mx/MX_Pmodule
1
0
Fork 0
Code Issues 1 Pull Requests Actions Packages Projects Releases Wiki Activity

merger conflicts resolved

Browse Source
This commit is contained in:
gsell
2018-05-15 11:25:42 +02:00
parent e5091f6df9 5961aea2cf
commit ff09d9f9d0
3 changed files with 77 additions and 63 deletions
Download Patch File Download Diff File Expand all files Collapse all files

8
Compiler/openmpi/3.0/variants.Linux
View File

@@ -3,6 +3,8 @@ openmpi/3.0.0 stable gcc/7.2.0
openmpi/3.0.0 stable gcc/7.3.0
openmpi/3.0.0 stable intel/17.4
openmpi/3.0.1 unstable gcc/5.5.0
openmpi/3.0.1 unstable gcc/6.4.0
openmpi/3.0.1 unstable gcc/7.3.0
openmpi/3.0.1 stable gcc/5.5.0
openmpi/3.0.1 stable gcc/6.4.0
openmpi/3.0.1 stable gcc/7.3.0
openmpi/3.0.1 unstable gcc/8.1.0
openpmi/3.0.1 unstable intel/18.2

131
MPI/elegant/README.md
View File

@@ -5,13 +5,10 @@
>
Go down for PSI build instructions!
Instructions to setup `epics/base`, `epics/extensions` compile `SDDS` and `elegant`:
Instructions to setup `epics/base`, `epics/extensions` compile `SDDS` and `elegant`. The instructions to build from source are almost at the end of the page:
https://www.aps.anl.gov/Accelerator-Operations-Physics/Software/installationGuide_Linux
>
Instructions to compile from source are almost at the end of the page!
Instructions to build `Pelegant`:
https://ops.aps.anl.gov/publish/Pelegant_manual/node2.html
@@ -42,86 +39,100 @@ https://ops.aps.anl.gov/publish/Pelegant_manual/node2.html
## Required Modules
```
module load gcc/7.3.0 gsl/2.4 mpich/3.2.1
module load gcc/7.3.0 gsl/2.4 OpenBLAS/0.2.20 mpich/3.2.1
```
## Set used versions
```
SDDS_VERSION=3.6.1
ELEGANT_VERSION=34.2.0
```
## Setup Environment
```
DOWNLOAD_DIR='/afs/psi.ch/software/Pmodules/distfiles/elegant'
PREFIX=/opt/psi/MPI/elegant/34.2.0/mpich/3.2.1/gcc/7.3.0
PREFIX=/opt/psi/MPI/elegant/${ELEGANT_VERSION}/${MPI}/${MPI_VERSION}/${COMPILER}/${COMPILER_VERSION}
export EPICS_BASE="${PREFIX}/epics/base"
export HOST_ARCH=linux-x86_64
export EPICS_HOST_ARCH=linux-x86_64
export RPN_DEFNS="${PREFIX}/RPN_DEFNS/defns.rpn
export RPN_DEFNS="${PREFIX}/RPN_DEFNS/defns.rpn"
export PERLLIB="${PREFIX}/lib/perl"
```
## Prepare build environment
EPICS base configuration
```
mkdir -p "${PREFIX}"
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/epics.base.configure.tar.gz"
cd epics/base
make
```
Prepare configuration files for EPICS build system
```
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/epics.extensions.configure.tar.gz
```
Prepare configuration files for elegant and other OAG apps
```
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/oag.apps.configure.tar.gz
```
## Base configuration for SDDS and elegant
```
ARGS=()
ARGS+=( "AR=ar -rc" )
ARGS+=( "LD=ld -r" )
ARGS+=( "RANLIB=ranlib" )
ARGS+=( "GNU_DIR=${GCC_DIR}" )
ARGS+=( "CLAPACK_LIB=${ATLAS_LIBRARY_DIR}" )
ARGS+=( "ATLAS_LIB=${ATLAS_LIBRARY_DIR}" )
ARGS+=( "ATLAS_INCLUDE=${ATLAS_INCLUDE_DIR}" )
ARGS+=( "SYSGSL=1" )
ARGS+=( "LAPACK=0" )
ARGS+=( "GFORTRAN=1" )
ARGS+=( "CLAPACK=1" )
ARGS+=( "EPICS_BASE=${PREFIX}/epics/base" )
ARGS+=( "GNU_BIN=$GCC_DIR/bin" )
