Split slsReceiver into slsListener and slsReceiver

* less error mask

* removing error mask from slsDetector

* removed ErrorMask

* setonline, setreceiveornline bug fix

.clang-format

@@ -0,0 +1,6 @@
+BasedOnStyle: LLVM
+IndentWidth: 4
+
+UseTab: Never
+ColumnLimit: 100
+AlignConsecutiveAssignments: false 

.clang-tidy

@@ -0,0 +1,7 @@
+---
+Checks:          '*, -google-runtime-references, -hicpp-no-array-decay, -cppcoreguidelines-pro-bounds-array-to-pointer-decay, -cppcoreguidelines-pro-bounds-pointer-arithmetic, -fuchsia*,-readability-else-after-return,-readability-avoid-const-params-in-decls,-hicpp-signed-bitwise,-cppcoreguidelines-pro-bounds-constant-array-index,-llvm-header-guard,-readability-static-accessed-through-instance,-google-readability-todo'
+WarningsAsErrors: '*'
+HeaderFilterRegex: '.*'
+AnalyzeTemporaryDtors: false
+FormatStyle:     none
+...

.gitignore

@@ -6,6 +6,12 @@ bin/
 *.log
 *.out
 *.toc
+*.o
 build
 docs/
 RELEASE.txt
+
+
+*.pyc
+*/__pycache__/*
+

.gitmodules

@@ -0,0 +1,3 @@
+[submodule "python/pybind11"]
+	path = python/pybind11
+	url = https://github.com/pybind/pybind11.git

.travis.yml

@@ -0,0 +1,48 @@
+sudo: false
+
+language: cpp
+
+os: linux
+
+env: 
+  matrix: 
+     - CONDA_PY=3.6
+     - CONDA_PY=3.7
+
+
+dist: trusty
+
+install:
+  - sudo apt-get update
+  - ldd --version
+  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
+  - bash miniconda.sh -b -p $HOME/miniconda
+  - export PATH="$HOME/miniconda/bin:$PATH"
+  - rm -f miniconda.sh
+  - hash -r
+  - conda config --set always_yes yes --set changeps1 no
+  - conda config --add channels conda-forge
+  - conda config --add channels slsdetectorgroup
+  - conda update conda
+  - conda update --all
+  - conda install conda-build anaconda-client
+
+  # Useful for debugging any issues with conda
+  - conda info -a
+
+
+  # Replace dep1 dep2 ... with your dependencies
+  - conda create -q -n test-environment python=$CONDA_PY
+  - source activate test-environment
+  - conda-build .
+
+script:
+ - echo "No test scripts to be run!"
+
+
+deploy:
+  provider: script
+  script: find $HOME/miniconda/conda-bld/${TRAVIS_OS_NAME}-64 -name "*.tar.bz2" -exec anaconda -t $CONDA_TOKEN upload --force {} \;
+  on:
+    all_branches: true
+

CMakeLists.txt

@@ -1,57 +1,134 @@
 cmake_minimum_required(VERSION 2.8)
+# cmake_minimum_required(VERSION 3.5)
+project(slsDetectorPackage)
+include(cmake/project_version.cmake)
+
+# Include additional modules that are used unconditionally
+include(GNUInstallDirs)
+
+# If conda build, always set lib dir to 'lib'
+if($ENV{CONDA_BUILD})
+  set(CMAKE_INSTALL_LIBDIR "lib")
+endif()
+
+# Set lower / upper case project names
+string(TOUPPER "${PROJECT_NAME}" PROJECT_NAME_UPPER)
+string(TOLOWER "${PROJECT_NAME}" PROJECT_NAME_LOWER)
+
+# Set targets export name (used by slsDetectorPackage and dependencies)
+set(TARGETS_EXPORT_NAME "${PROJECT_NAME_LOWER}-targets")
+#set(namespace "${PROJECT_NAME}::")
+
 set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
-set (CALIBRATE OFF)
-
-option (USE_HDF5 "HDF5 File format" OFF)
-option (USE_TEXTCLIENT "Text Client" OFF)
-option (USE_RECEIVER "Receiver" OFF)
-option (USE_GUI "GUI" OFF)
 
 
-if (CMAKE_CXX_COMPILER_VERSION VERSION_GREATER 6.0)
-	set(CMAKE_CXX_FLAGS  "${CMAKE_CXX_FLAGS} -Wall -std=c++98 -Wno-misleading-indentation")
-else ()
-	set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++98")
-endif ()
+# Check if project is being used directly or via add_subdirectory
+set(SLS_MASTER_PROJECT OFF)
+if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_SOURCE_DIR)
+    set(SLS_MASTER_PROJECT ON)
+endif()
 
-find_package(Qt4)
-find_package(Qwt 6)
-find_package(CBF)
-find_package(Doxygen)
-find_package(PNG REQUIRED)
 
-if (USE_HDF5)
-	find_package(HDF5 1.10 COMPONENTS CXX)
-endif (USE_HDF5)
+
+option (SLS_USE_HDF5 "HDF5 File format" OFF)
+option (SLS_USE_TEXTCLIENT "Text Client" OFF)
+option (SLS_USE_RECEIVER "Receiver High Level API" OFF)
+option (SLS_USE_LISTENER "Receiver Low Level API" OFF)
+option (SLS_USE_GUI "GUI" OFF)
+option (SLS_USE_TESTS "TESTS" ON)
+option (SLS_USE_INTEGRATION_TESTS "Integration Tests" ON)
+option(SLS_USE_SANITIZER "Sanitizers for debugging" OFF)
+option(SLS_USE_PYTHON "Python bindings" OFF)
+
+set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
+
+#Testing for minimum version for compilers
+if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
+    # clang does not support -Wno-misleading-indentation 
+    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 3.2)
+        message(FATAL_ERROR "Clang version must be at least 3.2!")
+    endif()
+elseif ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
+    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 4.8)
+            message(FATAL_ERROR "GCC version must be at least 4.8!")
+    endif()
+    set(CMAKE_CXX_FLAGS  "${CMAKE_CXX_FLAGS} -Wno-misleading-indentation -Wno-stringop-truncation -Wno-class-memaccess")
+endif()
+
+# Suppressed warnings in GCC
+# -Wno-stringop-truncation happens when we do sls::strcpy_safe truncates string instead of overwrite buffer
+# -Wno-class-memaccess - on memcpy in rapidjson should be investigated upgrade implementation?
+# -Wno-misleading-indentation - until clang format
+
+#set (CMAKE_CXX_STANDARD 11)
+#set (CMAKE_CXX_STANDARD_REQUIRED ON)
+set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -std=c++11 ")
+
+if(SLS_USE_SANITIZER)
+    set (CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS_DEBUG} -fno-omit-frame-pointer -fsanitize=address,undefined")
+    set (CMAKE_LINKER_FLAGS "${CMAKE_LINKER_FLAGS_DEBUG} -fno-omit-frame-pointer -fsanitize=address,undefiend")
+endif()
+
 
 set(CMAKE_POSITION_INDEPENDENT_CODE ON)
-
 set(CMAKE_INSTALL_RPATH "$ORIGIN")
 set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE)
 
 
-if (USE_TEXTCLIENT)
-       add_subdirectory(slsDetectorSoftware)
-endif (USE_TEXTCLIENT)
 
-if (USE_RECEIVER)
-       add_subdirectory(slsReceiverSoftware)
-       add_subdirectory(manual/manual-api)    
-endif (USE_RECEIVER)
-               
-               
-if (USE_GUI)   
-       if (QT4_FOUND AND QWT_FOUND)
-       add_subdirectory(slsDetectorGui)
-       endif()
-endif (USE_GUI)
+find_package(Doxygen)
+find_package(ZeroMQ 4 REQUIRED)
 
 
-if (CALIBRATE)
-    if (DEFINED ENV{ROOTSYS})
-        find_package(ROOT)
-        if (ROOT_FOUND)
-            add_subdirectory(calibrationWizards)
-        endif()
+# Support library containing functionallity common to 
+# detector and receiver
+add_subdirectory(slsSupportLib)
+
+if (SLS_USE_TEXTCLIENT)
+    add_subdirectory(slsDetectorSoftware)
+endif (SLS_USE_TEXTCLIENT)
+
+# This logic could be moved in slsReceiverSoftware/CMakeLists.txt
+if (SLS_USE_RECEIVER)
+    set(SLS_USE_LISTENER ON)
+    if (SLS_USE_HDF5)
+        find_package(HDF5 1.10 COMPONENTS CXX REQUIRED)
+    endif (SLS_USE_HDF5)
+    add_subdirectory(slsReceiverSoftware/slsReceiver)
+    add_subdirectory(manual/manual-api)    
+endif (SLS_USE_RECEIVER)
+
+if (SLS_USE_LISTENER)
+    add_subdirectory(slsReceiverSoftware/slsListener)
+endif (SLS_USE_LISTENER)
+
+if (SLS_USE_GUI)   
+    find_package(Qt4 REQUIRED)
+    find_package(Qwt 6 REQUIRED)
+    if (QT4_FOUND AND QWT_FOUND)
+        add_subdirectory(slsDetectorGui)
     endif()
-endif(CALIBRATE)
+endif (SLS_USE_GUI)
+
+if (SLS_USE_TESTS)
+    enable_testing()
+endif(SLS_USE_TESTS)
+
+if (SLS_USE_INTEGRATION_TESTS)
+    add_subdirectory(integrationTests)
+endif (SLS_USE_INTEGRATION_TESTS)
+
+if (SLS_USE_PYTHON)
+    add_subdirectory(python)
+endif(SLS_USE_PYTHON)
+
+
+if(SLS_MASTER_PROJECT)
+    # Set install dir CMake packages
+    set(CMAKE_INSTALL_DIR ${CMAKE_INSTALL_DATADIR}/cmake/sls)
+    # Set the list of exported targets
+    set(PROJECT_LIBRARIES slsSupportLib slsDetectorShared slsReceiverShared)
+    # Generate and install package config file and version
+    include(cmake/package_config.cmake)
+endif()
+

Makefile

@@ -1,232 +0,0 @@
-# do not change below this line#
-
-# Include common definitions
-include Makefile.include
-
-INSTALLROOT	?=	$(PWD)
-BINDIR	?=	$(INSTALLROOT)/bin
-DOCDIR	?=	$(INSTALLROOT)/manual/docs
-LIBDIR	?=	$(INSTALLROOT)/bin
-INCDIR	?=	$(INSTALLROOT)/include
-DETAILDOC	?=	$(INSTALLROOT)/docs
- 
-WD				=	$(shell pwd)
-LIBRARYDIR		=	$(WD)/slsDetectorSoftware
-LIBRARYRXRDIR 		= 	$(WD)/slsReceiverSoftware
-CLIENTDIR		=	$(LIBRARYDIR)/slsDetectorClient
-GUIDIR			=	$(WD)/slsDetectorGui
-RECEIVERDIR		=	$(LIBRARYRXRDIR)
-CALWIZDIR		=	$(WD)/calibrationWizards
-MANDIR			=	$(WD)/manual
-CALIBDIR		=	$(WD)/slsDetectorCalibration
-
-TABSPACE		:=	"\t"
-
- 
-INCLUDES=-I. -I$(LIBRARYDIR)/commonFiles -I$(LIBRARYDIR)/slsDetector -I$(LIBRARYDIR)/usersFunctions -I$(LIBRARYDIR)/multiSlsDetector -I$(LIBRARYDIR)/slsDetectorUtils -I$(LIBRARYDIR)/slsDetectorCommand -I$(LIBRARYDIR)/slsDetectorAnalysis -I$(LIBRARYDIR)/slsReceiverInterface  -I$(LIBRARYRXRDIR)/include -I$(LIBRARYDIR)/threadFiles -I$(LIBRARYDIR)/sharedMemory -I$(ASM)
-
-INCLUDESRXR += -I. -I$(LIBRARYRXRDIR)/include -I$(CALIBDIR) -I$(ASM) 
-#LIBFLAGRXR += 
-
-$(info )
-$(info #######################################)
-$(info #   In slsDetectorsPackage Makefile   #)
-$(info #######################################)
-$(info )
-
-
-.PHONY: all nonstatic static lib libreceiver textclient receiver gui stextclient sreceiver
-
-#all: lib textclient  receiver gui 
-all: textclient  receiver gui 
-
-nonstatic: lib libreceiver textclient receiver  gui 
-
-static: lib  libreceiver stextclient sreceiver gui 
-
-
-lib:
-	cd $(LIBRARYDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(LIBDIR)' LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
-
-libreceiver:
-	cd $(LIBRARYRXRDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(LIBDIR)' LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
-
-
-stextclient: slsDetectorClient_static
-
-slsDetectorClient: textclient
-
-slsDetectorClient_static: #lib
-	cd  $(CLIENTDIR) && $(MAKE) static_clients FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)' LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
-	@echo ""
-	@echo "#######################################"
-	@echo "# Back in slsDetectorPackage Makefile #"
-	@echo "#######################################"
-	@echo ""
-		
-textclient: #lib
-	cd  $(CLIENTDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
-	@echo ""
-	@echo "#######################################"
-	@echo "# Back in slsDetectorPackage Makefile #"
-	@echo "#######################################"
-	@echo ""
-	
-slsReceiver: receiver
-
-slsReceiver_static: receiver
-
-receiver: #libreceiver
-#	cd  $(RECEIVERDIR) && $(MAKE) receiver FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
-	cd  $(RECEIVERDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
-	@echo ""
-	@echo "#######################################"
-	@echo "# Back in slsDetectorPackage Makefile #"
-	@echo "#######################################"
-	@echo ""
-		
-sreceiver: #libreceiver
-	cd  $(RECEIVERDIR) && $(MAKE)  static_receiver FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
-	@echo ""
-	@echo "#######################################"
-	@echo "# Back in slsDetectorPackage Makefile #"
-	@echo "#######################################"
-	@echo ""
-
-slsDetectorGUI: #lib
-	cd  $(GUIDIR) && $(MAKE) DESTDIR='$(BINDIR)' LIBRARYDIR='$(LIBRARYDIR)' INCLUDES='$(INCLUDES)' LDFLAGDET='$(LDFLAGDETONLY)' LIBDIR='$(LIBDIR)'
-	@echo ""
-	@echo "#######################################"
-	@echo "# Back in slsDetectorPackage Makefile #"
-	@echo "#######################################"
-	@echo ""
-	
-calWiz: 
-	cd  $(CALWIZDIR) && $(MAKE)  DESTDIR=$(BINDIR) #FLAGS=$(FLAGS)  LDFLAGDET=$(LDFLAGDET) INCLUDES=$(INCLUDES)
-
-
-
-gui: slsDetectorGUI
-
-
-doc:
-	$(shell test -d $(DOCDIR) || mkdir -p $(DOCDIR))
-	cd manual && make all DESTDIR=$(DOCDIR)
-
-htmldoc:
-	make doc
-	$(shell test -d $(DOCDIR) || mkdir -p $(DOCDIR))
-	cd manual && make html DESTDIR=$(DOCDIR)
-	
-detaildoc: createdocs docspdf docshtml removedocs
-
-createdocs: $(LIBRARYDIR)/doxy.config
-	doxygen $(LIBRARYDIR)/doxy.config	
-
-docspdf: 
-	cd slsDetectorPackageDocs/latex && make 
-	$(shell test -d $(DETAILDOC) || mkdir -p $(DETAILDOC))
-	$(shell test -d $(DETAILDOC)/pdf || mkdir -p $(DETAILDOC)/pdf)
-	mv slsDetectorPackageDocs/latex/refman.pdf $(DETAILDOC)/pdf/slsDetectorPackageDocs.pdf
-
-docshtml: 
-	$(shell test -d $(DETAILDOC) || mkdir -p $(DETAILDOC))
-	$(shell test -d $(DETAILDOC)/html || mkdir -p $(DETAILDOC)/html)
-	$(shell test -d $(DETAILDOC)/html/slsDetectorPackageDocs && rm -r $(DETAILDOC)/html/slsDetectorPackageDocs)
-	mv slsDetectorPackageDocs/html $(DETAILDOC)/html/slsDetectorPackageDocs
-	
-removedocs:
-	rm -rf 	slsDetectorPackageDocs;
-
-
-clean:
-	cd $(BINDIR) && rm -rf sls_detector_* slsDetectorGui slsReceiver angularCalibrationWizard energyCalibrationWizard 
-	cd $(LIBDIR) && rm -rf libSlsDetector.so libSlsDetector.a libSlsReceiver.so libSlsReceiver.a 
-	cd $(LIBRARYDIR) && $(MAKE) clean 
-	cd $(LIBRARYRXRDIR) && $(MAKE) clean 
-	cd $(CLIENTDIR) && $(MAKE) clean
-	cd $(GUIDIR) && $(MAKE) clean
-	cd $(CALWIZDIR) && $(MAKE) clean
-	cd manual && $(MAKE) clean
-	cd $(DOCDIR) && rm -rf * 
-	rm -rf 	slsDetectorPackageDocs;
-	rm -rf $(DETAILDOC)
-
-
-#install_lib: 
-#	cd $(LIBRARYDIR) && $(MAKE) install DESTDIR=$(LIBDIR) INCLUDES=$(INCLUDES)
-#	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR)
-
-mythen_virtual:
-	cd $(LIBRARYDIR) && $(MAKE) mythenVirtualServer DESTDIR=$(BINDIR)
-
-
-gotthard_virtual:
-	cd $(LIBRARYDIR) && $(MAKE) gotthardVirtualServer DESTDIR=$(BINDIR)
-
-
-install_client: textclient slsReceiver
-
-install_gui: gui
-
-confinstall:
-	make conf;\
-	make install
-
-install_lib: 
-	make lib;\
-	make libreceiver; \
-	make textclient; \
-	make slsReceiver; \
-	make doc; \
-	make htmldoc; \
-	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR); \
-	cd $(LIBRARYRXRDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);
-
-install: 
-	make install_lib; \
-	make gui; \
-	make calWiz; \
-	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);\
-	cd $(LIBRARYRXRDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);
-
-conf:
-	set -e; \
-	. ./configure; \
-	@echo "INSTALLROOT is $(INSTALLROOT)"
-	@echo "BINDIR is $(BINDIR)"
-	@echo "LIBDIR is $(LIBDIR)"
-	@echo "INCDIR is $(INCDIR)"
-	@echo "DOCDIR is $(DOCDIR)"
-
-
-help:
-	@echo "Targets:"
-	@echo "make all 		compile library,  text clients, data reciever"
-	@echo "make lib 		compile library"
-	@echo "make libreceiver 		compile receiver library"
-	@echo "make textclient		compile the slsDetectorClient dynamically linking the libraries"
-	@echo "make stextclient 		compile slsDetectorClient statically linking the libraries"
-	@echo "make receiver		compile the slsReciever dynamically linking the libraries"
-	@echo "make sreceiver		compile the slsReciever statically linking the libraries"
-	@echo "make gui			compile slsDetectorGUI - requires a working Qt4 and Qwt installation"
-	@echo "make calWiz 		compile the calibration wizards - requires a working Root installation"
-	@echo "make doc			compile pdf documentation"
-	@echo "make htmldoc		compile html (and pdf) documentation"
-	@echo "make install_lib         installs the libraries, the text clients, the documentation and the includes for the API"
-	@echo "make install             installs all software, including the gui, the cal wizards and the includes for the API"
-	@echo "make confinstall         installs all software, including the gui, the cal wizards and the includes for the API, prompting for the install paths"
-	@echo "make clean              	remove object files and executables"
-	@echo "make help               	lists possible targets"
-	@echo ""
-	@echo ""
-	@echo "Makefile variables"
-	@echo "DEBUG=1,2		 set debug level to 1 (VERBOSE) or 2 (VERYVERBOSE)"
-	@echo ""
-	@echo ""
-	@echo "Variables -  to change them run <source configure> :"
-	@echo "INSTALLROOT=<yourdir>:    installation root di	r, default $PWD"
-	@echo "BINDIR=<yourbin>:         binary installation dir below INSTALLROOT, default bin"
-	@echo "LIBDIR=<yourlib>:         library installation dir below INSTALLROOT, default lib"
-	@echo "INCDIR=<yourincludes>:    header installation dir below INSTALLROOT, default include"
-	@echo "DOCDIR=<yourdoc>:         documentation installation dir below INSTALLROOT, default doc"

