Merge branch 'master' of gitorious.psi.ch:scicomp/psi-modules-buildenvironment

.gitignore

@@ -1,2 +1,3 @@
 tmp
 *~
+Downloads

config/pmodules_version.conf

@@ -1,2 +1,2 @@
-PMODULES_VERSION=0.99.0
-MODULES_VERSION=3.2.10
+declare -x PMODULES_VERSION=0.99.1
+declare -x MODULES_VERSION=3.2.10

config/versions.conf

@@ -1,7 +1,7 @@
 autoconf	2.69
 automake	1.14
 bash		4.3.30
-boost		1.55.0
+boost		1.57.0
 BoxLib		2014-02-28
 cmake		2.8.12.2
 dialog		1.2.1
@@ -17,8 +17,8 @@ fsstress	1.0.0
 h5hut_serial	1.99.13
 H5hut		1.99.13
 H5root		1.2.0
-hdf5_serial	1.8.12
-hdf5		1.8.12
+hdf5_serial	1.8.14
+hdf5		1.8.14
 ippl		1.1.3
 libtool		2.4.2
 libungif	4.1.4
@@ -36,11 +36,11 @@ OpenBLAS_OMP	0.2.9
 parmetis	3.2.0
 patchelf	0.8.1
 Python		3.4.0
-root		5.34.19
+root		5.34.26
 SuperLU		4.3
 SuperLU_DIST	3.3
 Tcl		8.6.3
 tiff		4.0.3
-trilinos	11.10.2
+trilinos	11.12.1
 UMFPACK		5.6.2
 vtk		5.10.1

lib/libem.bash

@@ -25,6 +25,8 @@ declare -xr BUILD_TMPDIR="${BUILD_BASEDIR}/tmp"
 declare -xr BUILD_DOWNLOADSDIR="${BUILD_BASEDIR}/Downloads"
 declare -xr BUILD_VERSIONSFILE="${BUILD_CONFIGDIR}/versions.conf"
 
+declare -xr PSI_TEMPLATES_DIR='templates'
+
 if [[ -z "${BUILD_CONFIGDIR}/families.d/"*.conf ]]; then
 	die 1 "Default family configuration not set in ${BUILD_CONFIGDIR}/families.d"
 fi
@@ -151,26 +153,27 @@ fi
 
 # while bootstraping the module command is not yet available
 if [[ ${bootstrap} == no ]]; then
-	source	"${PSI_PREFIX}/${PSI_CONFIG_DIR}/profile.bash"
+        source	"${PSI_PREFIX}/${PSI_CONFIG_DIR}/profile.bash"
+	MODULECMD="${PMODULES_HOME}/bin/modulecmd"
 	[[ -x ${MODULECMD} ]] || die 1 "${MODULECMD}: no such executable"
 	module use unstable
 	module purge
 fi
 
-P=$(basename $0)
-P=${P%.*}
+P=$(basename $(dirname "${BUILDSCRIPT}"))
 _P=$(echo $P | tr [:lower:] [:upper:])
 _P=${_P//-/_}
 _V=${_P}_VERSION
 
 eval "${ENVIRONMENT_ARGS}"
 
-if [[ ${PSI_RELEASES_CONF} ]] && [[ -r "${PSI_PREFIX}/${PSI_RELEASES_CONF}" ]]; then
-        declare -r releases=:$(< "${PSI_PREFIX}/${PSI_RELEASES_CONF}"):
+if [[ -n ${PSI_RELEASES} ]]; then
+        declare -r releases="${PSI_RELEASES}"
 else
 	# set defaults, if file doesn't exist or isn't readable
 	declare -r releases=":unstable:stable:deprecated:"
 fi
+
 is_release () {
 	[[ ${releases} =~ :$1: ]]
 }
@@ -192,7 +195,7 @@ function em.add_to_family() {
 	if [[ -z ${1} ]]; then
 		die 42 "${FUNCNAME}: Missing family argument."
 	fi
-	if [[ ! -d ${PSI_PREFIX}/${PSI_CONFIG_DIR}/${1} ]]; then
+	if [[ ! -d ${PSI_PREFIX}/${PSI_MODULES_ROOT}/${1} ]]; then
 		die 43 "${1}: family does not exist."
 	fi
 	MODULE_FAMILY=$1
@@ -219,8 +222,14 @@ function module_is_available() {
 }
 
