6.3
root/6.08.02 unstable gcc/4.9.4 b:Python/2.7.12 b:gsl/2.2.1 b:cmake/3.6.3
root/6.08.02 unstable gcc/5.4.0 b:Python/2.7.12 b:gsl/2.2.1 b:cmake/3.6.3
root/6.08.02 unstable gcc/6.2.0 b:Python/2.7.12 b:gsl/2.2.1 b:cmake/3.6.3
root/6.08.02 stable gcc/4.8.5 b:Python/2.7.12 b:gsl/2.2.1 b:cmake/3.6.3
root/6.08.02 stable gcc/4.9.4 b:Python/2.7.12 b:gsl/2.2.1 b:cmake/3.6.3
root/6.08.02 stable gcc/5.4.0 b:Python/2.7.12 b:gsl/2.2.1 b:cmake/3.6.3
root/6.08.02 stable gcc/6.2.0 b:Python/2.7.12 b:gsl/2.2.1 b:cmake/3.6.3
root/6.12.06 unstable gcc/5.5.0 b:Python/2.7.12 b:gsl/2.4 b:cmake/3.6.3
root/6.12.06 unstable gcc/6.4.0 b:Python/2.7.12 b:gsl/2.4 b:cmake/3.6.3
root/6.12.06 unstable gcc/7.3.0 b:Python/2.7.12 b:gsl/2.4 b:cmake/3.6.3

33
Compiler/root/build
View File

@@ -14,21 +14,24 @@ Darwin )
Linux )
INSTANTCLIENT_INCLUDE_DIR='/usr/include/oracle/12.1/client64'
INSTANTCLIENT_LIBRARY_DIR='/usr/lib/oracle/12.1/client64/lib'
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libclntshcore.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libclntshcore.so.12.1" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libclntsh.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libclntsh.so.12.1" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libipc1.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libmql1.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libnnz12.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libocci.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libocci.so.12.1" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libociei.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libocijdbc12.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libons.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/liboramysql12.so" )
config_args+=" --with-oracle-incdir=${INSTANTCLIENT_INCLUDE_DIR}"
config_args+=" --with-oracle-libdir=${INSTANTCLIENT_LIBRARY_DIR}"
if [[ -e ${INSTANTCLIENT_INCLUDE_DIR} ]] && \
[[ -e ${INSTANTCLIENT_LIBRARY_DIR} ]]; then
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libclntshcore.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libclntshcore.so.12.1" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libclntsh.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libclntsh.so.12.1" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libipc1.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libmql1.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libnnz12.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libocci.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libocci.so.12.1" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libociei.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libocijdbc12.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/libons.so" )
EXTRA_LIBS+=( "${INSTANTCLIENT_LIBRARY_DIR}/liboramysql12.so" )
config_args+=" --with-oracle-incdir=${INSTANTCLIENT_INCLUDE_DIR}"
config_args+=" --with-oracle-libdir=${INSTANTCLIENT_LIBRARY_DIR}"
fi
;;
*)
;;

1
HDF5/H5hut/2/variants
View File

@@ -24,3 +24,4 @@ H5hut/2.0.0rc4 unstable clang-macos/9.0.0 openmpi/3.0.0 hdf5/1.10.1 b:automake/
H5hut/2.0.0rc4 unstable intel/17.4 openmpi/1.10.7 hdf5/1.10.1 b:automake/1.15 b:autoconf/2.69 b:libtool/2.4.6 b:Python/2.7.12 b:parmetis/4.0.3
H5hut/2.0.0rc4 unstable intel/17.4 openmpi/2.1.2 hdf5/1.10.1 b:automake/1.15 b:autoconf/2.69 b:libtool/2.4.6 b:Python/2.7.12 b:parmetis/4.0.3
H5hut/2.0.0rc4 unstable intel/17.4 openmpi/3.0.0 hdf5/1.10.1 b:automake/1.15 b:autoconf/2.69 b:libtool/2.4.6 b:Python/2.7.12 b:parmetis/4.0.3
H5hut/2.0.0rc4 unstable clang-macos/9.0.0 openmpi/3.0.0 hdf5/1.10.1 b:automake/1.15 b:autoconf/2.69 b:libtool/2.4.6 b:Python/2.7.12 b:parmetis/4.0.3