Makefile.include

@@ -1,58 +0,0 @@
-##############################################################
-# Generic 
-##############################################################
-
-CC = g++
-CXX = $(CC)
-ASM=$(shell echo "/lib/modules/`uname -r`/build/include")
-LDFLAGDETONLY = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsDetector 
-LDFLAGDET = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsDetector -L/usr/lib64/ -pthread
-LDFLAGRXR = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L/usr/lib64/ -pthread
-FLAGS= -Wall  -pthread  #-DEIGER_DEBUG2
-# -DVERBOSE 
-
-# Setting up the verbose flags
-ifeq ($(DEBUG),1)
-     FLAGS = -Wall -DVERBOSE
-endif
-ifeq ($(DEBUG),2)
-     FLAGS = -Wall -DVERYVERBOSE
-endif
-
-##############################################################
-# HDF5 specific. Set this to yes, if you want to compile
-# HDF5 code: in this case, you need HDF5 libraries
-##############################################################   
-
-HDF5 = no
-HDF5_DIR = /opt/hdf5v1.10.0
-
-ifeq ($(HDF5),yes)
-	LDFLAGRXR = -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L$(HDF5_DIR)/lib  -Wl,-rpath=$(HDF5_DIR)/lib -lhdf5 -lhdf5_cpp -lsz -lz -DHDF5C -L/usr/lib64/ -pthread
-	INCLUDESRXR = -I$(HDF5_DIR)/include
-endif	
-
-
-##############################################################
-# ROOTSLS specific. Set this to yes, if you want to compile
-# ROOTSLS code: in this case, you need also root libraries
-##############################################################   
-
-ROOTSLS = no
-
-ROOTFLAGS = $(shell root-config --cflags --glibs) -DMYROOT1   #-DALLFILE_DEBUG #-DMYROOT1 
-
-ifeq ($(ROOTSLS),yes)
-     LDFLAGRXR = -L$(LIBDIR) -lSlsReceiver $(ROOTFLAGS) -DROOTSLS
-endif
-
-
-define colorecho
-      @tput setaf 6
-      @echo $1
-      @tput sgr0
-endef
-
-
-
-

README.md

@@ -2,7 +2,7 @@
 Detailed documentation can be found on the [official site.](https://www.psi.ch/detectors/users-support)
 
 ### Binaries
-Documentation to obtain the binaries via the conda package is available [here.](https://github.com/slsdetectorgroup/sls_detector_software)
+Documentation to obtain the binaries via the conda package is available for [lib](https://github.com/slsdetectorgroup/sls_detector_lib) and [gui](https://github.com/slsdetectorgroup/sls_detector_gui)
 
 ### Source code
 One can also obtain the source code from this repository and compile while realizing the setup dependencies as required.
@@ -19,7 +19,7 @@ Requirements: Qt 4.8 and Qwt 6.0
 ```
 If either of them does not exist, the GUI client will not be built.
 
-* Calibration wizards<br>
+* Advanced user Calibration wizards<br>
 Requirements: ROOT
 ```
     export ROOTSYS=/usr/local/root-5.34
@@ -43,6 +43,7 @@ Usage: [-c] [-b] [-h] [-d HDF5 directory] [-j]<br>
  * -r: Build/Rebuilds only receiver<br>
  * -g: Build/Rebuilds only gui<br>
  * -j: Number of threads to compile through<br>
+ * -e: Debug mode
  