 function _load_build_dependencies() {
+	# :FIXME: merge this two loops, load only modules which are required
+	#         this merge is not as easy as it looks like at a first glance!
 	for m in "${with_modules[@]}"; do
-		module load "${m}"
+		if module_is_available "$m"; then
+			module load "${m}"
+		else
+			die 44 "$m: module not available!"
+		fi
 	done
 	for m in "${MODULE_BUILD_DEPENDENCIES[@]}"; do
 		[[ -z $m ]] && continue
@@ -273,7 +282,7 @@ function _load_build_dependencies() {
 				esac
 				shift
 			done
-			"${BUILD_SCRIPTSDIR}/${m/\/*}.build" ${args[@]}
+			"${BUILD_SCRIPTSDIR}"/*/"${m/\/*}/build" ${args[@]}
 			if [[ -z $(module avail "$m" 2>&1) ]]; then
 				die 1 "$m: oops: build failed..."
 			fi
@@ -530,7 +539,7 @@ if [[ ${bootstrap} == yes ]]; then
 	    MODULE_SRCDIR="${BUILD_TMPDIR}/src/${P/_serial}-$V"
 	    MODULE_BUILDDIR="${BUILD_TMPDIR}/build/$P-$V"
 	    MODULE_FAMILY='Tools'
-	    MODULE_NAME="Pmodules/0.99.0"
+	    MODULE_NAME="Pmodules/${PMODULES_VERSION}"
 	    # set PREFIX of module
 	    PREFIX="${PSI_PREFIX}/${MODULE_FAMILY}/${MODULE_NAME}"
 	    
@@ -617,7 +626,7 @@ function _set_link() {
 		    local x
 		    IFS='/' x=( ${dir_name/${PSI_PREFIX}\/${PSI_MODULES_ROOT}\/} )
 		    local n=${#x[@]}
-		    local -r _target="../"$(eval printf "../%.s" {1..${n}})${PSI_CONFIG_DIR##*/}/"${MODULE_FAMILY}/${P}/modulefile"
+		    local -r _target="../"$(eval printf "../%.s" {1..${n}})${PSI_TEMPLATES_DIR##*/}/"${MODULE_FAMILY}/${P}/modulefile"
 		    ln -fs "${_target}" "${MODULE_NAME##*/}"
 	    )
 	fi

scripts/Bootstrap/.gitignore

@@ -0,0 +1 @@
+modulecmd

scripts/Bootstrap/bash

@@ -1,18 +1,16 @@
 #!/bin/bash
 
+#############################################################################
+# bash 3 or newer ...
+#
 if [ ${BASH_VERSINFO:-0} -lt 3 ]; then
 	echo "BASH version ${BASH_VERSION} ist not supported! You need at least version 3..."
 	return
 fi
 
-if [ "${LOADEDMODULES:-}" = "" ]; then
-	declare -x LOADEDMODULES=
-fi
-
-if [[ -r "${PSI_BASH_COMPLETION}" ]]; then
-	source "${PSI_BASH_COMPLETION}"
-fi
-
+#############################################################################
+# implement module comand as function
+#
 module() {
 	local -r modulecmd="${PMODULES_HOME}/bin/modulecmd"
 
@@ -63,6 +61,72 @@ module() {
 }
 export -f module
 
+#############################################################################
+# helper functions
+#
+append_path () {
+	local -r P=$1
+	local -r d=$2
+
+        if ! echo ${!P} | egrep -q "(^|:)${d}($|:)" ; then
+		if [[ -z ${!P} ]]; then
+			eval $P=${d}
+		else
+			eval $P="${!P}:${d}"
+        	fi
+	fi
+}
+
+prepend_path () {
+	local -r P=$1
+	local -r d=$2
+
+        if ! echo ${!P} | egrep -q "(^|:)${d}($|:)" ; then
+		if [[ -z ${!P} ]]; then
+			eval $P=${d}
+		else
+			eval $P="${d}:${!P}"
+        	fi
+	fi
+}
+
+#############################################################################
+# setup environment
+#
+if [[ -z ${LOADEDMODULES} ]]; then
+	declare -x LOADEDMODULES=''
+fi
+
+if [[ -z ${MODULEPATH} ]]; then
+	declare -x MODULEPATH=''
+fi
+
+if [[ -z ${PSI_LOADEDFAMILIES} ]]; then
+	declare -x PSI_LOADEDFAMILIES=''
+fi
+for f in ${PSI_DEFAULT_FAMILIES}; do
+	append_path MODULEPATH "${PSI_PREFIX}/${PSI_MODULES_ROOT}/$f"
+	append_path PSI_LOADEDFAMILIES "${f}"
+done
+
+append_path PATH    "${PMODULES_HOME}/bin"
+append_path MANPATH "${PMODULES_HOME}/share/man"
+
+#############################################################################
+# initialize bash completion
+#
+if [[ -r "${PMODULES_HOME}/init/bash_completion" ]]; then
+	source "${PMODULES_HOME}/init/bash_completion"
+fi
+
+#############################################################################
+# legacy...
+#
+declare -x MODULE_VERSION=${PMODULES_VERSION}
+declare -x MODULE_VERSION_STACK="${PMODULE_VERSION}"
+declare -x MODULESHOME="${PMODULES_HOME}"
+
+
 # Local Variables:
 # mode: sh
 # sh-basic-offset: 8