9
HDF5/H5hut/build
View File

@@ -14,12 +14,19 @@ pbuild::configure() {
if (( V_MAJOR >= 2 )); then
: config_args+=" --enable-python"
fi
case "${COMPILER}" in
"clang-macos" )
:
;;
* )
config_args+='--enable-fortran'
;;
esac
"${MODULE_SRCDIR}"/configure \
--prefix="${PREFIX}" \
--enable-parallel \
--enable-debug \
--enable-fortran \
--enable-shared \
--with-hdf5=$HDF5_PREFIX \
--with-pic \

2
Libraries/mpc/1/variants
View File

@@ -3,4 +3,4 @@ mpc/1.0.3 stable b:gmp/6.1.0 b:mpfr/3.1.4
mpc/1.0.3-1 stable b:gmp/6.1.1 b:mpfr/3.1.4
mpc/1.0.3-2 stable b:gmp/6.1.2 b:mpfr/3.1.5
mpc/1.1.0 stable b:gmp/6.1.2 b:mpfr/4.0.0
mpc/1.1.0-1 unstable b:gmp/6.1.2 b:mpfr/4.0.1
mpc/1.1.0-1 stable b:gmp/6.1.2 b:mpfr/4.0.1

3
MPI/OPAL/1.6/variants
View File

@@ -5,4 +5,5 @@ OPAL/1.6.0rc4 unstable gcc/5.4.0 openmpi/1.10.4 boost/1.62.0 hdf5/1.8.18 H5hut/2
OPAL/1.6.0rc5 unstable gcc/5.4.0 openmpi/1.10.4 boost/1.62.0 hdf5/1.8.18 H5hut/2.0.0rc3 gsl/2.2.1 trilinos/12.10.1 cuda/8.0.44 dks/1.1.2 b:cmake/3.6.3 b:OpenBLAS/0.2.19
OPAL/1.6.0rc6 unstable gcc/5.4.0 openmpi/1.10.4 boost/1.62.0 hdf5/1.8.18 H5hut/2.0.0rc3 gsl/2.2.1 trilinos/12.10.1 cuda/8.0.44 dks/1.1.2 b:cmake/3.6.3 b:OpenBLAS/0.2.19
OPAL/1.6.0 stable gcc/5.4.0 openmpi/1.10.4 boost/1.62.0 hdf5/1.8.18 H5hut/2.0.0rc3 gsl/2.2.1 trilinos/12.10.1 cuda/8.0.44 dks/1.1.2 b:cmake/3.6.3 b:OpenBLAS/0.2.19
OPAL/1.6.1 unstable gcc/5.4.0 openmpi/1.10.4 boost/1.62.0 hdf5/1.8.18 H5hut/2.0.0rc3 gsl/2.2.1 trilinos/12.10.1 cuda/8.0.44 dks/1.1.2 b:cmake/3.6.3 b:OpenBLAS/0.2.19
OPAL/1.6.1 stable gcc/5.4.0 openmpi/1.10.4 boost/1.62.0 hdf5/1.8.18 H5hut/2.0.0rc3 gsl/2.2.1 trilinos/12.10.1 cuda/8.0.44 dks/1.1.2 b:cmake/3.6.3 b:OpenBLAS/0.2.19
OPAL/1.6.2 stable gcc/5.4.0 openmpi/1.10.4 boost/1.62.0 hdf5/1.8.18 H5hut/2.0.0rc3 gsl/2.2.1 trilinos/12.10.1 cuda/8.0.44 dks/1.1.2 b:cmake/3.6.3 b:OpenBLAS/0.2.19

1
MPI/OPAL/2.0/variants Normal file
View File

@@ -0,0 +1 @@
OPAL/2.0.0rc2 unstable gcc/7.3.0 openmpi/3.0.0 boost/1.66.0 hdf5/1.10.1 H5hut/2.0.0rc4 gsl/2.4 trilinos/12.12.1 b:cmake/3.9.6 b:OpenBLAS/0.2.20