ARGS+=( "LD=/usr/bin/ld" )
ARGS+=( "AR=/usr/bin/ar -rc" )
ARGS+=( "RANLIB=/usr/bin/ranlib" )
ARGS+=( "EPICS_BASE=${PREFIX}" )
ARGS+=( "INSTALL_LOCATION=${PREFIX}" )
ARGS+=( "INSTALL_LIB=${PREFIX}/lib" )
ARGS+=( "INSTALL_SHRLIB=${PREFIX}/lib" )
ARGS+=( "INSTALL_TCLLIB=${PREFIX}/lib" )
ARGS+=( "INSTALL_BIN=${PREFIX}/bin" )
ARGS+=( "SYSGSL=1")
```
== Compile SDDS
## Prepare base build environment
EPICS base configuration
```
cd ${PREFIX}/epics/extensions/src/SDDS/
make "${ARGS[@]}" OP_SYS_LDLIBS="-lgfortran -lquadmath -lf2c" -C png
make "${ARGS[@]}" OP_SYS_LDLIBS="-lgfortran -lquadmath -lf2c" -C pgapack
make "${ARGS[@]}" OP_SYS_LDLIBS="-lgfortran -lquadmath -lf2c"
make "${ARGS[@]}" OP_SYS_LDLIBS="-lgfortran -lquadmath -lf2c" MPI=1 -C SDDSlib
mkdir -p "${PREFIX}"
mkdir -p "${RPN_DEFNS%/*}"
cp "${DOWNLOAD_DIR}/defns.rpn" "${RPN_DEFNS}"
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/epics.base.configure.tar.gz"
cd epics/base
make -e "${ARGS[@]}"
```
== Compile elegant
## Unpack EPICS extensions and OAG apps configuration
```
ARGS+=( "TOOLS=${PREFIX}/bin")
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/epics.extensions.configure.tar.gz"
tar xvf "${DOWNLOAD_DIR}/oag.apps.configure.tar.gz"
cd "${PREFIX}/oag/apps/configure"
sed -i "s/clean::/clean:/" RULES_PYTHON
make -e "${ARGS[@]}"
```
>
You have to fix the `clean::` target in `${PREFIX}/oag/apps/configure/PYTHON_RULES`
## Build required tools and libraries from SDDS
```
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/SDDS.${SDDS_VERSION}.tar.gz"
cd "${PREFIX}/epics/extensions/src/SDDS/"
make -e "${ARGS[@]}" -C fftpack && \
make -e "${ARGS[@]}" -C lzma && \
make -e "${ARGS[@]}" -C matlib && \
make -e "${ARGS[@]}" -C mdbcommon && \
make -e "${ARGS[@]}" -C mdblib && \
make -e "${ARGS[@]}" -C mdbmth && \
make -e "${ARGS[@]}" -C meschach && \
make -e "${ARGS[@]}" -C namelist && \
make -e "${ARGS[@]}" -C pgapack && \
make -e "${ARGS[@]}" -C rpns/code && \
make -e "${ARGS[@]}" -C SDDSlib && \
make -e "${ARGS[@]}" -C SDDSlib clean
make "${ARGS[@]}" MPI=1 -C SDDSlib
```
## Compile (P)elegant
```
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/elegant.${ELEGANT_VERSION}.tar.gz"
PATH+=":${PREFIX}/bin"
cd "${PREFIX}/oag/apps/src/physics"
make "${ARGS[@]}" OP_SYS_LDLIBS="-lreadline -lncurses -lgfortran -lquadmath -lf2c -lm -lrt -ldl"
cd "${PREFIX}/oag/apps/src/xraylib"
make "${ARGS[@]}" OP_SYS_LDLIBS="-lreadline -lncurses -lgfortran -lquadmath -lf2c -lm -lrt -ldl"
cd "${PREFIX}/oag/apps/src/elegant"
make "${ARGS[@]}" OP_SYS_LDLIBS="-lreadline -lncurses -lgfortran -lquadmath -lf2c -lm -lrt -ldl"
make "${ARGS[@]}" OP_SYS_LDLIBS="-lreadline -lncurses -lgfortran -lquadmath -lf2c -lm -lrt -ldl" Pelegant
make "${ARGS[@]}" OP_SYS_LDLIBS="-lreadline -lncurses -lgfortran -lquadmath -lf2c -lm -lrt -ldl" -C elegantTools
make "${ARGS[@]}" OP_SYS_LDLIBS="-lreadline -lncurses -lgfortran -lquadmath -lf2c -lm -lrt -ldl" -C sddsbrightness
make -e "${ARGS[@]}"
make clean
make "${ARGS[@]}" Pelegant
```

1
Programming/gcc/8/variants Normal file
View File

@@ -0,0 +1 @@
gcc/8.1.0 unstable b:gmp/6.1.2 b:mpfr/4.0.1 b:mpc/1.1.0