scripts/Bootstrap/bash.build

@@ -1 +0,0 @@
-../System/bash.build

scripts/Bootstrap/bash.build

@@ -0,0 +1,13 @@
+#!/bin/bash
+
+source "$(dirname $0)/../../lib/libem.bash"
+
+function em.configure() {
+	"${MODULE_SRCDIR}"/configure \
+		--prefix="${PREFIX}" \
+		|| exit 1
+}
+
+em.add_to_family 'System'
+em.set_build_dependencies "${COMPILER}"
+em.make_all

scripts/Bootstrap/bash_completion

@@ -2,7 +2,7 @@
 # Bash commandline completion (bash 3.0 and above) for Modules 3.2.10
 #
 _module_avail() {
-	"${MODULESHOME}"/bin/modulecmd bash -t avail 2>&1 | sed '
+	"${PMODULES_HOME}"/bin/modulecmd bash -t avail 2>&1 | sed '
 		/:$/d;
 		/:ERROR:/d;
 		s#^\(.*\)/\(.\+\)(default)#\1\n\1\/\2#;

scripts/Bootstrap/build_pmodules.sh

@@ -3,9 +3,11 @@
 declare -r BASE_DIR=$(cd "$(dirname $0)/../.." && pwd)
 declare -r BOOTSTRAP_DIR="${BASE_DIR}/scripts/Bootstrap"
 
-source "/opt/psi/config/environment.bash"
 source "${BASE_DIR}/config/pmodules_version.conf"
 
+unset PMODULES_HOME
+source "/opt/psi/config/environment.bash"
+
 ${BOOTSTRAP_DIR}/gettext.build --bootstrap
 ${BOOTSTRAP_DIR}/getopt.build --bootstrap
 ${BOOTSTRAP_DIR}/dialog.build --bootstrap

scripts/Bootstrap/dialog.build

@@ -1 +0,0 @@
-../Tools/dialog.build

scripts/Bootstrap/dialog.build

@@ -0,0 +1,13 @@
+#!/bin/bash
+
+source "$(dirname $0)/../../lib/libem.bash"
+
+function em.configure() {
+	"${MODULE_SRCDIR}"/configure \
+		--prefix="${PREFIX}" \
+		|| exit 1
+}
+
+em.add_to_family 'Tools'
+em.set_build_dependencies "${COMPILER}"
+em.make_all

scripts/Bootstrap/environment.bash

@@ -0,0 +1,30 @@
+#!/bin/bash
+
+declare -x PSI_PREFIX=$(cd $(dirname "${BASH_SOURCE}")/.. && pwd)
+declare -x PSI_CONFIG_DIR=$(basename $(cd $(dirname "${BASH_SOURCE}") && pwd))
+
+if [[ -z ${PMODULES_VERSION} ]]; then
+	declare -x PMODULES_VERSION="0.99.1"
+fi
+
+declare -x PMODULES_HOME="${PSI_PREFIX}/Tools/Pmodules/${PMODULES_VERSION}"
+
+declare -A PSI_FAMILIES=( 
+	['Legacy']=0
+	['Libraries']=0
+	['Programming']=0
+	['Numeric']=0
+	['System']=0
+	['Tools']=0
+	['Compiler']=2
+	['MPI']=4
+	['HDF5_serial']=4
+	['HDF5']=6
+)
+
+declare -x PSI_MODULES_ROOT='modulefiles'
+
+declare -x PSI_DEFAULT_FAMILIES='Tools Programming'
+
+declare -x PSI_RELEASES=':unstable:stable:deprecated:'
+declare -x PSI_USED_RELEASES='stable'

scripts/Bootstrap/getopt.build

@@ -1 +0,0 @@
-../System/getopt.build

scripts/Bootstrap/getopt.build

@@ -0,0 +1,42 @@
+#!/bin/bash
+
+source "$(dirname $0)/../../lib/libem.bash"
+
+function em.configure() {
+	:
+}
+
+function em.build() {
+	case ${OS} in
+		Linux )
+			declare -x LDFLAGS="-lintl -liconv"
+			;;
+		Darwin )
+			declare -x LDFLAGS="-lintl -liconv -framework CoreFoundation"
+			;;
+	esac
+
+	cd "${MODULE_SRCDIR}"
+	make -e
+}
+
+function em.install() {
+	cd "${MODULE_SRCDIR}"
+	declare -x DESTDIR="${PREFIX}"
+	declare -x prefix=''
+	make -e install
+}
+
+function em.cleanup_build() {
+	cd "${MODULE_SRCDIR}"
+	make -e realclean
+}
+
+em.add_to_family 'Tools'
+em.make_all
+
+# Local Variables:
+# mode: sh
+# sh-basic-offset: 8
+# tab-width: 8
+# End:

scripts/Bootstrap/gettext.build

@@ -1 +0,0 @@
-../Tools/gettext.build

scripts/Bootstrap/gettext.build

@@ -0,0 +1,24 @@
+#!/bin/bash
+
+source "$(dirname $0)/../../lib/libem.bash"
+
+function em.configure() {
+    "${MODULE_SRCDIR}"/configure \
+		      --prefix="${PREFIX}" \
+		      --disable-java \
+		      --disable-threads \
+		      --disable-shared \
+		      --enable-relocatable \
+		      --disable-openmp \
+		      --disable-acl \
+		      --disable-curses \
+		      --with-included-gettext \
+		      --without-libiconv-prefix \
+		      --without-libintl-prefix \
+		      --with-included-libxml \
+	|| exit 1
+}
+
+em.add_to_family 'Tools'
+em.set_build_dependencies "${COMPILER}"
+em.make_all

scripts/Bootstrap/install_pmodules.sh

@@ -3,22 +3,27 @@
 declare -r BASE_DIR=$(cd "$(dirname $0)/../.." && pwd)
 declare -r BOOTSTRAP_DIR="${BASE_DIR}/scripts/Bootstrap"
 
-source "/opt/psi/config/environment.bash"
 source "${BASE_DIR}/config/pmodules_version.conf"
 
+unset PMODULES_HOME
+source "/opt/psi/config/environment.bash"
+
 sed_cmd="s:@PMODULES_HOME@:${PMODULES_HOME}:g;"
 sed_cmd+="s:@PMODULES_VERSION@:${PMODULES_VERSION}:g;"
 sed_cmd+="s:@MODULES_VERSION@:${MODULES_VERSION}:g"
 sed "${sed_cmd}" "${BOOTSTRAP_DIR}/modulecmd.bash" > "${BOOTSTRAP_DIR}/modulecmd"
 
-install -d -m 0755 "${PMODULES_HOME}/etc"
+install -d -m 0755 "${PMODULES_HOME}/bin"
+install -d -m 0755 "${PMODULES_HOME}/config"
+install -d -m 0755 "${PMODULES_HOME}/init"
+install -d -m 0755 "${PMODULES_HOME}/lib"
 
 install -m 0755 "${BOOTSTRAP_DIR}/modulecmd" "${PMODULES_HOME}/bin"
 install -m 0755 "${BOOTSTRAP_DIR}/init_local_env.bash" "${PMODULES_HOME}/bin"
 install -m 0755 "${BOOTSTRAP_DIR}/modsync.bash" "${PMODULES_HOME}/bin"
 install -m 0755 "${BOOTSTRAP_DIR}/dialog.bash" "${PMODULES_HOME}/bin"
 
-install -m 0644 "${BOOTSTRAP_DIR}/modulerc" "${PMODULES_HOME}/etc"
+#install -m 0644 "${BOOTSTRAP_DIR}/modulerc" "${PMODULES_HOME}/config"
 
 install -m 0644 "${BOOTSTRAP_DIR}/bash" "${PMODULES_HOME}/init"
 install -m 0644 "${BOOTSTRAP_DIR}/bash_completion" "${PMODULES_HOME}/init"

scripts/Bootstrap/modulecmd.bash

@@ -3,7 +3,9 @@
 declare -r  PMODULES_DIR=$( cd "$(dirname $0)/.." && pwd )
 declare -r  version='@PMODULES_VERSION@'
 declare -r  modulecmd="${PMODULES_DIR}/bin/modulecmd.tcl"
-#declare -rx TCL_LIBRARY="${PMODULES_DIR}/lib/tcl8.6"
+
+declare -rx TCL_LIBRARY="${PMODULES_DIR}/lib/tcl8.6"
+declare -rx PSI_LIBMODULES="${PMODULES_DIR}/lib/libmodules.tcl"
 
 declare -r modulepath_root="${PSI_PREFIX}/${PSI_MODULES_ROOT}"
 declare -ra modulepath=( ${MODULEPATH//:/ } )
@@ -398,11 +400,11 @@ get_release() {
 	echo ${release}
 }
 