 Basic Option:
 ./cmk.sh -b
@@ -74,17 +75,17 @@ Use cmake to create out-of-source builds, by creating a build folder parallel to
     $ cd ..
     $ mkdir slsDetectorPackage-build
     $ cd slsDetectorPackage-build
-    $ cmake ../slsDetectorPackage  -DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=OFF 
+    $ cmake ../slsDetectorPackage  -DCMAKE_BUILD_TYPE=Debug -DSLS_USE_HDF5=OFF 
     $ make
 ```
 
 Use the following as an example to compile statically and using specific hdf5 folder
 ```
-    $ HDF5_ROOT=/opt/hdf5v1.10.0 cmake ../slsDetectorPackage -DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=ON
+    $ HDF5_ROOT=/opt/hdf5v1.10.0 cmake ../slsDetectorPackage -DCMAKE_BUILD_TYPE=Debug -DSLS_USE_HDF5=ON
  ```  
 After compiling, the libraries and executables will be found at `bin` directory
 ```
     $ ls bin/
     gui_client  libSlsDetector.a  libSlsDetector.so  libSlsReceiver.a  libSlsReceiver.so
-    sls_detector_acquire  sls_detector_get  slsDetectorGui  sls_detector_help  sls_detector_put  slsReceiver
+    sls_detector_acquire  sls_detector_get  slsDetectorGui  sls_detector_help  sls_detector_put  slsReceiver slsMultiReceiver
 ```

RELEASE.txt

@@ -1 +0,0 @@
-

cleansharedmemory.sh

@@ -1 +0,0 @@
-rm /dev/shm/slsDetectorPackage*;

cmake/FindZeroMQ.cmake

@@ -0,0 +1,112 @@
+
+# This file is originally from https://github.com/zeromq/azmq and distributed 
+# under Boost Software Lincese 1.0
+# Boost Software License - Version 1.0 - August 17th, 2003
+
+# Permission is hereby granted, free of charge, to any person or organization
+# obtaining a copy of the software and accompanying documentation covered by
+# this license (the "Software") to use, reproduce, display, distribute,
+# execute, and transmit the Software, and to prepare derivative works of the
+# Software, and to permit third-parties to whom the Software is furnished to
+# do so, all subject to the following:
+
+# The copyright notices in the Software and this entire statement, including
+# the above license grant, this restriction and the following disclaimer,
+# must be included in all copies of the Software, in whole or in part, and
+# all derivative works of the Software, unless such copies or derivative
+# works are solely in the form of machine-executable object code generated by
+# a source language processor.
+
+# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+# FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
+# SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
+# FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
+# ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
+# DEALINGS IN THE SOFTWARE.
+# --------------------------------------------------------------------------------
+
+# Find ZeroMQ Headers/Libs
+
+# Variables
+# ZMQ_ROOT - set this to a location where ZeroMQ may be found
+#
+# ZeroMQ_FOUND - True of ZeroMQ found
+# ZeroMQ_INCLUDE_DIRS - Location of ZeroMQ includes
+# ZeroMQ_LIBRARIES - ZeroMQ libraries
+
+include(FindPackageHandleStandardArgs)
+
+if (NOT ZMQ_ROOT)
+    set(ZMQ_ROOT "$ENV{ZMQ_ROOT}")
+endif()
+
+if (NOT ZMQ_ROOT)
+    find_path(_ZeroMQ_ROOT NAMES include/zmq.h)
+else()
+    set(_ZeroMQ_ROOT "${ZMQ_ROOT}")
+endif()
+
+find_path(ZeroMQ_INCLUDE_DIRS NAMES zmq.h HINTS ${_ZeroMQ_ROOT}/include)
+
+if (ZeroMQ_INCLUDE_DIRS)
+    set(_ZeroMQ_H ${ZeroMQ_INCLUDE_DIRS}/zmq.h)
+
+    function(_zmqver_EXTRACT _ZeroMQ_VER_COMPONENT _ZeroMQ_VER_OUTPUT)
+        set(CMAKE_MATCH_1 "0")
+        set(_ZeroMQ_expr "^[ \\t]*#define[ \\t]+${_ZeroMQ_VER_COMPONENT}[ \\t]+([0-9]+)$")
+        file(STRINGS "${_ZeroMQ_H}" _ZeroMQ_ver REGEX "${_ZeroMQ_expr}")
+        string(REGEX MATCH "${_ZeroMQ_expr}" ZeroMQ_ver "${_ZeroMQ_ver}")
+        set(${_ZeroMQ_VER_OUTPUT} "${CMAKE_MATCH_1}" PARENT_SCOPE)
+    endfunction()
+
+    _zmqver_EXTRACT("ZMQ_VERSION_MAJOR" ZeroMQ_VERSION_MAJOR)
+    _zmqver_EXTRACT("ZMQ_VERSION_MINOR" ZeroMQ_VERSION_MINOR)
+    _zmqver_EXTRACT("ZMQ_VERSION_PATCH" ZeroMQ_VERSION_PATCH)
+
+    message(STATUS "ZeroMQ version: ${ZeroMQ_VERSION_MAJOR}.${ZeroMQ_VERSION_MINOR}.${ZeroMQ_VERSION_PATCH}")
+
+    # We should provide version to find_package_handle_standard_args in the same format as it was requested,
+    # otherwise it can't check whether version matches exactly.
+    if (ZeroMQ_FIND_VERSION_COUNT GREATER 2)
+        set(ZeroMQ_VERSION "${ZeroMQ_VERSION_MAJOR}.${ZeroMQ_VERSION_MINOR}.${ZeroMQ_VERSION_PATCH}")
+    else()
+        # User has requested ZeroMQ version without patch part => user is not interested in specific patch =>
+        # any patch should be an exact match.
+        set(ZeroMQ_VERSION "${ZeroMQ_VERSION_MAJOR}.${ZeroMQ_VERSION_MINOR}")
+    endif()
+
+    if (NOT ${CMAKE_CXX_PLATFORM_ID} STREQUAL "Windows")
+        find_library(ZeroMQ_LIBRARIES NAMES zmq HINTS ${_ZeroMQ_ROOT}/lib)
+    else()
+        find_library(
+            ZeroMQ_LIBRARY_RELEASE
+            NAMES
+                libzmq
+                "libzmq-${CMAKE_VS_PLATFORM_TOOLSET}-mt-${ZeroMQ_VERSION_MAJOR}_${ZeroMQ_VERSION_MINOR}_${ZeroMQ_VERSION_PATCH}"
+            HINTS
+                ${_ZeroMQ_ROOT}/lib
+            )
+
+        find_library(
+            ZeroMQ_LIBRARY_DEBUG
+            NAMES
+                libzmq_d
+                "libzmq-${CMAKE_VS_PLATFORM_TOOLSET}-mt-gd-${ZeroMQ_VERSION_MAJOR}_${ZeroMQ_VERSION_MINOR}_${ZeroMQ_VERSION_PATCH}"
+            HINTS
+                ${_ZeroMQ_ROOT}/lib)
+
+        # On Windows we have to use corresponding version (i.e. Release or Debug) of ZeroMQ because of `errno` CRT global variable
+        # See more at http://www.drdobbs.com/avoiding-the-visual-c-runtime-library/184416623
+        set(ZeroMQ_LIBRARIES optimized "${ZeroMQ_LIBRARY_RELEASE}" debug "${ZeroMQ_LIBRARY_DEBUG}")
+    endif()
+endif()
+
+find_package_handle_standard_args(ZeroMQ FOUND_VAR ZeroMQ_FOUND
+    REQUIRED_VARS ZeroMQ_INCLUDE_DIRS ZeroMQ_LIBRARIES
+    VERSION_VAR ZeroMQ_VERSION)
+
+if (ZeroMQ_FOUND)
+    mark_as_advanced(ZeroMQ_INCLUDE_DIRS ZeroMQ_LIBRARIES ZeroMQ_VERSION
+        ZeroMQ_VERSION_MAJOR ZeroMQ_VERSION_MINOR ZeroMQ_VERSION_PATCH)
+endif()

cmake/package_config.cmake

@@ -0,0 +1,31 @@
+# This cmake code creates the configuration that is found and used by
+# find_package() of another cmake project
+
+# get lower and upper case project name for the configuration files
+
+# configure and install the configuration files
+include(CMakePackageConfigHelpers)
+
+configure_package_config_file(
+  "${CMAKE_SOURCE_DIR}/cmake/project-config.cmake.in"
+  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config.cmake"
+  INSTALL_DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME_LOWER}
+  PATH_VARS CMAKE_INSTALL_DIR)
+
+write_basic_package_version_file(
+  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config-version.cmake"
+  VERSION ${PROJECT_VERSION}
+  COMPATIBILITY SameMajorVersion)
+
+install(FILES
+  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config.cmake"
+  "${PROJECT_BINARY_DIR}/${PROJECT_NAME_LOWER}-config-version.cmake"
+  COMPONENT devel
+  DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME_LOWER})
+
+if (PROJECT_LIBRARIES OR PROJECT_STATIC_LIBRARIES)
+  install(
+    EXPORT "${TARGETS_EXPORT_NAME}"
+    FILE ${PROJECT_NAME_LOWER}-targets.cmake
+    DESTINATION ${CMAKE_INSTALL_LIBDIR}/cmake/${PROJECT_NAME_LOWER})
+endif ()

cmake/project-config.cmake.in

@@ -0,0 +1,24 @@
+# Config file for @PROJECT_NAME_LOWER@
+#
+# It defines the following variables:
+#
+# @PROJECT_NAME_UPPER@_INCLUDE_DIRS     - include directory
+# @PROJECT_NAME_UPPER@_LIBRARIES        - all dynamic libraries
+# @PROJECT_NAME_UPPER@_STATIC_LIBRARIES - all static libraries
+
+@PACKAGE_INIT@
+
+include(CMakeFindDependencyMacro)
+
+set(SLS_USE_HDF5 "@SLS_USE_HDF5@")
+
+# Add optional dependencies here
+find_dependency(Threads)
+if (SLS_USE_HDF5)
+    find_dependency(HDF5)
+endif ()
+
+set_and_check(@PROJECT_NAME_UPPER@_CMAKE_INCLUDE_DIRS "@PACKAGE_CMAKE_INSTALL_DIR@")
+
+include("${CMAKE_CURRENT_LIST_DIR}/@TARGETS_EXPORT_NAME@.cmake")
+check_required_components("@PROJECT_NAME@")

cmake/project_version.cc.in

@@ -0,0 +1,14 @@
+#include "project_version.h"
+/// project version as major.minor.patch string
+const char* @PROJECT_NAME@_runtime_project_version(){ return "@PROJECT_VERSION@"; }
+/// package version as string, possibly with git commit: v1.2.3+4+g56789abc
+const char* @PROJECT_NAME@_runtime_package_version(){ return "@PACKAGE_VERSION@"; }
+/// project version as integer: major * 10000 + minor * 100 + patch
+int @PROJECT_NAME@_runtime_version_int()  { return @PROJECT_VERSION_INT@; }
+/// project version as integer: major
+int @PROJECT_NAME@_runtime_version_major(){ return @PACKAGE_VERSION_MAJOR@; }
+/// project version as integer: minor
+int @PROJECT_NAME@_runtime_version_minor(){ return @PACKAGE_VERSION_MINOR@; }
+/// project version as integer: patch
+int @PROJECT_NAME@_runtime_version_patch(){ return @PACKAGE_VERSION_PATCH@; }
+

cmake/project_version.cmake

@@ -0,0 +1,154 @@
+#
+# Sets PROJECT_VERSION and PACKAGE_VERSION
+#
+
+# Don't set PROJECT_VERSION to empty string when no VERSION is given to project() command.
+#if(POLICY CMP0048)
+#  cmake_policy(SET CMP0048 OLD)
+#endif()
+
+# Split a version number into separate components
+# version the version number to split
+# major variable name to store the major version in
+# minor variable name to store the minor version in
+# patch variable name to store the patch version in
+# extra variable name to store a version suffix in
+function(version_split version major minor patch extra)
+    string(REGEX MATCH "([0-9]+)\\.([0-9]+)\\.([0-9]+)(.*)?" version_valid ${version})
+    if(version_valid)
+        string(REGEX REPLACE "([0-9]+)\\.([0-9]+)\\.([0-9]+)(.*)?" "\\1;\\2;\\3;\\4" VERSION_MATCHES ${version})
+        list(GET VERSION_MATCHES 0 version_major)
+        set(${major} ${version_major} PARENT_SCOPE)
+        list(GET VERSION_MATCHES 1 version_minor)
+        set(${minor} ${version_minor} PARENT_SCOPE)
+        list(GET VERSION_MATCHES 2 version_patch)
+        set(${patch} ${version_patch} PARENT_SCOPE)
+        list(GET VERSION_MATCHES 3 version_extra)
+        set(${extra} ${version_extra} PARENT_SCOPE)
+    else(version_valid)
+        message(AUTHOR_WARNING "Bad version ${version}; falling back to 0 (have you made an initial release?)")
+        set(${major} "0" PARENT_SCOPE)
+        set(${minor} "0" PARENT_SCOPE)
+        set(${patch} "0" PARENT_SCOPE)
+        set(${extra} "" PARENT_SCOPE)
+    endif(version_valid)
+endfunction(version_split)
+
+##############################
+# get PROJECT_VERSION from git
+##############################
+find_program(GIT_CMD git)
+mark_as_advanced(GIT_CMD)
+if (GIT_CMD)
+    execute_process(COMMAND ${GIT_CMD} rev-parse --show-toplevel
+            WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
+            OUTPUT_VARIABLE GIT_TOPLEVEL
+            ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE)
+endif()
+if (GIT_CMD AND NOT "${GIT_TOPLEVEL}" STREQUAL "")
+    execute_process(COMMAND ${GIT_CMD} rev-parse --short HEAD
+            WORKING_DIRECTORY ${GIT_TOPLEVEL}
+            OUTPUT_VARIABLE GIT_SHA1
+            OUTPUT_STRIP_TRAILING_WHITESPACE)
+    #message(STATUS "GIT_SHA1: " ${GIT_SHA1})
+    execute_process(COMMAND ${GIT_CMD} describe --match "*[0-9].[0-9]*" HEAD
+            WORKING_DIRECTORY ${GIT_TOPLEVEL}
+            OUTPUT_VARIABLE GIT_DESCRIBE
+            ERROR_QUIET OUTPUT_STRIP_TRAILING_WHITESPACE)
+    #message(STATUS "GIT_DESCRIBE: " ${GIT_DESCRIBE})
+
+    if (GIT_DESCRIBE)
+        string(REGEX REPLACE "v?([0-9.]+).*" "\\1" GIT_VERSION ${GIT_DESCRIBE})
+        message(STATUS "GIT_VERSION: " ${GIT_VERSION})
+
+        # as package version we use the full version from git describe: 1.7.1+7+ge324c81
+        if (GIT_DESCRIBE MATCHES ".*-g.*")
+            # convert a git describe string to usable debian version, e.g. v1.7.1-7-ge324c81 to 1.7.1+7+ge324c81
+            string(REGEX REPLACE "v?([0-9]*.[0-9.]*).*-([0-9]*)-([a-g0-9]*)" "\\1+\\2+\\3" GIT_FULL_VERSION ${GIT_DESCRIBE})
+        else()
+            # current HEAD is git tag (i.e. releaase), directly use the version
+            set(GIT_FULL_VERSION ${GIT_VERSION})
+        endif()
+    else ()
+        # no (suitable) tag found
+        set(GIT_VERSION "0.0.0")
+        # get number of commits in repo
+        execute_process(COMMAND ${GIT_CMD} rev-list --count HEAD
+                WORKING_DIRECTORY ${GIT_TOPLEVEL}
+                OUTPUT_VARIABLE GIT_COMMIT_COUNT
+                OUTPUT_STRIP_TRAILING_WHITESPACE)
+        set(GIT_FULL_VERSION 0.0.0+${GIT_COMMIT_COUNT}+g${GIT_SHA1})
+    endif ()
+endif ()
+
+# get version from package.xml if it exists
+if (EXISTS "${PROJECT_SOURCE_DIR}/package.xml")
+    file(STRINGS "${PROJECT_SOURCE_DIR}/package.xml" PACKAGE_XML_VERSION_LINE REGEX <version>[0-9.]*</version>)
+    string(REGEX REPLACE .*<version>\([0-9.]*\)</version>.* \\1 PACKAGE_XML_VERSION "${PACKAGE_XML_VERSION_LINE}")
+    MESSAGE(STATUS "PACKAGE_XML_VERSION: " ${PACKAGE_XML_VERSION})
+endif ()
+
+# set version (if not already manually specified)
+# check versions from different sources and set actually used version
+if (NOT PROJECT_VERSION)
+    # set PROJECT_VERSION to MAJOR.MINOR.PATCH
+    # PACKAGE_VERSION can have extra info
+    if (GIT_VERSION)
+        set(PROJECT_VERSION ${GIT_VERSION})
+        set(PACKAGE_VERSION ${GIT_FULL_VERSION})
+    elseif (PACKAGE_XML_VERSION)
+        set(PROJECT_VERSION ${PACKAGE_XML_VERSION})
+        set(PACKAGE_VERSION ${PROJECT_VERSION})
+    else ()
+        message(WARNING "PROJECT_VERSION not set. Defaulting to 0.0.0")
+        set(PROJECT_VERSION "0.0.0")
+    endif ()
+endif ()
+if (NOT PACKAGE_VERSION)
+    message(WARNING "PACKAGE_VERSION not set! Falling back to (${PROJECT_VERSION})")
+    set(PACKAGE_VERSION ${PROJECT_VERSION})
+endif ()
+
+# warn if versions don't match
+if (GIT_VERSION AND NOT GIT_VERSION MATCHES ${PROJECT_VERSION})
+    message(WARNING "Version from git (${GIT_VERSION}) doesn't match PROJECT_VERSION (${PROJECT_VERSION})")
+endif()
+if (PACKAGE_XML_VERSION AND NOT PACKAGE_XML_VERSION MATCHES ${PROJECT_VERSION})
+    message(WARNING "Version from package.xml (${PACKAGE_XML_VERSION}) doesn't match PROJECT_VERSION (${PROJECT_VERSION})")
+endif()
+
+message(STATUS "PROJECT_VERSION: " ${PROJECT_VERSION})
+message(STATUS "PACKAGE_VERSION: " ${PACKAGE_VERSION})
+
+
+version_split(${PROJECT_VERSION} PACKAGE_VERSION_MAJOR PACKAGE_VERSION_MINOR PACKAGE_VERSION_PATCH extra)
+#message(STATUS "PACKAGE_VERSION_MAJOR: " ${PACKAGE_VERSION_MAJOR})
+#message(STATUS "PACKAGE_VERSION_MINOR: " ${PACKAGE_VERSION_MINOR})
+#message(STATUS "PACKAGE_VERSION_PATCH: " ${PACKAGE_VERSION_PATCH})
+
+# generate an integer version number: major * 10000 + minor * 100 + patch
+math(EXPR PROJECT_VERSION_INT "${PACKAGE_VERSION_MAJOR} * 10000 + ${PACKAGE_VERSION_MINOR} * 100 + ${PACKAGE_VERSION_PATCH}")
+
+# make PROJECT_VERSION available as define in the project source
+#add_definitions(-DPROJECT_VERSION="${PROJECT_VERSION}")
+#add_definitions(-DPROJECT_VERSION_INT=${PROJECT_VERSION_INT})
+#add_definitions(-DPACKAGE_VERSION="${PACKAGE_VERSION}")
+#add_definitions(-DPACKAGE_VERSION_MAJOR=${PACKAGE_VERSION_MAJOR})
+#add_definitions(-DPACKAGE_VERSION_MINOR=${PACKAGE_VERSION_MINOR})
+#add_definitions(-DPACKAGE_VERSION_PATCH=${PACKAGE_VERSION_PATCH})
+
+# set ABI version to major.minor, which will be used for the SOVERSION
+set(abiversion "${PACKAGE_VERSION_MAJOR}.${PACKAGE_VERSION_MINOR}")
+
+# generate a version.h file in the binary output dir, don't forget to install it...
+string(TOUPPER "${PROJECT_NAME}" PROJECT_NAME_UPPER)
+
+# These files provide compile-time and runtime version information about your project.
+# To offer the version info to the users of your library, you need to
+# adapt the following lines in your respective CMakeLists.txt:
+#   add_library(<yourlibraryname> SHARED <your code files> ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}/project_version.cc)
+#   install(FILES ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}/project_version.h COMPONENT dev DESTINATION include/<your-include-dir>)
+# To use it within your library or tests you need to add the include directory:
+# > target_include_directories(yourtarget PUBLIC ${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME})
+configure_file(${CMAKE_CURRENT_LIST_DIR}/project_version.h.in  ${PROJECT_NAME}/project_version.h @ONLY)
+configure_file(${CMAKE_CURRENT_LIST_DIR}/project_version.cc.in ${PROJECT_NAME}/project_version.cc @ONLY)

cmake/project_version.h.in

@@ -0,0 +1,34 @@
+#ifndef @PROJECT_NAME_UPPER@_VERSION_H_
+#define @PROJECT_NAME_UPPER@_VERSION_H_
+
+/// project version as major.minor.patch string
+#define @PROJECT_NAME_UPPER@_VERSION "@PROJECT_VERSION@"
+/// project version as integer: major * 10000 + minor * 100 + patch
+#define @PROJECT_NAME_UPPER@_VERSION_INT @PROJECT_VERSION_INT@
+#define @PROJECT_NAME_UPPER@_VERSION_MAJOR @PACKAGE_VERSION_MAJOR@
+#define @PROJECT_NAME_UPPER@_VERSION_MINOR @PACKAGE_VERSION_MINOR@
+#define @PROJECT_NAME_UPPER@_VERSION_PATCH @PACKAGE_VERSION_PATCH@
+/// package version as string, possibly with git commit: v1.2.3+4+g56789abc
+#define @PROJECT_NAME_UPPER@_PACKAGE_VERSION "@PACKAGE_VERSION@"
+
+///runtime versions, where the above values are linked into a lib and therefore reflect the version
+///of the library itself (not the version of the header at compile time of the user code)
+const char* @PROJECT_NAME@_runtime_project_version();
+const char* @PROJECT_NAME@_runtime_package_version();
+int @PROJECT_NAME@_runtime_version_int();
+int @PROJECT_NAME@_runtime_version_major();
+int @PROJECT_NAME@_runtime_version_minor();
+int @PROJECT_NAME@_runtime_version_patch();
+
+///Check consistency of runtime vs compile-time version number. I.e. the header used