8
MPI/OPAL/build
View File

@@ -1,6 +1,6 @@
#!/usr/bin/env modbuild
SOURCE_URL='http://amas.web.psi.ch/Downloads/OPAL/OPAL-1.6.0rc6.tar.bz2'
SOURCE_URL="http://amas.web.psi.ch/Downloads/$P/src/$P-$V.tar.bz2"
config_args=()
@@ -9,7 +9,9 @@ Darwin )
:
;;
Linux )
config_args+=( '-DENABLE_DKS=ON' )
if (( V_MAJOR < 2)); then
config_args+=( '-DENABLE_DKS=ON' )
fi
;;
esac
@@ -24,6 +26,6 @@ pbuild::configure() {
}
pbuild::add_to_group 'MPI'
pbuild::set_supported_compilers 'gcc/4.7' 'gcc/4.8' 'gcc/4.9' 'gcc/5.4'
pbuild::set_supported_compilers 'gcc/5.4.0' 'gcc/5.5.0' 'gcc/6.4.0' 'gcc/7.3.0'
pbuild::make_all

139
MPI/elegant/README.md Normal file
View File

@@ -0,0 +1,139 @@
# How to compile (P)elegant
## Official build instructions
>
Go down for PSI build instructions!
Instructions to setup `epics/base`, `epics/extensions` compile `SDDS` and `elegant`. The instructions to build from source are almost at the end of the page:
https://www.aps.anl.gov/Accelerator-Operations-Physics/Software/installationGuide_Linux
Instructions to build `Pelegant`:
https://ops.aps.anl.gov/publish/Pelegant_manual/node2.html
## Get the software
**Main page**
* https://www1.aps.anl.gov/Accelerator-Operations-Physics/Software
**Configuration files for EPICS build system (base and extensions)**
* http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=epics.base.configure.tar.gz
* http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=epics.extensions.configure.tar.gz
**Configure files for elegant, spiffe, genesis, and shower**
* http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=oag.apps.configure.tar.gz
**SDDS source**
* http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=SDDS.3.6.1.tar.gz
**elegant source**
* http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/cgi-bin/oagLog4.cgi?name=elegant.34.2.0.tar.gz
## Required Modules
```
module load gcc/7.3.0 gsl/2.4 OpenBLAS/0.2.20 mpich/3.2.1
```
## Set used versions
```
SDDS_VERSION=3.6.1
ELEGANT_VERSION=34.2.0
```
## Setup Environment
```
source "${PMODULES_ROOT}/config/modbuild.conf"
DOWNLOAD_DIR="${PMODULES_DISTFILESDIR}/elegant"
PREFIX="${PMODULES_ROOT}/MPI/elegant/${ELEGANT_VERSION}/${MPI}/${MPI_VERSION}/${COMPILER}/${COMPILER_VERSION}"
export EPICS_BASE="${PREFIX}/epics/base"
export HOST_ARCH=linux-x86_64
export EPICS_HOST_ARCH=linux-x86_64
export RPN_DEFNS="${PREFIX}/RPN_DEFNS/defns.rpn"
export PERLLIB="${PREFIX}/lib/perl"
```
```
ARGS=()
ARGS+=( "GNU_BIN=$GCC_DIR/bin" )
ARGS+=( "LD=/usr/bin/ld" )
ARGS+=( "AR=/usr/bin/ar -rc" )
ARGS+=( "RANLIB=/usr/bin/ranlib" )
ARGS+=( "EPICS_BASE=${PREFIX}" )
ARGS+=( "INSTALL_LOCATION=${PREFIX}" )
ARGS+=( "INSTALL_LIB=${PREFIX}/lib" )
ARGS+=( "INSTALL_SHRLIB=${PREFIX}/lib" )
ARGS+=( "INSTALL_TCLLIB=${PREFIX}/lib" )
ARGS+=( "INSTALL_BIN=${PREFIX}/bin" )
ARGS+=( "SYSGSL=1")
```
## Prepare base build environment
EPICS base configuration
```
mkdir -p "${PREFIX}"
mkdir -p "${RPN_DEFNS%/*}"
cp "${DOWNLOAD_DIR}/defns.rpn" "${RPN_DEFNS}"
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/epics.base.configure.tar.gz"
cd epics/base
make -e "${ARGS[@]}"
```
## Unpack EPICS extensions and OAG apps configuration
```
ARGS+=( "TOOLS=${PREFIX}/bin")
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/epics.extensions.configure.tar.gz"
tar xvf "${DOWNLOAD_DIR}/oag.apps.configure.tar.gz"
cd "${PREFIX}/oag/apps/configure"
sed -i "s/clean::/clean:/" RULES_PYTHON
make -e "${ARGS[@]}"
```
>
You have to fix the `clean::` target in `${PREFIX}/oag/apps/configure/PYTHON_RULES`
## Build required tools and libraries from SDDS
```
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/SDDS.${SDDS_VERSION}.tar.gz"
cd "${PREFIX}/epics/extensions/src/SDDS/"
make -e "${ARGS[@]}" -C fftpack && \
make -e "${ARGS[@]}" -C lzma && \
make -e "${ARGS[@]}" -C matlib && \
make -e "${ARGS[@]}" -C mdbcommon && \
make -e "${ARGS[@]}" -C mdblib && \
make -e "${ARGS[@]}" -C mdbmth && \
make -e "${ARGS[@]}" -C meschach && \
make -e "${ARGS[@]}" -C namelist && \
make -e "${ARGS[@]}" -C pgapack && \
make -e "${ARGS[@]}" -C rpns/code && \
make -e "${ARGS[@]}" -C SDDSlib && \
make -e "${ARGS[@]}" -C SDDSlib clean
make "${ARGS[@]}" MPI=1 -C SDDSlib
```
## Compile (P)elegant
```
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/elegant.${ELEGANT_VERSION}.tar.gz"
PATH+=":${PREFIX}/bin"
cd "${PREFIX}/oag/apps/src/elegant"
make -e "${ARGS[@]}"
make clean
make "${ARGS[@]}" Pelegant
```