-if [[ ${PSI_RELEASES_CONF} ]] && [[ -r "${PSI_PREFIX}/${PSI_CONFIG_DIR}/${PSI_RELEASES_CONF}" ]]; then
-        declare -r available_releases=:$(< "${PSI_PREFIX}/${PSI_CONFIG_DIR}/${PSI_RELEASES_CONF}"):
+if [[ -n ${PSI_RELEASES} ]]; then
+        declare -r available_releases="${PSI_RELEASES}"
 else
 	# set defaults, if file doesn't exist or isn't readable
-	declare -r available_releases=":unstable:stable:deprecated:"
+	declare -r available_releases=':unstable:stable:deprecated:'
 fi
 declare used_releases=":${PSI_USED_RELEASES}:"
 
@@ -414,20 +416,8 @@ is_used_release() {
 	[[ ${used_releases} =~ :$1: ]]
 }
 
-declare  available_families=':'
-declare family
-declare depth
-while read family depth rest; do
-	if (( depth == 0 )); then
-	    available_families+="${family}:"
-	fi
-done < "${PSI_PREFIX}/${PSI_CONFIG_DIR}/${PSI_FAMILY_CONF}"
 declare used_families=":${PSI_LOADEDFAMILIES}:"
 
-is_family() {
-	[[ ${available_families} =~ :$1: ]]
-}
-
 is_used_family() {
 	[[ ${used_families} =~ :$1: ]]
 }
@@ -677,6 +667,27 @@ subcommand_avail() {
 	done
 }
 
+get_families () {
+	{
+		cd "${modulepath_root}"
+		echo *
+	}
+}
+
+#
+# $1: family name (not path!)
+compute_family_depth () {
+	{
+		local -r family=$1
+		cd "${modulepath_root}"
+		local -r tmp=$(find "${family}" -d -type f -o -type l | head -1)
+		local -ar tmp2=( ${tmp//\// } )
+		local depth=${#tmp2[@]}
+		let depth-=3
+		echo ${depth} 
+	};
+}
+
 subcommand_use() {
 	if [[ $# == 0 ]]; then
 		local f
@@ -686,9 +697,10 @@ subcommand_use() {
 			echo -e "\t${f}" 1>&2
 		done
 		echo -e "\nFamilies you may use in addition:" 1>&2
-		for f in ${available_families//:/ }; do
-			if ! is_used_family $f; then
-				echo -e "\t${f}" 1>&2
+		for family in $(get_families); do
+			local -i depth=$( compute_family_depth "${family}")
+			if ! is_used_family $f && (( depth == 0 )); then
+			    echo -e "\t${f}" 1>&2
 			fi
 		done
 		
@@ -699,7 +711,7 @@ subcommand_use() {
 		echo -e "\nReleases you may use in addition:" 1>&2
 		for r in ${available_releases//:/ }; do
 			if ! is_used_release $r; then
-				echo -e "\t${r}"
+				echo -e "\t${r}" 1>&2
 			fi
 		done
 
@@ -710,6 +722,7 @@ subcommand_use() {
 			fi
 		done
 	else
+
 		local dirs_to_add=()
 		local subcommand_switches=''
 		while (( $# > 0)); do
@@ -722,7 +735,16 @@ subcommand_use() {
 			        # releases are always *appended*
 			        append_path PSI_USED_RELEASES "${arg}"
 			elif [[ ! ${arg} =~ */* ]] && [[ -d ${modulepath_root}/${arg} ]]; then
-			        dirs_to_add+=( ${modulepath_root}/${arg} )
+				local -i depth=$(compute_family_depth "${arg}")
+				if (( depth == 0 )); then	
+			        	dirs_to_add+=( ${modulepath_root}/${arg} )
+				else
+					echo "${0##_}: cannot add family ${arg} to module path"
+					return 3
+				fi
+			elif [[ ${arg} =~ ^${modulepath_root} ]]; then
+				echo "${0##_}: illegal directory: ${arg}" 1>&2
+				return 3
 			elif [[ -d ${arg} ]]; then
 			        local normalized_dir=$(cd "${arg}" && pwd)
 				dirs_to_add+=( ${normalized_dir} )
@@ -808,9 +830,10 @@ subcommand_search() {
 		local -r module=$1
 		# we must write temporary results to a file for sorting
 		local -r tmpfile=$( mktemp /tmp/$(basename $0).XXXXXX ) || exit 1
-		local family depth unused
+		local family
 		# loop over all families
-		while read family depth unused; do
+		for family in $(get_families); do
+			local -i depth=$( compute_family_depth ${family} )
 			# get all potential directories of family $f with module-files 
 			local mpaths=( $(find \
 					     "${modulepath_root}/${family}" \
@@ -841,7 +864,7 @@ subcommand_search() {
 					       ${family} "${requires}" >> "${tmpfile}"
 				done
 			done
-		done < "${PSI_PREFIX}/${PSI_CONFIG_DIR}/${PSI_FAMILY_CONF}"
+		done
 		sort -k 1,1 -k 4,4 -k 5,5 "${tmpfile}" | awk "${with_modules}" 1>&2
 		