+///for compilation was from the same version as the linked library.
+inline bool @PROJECT_NAME@_check_version_consistency(bool major_minor_only)
+{
+  return @PROJECT_NAME@_runtime_version_major() == @PROJECT_NAME_UPPER@_VERSION_MAJOR &&
+         @PROJECT_NAME@_runtime_version_minor() == @PROJECT_NAME_UPPER@_VERSION_MINOR &&
+         (major_minor_only ||
+          @PROJECT_NAME@_runtime_version_patch() == @PROJECT_NAME_UPPER@_VERSION_PATCH);
+}
+
+
+#endif

cmk.sh

@@ -6,6 +6,7 @@ COMPILERTHREADS=0
 TEXTCLIENT=0
 RECEIVER=0
 GUI=0
+DEBUG=0
 
 
 CLEAN=0
@@ -24,6 +25,7 @@ Usage: $0 [-c] [-b] [-h] [-d <HDF5 directory>] [-j]
  -r: Build/Rebuilds only receiver
  -g: Build/Rebuilds only gui
  -j: Number of threads to compile through
+ -e: Debug mode
  
 For only make:
 ./cmk.sh
@@ -53,7 +55,7 @@ For rebuilding only certain sections
  
  " ; exit 1; }
 
-while getopts ":bchd:j:trg" opt ; do
+while getopts ":bchd:j:trge" opt ; do
 	case $opt in
 	b) 
 		echo "Building of CMake files Required"
@@ -90,7 +92,11 @@ while getopts ":bchd:j:trg" opt ; do
 		echo "Compiling Options: GUI" 
 		GUI=1
 		REBUILD=1
-		;;      
+		;;  
+	e)
+		echo "Compiling Options: Debug" 
+		DEBUG=1
+		;;    
     \?)
      	echo "Invalid option: -$OPTARG" 
 		usage
@@ -110,20 +116,21 @@ done
 
 
 if [ $TEXTCLIENT -eq 0 ] && [ $RECEIVER -eq 0 ]  && [ $GUI -eq 0 ]; then
-       CMAKE_POST+=" -DUSE_TEXTCLIENT=ON -DUSE_RECEIVER=ON -DUSE_GUI=ON "
+#       CMAKE_POST+=" -DSLS_USE_TEXTCLIENT=ON -DSLS_USE_RECEIVER=ON -DSLS_USE_GUI=ON "
+		CMAKE_POST+=" -DSLS_USE_TEXTCLIENT=ON -DSLS_USE_RECEIVER=ON  "
        echo "Compile Option: TextClient, Receiver and GUI"
 else 
        if [ $TEXTCLIENT -eq 1 ]; then
-              CMAKE_POST+=" -DUSE_TEXTCLIENT=ON "
+              CMAKE_POST+=" -DSLS_USE_TEXTCLIENT=ON "
                echo "Compile Option: TextClient"
        fi
        if [ $RECEIVER -eq 1 ]; then
-               CMAKE_POST+=" -DUSE_RECEIVER=ON "
+               CMAKE_POST+=" -DSLS_USE_RECEIVER=ON "
                echo "Compile Option: Receiver"
        fi
                                
        if [ $GUI -eq 1 ]; then
-               CMAKE_POST+=" -DUSE_GUI=ON "
+               CMAKE_POST+=" -DSLS_USE_GUI=ON "
                echo "Compile Option: GUI"
        fi
 fi
@@ -145,15 +152,20 @@ else
 	fi
 fi
 
-CMAKE_POST+=" -DCMAKE_BUILD_TYPE=Debug "
+#Debug
+if [ $DEBUG -eq 1 ]; then
+	CMAKE_POST+=" -DCMAKE_BUILD_TYPE=Debug "
+	echo "Debug Option enabled"
+fi 
+
 
 #hdf5 rebuild
 if [ $HDF5 -eq 1 ]; then
 	CMAKE_PRE+="HDF5_ROOT="$HDF5DIR
-	CMAKE_POST+=" -DUSE_HDF5=ON "
+	CMAKE_POST+=" -DSLS_USE_HDF5=ON "
 #normal mode rebuild
 else
-	CMAKE_POST+=" -DUSE_HDF5=OFF "
+	CMAKE_POST+=" -DSLS_USE_HDF5=OFF "
 fi
 
 

commitVersions.sh

@@ -1,15 +0,0 @@
-sh updateSvnVersion.sh
-
-cd slsDetectorGui
-git commit -a -m "updating versions"
-git push origin developer:developer
-
-cd ../slsDetectorSoftware
-git commit -a -m "updating versions"
-git push origin developer:developer
-
-cd ../slsReceiverSoftware
-git commit -a -m "updating versions"
-git push origin developer:developer
-
-cd ..

conda-recepie/build.sh

@@ -0,0 +1,15 @@
+mkdir build
+mkdir install
+cd build
+cmake .. \
+      -DCMAKE_PREFIX_PATH=$CONDA_PREFIX \
+      -DCMAKE_INSTALL_PREFIX=install \
+      -DSLS_USE_TEXTCLIENT=ON \
+      -DSLS_USE_RECEIVER=ON \
+      -DSLS_USE_GUI=OFF \
+      -DCMAKE_BUILD_TYPE=Release \
+      -DSLS_USE_HDF5=OFF\
+     
+
+cmake --build . -- -j10
+cmake --build . --target install

conda-recepie/copy_gui.sh

@@ -0,0 +1,15 @@
+
+mkdir $PREFIX/lib
+mkdir $PREFIX/bin
+mkdir $PREFIX/include
+
+#No libs for gui?
+
+#Binaries
+cp build/bin/gui_client $PREFIX/bin/.
+cp build/bin/slsDetectorGui $PREFIX/bin/.
+
+
+#Which headers do we need for development??
+
+# cp include/some_lib.h $PREFIX/include/.

conda-recepie/copy_lib.sh

@@ -0,0 +1,22 @@
+
+mkdir $PREFIX/lib
+mkdir $PREFIX/bin
+mkdir $PREFIX/include
+mkdir $PREFIX/include/slsDetectorPackage
+
+#Shared and static libraries
+cp build/bin/libSlsDetector.so $PREFIX/lib/.
+cp build/bin/libSlsReceiver.so $PREFIX/lib/.
+cp build/bin/libSlsSupport.so $PREFIX/lib/.
+
+#Binaries
+cp build/bin/sls_detector_acquire $PREFIX/bin/.
+cp build/bin/sls_detector_get $PREFIX/bin/.
+cp build/bin/sls_detector_put $PREFIX/bin/.
+cp build/bin/sls_detector_help $PREFIX/bin/.
+cp build/bin/slsReceiver $PREFIX/bin/.
+cp build/bin/slsMultiReceiver $PREFIX/bin/.
+
+#Which headers do we need for development??
+cp build/install/include/* $PREFIX/include/slsDetectorPackage/
+# cp include/some_lib.h $PREFIX/include/.

conda-recepie/meta.yaml

@@ -0,0 +1,98 @@
+
+package:
+  name: sls_detector_software
+  version: "refactor"
+
+source:
+  - path: ..
+
+build:
+  number: 0
+  rpaths:
+    - lib/
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{compiler('cxx')}}
+    - cmake
+    - qwt 6.*
+    - qt=4.8.7=7
+    - zeromq=4.2.5=hfc679d8_5
+    - pyzmq
+    - xorg-libx11
+    - xorg-libice
+    - xorg-libxext
+    - xorg-libsm
+    - xorg-libxau
+    - xorg-libxrender
+    - xorg-libxfixes
+    - {{ cdt('mesa-libgl-devel') }}      # [linux]
+    - {{ cdt('mesa-libegl-devel') }}     # [linux]
+    - {{ cdt('mesa-dri-drivers') }}      # [linux]
+    - {{ cdt('libselinux') }}      # [linux]
+    - {{ cdt('libxdamage') }}            # [linux]
+    - {{ cdt('libxxf86vm') }}            # [linux]
+
+  host:
+    - libstdcxx-ng
+    - libgcc-ng
+    - libpng >=1.6.32,<1.6.35
+    - xorg-libx11
+    - xorg-libice
+    - xorg-libxext
+    - xorg-libsm
+    - xorg-libxau
+    - xorg-libxrender
+    - xorg-libxfixes
+
+  run:
+    - libstdcxx-ng
+    - libgcc-ng 
+
+outputs:
+  - name: sls_detector_lib
+    version: "refactor"
+    script: copy_lib.sh
+    requirements:
+      build:
+        - {{ compiler('c') }}
+        - {{compiler('cxx')}}
+
+  # - name: sls_detector
+  #   version: "refactor"
+  #   script: copy_lib.sh
+    # requirements:
+    #   build:
+    #     - {{ compiler('c') }}
+    #     - {{compiler('cxx')}}
+
+  # - name: sls_detector_gui
+  #   version: "refactor"
+  #   script: copy_gui.sh
+  #   requirements:
+  #     build:
+  #     - {{ compiler('c') }}
+  #     - {{compiler('cxx')}}
+  #     - cmake
+  #     - qwt 6.*
+  #     - qt=4.8.7=7
+  #     - zeromq=4.2.5=hfc679d8_5
+  #     - pyzmq
+  #     - xorg-libx11
+  #     - xorg-libice
+  #     - xorg-libxext
+  #     - xorg-libsm
+  #     - xorg-libxau
+  #     - xorg-libxrender
+  #     - xorg-libxfixes
+  #     - {{ cdt('mesa-libgl-devel') }}      # [linux]
+  #     - {{ cdt('mesa-libegl-devel') }}     # [linux]
+  #     - {{ cdt('mesa-dri-drivers') }}      # [linux]
+  #     - {{ cdt('libselinux') }}      # [linux]
+  #     - {{ cdt('libxdamage') }}            # [linux]
+  #     - {{ cdt('libxxf86vm') }}            # [linux]
+  #     run:
+  #       - sls_detector_lib=refactor
+  #       - qwt 6.*
+  #       - qt=4.8.7=7

examples/gotthard_two.config

@@ -0,0 +1,57 @@
+detsizechan 2560 1
+
+hostname bchip074+bchip075+
+
+
+0:extsig:0 trigger_in_rising_edge
+0:rx_tcpport 1954
+0:rx_udpport 50001
+0:vhighvoltage 0
+
+1:extsig:0 trigger_in_rising_edge
+1:rx_tcpport 1955
+1:rx_udpport 50002
+1:vhighvoltage 0
+
+##############################################################################
+#########
+######### Uncomment this part to use the gotthard25umZmq process
+#########
+##############################################################################
+
+# #replace my_receiver_hostname with the hostname of IP of the machine where the receiver runs
+#0:rx_zmqip my_receiver_hostname 
+#0:rx_zmqport 30003
+# #replace my_client_hostname with the hostname of IP of the machine where the client/GUI or softIOC runs
+#0:zmqip my_client_hostname 
+#0:zmqport  40003
+
+# #replace my_receiver_hostname with the hostname of IP of the machine where the receiver runs
+#1:rx_zmqip my_receiver_hostname 
+#1:rx_zmqport 30004
+# #replace my_client_hostname with the hostname of IP of the machine where the client/GUI or softIOC runs
+#1:zmqip  my_client_hostname 
+#1:zmqport  40004
+
+##############################################################################
+#########
+######### until here
+#########
+##############################################################################
+
+
+r_readfreq 1
+rx_datastream 1
+
+#replace my_receiver_hostname with the hostname of 1Gb IP of the machine where the receiver runs
+rx_hostname my_receiver_hostname
+rx_datastream 1
+outdir /tmp/
+
+
+settings veryhighgain
+exptime 0.000005
+period 0.0001
+
+vhighvoltage 90
+

examples/howto_gotthard_twomodules.txt

@@ -0,0 +1,13 @@
+Turn on the two receivers:
+slsReceiver -t1954 &
+slsReceiver -t1955 &
+
+Switch on the photon conversion on the receiver machine (replace my_receiver_hostname):
+gotthard25umZmq my_receiver_hostname 30003 my_receiver_hostname 40003 &
+
+Run the configuration file:
+sls_detector_put config bchip2modules.config 
+
+
+Start your measurements using the command line, the slsDetectorGui or the EPICS driver
+

examples/moench01_T1_lab.config

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+patword 018a 0008599f0008503a
+patword 018b 0008599f0008503a
+patword 018c 0008599f0008503a
+patword 018d 0008599f0008503a
+patioctrl 8f0effff6dbffdbf
+patclkctrl 0000000000000000
+patlimits 0000 018c
+patloop0 013a 016b
+patnloop0 199
+patloop1 0400 0400
+patnloop1 0
+patloop2 0400 0400
+patnloop2 0
+patwait0 00aa
+patwaittime0 40000
+patwait1 0400
+patwaittime1 0
+patwait2 0400
+patwaittime2 0
+
+
+####mcp2011
+#0:rx_udpip 10.1.1.102
+#0:detectorip 10.1.1.19
+#0:rx_udpport 32410
+####gui listening to 
+#zmqip 129.129.202.131
+#zmqport 30001
+####data streaming out of
+#rx_zmqip 10.1.2.103
+#rx_zmqport 30003
+#0:rx_hostname mpc2011
+
+####mx-test-1
+0:rx_udpip 10.1.1.100
+0:detectorip 10.1.1.19
+0:rx_udpport 32410
+####gui listening to (on receiver pc)
+zmqip 129.129.202.92
+zmqport 30001
+####data streaming out of
+rx_zmqip 10.1.1.100
+rx_zmqport 30003
+0:rx_hostname pcmoench01
+
+
+
+
+
+
+
+
+
+
+
+#turn on datastream from commandline
+rx_datastream 1
+
+r_readfreq 1
+
+#0:configuremac -1
+rx_datastream 1
+
+r_readfreq 1
+
+
+dac:6 800
+dac:0 1300
+dac:4 1428
+dac:1 1000
+dac:7 900
+dac:3 680
+dac:2 1400
+dac:5 1200
+adcinvert 4a342593
+samples 5000
+adcphase 90
+adcpipeline 15
+adcreg 14 40
+powerchip 1
+vhighvoltage 90
+period 0.005
+
+
+
+
+
+
+frames 100
+period 0.1
+outdir /scratch/
+enablefwrite 0
+
+
+

integrationTests/CMakeLists.txt

@@ -0,0 +1,39 @@
+MESSAGE( STATUS "CMAKE_CURRENT_SOURCE_DIR: " ${CMAKE_CURRENT_SOURCE_DIR} )
+MESSAGE( STATUS "PROJECT_SOURCE_DIR: " ${PROJECT_SOURCE_DIR} )
+
+
+
+include_directories(
+    ${PROJECT_SOURCE_DIR}/catch
+)
+
+if(SLS_USE_TESTS)
+    set(TEST_SOURCES
+        src/test-slsDetector.cpp
+        src/test.cpp
+    )
+    add_executable(detector_test ${TEST_SOURCES})
+    
+    target_link_libraries(detector_test 
+        slsDetectorShared
+        slsSupportLib
+        pthread
+        rt
+    )  
+    set_target_properties(detector_test PROPERTIES
+            RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
+    )
+    add_executable(a src/a.cpp)
+
+    target_link_libraries(a 
+        slsDetectorShared
+        slsSupportLib
+        pthread
+        rt
+    )  
+    set_target_properties(a PROPERTIES
+        RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
+    )
+
+endif()
+

integrationTests/src/a.cpp

@@ -0,0 +1,94 @@
+
+#include "catch.hpp"
+
+#include "ClientSocket.h"
+#include "Timer.h"
+#include "logger.h"
+#include "slsDetector.h"
+#include "sls_detector_defs.h"
+#include "sls_detector_exceptions.h"
+#include "sls_detector_funcs.h"
+#include <iostream>
+#include <vector>
+
+#define VERBOSE
+
+using sls::RuntimeError;
+using sls::SharedMemoryError;
+using sls::SocketError;
+using sls::DetectorError;
+
+int main() {
+
+
+    const std::string hostname = "beb083";
+    auto type = slsDetector::getTypeFromDetector(hostname);
+    slsDetector d(type);
+    d.setHostname(hostname);
+    d.setOnline(true);
+    std::cout << "hostname: " << d.getHostname() << '\n';
+    d.setThresholdTemperature(50);
+    // try{
+    //     d.setThresholdTemperature(50);
+    // }catch(const DetectorError &e){
+    //     std::cout << "Caught: " << e.what() << '\n';
+    // }
+    // std::cout << "hostname: " << d.getHostname() << '\n';
+    // std::cout << "exptime: " << d.setDAC(-1, slsDetectorDefs::E_Vrf, 0) << '\n';
+
+
+
+
+    // slsDetector d2(type);
+    // std::cout << "Online: " << d2.getOnlineFlag() << '\n';
+    // d2.setHostname("beb55555");
+    // d2.setOnline(true);
+    // std::cout << "Online: " << d2.getOnlineFlag() << '\n';
+    // std::cout << "hostname: " << d2.getHostname() << '\n';
+
+    // std::cout << "port: " << d.getControlPort() << '\n';
+    // d.setOnline(true);
+    // d.setReceiverOnline(true);
+    // std::cout << "reciver version: " << std::hex << d.getReceiverVersion() << '\n';
+    // // std::cout << "version: " << d.getId(slsDetectorDefs::CLIENT_RECEIVER_API_VERSION) << '\n';
+    // d.freeSharedMemory();
+    // //Catch exception
+    // try {
+    //     throw RuntimeError("something went wrong");
+    // } catch (RuntimeError &e) {
+    //     std::cout << "Caught RuntimeError with message : " << e.what() << '\n';
+    // }
+
+    // //Catch base class
+    // try {
+    //     throw SharedMemoryError("Could not create shared memory");
+    // } catch (RuntimeError &e) {
+    //     std::cout << "Caught: " << e.what() << '\n';
+    // }
+
+    // //Catch base class after looking for something else
+    // try {
+    //     throw SharedMemoryError("Could not create shared memory");
+    // } catch (SocketError &e) {
+
+    //     std::cout << "Caught Socket error: " << e.what() << '\n';
+
+    // } catch (RuntimeError &e) {
+    //     std::cout << "Caught base class: " << e.what() << '\n';
+    // }
+
+    // //Catch any after looking for something else
+    // try {
+    //     throw SharedMemoryError("Could not create shared memory");
+    // } catch (SocketError &e) {
+
+    //     std::cout << "Caught Socket error: " << e.what() << '\n';
+
+    // } catch (...) {
+    //     std::cout << "Caught Something else probably should have let me crash\n";
+    // }
+
+
+    // throw RuntimeError("This one we missed");
+    return 0;
+}

integrationTests/src/test-multiDetector.cpp

@@ -0,0 +1,11 @@
+// #include "catch.hpp"
+// #include "multiSlsDetector.h"
+
+// #include <iostream>
+// TEST_CASE("Initialize a detector") {
+// multiSlsDetector det(0, true, true);
+//   std::cout << "Size: " << det.getNumberOfDetectors() << std::endl;
+//   std::cout << "Hostname: " << det.getHostname() << std::endl;
+//   REQUIRE(false);
+  
+// }

integrationTests/src/test-slsDetector.cpp

@@ -0,0 +1,199 @@
+
+#include "catch.hpp"
+
+#include "ClientSocket.h"
+#include "logger.h"
+#include "slsDetector.h"
+#include "sls_detector_defs.h"
+
+#include "Timer.h"
+#include "sls_detector_funcs.h"
+#include <iostream>
+#include <vector>
+#define VERBOSE
+
+auto type_enum = slsDetectorDefs::detectorType::EIGER;
+const std::string hostname = "beb083";
+const std::string type_string = "Eiger";
+const std::string my_ip = "129.129.205.242";
+
+TEST_CASE("single EIGER detector no receiver basic set and get") {
+    //TODO! this test should take command line arguments for config
+
+    //Read type by connecting to the detector
+    auto type = slsDetector::getTypeFromDetector(hostname);
+    CHECK(type == type_enum);
+
+    //Create slsDetector of said type and set hostname and detector online
+    slsDetector d(type);
+    CHECK(d.getDetectorTypeAsEnum() == type);
+    CHECK(d.getDetectorTypeAsString() == type_string);
+
+    d.setHostname(hostname);
+    CHECK(d.getHostname() == hostname);
+
+    d.setOnline(true);
+    CHECK(d.getOnlineFlag() == true);
+
+    CHECK(d.getReceiverOnline() == false);
+    CHECK(d.checkDetectorVersionCompatibility() == slsDetectorDefs::OK);
+
+    //Setting and reading exposure time
+    auto t = 1000000000;
+    d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME, t);
+    CHECK(d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME) == t);
+
+    //size of an eiger half module with and without gap pixels
+    CHECK(d.getTotalNumberOfChannels() == 256 * 256 * 4);
+    CHECK(d.getTotalNumberOfChannels(slsDetectorDefs::dimension::X) == 1024);
+    CHECK(d.getTotalNumberOfChannels(slsDetectorDefs::dimension::Y) == 256);
+    // CHECK(d.getTotalNumberOfChannels(slsDetectorDefs::dimension::Z) == 1);
+    CHECK(d.getTotalNumberOfChannelsInclGapPixels(slsDetectorDefs::dimension::X) == 1024);
+    CHECK(d.getTotalNumberOfChannelsInclGapPixels(slsDetectorDefs::dimension::Y) == 256);
+    // CHECK(d.getTotalNumberOfChannelsInclGapPixels(slsDetectorDefs::dimension::Z) == 1);
+
+    CHECK(d.getNChans() == 256 * 256);
+    CHECK(d.getNChans(slsDetectorDefs::dimension::X) == 256);
+    CHECK(d.getNChans(slsDetectorDefs::dimension::Y) == 256);
+    // CHECK(d.getNChans(slsDetectorDefs::dimension::Z) == 1);
+
+    CHECK(d.getNChips() == 4);
+    CHECK(d.getNChips(slsDetectorDefs::dimension::X) == 4);
+    CHECK(d.getNChips(slsDetectorDefs::dimension::Y) == 1);
+    // CHECK(d.getNChips(slsDetectorDefs::dimension::Z) == 1);
+
+    d.freeSharedMemory();
+}
+
+TEST_CASE("Set control port then create a new object with this control port") {
+    /*
+    TODO!
+    Standard port but should not be hardcoded 
+    Is this the best way to initialize the detectors
+    Using braces to make the object go out of scope
+    */
+    int old_cport = DEFAULT_PORTNO;
+    int old_sport = DEFAULT_PORTNO + 1;
+    int new_cport = 1993;
+    int new_sport = 2000;
+
+    {
+        auto type = slsDetector::getTypeFromDetector(hostname);
+        CHECK(type == type_enum);
+        slsDetector d(type);
+        d.setHostname(hostname);
+        d.setOnline(true);
+        CHECK(d.getControlPort() == old_cport);
