Merge branch 'master' of gitlab.psi.ch:Pmodules/buildblocks

Compiler/atlas/3/variants

@@ -2,4 +2,7 @@ atlas/3.10.3	unstable	gcc/4.8.5
 atlas/3.10.2	deprecated	gcc/4.9.2
 atlas/3.10.3	unstable	gcc/4.9.4
 atlas/3.10.3	unstable	gcc/5.4.0
+atlas/3.10.3	unstable	gcc/5.5.0
 atlas/3.10.3	unstable	gcc/6.2.0
+atlas/3.10.3	unstable	gcc/6.4.0
+atlas/3.10.3	unstable	gcc/7.3.0

Compiler/hdf5_serial/1/variants.Linux

@@ -49,8 +49,12 @@ hdf5_serial/1.10.1	stable		gcc/6.3.0
 hdf5_serial/1.10.1	stable		gcc/7.2.0
 hdf5_serial/1.10.1	stable		gcc/7.3.0
 
+hdf5_serial/1.10.2	stable		gcc/7.3.0
+
 hdf5_serial/1.10.1	unstable	intel/17.1
 hdf5_serial/1.10.1	stable		intel/17.4
 
+hdf5_serial/1.10.2      unstable        intel/18.2
+
 hdf5_serial/1.10.1	unstable	pgi/17.3
 hdf5_serial/1.10.1	unstable	pgi/17.7

Libraries/mpc/1/variants

@@ -3,3 +3,4 @@ mpc/1.0.3	stable		b:gmp/6.1.0 b:mpfr/3.1.4
 mpc/1.0.3-1	stable		b:gmp/6.1.1 b:mpfr/3.1.4
 mpc/1.0.3-2	stable		b:gmp/6.1.2 b:mpfr/3.1.5
 mpc/1.1.0	stable		b:gmp/6.1.2 b:mpfr/4.0.0
+mpc/1.1.0-1	stable		b:gmp/6.1.2 b:mpfr/4.0.1

Libraries/mpfr/4/variants

@@ -1 +1,2 @@
 mpfr/4.0.0      stable          b:gmp/6.1.2
+mpfr/4.0.1      stable          b:gmp/6.1.2

Programming/Python/2/variants

@@ -1,2 +1,3 @@
 Python/2.7.11	stable	openssl/1.0.2j Tcl/8.6.4 Tk/8.6.4
 Python/2.7.12	stable	openssl/1.0.2j Tcl/8.6.4 Tk/8.6.4
+Python/2.7.14	stable	openssl/1.0.2o Tcl/8.6.4 Tk/8.6.4

Programming/Python/build

@@ -31,7 +31,7 @@ pbuild::post_install() {
 	pip${V_MAJOR} install pandas
 	pip${V_MAJOR} install sympy
 	pip${V_MAJOR} install nose
-	pip${V_MAJOR} install mpi4py
+	#pip${V_MAJOR} install mpi4py
 }
 
 pbuild::add_to_group 'Programming'

Programming/automake/1/variants

@@ -1,2 +1,3 @@
 automake/1.14	stable	m4/1.4.17 autoconf/2.69
 automake/1.15	stable	m4/1.4.17 autoconf/2.69
+automake/1.16	stable	m4/1.4.17 autoconf/2.69

Programming/gcc/5/variants

@@ -2,4 +2,5 @@ gcc/5.1.0	deprecated	b:gmp/5.1.1 b:mpfr/3.1.2 b:mpc/1.0.2
 gcc/5.2.0	deprecated	b:gmp/6.0.0 b:mpfr/3.1.3 b:mpc/1.0.3
 gcc/5.3.0	stable		b:gmp/6.0.0 b:mpfr/3.1.3 b:mpc/1.0.3
 gcc/5.4.0	stable		b:gmp/6.1.2 b:mpfr/3.1.5 b:mpc/1.0.3-2
+gcc/5.5.0	stable		b:gmp/6.1.2 b:mpfr/4.0.1 b:mpc/1.1.0-1
 

Programming/perl/5/variants

@@ -0,0 +1 @@
+perl/5.26.1	unstable

Programming/perl/build

@@ -0,0 +1,17 @@
+#!/usr/bin/env modbuild
+
+SOURCE_URL="http://www.cpan.org/src/5.0/$P-$V.tar.gz"
+
+pbuild::configure() {
+	"${MODULE_SRCDIR}"/configure.gnu \
+		--prefix="${PREFIX}" \
+		|| exit 1
+}
+
+pbuild::post_build() {
+	make test
+}
+
+pbuild::compile_in_sourcetree
+pbuild::add_to_group 'Programming'
+pbuild::make_all

Programming/perl/modulefile

@@ -0,0 +1,19 @@
+#%Module1.0
+
+module-whatis		"scripting language."
+module-url		"http://www.perl.org/"
+module-license		"See https://dev.perl.org/licenses/"
+module-maintainer	"Achim Gsell <achim.gsell@psi.ch>"
+
+module-help		"
+Perl 5 is a highly capable, feature-rich programming language with
+over 29 years of development. Perl 5 runs on over 100 platforms from
+portables to mainframes and is suitable for both rapid prototyping
+and large scale development projects.
+
+'Perl' is a family of languages, 'Perl 6' is part of the family, but
+it is a separate language which has its own development team. Its
+existence has no significant impact on the continuing development of
+'Perl 5'. 
+"
+