 		rm -f "${tmpfile}"

scripts/Bootstrap/modulerc

@@ -1,8 +0,0 @@
-#%Module1.0
-
-setenv PSI_LIBMODULES	"$env(PSI_PREFIX)/$env(PSI_CONFIG_DIR)/libmodules.tcl"
-
-if { ! [info exists env(PSI_LIBMODULES) ] } {
-	puts stderr "Module cannot be loaded, because the shell environment is not setup correctly."
-	exit 42
-}

scripts/Bootstrap/profile.bash

@@ -0,0 +1,39 @@
+#!/bin/bash
+
+#############################################################################
+# read Pmodules configuration
+#
+_init_env_file="$(dirname ${BASH_SOURCE})/environment.bash"
+if [[ ! -r "${_init_env_file}" ]]; then
+	echo "Oops: cannot initialize Modules!"
+	echo "${_init_env_file}: file does not exist or is not readable."
+	return 1
+fi
+source "${_init_env_file}"
+unset _init_env_file
+
+############################################################################
+# check configuration
+#
+if [[ ! -d ${PSI_PREFIX} ]] || [[ ! -d ${PMODULES_HOME} ]]; then
+	echo "Oops: cannot initialize module environment !"
+	return 1
+fi
+
+############################################################################
+# inititialize Pmodules for bash
+#
+_init_bash="${PMODULES_HOME}/init/bash"
+if [[ ! -r "${_init_bash}" ]]; then
+	echo "Oops: cannot initialize Modules!"
+	echo "${_init_bash}: File does not exist or is not readable."
+	return 1
+fi
+source "${_init_bash}"
+unset _init_bash
+
+# Local Variables:
+# mode: sh
+# sh-basic-offset: 8
+# tab-width: 8
+# End:

scripts/Compiler/H5root/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source $(dirname $0)/../../lib/libem.bash
+source $(dirname $0)/../../../lib/libem.bash
 
 function em.pre_configure() {
 	./autogen.sh

scripts/Compiler/OpenBLAS/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	cat <<EOF > "${MODULE_SRCDIR}/make.inc"

scripts/Compiler/OpenBLAS_OMP/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	cat <<EOF > "${MODULE_SRCDIR}/make.inc"

scripts/Compiler/SuperLU/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	cat <<EOF > "${MODULE_SRCDIR}/make.inc"

scripts/Compiler/UMFPACK/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	cat <<EOF > "${MODULE_SRCDIR}/SuiteSparse_config/SuiteSparse_config.mk"

scripts/Compiler/boost/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 # :TODO: detect compiler
 TOOLSET=gcc

scripts/Compiler/gsl/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Compiler/hdf5_serial/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Compiler/openmpi/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Compiler/root/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 case ${OS} in
 Darwin )

scripts/Compiler/vtk/build

@@ -6,7 +6,7 @@
 #   and remove these strings.
 #
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 case ${OS} in
 Darwin )

scripts/HDF5/H5hut/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.pre_configure() {
 	./autogen.sh

scripts/HDF5/netcdf/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.pre_configure() {
 	:

scripts/HDF5_serial/H5hut_serial/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	(cd "${MODULE_SRCDIR}" && ./autogen.sh)

scripts/Libraries/giflib/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Libraries/gmp/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Libraries/libungif/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Libraries/mpc/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Libraries/mpfr/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Libraries/tiff/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/MPI/BoxLib/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	CC=$MPICC CXX=$MPICXX cmake \

scripts/MPI/OPAL/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 module use unstable
 

scripts/MPI/SuperLU_DIST/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	cat <<EOF > "${MODULE_SRCDIR}/make.inc"

scripts/MPI/hdf5/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	CC=$MPICC

scripts/MPI/ippl/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	CC=$MPICC

scripts/MPI/optPilot/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 module use unstable
 

scripts/MPI/parmetis/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	CC=$MPICC

scripts/MPI/trilinos/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 declare -rx AR=ar
 

scripts/Programming/Python/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Programming/Tcl/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	case ${OS} in

scripts/Programming/autoconf/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Programming/automake/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Programming/cmake/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}/bootstrap" --prefix="${PREFIX}"

scripts/Programming/gcc/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Programming/gtest/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 em.add_to_family 'Programming'
 em.set_runtime_dependencies ""

scripts/Programming/libtool/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Programming/lua.build