+        d.setControlPort(new_cport);
+        CHECK(d.getStopPort() == old_sport);
+        d.setStopPort(new_sport);
+        d.freeSharedMemory();
+    }
+    {
+        auto type = slsDetector::getTypeFromDetector(hostname, new_cport);
+        CHECK(type == type_enum);
+        slsDetector d(type);
+        d.setHostname(hostname);
+        d.setControlPort(new_cport);
+        d.setStopPort(new_sport);
+        CHECK(d.getControlPort() == new_cport);
+        CHECK(d.getStopPort() == new_sport);
+
+        d.setOnline(true);
+
+        //Reset standard ports
+        d.setControlPort(old_cport);
+        d.setStopPort(old_sport);
+        d.freeSharedMemory();
+    }
+
+    auto type = slsDetector::getTypeFromDetector(hostname);
+    CHECK(type == type_enum);
+    slsDetector d(type);
+    d.setHostname(hostname);
+    d.setOnline(true);
+    CHECK(d.getStopPort() == DEFAULT_PORTNO + 1);
+}
+
+TEST_CASE("Locking mechanism and last ip") {
+    auto type = slsDetector::getTypeFromDetector(hostname);
+    slsDetector d(type);
+    d.setHostname(hostname);
+    d.setOnline(true);
+
+    //Check that detector server is unlocked then lock
+    CHECK(d.lockServer() == 0);
+    d.lockServer(1);
+    CHECK(d.lockServer() == 1);
+
+    //Can we do things while it is locked
+    auto t = 1300000000;
+    d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME, t);
+    CHECK(d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME) == t);
+
+    //unlock again
+    d.lockServer(0);
+    CHECK(d.lockServer() == 0);
+
+    CHECK(d.getLastClientIP() == my_ip);
+}
+
+TEST_CASE("Excersise all possible set timer functions") {
+    // FRAME_NUMBER, /**< number of real time frames: total number of acquisitions is number or frames*number of cycles */
+    // ACQUISITION_TIME, /**< exposure time */
+    // FRAME_PERIOD, /**< period between exposures */
+    // DELAY_AFTER_TRIGGER, /**< delay between trigger and start of exposure or readout (in triggered mode) */
+    // GATES_NUMBER, /**< number of gates per frame (in gated mode) */
+    // CYCLES_NUMBER, /**< number of cycles: total number of acquisitions is number or frames*number of cycles */
+    // ACTUAL_TIME, /**< Actual time of the detector's internal timer */
+    // MEASUREMENT_TIME,  /**< Time of the measurement from the detector (fifo) */
+
+    // PROGRESS, /**< fraction of measurement elapsed - only get! */
+    // MEASUREMENTS_NUMBER,
+    // FRAMES_FROM_START,
+    // FRAMES_FROM_START_PG,
+    // SAMPLES,
+    // SUBFRAME_ACQUISITION_TIME, /**< subframe exposure time */
+    // STORAGE_CELL_NUMBER, /**<number of storage cells */
+    // SUBFRAME_DEADTIME, /**< subframe deadtime */
+    // MEASURED_PERIOD,	/**< measured period */
+    // MEASURED_SUBPERIOD,	/**< measured subperiod */
+    // MAX_TIMERS
+
+    auto type = slsDetector::getTypeFromDetector(hostname);
+    slsDetector d(type);
+    d.setHostname(hostname);
+    d.setOnline(true);
+
+    //Number of frames
+    auto frames = 10;
+    d.setTimer(slsDetectorDefs::timerIndex::FRAME_NUMBER, frames);
+    CHECK(d.setTimer(slsDetectorDefs::timerIndex::FRAME_NUMBER) == frames);
+
+    auto t = 10000000;
+    d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME, t);
+    CHECK(d.setTimer(slsDetectorDefs::timerIndex::ACQUISITION_TIME) == t);
+
+    auto period = 1000000000;
+    d.setTimer(slsDetectorDefs::timerIndex::FRAME_PERIOD, period);
+    CHECK(d.setTimer(slsDetectorDefs::timerIndex::FRAME_PERIOD) == period);
+
+    // not implemented for EIGER
+    // auto delay = 10000;
+    // d.setTimer(slsDetectorDefs::timerIndex::DELAY_AFTER_TRIGGER, delay);
+    // CHECK(d.setTimer(slsDetectorDefs::timerIndex::DELAY_AFTER_TRIGGER) == delay);
+
+    // auto gates = 1;
+    // d.setTimer(slsDetectorDefs::timerIndex::GATES_NUMBER, gates);
+    // CHECK(d.setTimer(slsDetectorDefs::timerIndex::GATES_NUMBER) == gates);
+
+    auto cycles = 2;
+    d.setTimer(slsDetectorDefs::timerIndex::CYCLES_NUMBER, cycles);
+    CHECK(d.setTimer(slsDetectorDefs::timerIndex::CYCLES_NUMBER) == cycles);
+
+    auto subtime = 200;
+    d.setTimer(slsDetectorDefs::timerIndex::SUBFRAME_ACQUISITION_TIME, subtime);
+    CHECK(d.setTimer(slsDetectorDefs::timerIndex::SUBFRAME_ACQUISITION_TIME) == subtime);
+}
+
+// TEST_CASE()

integrationTests/src/test.cpp

@@ -0,0 +1,3 @@
+// tests-main.cpp
+#define CATCH_CONFIG_MAIN
+#include "catch.hpp"

manual/manual-api/CMakeLists.txt

@@ -1,17 +1,32 @@
-
-add_executable(slsMultiReceiver
+set(SOURCES
     mainReceiver.cpp
 )
-set_target_properties(slsMultiReceiver PROPERTIES
-    RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
+
+include_directories(
+    ../../slsSupportLib/include
+    ../../slsReceiverSoftware/include
+    ../../build/bin 
+    ../../slsdetectorSoftware/slsDetector 
 )
+
+add_executable(slsMultiReceiver
+    ${SOURCES}
+)
+
 target_link_libraries(slsMultiReceiver
     slsReceiverShared
     pthread
-    zmq
+    ${ZeroMQ_LIBRARIES}
     rt
 )
 
-install(TARGETS slsMultiReceiver  
-        RUNTIME DESTINATION bin)
-        
+if (HDF5_FOUND)
+    target_link_libraries(slsMultiReceiver ${HDF5_LIBRARIES})
+endif ()
+
+
+set_target_properties(slsMultiReceiver PROPERTIES
+    RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
+)
+
+install(TARGETS slsMultiReceiver DESTINATION bin)

manual/manual-api/Makefile

@@ -1,18 +1,26 @@
-INCLUDES	=   -I . 
+PKGDIR		=	../..
+LIBDIR		=   $(PKGDIR)/bin
+INCLUDES	=   -I . -I$(PKGDIR)/slsSupportLib/include -I$(LIBDIR) -I$(PKGDIR)/slsDetectorSoftware/slsDetector  -I$(PKGDIR)/slsReceiversoftware/include
 SRC_DET		= 	mainClient.cpp 	
 SRC_REC		=   mainReceiver.cpp
-LIBDIR		=   .
-LDFLAG_DET 	=	-I. -L$(LIBDIR) -lSlsDetector -L/usr/lib64/ -pthread -lrt -L. -lzmq
-LDFLAG_REC 	=	-I. -L$(LIBDIR) -lSlsReceiver -L/usr/lib64/ -pthread -lrt -L. -lzmq
+ZMQLIBDIR	= 	$(PKGDIR)/slsSupportLib/include
+LDFLAG_DET 	=	-I. -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsDetector -L/usr/lib64/ -pthread -lrt -L$(ZMQLIBDIR) -Wl,-rpath=$(ZMQLIBDIR) -lzmq
+LDFLAG_REC 	=	-I. -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L/usr/lib64/ -pthread -lrt -L$(ZMQLIBDIR) -Wl,-rpath=$(ZMQLIBDIR) -lzmq
 DESTDIR		?=	../docs
 
+HDF5 		?=	no
+HDF5_DIR 	?=	/opt/hdf5v1.10.0
 
-all: docs detUser detReceiver 
+ifeq ($(HDF5),yes)
+	LDFLAG_REC += -L$(HDF5_DIR)/lib  -Wl,-rpath=$(HDF5_DIR)/lib -lhdf5 -lhdf5_cpp -lsz -lz -DHDF5C 
+endif
+
+all: docs detUser slsMultiReceiver 
 #all: docs
 
 docs: createdocs docspdf docshtml removedocs
 
-createdocs: slsDetectorUsers.doxy slsDetectorUsers.h detectorData.h slsReceiverUsers.h mainClient.cpp mainReceiver.cpp
+createdocs: slsDetectorUsers.doxy mainClient.cpp mainReceiver.cpp
 	doxygen slsDetectorUsers.doxy	
 
 docspdf: 
@@ -35,18 +43,20 @@ detUser:$(SRC_DET)
 	mkdir -p bin
 	g++ -o bin/detUser $(SRC_DET) $(INCLUDES) $(LDFLAG_DET) -lm -lstdc++
 
-detReceiver:$(SRC_REC)
+slsMultiReceiver:$(SRC_REC)
 	echo "creating receiver"
+	echo $LDFLAG_REC
 	mkdir -p bin
-	g++ -o bin/detReceiver $(SRC_REC) $(INCLUDES) $(LDFLAG_REC) -lm -lstdc++
-	
+	g++ -o bin/slsMultiReceiver $(SRC_REC) $(INCLUDES) $(LDFLAG_REC) -lm -lstdc++
+	cp bin/slsMultiReceiver $(LIBDIR)
 	
 clean:
 	echo "cleaning for manual-api"
-	rm -rf bin/detUser bin/detReceiver slsDetectorUsersDocs
+	rm -rf bin/detUser bin/slsMultiReceiver bin/detReceiver slsDetectorUsersDocs
 	rm -rf slsDetectorUsersDocs
 	rm -rf $(DESTDIR)/html/slsDetectorUsersDocs
 	rm -rf $(DESTDIR)/pdf/slsDetectorUsersDocs.pdf
+	rm -rf $(LIBDIR)/slsMultiReceiver
 	
 
 

manual/manual-api/ansi.h

@@ -1 +0,0 @@
-../../slsReceiverSoftware/include/ansi.h

manual/manual-api/detectorData.h

@@ -1 +0,0 @@
-../../slsDetectorSoftware/slsDetectorAnalysis/detectorData.h

manual/manual-api/libSlsDetector.so

@@ -1 +0,0 @@
-../../build/bin/libSlsDetector.so

manual/manual-api/libSlsReceiver.so

@@ -1 +0,0 @@
-../../build/bin/libSlsReceiver.so

manual/manual-api/libzmq.a

@@ -1 +0,0 @@
-../../slsReceiverSoftware/include/libzmq.a

manual/manual-api/mainClient.cpp

@@ -54,7 +54,12 @@ int main(int argc,  char **argv) {
 
 
 	/** - slsDetectorUsers Object is instantiated with appropriate ID */
-	slsDetectorUsers *pDetector = new  slsDetectorUsers (id);
+	int ret = 1;
+	slsDetectorUsers *pDetector = new slsDetectorUsers (ret, id);
+	if (ret == 1) {
+		std::cout << "Error: Could not instantiate slsDetectorUsers" << std::endl;
+		return EXIT_FAILURE;
+	}
 
 
 	/** - if specified, load configuration file (necessary at least the first time it is called to properly configure advanced settings in the shared memory) */
@@ -71,10 +76,6 @@ int main(int argc,  char **argv) {
 
 	/** - registering data callback */
 	pDetector->registerDataCallback(&dataCallback, NULL);
-	/** - if receiver exists, enable data streaming from receiver to get the data */
-	pDetector->enableDataStreamingFromReceiver(1);
-	/** - create zmq sockets in client to enable data streaming in of data from receiver/different process */
-	pDetector->enableDataStreamingToClient(1);
 
 
 	/** - ensuring detector status is idle before starting acquisition. exiting if not idle */
@@ -93,7 +94,7 @@ int main(int argc,  char **argv) {
 
 	/** - start measurement */
 	pDetector->startMeasurement();
-	std::cout << "measurement finished" << std::endl;	usleep(1*1000*1000);
+	std::cout << "measurement finished" << std::endl;
 
 	/** - returning when acquisition is finished or data are avilable */
 

manual/manual-api/mainReceiver.cpp

@@ -16,7 +16,7 @@ It is linked in manual/manual-api from slsReceiverSoftware/include ]
 
  */
 
-#include "sls_receiver_defs.h"
+#include "sls_detector_defs.h"
 #include "slsReceiverUsers.h"
 
 #include <iostream>
@@ -71,7 +71,7 @@ void printHelp() {
  */
 int StartAcq(char* filepath, char* filename, uint64_t fileindex, uint32_t datasize, void*p){
 	cprintf(BLUE, "#### StartAcq:  filepath:%s  filename:%s fileindex:%llu  datasize:%u ####\n",
-			filepath, filename, fileindex, datasize);
+			filepath, filename, (long long unsigned int)fileindex, datasize);
 
 	cprintf(BLUE, "--StartAcq: returning 0\n");
 	return 0;
@@ -83,7 +83,7 @@ int StartAcq(char* filepath, char* filename, uint64_t fileindex, uint32_t datasi
  * @param p pointer to object
  */
 void AcquisitionFinished(uint64_t frames, void*p){
-	cprintf(BLUE, "#### AcquisitionFinished: frames:%llu ####\n",frames);
+	cprintf(BLUE, "#### AcquisitionFinished: frames:%llu ####\n",(long long unsigned int)frames);
 }
 
 
@@ -96,21 +96,21 @@ void AcquisitionFinished(uint64_t frames, void*p){
  * @param p pointer to object
  */
 void GetData(char* metadata, char* datapointer, uint32_t datasize, void* p){
-	slsReceiverDefs::sls_receiver_header* header = (slsReceiverDefs::sls_receiver_header*)metadata;
-	slsReceiverDefs::sls_detector_header detectorHeader = header->detHeader;
+	slsDetectorDefs::sls_receiver_header* header = (slsDetectorDefs::sls_receiver_header*)metadata;
+	slsDetectorDefs::sls_detector_header detectorHeader = header->detHeader;
 
-	PRINT_IN_COLOR (detectorHeader.modId?detectorHeader.modId:detectorHeader.xCoord,
+	PRINT_IN_COLOR (detectorHeader.modId?detectorHeader.modId:detectorHeader.row,
 			"#### %d GetData: ####\n"
-			"frameNumber: %llu\t\texpLength: %u\t\tpacketNumber: %u\t\tbunchId: %llu"
-			"\t\ttimestamp: %llu\t\tmodId: %u\t\t"
-			"xCoord: %u\t\tyCoord: %u\t\tzCoord: %u\t\tdebug: %u"
+			"frameNumber: %lu\t\texpLength: %u\t\tpacketNumber: %u\t\tbunchId: %lu"
+			"\t\ttimestamp: %lu\t\tmodId: %u\t\t"
+			"row: %u\t\tcolumn: %u\t\treserved: %u\t\tdebug: %u"
 			"\t\troundRNumber: %u\t\tdetType: %u\t\tversion: %u"
 			//"\t\tpacketsMask:%s"
 			"\t\tfirstbytedata: 0x%x\t\tdatsize: %u\n\n",
-			detectorHeader.xCoord, detectorHeader.frameNumber,
-			detectorHeader.expLength, detectorHeader.packetNumber, detectorHeader.bunchId,
-			detectorHeader.timestamp, detectorHeader.modId,
-			detectorHeader.xCoord, detectorHeader.yCoord, detectorHeader.zCoord,
+			detectorHeader.row, (long unsigned int)detectorHeader.frameNumber,
+			detectorHeader.expLength, detectorHeader.packetNumber, (long unsigned int)detectorHeader.bunchId,
+			(long unsigned int)detectorHeader.timestamp, detectorHeader.modId,
+			detectorHeader.row, detectorHeader.column, detectorHeader.reserved,
 			detectorHeader.debug, detectorHeader.roundRNumber,
 			detectorHeader.detType, detectorHeader.version,
 			//header->packetsMask.to_string().c_str(),
@@ -130,21 +130,21 @@ void GetData(char* metadata, char* datapointer, uint32_t datasize, void* p){
  * @param p pointer to object
  */
 void GetData(char* metadata, char* datapointer, uint32_t &revDatasize, void* p){
-	slsReceiverDefs::sls_receiver_header* header = (slsReceiverDefs::sls_receiver_header*)metadata;
-	slsReceiverDefs::sls_detector_header detectorHeader = header->detHeader;
+	slsDetectorDefs::sls_receiver_header* header = (slsDetectorDefs::sls_receiver_header*)metadata;
+	slsDetectorDefs::sls_detector_header detectorHeader = header->detHeader;
 
-	PRINT_IN_COLOR (detectorHeader.modId?detectorHeader.modId:detectorHeader.xCoord,
+	PRINT_IN_COLOR (detectorHeader.modId?detectorHeader.modId:detectorHeader.row,
 			"#### %d GetData: ####\n"
 			"frameNumber: %llu\t\texpLength: %u\t\tpacketNumber: %u\t\tbunchId: %llu"
 			"\t\ttimestamp: %llu\t\tmodId: %u\t\t"
-			"xCoord: %u\t\tyCoord: %u\t\tzCoord: %u\t\tdebug: %u"
+			"row: %u\t\tcolumn: %u\t\treserved: %u\t\tdebug: %u"
 			"\t\troundRNumber: %u\t\tdetType: %u\t\tversion: %u"
 			//"\t\tpacketsMask:%s"
 			"\t\tfirstbytedata: 0x%x\t\tdatsize: %u\n\n",
-			detectorHeader.xCoord, detectorHeader.frameNumber,
-			detectorHeader.expLength, detectorHeader.packetNumber, detectorHeader.bunchId,
-			detectorHeader.timestamp, detectorHeader.modId,
-			detectorHeader.xCoord, detectorHeader.yCoord, detectorHeader.zCoord,
+			detectorHeader.row, (long long unsigned int)detectorHeader.frameNumber,
+			detectorHeader.expLength, detectorHeader.packetNumber, (long long unsigned int)detectorHeader.bunchId,
+			(long long unsigned int)detectorHeader.timestamp, detectorHeader.modId,
+			detectorHeader.row, detectorHeader.column, detectorHeader.reserved,
 			detectorHeader.debug, detectorHeader.roundRNumber,
 			detectorHeader.detType, detectorHeader.version,
 			//header->packetsMask.to_string().c_str(),
@@ -187,7 +187,7 @@ int main(int argc, char *argv[]) {
 	sa.sa_flags=0;							// no flags
 	sa.sa_handler=sigInterruptHandler;		// handler function
 	sigemptyset(&sa.sa_mask);				// dont block additional signals during invocation of handler
-	if (sigaction(SIGINT, &sa, NULL) == -1) {
+	if (sigaction(SIGINT, &sa, nullptr) == -1) {
 		cprintf(RED, "Could not set handler function for SIGINT\n");
 	}
 
@@ -197,7 +197,7 @@ int main(int argc, char *argv[]) {
 	asa.sa_flags=0;							// no flags
 	asa.sa_handler=SIG_IGN;					// handler function
 	sigemptyset(&asa.sa_mask);				// dont block additional signals during invocation of handler
-	if (sigaction(SIGPIPE, &asa, NULL) == -1) {
+	if (sigaction(SIGPIPE, &asa, nullptr) == -1) {
 		cprintf(RED, "Could not set handler function for SIGPIPE\n");
 	}
 
@@ -221,10 +221,10 @@ int main(int argc, char *argv[]) {
 			char temp[10];
 			sprintf(temp,"%d",startTCPPort + i);
 			char* args[] = {(char*)"ignored", (char*)"--rx_tcpport", temp};
-			int ret = slsReceiverDefs::OK;
+			int ret = slsDetectorDefs::OK;
 			/**	-  create slsReceiverUsers object with appropriate arguments */
 			slsReceiverUsers *receiver = new slsReceiverUsers(3, args, ret);
-			if(ret==slsReceiverDefs::FAIL){
+			if(ret==slsDetectorDefs::FAIL){
 				delete receiver;
 				exit(EXIT_FAILURE);
 			}
@@ -236,22 +236,22 @@ int main(int argc, char *argv[]) {
 
 				/** - Call back for start acquisition */
 				cprintf(BLUE, "Registering 	StartAcq()\n");
-				receiver->registerCallBackStartAcquisition(StartAcq, NULL);
+				receiver->registerCallBackStartAcquisition(StartAcq, nullptr);
 
 				/** - Call back for acquisition finished */
 				cprintf(BLUE, "Registering 	AcquisitionFinished()\n");
-				receiver->registerCallBackAcquisitionFinished(AcquisitionFinished, NULL);
+				receiver->registerCallBackAcquisitionFinished(AcquisitionFinished, nullptr);
 
 				/* 	- Call back for raw data */
 				cprintf(BLUE, "Registering     GetData() \n");
-				if (withCallback == 1) receiver->registerCallBackRawDataReady(GetData,NULL);
-				else if (withCallback == 2) receiver->registerCallBackRawDataModifyReady(GetData,NULL);
+				if (withCallback == 1) receiver->registerCallBackRawDataReady(GetData,nullptr);
+				else if (withCallback == 2) receiver->registerCallBackRawDataModifyReady(GetData,nullptr);
 			}
 
 
 
 			/**	- start tcp server thread */
-			if (receiver->start() == slsReceiverDefs::FAIL){
+			if (receiver->start() == slsDetectorDefs::FAIL){
 				delete receiver;
 				cprintf(BLUE,"Exiting Child Process [ Tid: %ld ]\n", (long)syscall(SYS_gettid));
 				exit(EXIT_FAILURE);
@@ -272,7 +272,7 @@ int main(int argc, char *argv[]) {
 	sa.sa_flags=0;							// no flags
 	sa.sa_handler=SIG_IGN;					// handler function
 	sigemptyset(&sa.sa_mask);				// dont block additional signals during invocation of handler
-	if (sigaction(SIGINT, &sa, NULL) == -1) {
+	if (sigaction(SIGINT, &sa, nullptr) == -1) {
 		cprintf(RED, "Could not set handler function for SIGINT\n");
 	}
 
@@ -283,7 +283,7 @@ int main(int argc, char *argv[]) {
 
 	/** - Parent process waits for all child processes to exit */
 	for(;;) {
-		pid_t childPid = waitpid (-1, NULL, 0);
+		pid_t childPid = waitpid (-1, nullptr, 0);
 
 		// no child closed
 		if (childPid == -1) {

manual/manual-api/slsDetectorUsers.doxy

@@ -81,7 +81,11 @@ LATEX_HIDE_INDICES = YES
 SOURCE_BROWSER	= YES
 
 PREDEFINED           = __cplusplus
-
-INPUT            = slsDetectorUsers.h detectorData.h slsReceiverUsers.h mainClient.cpp mainReceiver.cpp
+ 
+INPUT            = 		../../slsDetectorSoftware/slsDetector/slsDetectorUsers.h		\
+					 	../../slDetectorSoftware/slsDetectorAnalysis/detectorData.h 	\
