Check in older anaconda versions.

Version 2019.03 was an alpha version but got deployed. This updates it
to use the current modulefile.

Programming/anaconda/2019.07/conda-env-defs/cryocare/README.md

@@ -0,0 +1,20 @@
+# INSTALLATION
+
+IMPORTANT! DON'T INSTALL WITH AURISTOR. Use an OpenAFS system (e.g. pmod6)
+
+    CONDA_COPY_ALWAYS=1 conda env create --file cryocare.yml
+    conda activate cryocare
+
+Now configure jupyter
+
+    cp share/jupyter/kernels/python3/kernel.json $CONDA_PREFIX/share/jupyter/kernels/python3/
+    cp etc/conda/activate.d/cryocare-env.sh $CONDA_PREFIX/etc/conda/activate.d/
+    cp etc/conda/deactivate.d/cryocare-env.sh $CONDA_PREFIX/etc/conda/deactivate.d/
+
+## Package notes
+
+- cudatoolkit version is fixed because it needs to match merlin6's CUDA module
+  (required by the MotionCor2 package).
+- This environment installs packages for gpu support, but these currently don't
+  seem to be working on merlin.
+

Programming/anaconda/2019.07/conda-env-defs/cryocare/cryocare.yml

@@ -0,0 +1,33 @@
+name: cryocare
+channels:
+  - conda-forge
+  - defaults
+dependencies:
+  - python=3.7
+  - dask
+  - dask-jobqueue
+  - deap
+  - docopt
+  - graphviz
+  - ipython
+  - ipywidgets
+  - keras
+  - matplotlib
+  - mrcfile
+  - nb_conda_kernels
+  - numpy
+  - pandas
+  - plotly
+  - pytables
+  - python-graphviz
+  - scikit-learn
+  - scipy
+  - seaborn
+  - tensorflow=1.13.1
+  - tensorflow-gpu
+  - tifffile
+  - cudatoolkit=9.2
+  - cudnn
+  - pip:
+    - csbdeep
+    - pixiedust

Programming/anaconda/2019.07/conda-env-defs/cryocare/etc/conda/activate.d/cryocare-env.sh

@@ -0,0 +1,16 @@
+#!/bin/bash
+echo "Running hook for adding PSI modules" >&2
+if [[ x$(command -v module) = x ]]; then
+    echo "setting up module env" >&2
+    # source /opt/psi/config/profile.bash
+    module() {
+        unset BASH_ENV;
+        eval $("${PMODULES_HOME}/bin/modulecmd" bash "$@")
+    }
+fi
+
+module use unstable
+module use EM
+module load cuda/9.2.148 MotionCor2/1.2.0 IMOD/4.9.5
+echo "DEBUG: loaded modules after addition:" >&2
+module list >&2

Programming/anaconda/2019.07/conda-env-defs/cryocare/etc/conda/deactivate.d/cryocare-env.sh

@@ -0,0 +1,14 @@
+echo "Running hook for removing PSI modules" >&2
+if [[ x$(command -v module) = x ]]; then
+    echo "setting up module env" >&2
+    # source /opt/psi/config/profile.bash
+    module() {
+        unset BASH_ENV;
+        eval $("${PMODULES_HOME}/bin/modulecmd" bash "$@")
+    }
+fi
+echo "DEBUG: loaded modules prior to removal" >&2
+module list >&2
+module unload cuda/9.2.148 MotionCor2/1.2.0 IMOD/4.9.5 >&2
+echo "DEBUG: loaded modules after removal" >&2
+module list >&2

Programming/anaconda/2019.07/conda-env-defs/cryocare/share/jupyter/kernels/python3/kernel.json

@@ -0,0 +1,13 @@
+{
+    "argv": [
+        "/opt/psi/Programming/anaconda/2019.07/admintools/kernelwrapper.sh",
+        "cryocare",
+        "/opt/psi/Programming/anaconda/2019.07/conda/envs/cryocare/bin/python",
+        "-m",
+        "ipykernel_launcher",
+        "-f",
+        "{connection_file}"
+    ],
+    "display_name": "Python 3",
+    "language": "python"
+}

Programming/anaconda/files/variants

@@ -1,3 +1,3 @@
 anaconda/2018.12	unstable	
+anaconda/2019.03	unstable	
 anaconda/2019.07	unstable	
-