2
MPI/elegant/modulefile
View File

@@ -1,6 +1,6 @@
#%Module1.0
module-whatis "an accelerator modeling code th"
module-whatis "an accelerator modeling code"
module-url "http://www.aps.anl.gov/Accelerator_Systems_Division/Accelerator_Operations_Physics/elegant.html"
module-license "See: http://www.aps.anl.gov/epics/license/index.php"
module-maintainer "Achim Gsell <achim.gsell@psi.ch>"

1
MPI/trilinos/12/variants.Darwin
View File

@@ -12,3 +12,4 @@ trilinos/12.10.1 unstable gcc/6.2.0 openmpi/1.10.4 b:cmake/3.6.3 b:OpenBLAS/0.2.
trilinos/12.12.1 unstable gcc/7.3.0 openmpi/1.10.7 hdf5/1.10.1 b:cmake/3.6.3 b:OpenBLAS/0.2.20 b:parmetis/4.0.3
trilinos/12.12.1 unstable gcc/7.3.0 openmpi/2.1.2 hdf5/1.10.1 b:cmake/3.6.3 b:OpenBLAS/0.2.20 b:parmetis/4.0.3
trilinos/12.12.1 unstable gcc/7.3.0 openmpi/3.0.0 hdf5/1.10.1 b:cmake/3.6.3 b:OpenBLAS/0.2.20 b:parmetis/4.0.3
trilinos/12.12.1 unstable clang-macos/9.0.0 openmpi/3.0.0 hdf5/1.10.1 b:cmake/3.9.6 b:OpenBLAS/0.2.20 b:parmetis/4.0.3

1
Programming/Python/2/variants
View File

@@ -1,2 +1,3 @@
Python/2.7.11 stable openssl/1.0.2j Tcl/8.6.4 Tk/8.6.4
Python/2.7.12 stable openssl/1.0.2j Tcl/8.6.4 Tk/8.6.4
Python/2.7.14 stable openssl/1.0.2o Tcl/8.6.4 Tk/8.6.4

4
Programming/Python/build
View File

@@ -28,10 +28,10 @@ pbuild::post_install() {
pip${V_MAJOR} install scipy
pip${V_MAJOR} install matplotlib
pip${V_MAJOR} install ipython
pip${V_MAJOR} install pandas
#pip${V_MAJOR} install pandas
pip${V_MAJOR} install sympy
pip${V_MAJOR} install nose
pip${V_MAJOR} install mpi4py
#pip${V_MAJOR} install mpi4py
}
pbuild::add_to_group 'Programming'