+					 	../../slsReceiverSoftware/include/slsReceiverUsers.h 			\
+					 	mainClient.cpp 													\
+					 	mainReceiver.cpp
 
 OUTPUT_DIRECTORY = slsDetectorUsersDocs

manual/manual-api/slsDetectorUsers.h

@@ -1 +0,0 @@
-../../slsDetectorSoftware/slsDetector/slsDetectorUsers.h

manual/manual-api/slsReceiverUsers.h

@@ -1 +0,0 @@
-../../slsReceiverSoftware/include/slsReceiverUsers.h

manual/manual-api/sls_receiver_defs.h

@@ -1 +0,0 @@
-../../slsReceiverSoftware/include/sls_receiver_defs.h

manual/manual-api/sls_receiver_funcs.h

@@ -1 +0,0 @@
-../../slsReceiverSoftware/include/sls_receiver_funcs.h

manual/manual-api/zmq.h

@@ -1 +0,0 @@
-../../slsReceiverSoftware/include/zmq.h

manual/manual-client/Eiger_short.tex

@@ -24,12 +24,10 @@ Figure ~\ref{boards} show the readout board basic components on an Eiger half mo
 \begin{center}
 \includegraphics[width=1\textwidth]{Boards}
 \end{center}
-\caption{Picture with most relevant components of the EIGER readout system. The readout system starts with the Front End Boards (FEB) which performs data descrambling (also converts the packets from 12 $\to$ 16 bits) and rate correction. The BackEndBoard (BEB) has 2x2GB DDR2 memories and can perform data buffering (storing images on board) and data summation (16 bit $\to$ 32 bits). The controls to the detector are passed through the 1Gb, while in most installations, the data are sent out through the 10GB ethernet connection.} 
+\caption{Picture with most relevant components of the EIGER readout system. The readout system starts with the Front End Boards (FEB) which performs data descrambling (also converts the packets from 12 $\to$ 16 bits) and rate correction. The BackEndBoard (BEB) has 2x2GB DDR2 memories and can perform data buffering (storing images on board) and data summation (16 bit $\to$ 32 bits). The controls to the detector are passed through the 1Gb, while in most installations, the data are sent out through the 10~GB ethernet connection.} 
 \label{boards}
 \end{figure}
 
-
-
 \subsection{Mandatory setup - Hardware}
 An EIGER single module (500~kpixels) needs:
 \begin{itemize}
@@ -66,7 +64,8 @@ The directory contains some executables that are needed to make your detector to
  \begin{verbatim}
 ./on #to switch modules on
 ./off #to switch modules off
-./hvget #gets the current HV value
+./state #tells you if is ON or OFF
+cat /var/log/pcu.log #displays the log if there are problem
 ./waterflow #returns the current waterflow returned by the flowmeter
 ./temp #returns the water temperature returned by the flowmeter
  \end{verbatim}
@@ -93,10 +92,14 @@ The receiver is a process run on a PC closely connected to the detector. Open on
 where xxxx, yyyy are the tcp port numbers. Use 1955 and 1956 for example. The receiver for the bottom is open without arguments but still in the configuration file one needs to write {\tt{n:flippeddatax 1}}, where {\tt{2n+1}} indicated the half module number, 1 if it is a module.
 \\ Open as many receiver as half module boards. A single module has two half module boards.
 
-From the software version 3.0.1, one can decide weather start a zmq callback from the receiver to the client (for example to visualize data in the slsDetectorGui or another gui). If the zmq steam is not required (cased of the command line for example, one can switch off the streaming with {\tt{./sls\_detector\_put rx\_datastream 0}}, enable it with {\tt{./sls\_detector\_put rx\_datastream 1}}. In the case of inizialising the stream to use the slsDetectorGui, nothing needs to be taken care of by the user. If instead you want to stream the streaming on different channels, the zmq port of the client can be set stealing from the slsDetectorGui stream having {\tt{./sls\_detector\_put zmqport 300y}}. Note that if this is done globally (not for every half module n independently, then the client automatically takes into account that for every half module, there are 2 zmq stream. The receiver stream {\tt{./sls\_detector\_put rx\_zmqport 300y}} has to match such that the GUI can work. 
+From the software version 3.0.1, one can decide weather start a zmq callback from the receiver to the client (for example to visualize data in the slsDetectorGui or another gui). If the zmq steam is not required (cased of the command line for example, one can switch off the streaming with {\tt{./sls\_detector\_put rx\_datastream 0}}, enable it with {\tt{./sls\_detector\_put rx\_datastream 1}}. In the case of initializing the stream to use the slsDetectorGui, nothing needs to be taken care of by the user. If instead you want to stream the streaming on different channels, the zmq port of the client can be set stealing from the slsDetectorGui stream having {\tt{./sls\_detector\_put zmqport 300y}}. Note that if this is done globally (not for every half module n independently, then the client automatically takes into account that for every half module, there are 2 zmq stream. The receiver stream {\tt{./sls\_detector\_put rx\_zmqport 300y}} has to match such that the GUI can work. 
 If one desires to set the zmqport manually, he offset has to be taken into account: {\tt{./sls\_detector\_put 0:rx\_zmqport 300y}}, {\tt{./sls\_detector\_put 1:rx\_zmqport 300y+2}} and so on..
 
-There is an example code that can be compiled in {\tt{manual/manual-api/mainReceiver.cpp}} and gives the executable {\tt{./detReceiver}}, use it with two or more receivers to open all receivers in one single terminal: {\tt{./detReceiver startTCPPort numReceivers withCallback}}, where startTCPPort assumes the other ports are consecutively increased.
+
+{\tt{slsMultiReceiver}} uses two or more receivers in one single terminal: {\tt{./slsMultiReceiver startTCPPort numReceivers withCallback}}, where startTCPPort assumes the other ports are consecutively increased.
+
+The command {\tt{r\_framesperfile}} sets the number of frames written in the same file. By default now it is 10000. It can be changes. It needs to be lowered particularly if one wants to parallelize the following conversion of the files. 
+
 
 \subsection{Mandatory setup - Client}
 
@@ -153,6 +156,14 @@ outdir /sls/X12SA/data/x12saop/Data10/Eiger0.5M
 threaded 1
 \end{verbatim}
 
+The geometry on af an EIGER module, showing the quadrants corresponding to the udp ports and the 2 receivers is shown in figure~\ref{fig:eigerports}.
+\begin{figure}[t]
+\begin{center}
+\includegraphics[width=0.9\textwidth]{Eiger-Chips}
+\end{center}
+\caption{Geometry of UDP ports and receivers in a singel module.}
+\label{fig:eigerports}
+\end{figure}
 
 In the case you are developing your own receiver, then you need to remove the 1Gb receiver hostname {\tt{rx\_hostname}} and substitute it with the mac address of the device:
 \begin{verbatim}
@@ -160,7 +171,6 @@ configuremac 0
 rx_udpmac xx:xx:...
 \end{verbatim}
 
-
 One can configure all the detector settings in a parameter file {\tt{setup.det}}, which is loaded by doing:
 \begin{verbatim}
 sls_detector_put 0-parameters setup.det
@@ -216,6 +226,7 @@ We have added a special command, {\tt{thresholdnotb}}, which allows to scan the
 \begin{verbatim}
 sls_detector_put 0-thresholdnotb energy_in_eV
 \end{verbatim}
+See section~\ref{sec:fastthresholdscan}.
 
 \section{Standard acquisition}
 
@@ -282,6 +293,39 @@ The detector will not accept other commands while acquiring. If an acquisition w
 \end{itemize}
 this same command can be used after a non proper abortion of the acquisition to reset to normal status the detector.
 
+\section{Gap pixels inside a module}
+A module is composed of 2$\times$4 chips. Each chip is of dimension 256$\times$256 pixels. There is no dead area in a module, as a single sensor covers the 8 chips. The physical pixels at the border of the chips in the sensor are double in size, to allow not to loose photons in the gaps between the chip alignment. They count double what the other normal pixels would count. In the corner between chips, the pixels are 4-times the normal size. See figure~\ref{fgappix} to check the geometry.
+
+\begin{figure}[t]
+\begin{center}
+\includegraphics[width=0.9\textwidth]{GapPixels}
+\end{center}
+\caption{Geometry of gap pixels between a module.}
+\label{fgappix}
+\end{figure}
+
+It is possible to interpolated the value on the larger pixels by splitting the events (or properly interpolating) introducing a virtual pixel for every double pixel, or 3 virtual pixels for every corner. In this way the counts of a single large pixel can be shared among the correct amount of pixels of the normal dimension.     
+
+The gap pixels can be added for the slsDetectorGui, from the datacall back or stealing the zmq port from the GUI (see later). The detector size can be added in the configuration file as first thing. 
+
+Putting the long side of the module first always as a convection for the code, WITHOUT GAP PIXELS an EIGER module is:
+\begin{verbatim}
+detsizechan 1024 512 
+\end{verbatim}
+and the client needs to be set {\tt{sls\_detector\_put  gappixels 0}}, which is the default behavior.\\
+If you want to have GAP PIXELS included: 
+\begin{verbatim}
+detsizechan 1030 514 
+\end{verbatim}
+and the client needs to be set {\tt{sls\_detector\_put  gappixels 1}}.
+
+The size of the gap pixels between modules to insert is 
+\begin{verbatim}
+   GapPixelsBetweenModules_x = 8
+   GapPixelsBetweenModules_y = 36
+\end{verbatim}
+where the {\tt{GapPixelsBetweenModules\_x}} are the one on the short side of the module, while {\tt{GapPixelsBetweenModules\_y}} are the ones on the long side of the module (where the wirebonds take physical space).
+  
 \section{Readout timing- maximum frame rate}\label{timing}
 IMPORTANT: to have faster readout and smaller dead time, one can configure {\tt{clkdivider}}, i.e. the speed at which the data are read, i.e. 200/100/50~MHz for {\tt{clkdivider 0/1/2}} and the dead time between frames through {\tt{flags parallel}}, i.e. acquire and read at the same time or acquire and then read out.
 The configuration of this timing variables allows to achieve different frame rates. NOTE THAT IN EIGER, WHATEVER YOU DO, THE FRAME RATE LIMITATIONS COME FROM THE NETWORK BOTTLENECK AS THE HARDWARE GOES FASTER THAN THE DATA OUT.
@@ -369,48 +413,50 @@ where the 'minimum time between frames' and the minimum period will be discussed
 \begin{tiny}
 \begin{table}
 \begin{flushleft}
-\begin{tabular}{|c|c|c|c|c|c|c|}
+\begin{tabular}{|c|c|c|c|c|c|c|c|}
 \hline
-\tiny{dr} & \tiny{clkdivider} & \tiny{flags} & \tiny{t between frames($\mu$s) } &  \tiny{max frame rate (kHz)} & \tiny{min period ($\mu$s)} & \tiny{max imgs (nominal/our network)}\\
+\tiny{dr} & \tiny{clkdivider} & \tiny{flags} & \tiny{$\Delta$t frames($\mu$s) } &  \tiny{max FR (kHz)} & \tiny{min period ($\mu$s)} & \tiny{meas. period ($\mu$s)} & \tiny{max imgs (nominal/our network)}\\
 \hline
-4 & 0 & parallel & 3.4 & 22  & 44 & 30k/50k\\
+4 & 0 & \tiny {parallel} & 3.4 & 22  & 44 & 44.01 & 30k/50k\\
 \hline
-4 & 1 & parallel & 6 & 10.5 & 92 & 30k/100k\\
+4 & 1 & \tiny {parallel} & 6 & 10.5 & 92 & 92.02 & 30k/100k\\
 \hline
-4 & 2 & parallel & 11.2 & 5.4 & 197 & infinite\\
+4 & 2 & \tiny {parallel} & 11.2 & 5.4 & 197& 197.01 & infinite\\
 \hline
 \hline
-8 & 0 & parallel & 3.4 & 11.1 & 89 & 15k/24k\\
+8 & 0 & \tiny {parallel} & 3.4 & 11.1 & 89 & 89.01 & 15k/24k\\
 \hline
-8 & 1 & parallel & 6.1 & 5.7 & 181 & 15k/52k\\
+8 & 1 & \tiny {parallel} & 6.1 & 5.7 & 181 & 181.01 & 15k/52k\\
 \hline
-8 & 2 & parallel & 11.2 &  2.9 &  342 & infinite\\
+8 & 2 & \tiny {parallel} & 11.2 &  2.9 &  342 & 342.01 & infinite\\
 \hline
 \hline
-16 & 0 & parallel & 3.4 & 6.1 & (126+38)* =164 & 8k/12k\\
+16 & 0 & \tiny {parallel} & 3.4 & 6.1 & (126+38)* =164 & 164.02 & 8k/12k\\
 \hline
-16 & 0 & nonparallel &  126 & 5.6 & (126+52)*= 179 & 8k/23k\\
+16 & 0 & \tiny {nonparallel} &  127 & 5.6 & (126+52)*= 179 & 179.01& 8k/23k\\
 \hline
-16 & 1 & parallel &  6.1 & 3.9 &  257 & 8k/28k\\
+16 & 1 & \tiny {parallel} &  6.1 & 3.9 &  257 & 257.01 & 8k/28k\\
 \hline
-16 & 1 & nonparallel & 255 & 3.3 &  303 & infinite\\
+16 & 1 & \tiny {nonparallel} & 255 & 3.3 &  303 & 303.01 & infinite\\
 \hline
-16 & 2 & parallel &  11 & 1.9 & 526 & infinite \\
+16 & 2 & \tiny {parallel} &  11.2 & 1.9 & 526 & 526.2 & infinite \\
 \hline
-16 & 2 & nonparallel & 504 & 1.8  & 555 & infinite\\
+16 & 2 & \tiny {nonparallel} & 505 & 1.8  & 555 & 555.01& infinite\\
 \hline
 %32 & 2 & parallel &  11 & 2&  & &\\
 %\hline
 %32 & 2 & nonparallel & 504 & $<2$&  & &\\
 %\hline
 \end{tabular}
-\caption{Readout settings. The {\tiny{min exptime}} possible is 5$-$10~$\mu$s. This is due to the time to pass the pixel enable signal in the whole chip. The time between frames has been measured with the oscilloscope and the maximum frames rate has been tested with an external gating from a pulse generator at known frequence. The minimum period is obtained as 1/$\textrm{max frame rate}$.}
+\caption{Readout settings. The {\tiny{min exptime}} possible is 5$-$10~$\mu$s. This is due to the time to pass the pixel enable signal in the whole chip. The time between frames ($\Delta$t) has been measured with the oscilloscope and the maximum frames rate (max FR) has been tested with an external gating from a pulse generator at known frequency. The minimum period is obtained as 1/$\textrm{max frame rate}$.}
 \label{tframes}
 \end{flushleft}
 \end{table}
 \end{tiny}
 
-\textbf{As if you run too fast, the detector could become noisier, it is important to match the detector settings to your frame rate. This can be done having more parameters files and load the one suitable with your experiment.} We experienced that with low energy settings could not reach 6~kHz and no noise.
+\textbf{From software version 4.0.0, there is a very useful function {\tt{sls\_detector\_get measuredperiod}} which return the measured period AFTER the acquisition. This is important to check that the settings to obtain the targeted frame rate was correct.} 
+
+\textbf{If you run too fast, the detector could become noisier (see problem shooting), it is important to match the detector settings to your frame rate. This can be done having more parameters files and load the one suitable with your experiment.} We experienced that with low energy settings could not reach 6~kHz and no noise.
 
 In 16 bit mode, it could make sense, in case of noise and low threshold to either reduce the frame rate:
 \begin{equation} 
@@ -482,6 +528,12 @@ The number of subframes composing a single 32bit acquisition can be calculated a
 \end{equation}
 This also means that {\tt{exptime}}$<${\tt{subexptime}} will be rounded to{\tt{subexptime}}. If you want shorter acquisitions, either reduce the {\tt{subexptime}} or switch two 16-bit mode (you can always sum offline if needed).   
 
+From release 4.0.0, an extra {\tt{flag overflow/nooverflow}} is added, with {\tt{nooverflow}} default:
+\begin{itemize}
+\item {\tt{nooverflow}}: the internal 12-bit result is summed, even if there was saturation of the 12-bit counter (4095) in any of the subframes. Note that if there is saturation for every subframe, you might get as a result a value of the counter equal to (4095$\times$~number~of~subframes), which you need to correctly identify. On the other hand if the saturation occurred only one time, you will get something "close'' to the real number.
+\item {\tt{overflow}}: In this case, even if a pixel saturate only 1 time in a subframe, you will be returned as a value of the counter for that pixel: $2^{32}-1$, i.e. 4294967295.  
+\end{itemize}
+
 The UDP header will contain, after you receive the data, the effective number of subframe per image (see section~\ref{UDP}) as  "SubFrame Num or Exp Time", i.e. the number of subframes recorded  (32 bit eiger).
 The effective time the detector has recorded data can be computed as:
 \begin{equation}
@@ -489,7 +541,9 @@ The effective time the detector has recorded data can be computed as:
 %\label{esubframes}
 \end{equation}
 
-In the future release, a configurable extra time difference between subframes will be introduced for the parallel mode, so that some noise appearing in detectors at low threshold can be removed. This will enlarge the time difference between frames form the default 12~$\mu$s to something configurable, expected to be 15-40~$\mu$s (for the 9M it is currently 200~$\mu$s due to a noisier module).
+ From release 4.0.0, a configurable extra time difference between subframes can be introduced for the parallel mode, so that some noise appearing in detectors at low threshold can be removed. This is obtained through the {\tt{subdeadtime}}. You need to add values specific for your detector (ask the detector group). Typically, values between 15-40~$\mu$s should be used (for the 9M it is currently 200~$\mu$s due to a noisier module).
+
+
 
 \section{External triggering options}\label{triggering}
 The detector can be setup such to receive external triggers. Connect a LEMO signal to the TRIGGER IN connector in the Power Distribution Board (see Fig.). The logic 0 for the board is passed by low level 0$-$0.7~V, the logic 1 is passed to the board with a signal between 1.2$-$5~V. Eiger is 50~$\Omega$ terminated. By default the positive polarity is used (negative should not be passed to the board).
@@ -515,12 +569,23 @@ Here are the implemented options so far:
 \item {\tt{auto}} is the software controlled acquisition (does not use triggers), where {\tt{exptime}} and {\tt{period}} have to be set. Set number of cycles (i.e. triggers) to 1 using {\tt{cycles}}. Set number of frames using {\tt{frames}}.
 \item {\tt{trigger}} 1 frame taken for 1 trigger. Your {\tt{frames}} needs to be  1 always, {\tt{cycles}} can be changed and defines how many triggers are considered.  {\tt{exptime}} needs to be set. In the GUI this is called trigger exposure series.  