Tools/asciidoc/8/variants

@@ -0,0 +1 @@
+asciidoc/8.6.9	unstable	Python/2.7.14

Tools/asciidoc/build

@@ -0,0 +1,31 @@
+#!/usr/bin/env modbuild
+
+SOURCE_URL="https://sourceforge.net/projects/asciidoc/files/$P/$V/$P-$V.tar.gz"
+
+pbuild::configure() {
+	"${MODULE_SRCDIR}"/configure \
+		--prefix="${PREFIX}" \
+		|| exit 1
+}
+
+pbuild::compile_in_sourcetree
+pbuild::add_to_group 'Tools'
+pbuild::set_docfiles 	\
+	BUGS		\
+	BUGS.txt	\
+	CHANGELOG	\
+	CHANGELOG.txt	\
+	COPYING		\
+	COPYRIGHT	\
+	INSTALL		\
+	INSTALL.txt	\
+	MANIFEST	\
+	README		\
+	README.txt
+pbuild::make_all
+
+# Local Variables:
+# mode: sh
+# sh-basic-offset: 8
+# tab-width: 8
+# End:

Tools/asciidoc/modulefile

@@ -0,0 +1,18 @@
+#%Module1.0
+
+module-whatis		"translater for asciidoc formatted documents"
+module-url		"http://www.methods.co.nz/asciidoc/index.html"
+module-license		"GPL v2"
+module-maintainer	"Achim Gsell <achim.gsell@psi.ch>"
+
+module-help		"
+AsciiDoc is a text document format for writing notes, documentation,
+articles, books, ebooks, slideshows, web pages, man pages and blogs.
+AsciiDoc files can be translated to many formats including HTML, PDF,
+EPUB, man page.
+
+AsciiDoc is highly configurable: both the AsciiDoc source file syntax
+and the backend output markups (which can be almost any type of SGML/XML
+markup) can be customized and extended by the user.
+"
+

Tools/git/2/variants

@@ -2,5 +2,5 @@ git/2.3.3	stable		Tcl/8.6.4 Tk/8.6.4
 git/2.5.2	stable		Tcl/8.6.4 Tk/8.6.4
 git/2.8.1	stable		Tcl/8.6.4 Tk/8.6.4
 git/2.11.1	stable		Tcl/8.6.4 Tk/8.6.4
-git/2.13.0	stable		Tcl/8.6.4 Tk/8.6.4
-git/2.16.2	stable		Tcl/8.6.4 Tk/8.6.4
+git/2.13.0	stable		Tcl/8.6.4 Tk/8.6.4 b:perl b:asciidoc b:xmlto
+git/2.16.2	stable		Tcl/8.6.4 Tk/8.6.4 b:perl b:asciidoc b:xmlto

Tools/git/build

@@ -15,6 +15,7 @@ pbuild::configure() {
 	"${MODULE_SRCDIR}"/configure \
 		--prefix="${PREFIX}" \
 		--with-tcltk \
+		--with-perl="${PERL_PREFIX}/bin/perl" \
 		|| exit 1
 }
 

Tools/openssl/1/variants

@@ -1,2 +1,3 @@
 openssl/1.0.2h       deprecated
 openssl/1.0.2j       stable
+openssl/1.0.2o       stable

Tools/xmlto/0/variants

@@ -0,0 +1 @@
+xmlto/0.0.28	stable

Tools/xmlto/build

@@ -0,0 +1,26 @@
+#!/usr/bin/env modbuild
+
+SOURCE_URL="https://releases.pagure.org/$P/$P-$V.tar.bz2"
+
+pbuild::configure() {
+	"${MODULE_SRCDIR}"/configure \
+		--prefix="${PREFIX}" \
+		|| exit 1
+}
+
+pbuild::compile_in_sourcetree
+pbuild::add_to_group 'Tools'
+pbuild::set_docfiles	\
+	AUTHORS		\
+	COPYING		\
+	FAQ		\
+	NEWS		\
+	README		\
+	THANKS 
+pbuild::make_all
+
+# Local Variables:
+# mode: sh
+# sh-basic-offset: 8
+# tab-width: 8
+# End:

Tools/xmlto/modulefile

@@ -0,0 +1,18 @@
+#%Module1.0
+
+module-whatis		"script to convert XML to other formats"
+module-url		"https://pagure.io/xmlto"
+module-license		"GPL v2"
+module-maintainer	"Achim Gsell <achim.gsell@psi.ch>"
+
+module-help		"
+Utility xmlto is a simple shell script for converting XML files to various
+formats. It serves as easy to use command line frontend to make fine output
+without remembering many long options and searching for the syntax of the
+backends.
+
+At the moment it supports conersion from docbook, xhtml1 and fo format to
+various output formats(awt, fo, htmlhelp, javahelp, mif, pdf, svg, xhtml,
+dvi, html, html-nochunks, man , pcl, ps, txt, xhtml-nochunks) 
+"
+