1
Programming/automake/1/variants
View File

@@ -1,2 +1,3 @@
automake/1.14 stable m4/1.4.17 autoconf/2.69
automake/1.15 stable m4/1.4.17 autoconf/2.69
automake/1.16 stable m4/1.4.17 autoconf/2.69

1
Programming/gcc/5/variants
View File

@@ -2,4 +2,5 @@ gcc/5.1.0 deprecated b:gmp/5.1.1 b:mpfr/3.1.2 b:mpc/1.0.2
gcc/5.2.0 deprecated b:gmp/6.0.0 b:mpfr/3.1.3 b:mpc/1.0.3
gcc/5.3.0 stable b:gmp/6.0.0 b:mpfr/3.1.3 b:mpc/1.0.3
gcc/5.4.0 stable b:gmp/6.1.2 b:mpfr/3.1.5 b:mpc/1.0.3-2
gcc/5.5.0 stable b:gmp/6.1.2 b:mpfr/4.0.1 b:mpc/1.1.0-1

1
Programming/gcc/8/variants Normal file
View File

@@ -0,0 +1 @@
gcc/8.1.0 unstable b:gmp/6.1.2 b:mpfr/4.0.1 b:mpc/1.1.0

1
Programming/perl/5/variants Normal file
View File

@@ -0,0 +1 @@
perl/5.26.1 stable

17
Programming/perl/build Executable file
View File

@@ -0,0 +1,17 @@
#!/usr/bin/env modbuild
SOURCE_URL="http://www.cpan.org/src/5.0/$P-$V.tar.gz"
pbuild::configure() {
"${MODULE_SRCDIR}"/configure.gnu \
--prefix="${PREFIX}" \
|| exit 1
}
pbuild::post_build() {
make test
}
pbuild::compile_in_sourcetree
pbuild::add_to_group 'Programming'
pbuild::make_all

19
Programming/perl/modulefile Normal file
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@@ -0,0 +1,19 @@
#%Module1.0
module-whatis "scripting language."
module-url "http://www.perl.org/"
module-license "See https://dev.perl.org/licenses/"
module-maintainer "Achim Gsell <achim.gsell@psi.ch>"
module-help "
Perl 5 is a highly capable, feature-rich programming language with
over 29 years of development. Perl 5 runs on over 100 platforms from
portables to mainframes and is suitable for both rapid prototyping
and large scale development projects.
'Perl' is a family of languages, 'Perl 6' is part of the family, but
it is a separate language which has its own development team. Its
existence has no significant impact on the continuing development of
'Perl 5'.
"

1
Tools/asciidoc/8/variants Normal file
View File

@@ -0,0 +1 @@
asciidoc/8.6.9 stable Python/2.7.14

31
Tools/asciidoc/build Executable file
View File

@@ -0,0 +1,31 @@
#!/usr/bin/env modbuild
SOURCE_URL="https://sourceforge.net/projects/asciidoc/files/$P/$V/$P-$V.tar.gz"
pbuild::configure() {
"${MODULE_SRCDIR}"/configure \
--prefix="${PREFIX}" \
|| exit 1
}
pbuild::compile_in_sourcetree
pbuild::add_to_group 'Tools'
pbuild::set_docfiles \
BUGS \
BUGS.txt \
CHANGELOG \
CHANGELOG.txt \
COPYING \
COPYRIGHT \
INSTALL \
INSTALL.txt \
MANIFEST \
README \
README.txt
pbuild::make_all
# Local Variables:
# mode: sh
# sh-basic-offset: 8
# tab-width: 8
# End:

18
Tools/asciidoc/modulefile Normal file
View File

@@ -0,0 +1,18 @@
#%Module1.0
module-whatis "translater for asciidoc formatted documents"
module-url "http://www.methods.co.nz/asciidoc/index.html"
module-license "GPL v2"
module-maintainer "Achim Gsell <achim.gsell@psi.ch>"
module-help "
AsciiDoc is a text document format for writing notes, documentation,
articles, books, ebooks, slideshows, web pages, man pages and blogs.
AsciiDoc files can be translated to many formats including HTML, PDF,
EPUB, man page.
AsciiDoc is highly configurable: both the AsciiDoc source file syntax
and the backend output markups (which can be almost any type of SGML/XML
markup) can be customized and extended by the user.
"