@@ -1,25 +0,0 @@
-#!/bin/bash
-#
-# Lua cannot be build in a seperate directory!
-#
-
-source "$(dirname $0)/../../lib/libem.bash"
-
-function em.configure() {
-        cd "${MODULE_SRCDIR}"
-	"${MODULE_SRCDIR}"/configure \
-		--prefix="${PREFIX}" \
-		|| exit 1
-}
-
-function em.build() {
-        cd "${MODULE_SRCDIR}"
-
-	make -j ${JOBS}
-}
-
-em.supported_os ''
-em.add_to_family 'Programming'
-em.set_build_dependencies "${COMPILER}"
-em.make_all
-em.cleanup_src

scripts/Programming/m4/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Programming/psi-python27/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	:

scripts/System/bash.build

@@ -1,13 +0,0 @@
-#!/bin/bash
-
-source "$(dirname $0)/../../lib/libem.bash"
-
-function em.configure() {
-	"${MODULE_SRCDIR}"/configure \
-		--prefix="${PREFIX}" \
-		|| exit 1
-}
-
-em.add_to_family 'System'
-em.set_build_dependencies "${COMPILER}"
-em.make_all

scripts/System/filebench/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/System/fsstress/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	:

scripts/System/getopt.build

@@ -1,42 +0,0 @@
-#!/bin/bash
-
-source "$(dirname $0)/../../lib/libem.bash"
-
-function em.configure() {
-	:
-}
-
-function em.build() {
-	case ${OS} in
-		Linux )
-			declare -x LDFLAGS="-lintl -liconv"
-			;;
-		Darwin )
-			declare -x LDFLAGS="-lintl -liconv -framework CoreFoundation"
-			;;
-	esac
-
-	cd "${MODULE_SRCDIR}"
-	make -e
-}
-
-function em.install() {
-	cd "${MODULE_SRCDIR}"
-	declare -x DESTDIR="${PREFIX}"
-	declare -x prefix=''
-	make -e install
-}
-
-function em.cleanup_build() {
-	cd "${MODULE_SRCDIR}"
-	make -e realclean
-}
-
-em.add_to_family 'Tools'
-em.make_all
-
-# Local Variables:
-# mode: sh
-# sh-basic-offset: 8
-# tab-width: 8
-# End:

scripts/System/mathlib.build

@@ -1,50 +0,0 @@
-#!/bin/bash
-
-source "$(dirname $0)/../lib/libem.bash"
-
-function em.configure() {
-	:
-}
-
-function em.build() {
-	cd "${MODULE_SRCDIR}"
-
-
-	install -m 0755 -d "${PREFIX}/include"
-	install -m 0755 -d "${PREFIX}/lib"
-	install -m 0755 -d "${DOCDIR}/lapack"
-
-	(
-		cp make.inc.blas BLAS/make.inc
-		cd BLAS
-		make -e -j3 || exit 1
-		install -m 0644 libblas.a "${PREFIX}/lib" || exit 1
-	) || exit 1
-
-	(
-		cp make.inc.cblas CBLAS/Makefile.in
-		cd CBLAS
-		make -e || exit 1
-		install -m 0644 include/* "${PREFIX}/include" || exit 1
-		install -m 0644 lib/* "${PREFIX}/lib" || exit 1
-	) || exit 1
-	(
-		cp make.inc.lapack lapack/make.inc
-		cd lapack
-		make -e -j3 || exit 1
-		make -e -j3 lapackelib || exit 1
-		install -m 0644 lapacke/include/* "${PREFIX}/include" || exit 1
-		install -m 0644 lib*.a "${PREFIX}/lib" || exit 1
-		install -m 0444 README LICENSE "${DOCDIR}/lapack"
-	) || exit 1
-}
-
-function em.install() {
-	:
-}
-
-em.add_to_family 'Compiler'
-em.set_runtime_dependencies "${COMPILER}"
-em.set_build_dependencies "${COMPILER}"
-em.make_all
-em.cleanup_src

scripts/System/nmap/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	cd "${MODULE_SRCDIR}"

scripts/System/patchelf/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Tools/Modules.build