 \item {\tt{burst\_trigger}} gets only 1 trigger, but allows to take many frames. With {\tt{frames}} one can change the number of frames. {\tt{cycles}} needs to be 1.  {\tt{exptime}} and {\tt{period}} have to be set. In the gui it is called trigger readout.
-\item{\tt{gating}} allows to get a frame only when the trigger pulse is gating. Note that in this case the exp time and period only depend on the gating signal. {\tt{cycles}} allows to select how many gates to consider.  Set number of frames to 1 using {\tt{frames}}.
+\item{\tt{gating}} allows to get a frame only when the trigger pulse is gating. Note that in this case the exp time and period only depend on the gating signal. {\tt{cycles}} allows to select how many gates to consider.  Set number of frames to 1 using {\tt{frames}}. ATTENTION: if you are in 16 bit mode and you are applying online rate corrections, as now the exptime is generated by the trigger, you might not have correct rate corrections. If you know what the exposure time is in the gating signal, then you can set the {\tt{exptime}} once and the rate corrections will be correct. If the exposure time is unknow, it is recommended that you switch off the rate corrections. In 32 bit mode, it does not matter as the rate corrections depends on the {\tt{subexptime}} which is software set independently from the gate exptime.
+
 \end{itemize}
 
 Hardware-wise, the ENABLE OUT signal outputs when the chips are really acquiring. This means that the single subframes will be output in 32 bit mode. The TRIGGER OUT outputs the sum-up-signal at the moment (which is useless). This will be changed in the future to output the envelop of the enable signal. 
 
-We are planning to change some functionality, i.e. unify the {\tt{trigger}} and {\tt{burst}} trigger modes and make both {\tt{frames}} and {\tt{cycles}} configurable at the same time.
+We are planning to change some functionality, i.e. unify the {\tt{trigger}} and {\tt{burst\_trigger}} trigger modes and make both {\tt{frames}} and {\tt{cycles}} configurable at the same time.
+
+There is the possibility to use {\tt{timing trigger/burst\_trigger}} and send software single commands to fake the trigger. This is done with:
+\begin{verbatim}
+sls_detector_put 0-timing [trigger/burst_trigger]
+sls_detector_put 0-frames x
+sls_detector_put 0-cycles y
+sls_detector_status trigger
+\end{verbatim}
+ Note that this functionality is very (!) useful if you need to do something between and acquisition and the next. This can be used to do a fast threshold scan for example. See section~\ref{sec:fastthresholdscan}.
+
 
 \section{Autosumming and rate corrections} \label{advanced}
 
@@ -654,7 +719,7 @@ To activate back a module, do:
 \end{verbatim}
 
 \end{itemize}
-\subsection{Setting up 10Gb correctly: experience so far}\label{10g}
+\section{Setting up the PC settings for 10Gb}\label{10g}
 
 For configuring well the 10Gb card not to loose packets, 
 \begin{itemize}
@@ -676,13 +741,54 @@ Very important is to activate the flow control in 10Gb (in 1Gb it is on by defau
 \begin{verbatim}
 ./sls_detector_put flowcontrol_10g 1
 \end{verbatim}
-Set the transmission delays as explained in the manual.
+You ned to check that flow control is setup on the reeceiving interfaces. Check with:
+\begin{verbatim}
+ethtool -a eth1
+\end{verbatim}
+.RX should be ON. Set the transmission delays as explained in the manual if necessary. These transmission delays should help matching teh writing speed performance of your disk. You can check how fast you are writing using the {\tt{dstat}} command.  
+
+Now setup the computer server propery:
+Check the size of: 
+\begin{verbatim}
+sysctl -a | grep backlog
+sysctl -a | grep rmem
+\end{verbatim}
+Set it correctly with: 
+\begin{verbatim}
+sysctl net.core.netdev_max_backlog=250000
+sysctl net.core.rmem_default=$((100*1024*1024))
+\end{verbatim}
+
+Last, you can disable power saving in teh CPU frequency:
+\begin{verbatim}
+cpupower frequency-info
+cpupower frequency-set -g performance 
+\end{verbatim}
 
 It can help to increase the fifo size of the receiver to {\tt{rx\_fifodepth}} to 1000 images
 \begin{verbatim}
 ./sls_detector_put rx_fifodepth 1000
 \end{verbatim}
-One needs to keep into account that in 16 bit mode for 1 image we expect each slsReceiver  to allocate 0.5MB. So for 1000 images, we expect  500MB memory for each receiver. This can be monitored in Linux with "top" or "free -m".
+One needs to keep into account that in 16 bit mode for 1 image we expect each slsReceiver  to allocate 0.5MB. So for 1000 images, we expect  500MB memory for each receiver. This can be monitored in Linux with "top" or "free -m". To receive the max number of images possible on the detector, a minimum of 8~GB of memories are required.
+
+Last, it is very important that not too many files are created. There is high possibility to loose packets in the time to close and open files for the writer. IN 3.1.x, the default number of images written per file, in Eiger is 2000. This is defined by the line:
+\begin{verbatim}
+#define EIGER_MAX_FRAMES_PER_FILE	2000
+\end{verbatim}
+in {\tt{slsDetectorsPackage/slsReceiverSoftware/include/sls\_receiver\_defs.h}}. In 4.0.x, this is interactively defined using the command: {\tt{r\_framesperfile}}. By default it is 10000.  
+
+If you do not have a large disk, you can write to memory if your pc is not fast enough:
+\begin{verbatim}
+mount -t tmpfs none /ramdisk_folder
+\end{verbatim}
+or 
+\begin{verbatim}
+mount -t tmpfs none /mnt/ramdisk -o size=10G
+\end{verbatim}
+check how many GB memory you can allocate, to avoid swapping otherwise
+
+
+
 
 \section{Offline processing and monitoring}
 
@@ -718,44 +824,58 @@ white the option {\tt{n:flippeddatax 1}}, which flips in vertical the content of
 \subsection{``raw'' files}
 If you use the option of writing raw files, you will have a raw file for each UDP port (meaning most likely 2 chips), 4 files per module. In addition to the raw files, you will get also a ``master'' file, containing in ascii some detector general parameters and the explanation of how to interpret the data from the raw files.
    
-The master file is named: {\tt{filename\_master\_0.raw}} and for version ``3.0'' of the slsDetectorSoftware looks like:
+The master file is named: {\tt{filename\_master\_0.raw}} and for version ``4.0.0'' of the slsDetectorSoftware looks like:
  
 \begin{verbatim}
-Version            : 1.0
-Dynamic Range      : 16
-Ten Giga           : 1
-Image Size         : 262144 bytes
-x                  : 512 pixels
-y                  : 256 pixels
-Total Frames       : 1
-Exptime (ns)       : 1000000000
-SubExptime (ns)    : 2621440
-Period (ns)        : 1000000000
-Timestamp          : Thu Aug 17 10:55:19 2017
+Version                    : 2.0
+Dynamic Range              : 32
+Ten Giga                   : 1
+Image Size                 : 524288 bytes
+x                          : 512 pixels
+y                          : 256 pixels
+Max. Frames Per File       : 10000
+Total Frames               : 1
+Exptime (ns)               : 1000000000
+SubExptime (ns)            : 2621440
+SubPeriod(ns)              : 2621440
+Period (ns)                : 1000000000
+Timestamp                  : Mon Sep  3 09:07:05 2018
 
 
 #Frame Header
-Frame Number       : 8 bytes
-SubFrame Number    : 4 bytes
-Packet Number      : 4 bytes
-Bunch ID           : 8 bytes
-Timestamp          : 8 bytes
-Module Id          : 2 bytes
-X Coordinate       : 2 bytes
-Y Coordinate       : 2 bytes
-Z Coordinate       : 2 bytes
-Debug              : 4 bytes
-Round Robin Number : 2 bytes
-Detector Type      : 1 byte
-Header Version     : 1 byte
+Frame Number               : 8 bytes
+SubFrame Number/ExpLength  : 4 bytes
+Packet Number              : 4 bytes
+Bunch ID                   : 8 bytes
+Timestamp                  : 8 bytes
+Module Id                  : 2 bytes
+X Coordinate               : 2 bytes
+Y Coordinate               : 2 bytes
+Z Coordinate               : 2 bytes
+Debug                      : 4 bytes
+Round Robin Number         : 2 bytes
+Detector Type              : 1 byte
+Header Version             : 1 byte
+Packets Caught Mask        : 64 bytes
 \end{verbatim}
 
 Note that if one wants to  reconstruct the real time the detector was acquiring in 32 bit (autosumming mode), one would have to multiply the SubExptime (ns) for the SubFrame Number. 
 
 \subsection{Offline image reconstruction}
-The offline image reconstruction{\tt{slsImageReconstruction}} is not part of the package anymore.
+The offline image reconstruction{\tt{slsImageReconstruction}} is not part of the package anymore. The code is still available doing \\
+{\tt{git clone git@git.psi.ch:sls\_detectors\_software/sls\_image\_reconstruction.git slsImageReconstruction}}.
+Checkout the {\tt{developer}} branch if in a 3.1.X release or the {\tt{v4.0.0}} branch if in 4.0.X release of the {\tt{slsDetector}} code.
 
-The detector writes 2 raw files per receiver. An offline image reconstruction executable has been written to collate the possible files together and produce cbf files. The executable uses the CBFlib-0.9.5 library (downloaded from the web as it download some architecture dependent packages at installation).\\
+Three possible conversions are possible: into \textbf{cbf}, \textbf{hdf5} and \textbf{root} format. The detector writes 4 raw files per receiver. An offline image reconstruction executable has been written to collate the possible files together and produce output files. By default an interpolation between the values of the large pixels is performed. Gap pixels between modules are also inserted.
+
+Note that the number of images per file is hardcoded and needs to match whatever you are using in {\tt{slsDetectorsPackage/slsReceiverSoftware/include/sls\_receiver\_defs.h}}:
+\begin{verbatim}
+#define EIGER_MAX_FRAMES_PER_FILE	2000
+\end{verbatim}
+The default is 2000.
+
+\subsubsection{cbf}
+The cbf executable executable uses the CBFlib-0.9.5 library (downloaded from the web as it download some architecture dependent packages at installation).Edit the Makefile to correclty point at it.\\
 \underline{At cSAXS, the CBFlib-0.9.5 has been compiled -such that the required packages are}\\\underline{ downloaded in /sls/X12SA/data/x12saop/EigerPackage/CBFlib-0.9.5.}\\ 
 
 To use it for a single module:
@@ -765,29 +885,90 @@ cbfMaker [filename with dir]
 eg.
 {\tt{cbfMaker /scratch/run\_63\_d1\_f000000000000\_3.raw}}\\
 
-To use it for a 1.5 multi modules:
-\begin{verbatim}
-cbfMaker [filename] [pixels x] [pixels y] ([singlemodulelongside_x] [start det])
-\end{verbatim}
+To use it any geometry:\\
+{\tt{cbfMaker [filename] [outdir, def=same as filename] [pixels x, def=1024] [pixels y, def=512] [singlemodulelongside\_x, def=1] [fillgaps, def=Interpolate Big Pixels] [hdf5datasetname, def="Eiger"] [start det,def=0]}}\\
 eg.
-{\tt cbfMaker /scratch/run\_63\_d0\_f000000000000\_3.raw  3072 512 1 0}.\\
-The {\tt{[singlemodulelongside\_x]}} {\tt{[option to interpolate gap pixels]}} param are optional. Defaults are ``1'', the detector long side is on the x coordinate and start to reconstruct from module 0. 
+{\tt cbfMaker /scratch/run\_63\_d0\_f000000000000\_3.raw  3072 512 1 2 ``Eiger'' 0}.\\
+
+The {\tt{[singlemodulelongside\_x]}} {\tt{[option to interpolate gap pixels]}} param are optional. Defaults are ``1'', the detector long side is on the x coordinate and to start to reconstruct from module 0.
+The interpolation scheme fro the gap pixels between chips is by default ``interpolate large big pixels'', =2;
+If you want to change interpolation scheme, use:\\
+\begin{tabular}{|c|c|}
+\hline
+interpolation scheme & argument\\
+\hline
+insert gap pixels and assign value only to the first one  & 0\\
+\hline
+equally divide the value of the counter bettern the two pixels & 1\\
+\hline
+interpolate large pixel value & 2\\
+\hline
+mask the value of the two gap pixels & 3\\
+\hline
+\end{tabular}
+\ \\
+\ \\ 
 The executables: 
 \begin{verbatim}
-bcfMaker1.5M [file_name_with_dir]
-bcfMaker9M [file_name_with_dir]
+cbfMaker1.5M [file_name_with_dir]
+cbfMakerOMNY [file_name_with_dir]
+cbfMaker9M [file_name_with_dir]
 \end{verbatim}
-contain the hardcoded geometry for the 1.5M (3 modules horizontal on the long side) and for the 9M at cSAXS: 6(short side)$\times$3 (long side) modules.\\ 
+contain the hardcoded geometry for the 1.5M (3 modules horizontal on the long side), the 1.5M OMNY geometry (3 modules next to each other on the long side) and for the 9M at cSAXS: 6(short side)$\times$3 (long side) modules.\\ 
 Missing packets in a frame and border pixels ($\times 2$ and $\times 4$ are given with value $-1$ at the present time.
 
-It is important to know, that the pixels at the edge between 2 chips count more as double size. We can virtually introduced 1 virtual pixel per double larger pixel, so to have an even number of counts everywhere. Virtual pixels (not filled ) between module gaps are also inserted.
+Make sure the following options are uncommented in the {\tt{slsImageReconstruction/src/main\_csaxs.cpp}} file. 
+\begin{verbatim}
+#define MYCBF
+##following line only if you need to process with 
+##BUBBLE (Material Science / uXAS beamlines).
+#define MSHeader 
+\end{verbatim}
+Compile it with: 
+\begin{verbatim}
+make cbfMaker; make cbfMakerOMNY;
+\end{verbatim}
 
- \begin{verbatim}
-   GapPixelsBetweenChips_x = 2;
-   GapPixelsBetweenChips_y = 2;
-   GapPixelsBetweenModules_x = 8;
-   GapPixelsBetweenModules_y = 36;
- \end{verbatim}
+\subsubsection{hdf5}
+In case of HDF5 output file, we rely on having the HDF5 1.10.1 library installed. Edit the Makefile to correclty point at it. Different compression methods are being tried so different external filters might be to be installed. This work is not finished yet.
+
+To choose HDF5, with ZLIB implementation, open {\tt{slsImageReconstruction/src/main\_csaxs.cpp}} and make sure that 
+\begin{verbatim}
+#define HDF5f
+#define ZLIB
+\end{verbatim}
+are not commented out. All other options need to be commented out. Copile the code with 
+\begin{verbatim}
+make hdf5Maker; make hdf5MakerOMNY;
+\end{verbatim}
+
+If you are at cSAXS. all images collected will be written in a single file. If you are not at CSAXS, most likely you want to have all the images written in a single raw file into an HDF5 file. The multiple HDF5 files are then linked in a master file, with many subdatasets (can be read by albula) or by a virtual file with a single dataset. If you want a master o virtual file, uncomment this option:
+\begin{verbatim}
+#define MASTERVIRTUAL
+\end{verbatim}
+and recompile.
+To use it for a single module:
+\begin{verbatim}
+hdf5Maker [filename with dir]
+\end{verbatim}
+eg.
+{\tt{hdf5Maker /scratch/run\_63\_d1\_f000000000000\_3.raw}}\\
+
+To use it any geometry:\\
+{\tt{hdf5Maker [filename] [pixels x, def=1024] [pixels y, def=512] [singlemodulelongside\_x, def=1] [fillgaps, def=Interpolate Big Pixels] [hdf5datasetname, def="Eiger"] [start det,def=0]}}\\
+eg.
+{\tt hdf5Maker /scratch/run\_63\_d0\_f000000000000\_3.raw  3072 512 1 2 ``Eiger'' 0}.\\
+
+\subsubsection{root}
+The data will be written as TH2D in root format. Edit the {\tt{Makefile}} to point to the correct ROOT library location. Compile the executable as:
+\begin{verbatim}
+make image 
+\end{verbatim}
+There is no program other executable that already keeps into account the geometry for it.
+To use it any geometry:\\
+{\tt{image [filename] [pixels x, def=1024] [pixels y, def=512] [singlemodulelongside\_x, def=1] [fillgaps, def=Interpolate Big Pixels] [hdf5datasetname, def="Eiger"] [start det,def=0]}}\\
+eg.
+{\tt image /scratch/run\_63\_d0\_f000000000000\_3.raw  3072 512 1 2 ``Eiger'' 0}.\\
 
 \subsection{Read temperatures/HV from boards}
 
@@ -851,6 +1032,16 @@ ssh root@$i sync; done
 
 \section{Loading firmware bitfiles}
 
+\textbf{As a new procedure, the first thing to do is to kill the server on the boards, copy the new one there without starting it.} Note that failure to do this step before may cause the linux on the boards to crash and not being able to ping it (this if the registers between the old and new firmware change).
+
+This is the procedure from a terminal;
+\begin{verbatim}
+for i in beb111 beb070; 
+do ssh root@$i killall eigerDetectorServer; 
+scp eigerDetectorServer root@$i:~/executables/eigerDetectorServer ; 
+ssh root@$i sync; done
+\end{verbatim}
+
 A \textbf{bcp} executable (which needs \textbf{tftp} installed on the PC, is needed. 
 \begin{enumerate}
 \item Manual way: you need to press something on the detector. To program bitfiles (firmware files), do a hard reset with a pin/thin stuff in the holes at the very back of the module. They are between the top 7 LED and the bottom 1 and opposite for the other side. Push hard till all LEDs are alternating green and red.
@@ -909,7 +1100,7 @@ for j in $(seq 0 255) ; do
 sls_detector_put pulsenmove N 0 1;
 done;
 done;
-sls_detector_p resmat 0
+sls_detector_put resmat 0
 sls_detector_acquire
 \end{verbatim}
 You read {\tt{N}} in every pixel if you are setup correctly. 
@@ -921,6 +1112,40 @@ To load the special noise file look at {\tt{settingsdir/eiger/standard/eigernois
 \begin{verbatim}
 sls_detector_put trimbits ../settingsdir/eiger/standard/eigernoise
 \end{verbatim}
+To exit from this pattern noise, just set the threshold to something known. 
+\begin{verbatim}
+\item sls_detector_put threshold 50000 standard
+\end{verbatim}
+where 5000 would be a value in eV and {/tt{standard}} is important in this case.
+
+\section{(Fast) threshold scans during beam operation}\label{sec:fastthresholdscan}
+Occasionally you might need to do threshold scans during your data taking (for example for Laue experiments or to get any spectral information). Setting the threshold in this case would be not optimal as you would change trimbits at every energy and this could give you a ``step'' behaviour. What you could do is to use the 
+\begin{verbatim}
+\item sls_detector_put thresholdnotb 50000 
+\end{verbatim}