4
Tools/git/2/variants
View File

@@ -2,5 +2,5 @@ git/2.3.3 stable Tcl/8.6.4 Tk/8.6.4
git/2.5.2 stable Tcl/8.6.4 Tk/8.6.4
git/2.8.1 stable Tcl/8.6.4 Tk/8.6.4
git/2.11.1 stable Tcl/8.6.4 Tk/8.6.4
git/2.13.0 stable Tcl/8.6.4 Tk/8.6.4
git/2.16.2 stable Tcl/8.6.4 Tk/8.6.4
git/2.13.0 stable Tcl/8.6.4 Tk/8.6.4 b:perl b:asciidoc b:xmlto
git/2.16.2 stable Tcl/8.6.4 Tk/8.6.4 b:perl b:asciidoc b:xmlto

1
Tools/git/build
View File

@@ -15,6 +15,7 @@ pbuild::configure() {
"${MODULE_SRCDIR}"/configure \
--prefix="${PREFIX}" \
--with-tcltk \
--with-perl="${PERL_PREFIX}/bin/perl" \
|| exit 1
}

1
Tools/openssl/1/variants
View File

@@ -1,2 +1,3 @@
openssl/1.0.2h deprecated
openssl/1.0.2j stable
openssl/1.0.2o stable

2
Tools/vim/8/variants
View File

@@ -1 +1 @@
vim/8.0.586 unstable
vim/8.0.586 unstable b:Python/2.7.14

2
Tools/vim/build
View File

@@ -7,6 +7,8 @@ pbuild::configure() {
cd "${MODULE_SRCDIR}"
"${MODULE_SRCDIR}"/configure \
--prefix="${PREFIX}" \
--enable-pythoninterp=dynamic \
--enable-python3interp=dynamic \
|| exit 1
}

1
Tools/xmlto/0/variants Normal file
View File

@@ -0,0 +1 @@
xmlto/0.0.28 stable

26
Tools/xmlto/build Executable file
View File

@@ -0,0 +1,26 @@
#!/usr/bin/env modbuild
SOURCE_URL="https://releases.pagure.org/$P/$P-$V.tar.bz2"
pbuild::configure() {
"${MODULE_SRCDIR}"/configure \
--prefix="${PREFIX}" \
|| exit 1
}
pbuild::compile_in_sourcetree
pbuild::add_to_group 'Tools'
pbuild::set_docfiles \
AUTHORS \
COPYING \
FAQ \
NEWS \
README \
THANKS
pbuild::make_all
# Local Variables:
# mode: sh
# sh-basic-offset: 8
# tab-width: 8
# End:

18
Tools/xmlto/modulefile Normal file
View File

@@ -0,0 +1,18 @@
#%Module1.0
module-whatis "script to convert XML to other formats"
module-url "https://pagure.io/xmlto"
module-license "GPL v2"
module-maintainer "Achim Gsell <achim.gsell@psi.ch>"
module-help "
Utility xmlto is a simple shell script for converting XML files to various
formats. It serves as easy to use command line frontend to make fine output
without remembering many long options and searching for the syntax of the
backends.
At the moment it supports conersion from docbook, xhtml1 and fo format to
various output formats(awt, fo, htmlhelp, javahelp, mif, pdf, svg, xhtml,
dvi, html, html-nochunks, man , pcl, ps, txt, xhtml-nochunks)
"

28
bin/update_releases Executable file
View File

@@ -0,0 +1,28 @@
#!/bin/bash
declare buildblock=$1
declare variants=$2
declare -r OS=$(uname -s)
# File format example
# openmpi/1.10.2 unstable gcc/4.8.5
declare -a toks=()
declare version=''
declare release=''
declare -a dependencies=()
while read -a toks; do
# skip comment and empty line
(( ${#toks[@]} == 0 )) && continue
[[ "${toks[0]:0:1}" == "#" ]] && continue
module=${toks[0]}
release=${toks[1]}
dependencies=( ${toks[@]:2} )
"${buildblock}" "${module#*/}" "${dependencies[@]/#/--with=}"
if [[ $? != 0 ]]; then
echo "Failed building: ${module} --release=${release} ${dependencies[@]/#/--with=}" 1>&2
exit 42
fi
done < "${variants}"