@@ -1,37 +0,0 @@
-#!/bin/bash
-
-source "$(dirname $0)/../../lib/libem.bash"
-
-TCL_VERSION='8.6.3'
-TCL_DIR="${PSI_PREFIX}/Programming/Tcl/${TCL_VERSION}"
-
-PATH="${TCL_DIR}/bin:${PATH}"
-
-case ${OS} in
-Linux )
-	declare -x LIBS="-lz -lpthread"
-	;;
-Darwin )
-	declare -x LIBS="-lz -framework CoreFoundation"
-	;;
-esac
-
-function em.configure() {
-	CPPFLAGS="-DUSE_INTERP_ERRORLINE" "${MODULE_SRCDIR}"/configure \
-		--prefix="${PSI_PREFIX}/${MODULE_FAMILY}" \
-		--with-module-path="${PSI_PREFIX}/${PSI_MODULES_ROOT}" \
-		--with-tcl="${TCL_DIR}/lib" \
-		--without-x \
-		|| exit 1
-}
-# fake module command
-module() {
-    :
-}
-
-# use system gcc to compile
-declare -rx CC=gcc
-
-em.add_to_family 'Tools'
-em.set_build_dependencies "Tcl/${TCL_VERSION}"
-em.make_all

scripts/Tools/dialog.build

@@ -1,13 +0,0 @@
-#!/bin/bash
-
-source "$(dirname $0)/../../lib/libem.bash"
-
-function em.configure() {
-	"${MODULE_SRCDIR}"/configure \
-		--prefix="${PREFIX}" \
-		|| exit 1
-}
-
-em.add_to_family 'Tools'
-em.set_build_dependencies "${COMPILER}"
-em.make_all

scripts/Tools/emacs/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 module use 'Libraries'
 

scripts/Tools/gettext.build

@@ -1,24 +0,0 @@
-#!/bin/bash
-
-source "$(dirname $0)/../../lib/libem.bash"
-
-function em.configure() {
-    "${MODULE_SRCDIR}"/configure \
-		      --prefix="${PREFIX}" \
-		      --disable-java \
-		      --disable-threads \
-		      --disable-shared \
-		      --enable-relocatable \
-		      --disable-openmp \
-		      --disable-acl \
-		      --disable-curses \
-		      --with-included-gettext \
-		      --without-libiconv-prefix \
-		      --without-libintl-prefix \
-		      --with-included-libxml \
-	|| exit 1
-}
-
-em.add_to_family 'Tools'
-em.set_build_dependencies "${COMPILER}"
-em.make_all

scripts/Tools/global/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/Tools/gnuplot/build

@@ -1,6 +1,6 @@
 #!/bin/bash
 
-source "$(dirname $0)/../../lib/libem.bash"
+source "$(dirname $0)/../../../lib/libem.bash"
 
 function em.configure() {
 	"${MODULE_SRCDIR}"/configure \

scripts/change_release

@@ -1,54 +0,0 @@
-#!/bin/bash
-
-source "$(dirname $0)/../lib/lib.bash"
-
-change_release() {
-	local m=$1
-	local with_modules=()
-	shift
-	shift
-	shift
-	while (( $# > 0 )); do
-		with_modules+=( "--with=$1" )
-		shift
-	done
-	"$(dirname $0)/${m%/*}.build"  "${m#*/}" "${with_modules[@]}" "--release=${release}"
-}
-
-declare usecmd="${PSI_PREFIX}/${PSI_CONFIG_DIR}/init/extensions/use.bash"
-declare searchcmd="${PSI_PREFIX}/${PSI_CONFIG_DIR}/init/extensions/search.bash"
-
-# :FIXME: this does not work ...
-#eval "${usecmd} deprecated"
-#eval "${usecmd} unstable"
-
-release=''
-with_modules=()
-modules=()
-while (( $# > 0 )); do
-	case $1 in
-	--release=* )
-		release=${1/--release=}
-		;;
-	--with=*/* )
-		with_modules+=( ${1} )
-		;;
-	-* )
-		die 1 "$1: illegal argument"
-		;;
-	*/* )
-		modules+=( $1 )
-		;;
-	* )
-		die 1 "$1: illegal argument"
-		;;
-	esac
-	shift
-done
-
-#[[ -z ${from_release} ]] && die 1 "--from-release missing"
-[[ -z ${release}   ]] && die 1 "--release missing"
-while read -a tokens ; do
-	echo "${tokens[@]}"
-	change_release "${tokens[@]}"
-done < <("${searchcmd}" "${modules[@]}" --no-header -a "${with_modules[@]}" 2>&1)

scripts/family.build

@@ -1,12 +0,0 @@
-#!/bin/bash
-
-source "$(dirname $0)/../lib/lib.bash"
-
-family=$1
-shift
-
-modules=$(egrep  -l "[:space:]*[\"\']$family[\"\']" "$(dirname $0)"/*.build || :)
-
-for m in ${modules}; do
-	"$m" "$@"
-done