+ which set the threshold to an energy but does not change trimbits. We suggest that before using this function you load the {\tt{threshold}} at an energy in the middle of your scan range and then change {\tt{thresholdnotb}}.
+We have also been requested if we could speed up the threshold scan. At the moment no specific function has been integrated in firmware, but one could use the software trigger option to perform what you need:
+\begin{verbatim}
+./sls_detector_put exptime 0.01
+./sls_detector_put timing trigger
+./sls_detector_put enablefwrite 0
+./sls_detector_put resetframescaught 0 
+./sls_detector_put index 0
+./sls_detector_put cycles 21
+./sls_detector_put receiver start
+./sls_detector_put status start 
+for i in $(seq 0 20); 
+ do
+   #./sls_detector_put thresholdnotb 5000 ##this is still too slow as it loads the module 
+ ./sls_detector_put 0:vrf 3199 #need to know the appropriate vrf at every energy 
+ ./sls_detector_put 1:vrf 3199 #need to know the appropriate vrf at every energy 
+ ./sls_detector_put status trigger
+    #sleep 0.005
+done
+./sls_detector_put  receiver stop
+./sls_detector_put  resetframescaught 0 
+./sls_detector_put  timing auto
+\end{verbatim} 
 
 \section{Troubleshooting}
 \subsection{Cannot successfully finish an acquisition}
@@ -1017,6 +1242,10 @@ Note that occasionally if there is a shared memory of a different size (from an
 \end{verbatim}
 This needs to be cleaned with {\tt{ipcs -m}} and then {\tt{ipcrm -M xxx}}, where xxx are the keys with nattch 0. Alternative in the main slsDetectorFolder there is a script that can be used as {\tt{sh cleansharedmemory.sh}}. Note that you need to run the script with the account of the client user, as the shared memory belongs to the client. It is good procedure to implement an automatic cleanup of the shared memory if the client user changes often.   
 
+\subsection{Client has shared memory iusses}
+The shared memory from software version 4.0.0 creates shared memory segments in /dev/shm/. You can look at them and cancel them directly. Note that this is still user dependent.
+Environment variable SLSDETNAME can be set for using 2 different detectors from the same client pc. One needs a different multi detector id if the SLSDETNAME is different for both consoles.
+
 \subsection{Measure the HV}
 For every system: 
 \begin{itemize}
@@ -1038,6 +1267,13 @@ If you see strange lines in vertical occurring at period patterns, it is a memor
 \subsection{ssh to the boards takes long}
 Depending on your network setup,  to speed up the ssh to the boards from a pc with internal dhcp server running: \textbf{iptables -t nat -A POSTROUTING -o eth1 -j MASQUERADE; echo "1" > /proc/sys/net/ipv4/ip\_forward}, where eth1 has to be the 1Gb network device on the pc
 
+\subsection{Generate keys on the boards not to have to type the password}
+\begin{verbatim}
+export AFSDIRS64=/afs/psi.ch/intranet/Controls/Software/Trolltech/SL6-x86_64
+ssh-copy-id -i /afs/psi.ch/user/t/tinti_g/.ssh/id_rsa.pub  root@beb100
+ssh-keygen
+\end{verbatim}
+
 \subsection{Check firmware version installed on BEB}
 You can either ask in the client as described in section~\ref{api}, or login to the boards directly. Follow some steps described in Section~\ref{server}. 
 \begin{verbatim}
@@ -1061,6 +1297,13 @@ Scroll up in the terminal till you find:\\
 *************** MASTER/SLAVE ***************\\
 *************** NORMAL/SPECIAL ***************\\
 
+There is also an easier way, that is that only the master module will return the real value of the HV. If you have more than 1 detector system, then you will have more than 1 physical master, as the HV needs to be applied to all the systems.
+
+\begin{verbatim}
+for i in $(seq 0 36); do sls_detector_put $i:vhighvoltage; done
+\end{verbatim}
+ Only the master will return to you a sensible number (150 normally). the others will return -999.
+
 \subsection{'Cannot connect to socket'}
 This error is typically due to the detector server not running. For why, see section~\ref{servernot}.
 
@@ -1078,15 +1321,14 @@ If you see the client returning the following error message:\\
 \end{verbatim}
 
 \subsection{There is noise running the detector in 32-bit}
-Short story (for now): You are running in {\tt{parallel}} mode, switch {\tt{flags}} to non {\tt{nonparallel}} mode.
-Long story: If you are running the detector in 32-bit (autosumming), there might be some noise, particularly at lower thereshold energies. This is due to the fact that the analog part of the chips require some latency time to settle which is larger than the redout time. At the present moment it is possible to run the detector only in {\tt{parallel}} or {\tt{nonparallel}} mode, respectively with readout times between frames of 12~$\mu$s and 504~$\mu$s. If you switch {\tt{flags}} to non {\tt{nonparallel}} mode you will giveenough time for teh signals to settle.  For future realeas we are planning to introduce some configurable delay, such that you can remain with the {\tt{parallel}} flag, but can obtain a configurable dead time between frames in the range 12$-$504~$\mu$s. 
+If you are running the detector in 32-bit (autosumming), there might be some noise, particularly at lower threshold energies. This is due to the fact that the analog part of the chips require some latency time to settle which is larger than the readout time. It is possible to run the detector only in {\tt{parallel}} or {\tt{nonparallel}} mode, respectively with readout times between frames of 12~$\mu$s and 504~$\mu$s. If you switch {\tt{flags}} to non {\tt{nonparallel}} mode you will give enough time for the signals to settle. From release 4.0.0, there is a configurable delay that can be set through the {\tt{subdeadtime}} variable, such that you can remain with the {\tt{parallel}} flag, but can obtain a configurable dead time between frames. Ask the SLS detector group for an appropriate dead time for your detector, but typically a dead time of 20-50~$\mu$s should be enough. Note that this {\tt{subdeadtime}} need to include the 12~$\mu$s minimum readout time, so it has to be larger than 12~$\mu$s to do anything.  
  
 \subsection{There is noise running the detector at high frame rate(4,8,16 bit)}
-If are running in {\tt{parallel}} mode, in particular at low thereshold energies, you might encounter some noise. The reason is that the analog part of the chips require some latency time to settle which is larger than the redout time. 
+If are running in {\tt{parallel}} mode, in particular at low threshold energies, you might encounter some noise. The reason is that the analog part of the chips require some latency time to settle which is larger than the readout time. 
 \begin{enumerate}
 \item You can lower the frame rate and relax requirements on period: 
 At low frame rate, you normally leave enough time between the end of the acquisition and the starting of the next, so you should not see this effect. In any case setting a {\tt{period}}={\tt{exptime}}+readout time from Table~\ref{tchipro} +extra 20$\mu$s cures the problem. The 20$\mu$s could also be 10~$\mu$s, they are very hardware dependent.
-\item The frame rate requirement are stingent (as for time resolved measurements): the only option here is to reduce the {\tt{exptime}} to let the extra 20~$\mu$s (or 10)~$\mu$s. The {\tt{period}} remains the same.
+\item The frame rate requirement are stringent (as for time resolved measurements): the only option here is to reduce the {\tt{exptime}} to let the extra 20~$\mu$s (or 10)~$\mu$s. The {\tt{period}} remains the same.
 \end{enumerate} 
  
 \section{Client checks - command line}
@@ -1289,7 +1531,7 @@ In table~\ref{tframescomplete} is a list of all the readout times in the differe
 \end{table}
 \end{tiny}
 
-Table~\ref{tx} shows the bandwidth of data trasnferring between the FEB and BEB and of the DDR2 memory access. the GTX lanes are only capable of 25.6~Gbit/s. This limits the 12/16 bit frame rate. The 2$\times$DDR2 memories have a bandwidth or 2$\cdot$25.6~Gb/s=51.2~Gb/s. Due to this memory access bandwidth, the 32 bit autosumming mode can only run in {\tt{clkdivider}} 2.   
+Table~\ref{tx} shows the bandwidth of data transferring between the FEB and BEB and of the DDR2 memory access. the GTX lanes are only capable of 25.6~Gbit/s. This limits the 12/16 bit frame rate. The 2$\times$DDR2 memories have a bandwidth or 2$\cdot$25.6~Gb/s=51.2~Gb/s. Due to this memory access bandwidth, the 32 bit autosumming mode can only run in {\tt{clkdivider}} 2.   
 \begin{figure}[t]
 \begin{center}
 \includegraphics[width=1.\textwidth]{TansmissionRates}

manual/manual-main/slsDetectorInstall.tex

@@ -61,6 +61,11 @@ The \textit{data receiver}, which can be run on a different machine than the
 client, receives the data from the detector and processes it. The receiver can
 be configured, controlled and monitored by the client.
 
+\item \textcolor{blue}{slsMultiReceiver}: \\
+It is the same as the \textit{slsReceiver}, but that it is a single process 
+for many multiple slsReceiver child processes. One can configure the start TCP port,
+number of slsReceiver processes and if call back should be enabled or not.
+
 \item \textcolor{blue}{slsDetectorGUI}: \\
 The \textit{graphical user interface}, which provides a user friendly way
 of operating the detectors and data receivers with online data preview.
@@ -110,13 +115,13 @@ conda config --add channels conda-forge
 conda config --add channels slsdetectorgroup
 
 #Install latest version
-conda install sls_detector_software
+conda install sls_detector_lib
+conda install sls_detector_gui
 
-#Install specific release (GLIBC2.14)
-conda install sls_detector_software=3.1.0
+#Install specific release
+conda install sls_detector_lib=4.0.0
+conda install sls_detector_gui=4.0.0
 
-#Scientific Linux 6 version (GLIBC2.12)
-conda install sls_detector_software=SL6_3.1.0
 \end{verbatim}
  \item The package including Python interface
 \begin{verbatim}
@@ -127,11 +132,9 @@ conda config --add channels sls_detector
 #Install latest version
 conda install sls_detector
 
-#Install specific release (GLIBC2.14)
-conda install sls_detector=3.1.0
+#Install specific release 
+conda install sls_detector=4.0.0
 
-#Scientific Linux 6 version (GLIBC2.12)
-conda install sls_detector=SL6_3.1.0
 \end{verbatim}
 \end{itemize}
 
@@ -148,13 +151,13 @@ acquisition system, or if one wants to download the source code and compile.
 \begin{verbatim}
 #Clone source code with specific release
 git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch
-3.1.0
+4.0.0
 \end{verbatim}
  \item The package including Python interface
 \begin{verbatim}
 #Clone source code with specific release
 git clone https://github.com/slsdetectorgroup/sls_detector.git --branch
-3.1.0
+4.0.0
 \end{verbatim}
 \end{itemize}
 
@@ -366,7 +369,7 @@ source directory.
  $ cd ..
  $ mkdir slsDetectorPackage-build
  $ cd slsDetectorPackage-build
- $ cmake ../slsDetectorPackage  -DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=OFF 
+ $ cmake ../slsDetectorPackage  -DCMAKE_BUILD_TYPE=Debug -DSLS_USE_HDF5=OFF 
  $ make
 \end{verbatim}
 
@@ -374,7 +377,7 @@ Use the following as an example to compile statically and using specific hdf5
 folder 
 \begin{verbatim}
  $ HDF5_ROOT=/opt/hdf5v1.10.0 cmake ../slsDetectorPackage
--DCMAKE_BUILD_TYPE=Debug -DUSE_HDF5=ON
+-DCMAKE_BUILD_TYPE=Debug -DSLS_USE_HDF5=ON
 \end{verbatim}
 
 After compiling, the libraries and executables will be found at `bin` directory 
@@ -437,14 +440,11 @@ the SLS Detector Package or a different detector type.
 One can use the \verb=cleansharedmemory.sh= script available under the
 slsDetector Package.
 
-One can also just use the following commands to clean the shared memory
-segments one by one.
-\begin{verbatim}
-#displays list of shared memeory segments 
-ipcs -m
-#remove segments that have nattach equal to zero. They key is the first column
-ipcrm -M [key]
-\end{verbatim}
+One can also just delete the files that are typically located under /dev/shm/ folder
+and starts with slsDetectorPackage.
+
+One no longer has to delete segments using ipcs.
+
 
 \section{Software Upgrade}
 
@@ -544,14 +544,14 @@ detector board the programming files and/or software package provided by
 the SLS Detectors group.
 
 \subsubsection{GOTTHARD Firmware}
-\textit{For SLS Detector Package v3.1.0} \\
+\textit{For SLS Detector Package v4.0.0} \\
 \indent Minimum compatible version: \\
 \indent \indent 11.01.2013 \\
 \indent Latest version:	\\
-\indent \indent 08.02.2018 (50um and 25um Master) \\
+\indent \indent 08.02.2018 (50um) \\
+\indent \indent 08.02.2018 (25 um Master) \\
 \indent \indent 09.02.2018 (25 um Slave) \\
 
-
 Normally, the firmware will be upgraded by us as it requires programming the
 FPGA via the USB-Blaster.
 
@@ -636,9 +636,9 @@ detector board the programming files and/or software package provided by
 the SLS Detectors group.
 
 \subsubsection{EIGER Firmware}
-\textit{For SLS Detector Package v3.1.0} \\
-\indent Minimum compatible version:  16 \\
-\indent Latest version:	20  \\
+\textit{For SLS Detector Package v4.0.0} \\
+\indent Minimum compatible version:  22 \\
+\indent Latest version:	22  \\
 
 
 \begin{enumerate}
@@ -647,6 +647,20 @@ Detector Group.
   \item If one does not have the bcp script, that should also be obtained from
 the SLS Detector Group. It is required to program the bit files and requires
 that tftp be installed on the pc.
+  \item Bring the detector into programmable mode by either of the following ways.
+Both ways end up in just the central LED blinking.
+  \begin{enumerate}
+    \item hard reset on the back panel boards resulting in blinking LEDS 
+    \item by having the following program running in the background. 
+    \begin{verbatim}
+    boot_recovery
+    \end{verbatim}
+\end{enumerate}
+  \item Start a terminal for each half module and run the following to see 
+progress.
+\begin{verbatim}
+	nc -p 3000 -u bebxxx 3000 
+\end{verbatim}
   \item Run the following to update firmware
 \begin{verbatim}
  #update back end fpga
@@ -715,9 +729,9 @@ detector board the programming files and/or software package provided by
 the SLS Detectors group.
 
 \subsubsection{JUNGFRAU Firmware}
-\textit{For SLS Detector Package v3.1.0} \\
-\indent Minimum compatible version: 13.11.2017 \\
-\indent Latest version: 13.11.2017 \\
+\textit{For SLS Detector Package v4.0.0} \\
+\indent Minimum compatible version: 15.06.2018 \\
+\indent Latest version: 15.06.2018 \\
 
 
 At times, one has to update the firmware, which then also requires updating the
@@ -733,7 +747,7 @@ Detector Group.
   \item Update the latest SLS Detector package installed.
   \item Update the on-board software as per the instructions in the next
 section.
-  \item Start the on-board server in debug mode:
+  \item Start the on-board server in update mode:
   \begin{enumerate}
     \item Connect to the blackfin on the detector\\ 
 \verb=telnet bchipxxx=
@@ -743,10 +757,10 @@ section.
       \item Comment out the line
 \verb=#ttyS0::respawn:/jungfrauDetectorServervxxx= 
       \item Reboot blackfin using \verb=reboot=
-      \item Run \verb=ps= to ensure no gotthardDetectorServers are running
+      \item Run \verb=ps= to ensure no jungfrauDetectorServers are running
     \end{enumerate}
-    \item Start the server in debug mode using: \\
-\verb=./jungfrauDetectorServerxxx -debug= \\
+    \item Start the server in update mode using: \\
+\verb=./jungfrauDetectorServerxxx -update= \\
     Leave this console on to come back to it later.
   \end{enumerate}
   \item From the command line of the pc, clear shared memory \\
@@ -759,7 +773,7 @@ script in \verb=slsDetectorPackage/cleansharedmemory.sh=
 \verb=./sls_detector_put programfpga xxx.pof= 
   \item Once the programming is done:
   \begin{enumerate}
-    \item Switch to the console that has the debug server running and kill it
+    \item Switch to the console that has the update server running and kill it
 using Ctrl+C and ensure no jungfrauDetectorServers are
 running
     \item Restart the new server to see if it runs with the new firmware \\

python/CMakeLists.txt

@@ -0,0 +1,39 @@
+add_subdirectory(pybind11)
+pybind11_add_module(_sls_detector src/main.cpp)
+
+target_link_libraries(_sls_detector PUBLIC 
+                        slsDetectorShared
+                        slsReceiverShared
+                        slsSupportLib )  
+
+set_target_properties(_sls_detector PROPERTIES
+                        LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
+                    )
+
+#Copy Python code 
+set( PYTHON_FILES
+    __init__.py
+    adcs.py
+    dacs.py
+    decorators.py
+    detector_property.py
+    detector.py
+    eiger.py
+    errors.py
+    experimental.py
+    jungfrau_ctb.py
+    jungfrau.py
+    registers.py
+    utils.py
+
+)
+
+foreach(FILE ${PYTHON_FILES})
+    configure_file( sls_detector/${FILE}  
+    ${CMAKE_BINARY_DIR}/bin/sls_detector/${FILE}  )
+
+endforeach(FILE ${PYTHON_FILES})
+
+
+configure_file( scripts/basic.py  
+    ${CMAKE_BINARY_DIR}/basic.py  )

python/LICENSE

@@ -0,0 +1,674 @@
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
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+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
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+
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+software and other kinds of works.
+
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+
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+price.  Our General Public Licenses are designed to make sure that you
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python/README.md

@@ -0,0 +1,63 @@
+# sls_detector: Python interface to slsDetectorPackage
+Python interface to the Sls Detector Software. 
+
+### Documentation ###
+Sphinx built documentation is available here:
+[https://slsdetectorgroup.github.io/sls_detector/](https://slsdetectorgroup.github.io/sls_detector/)
+
+
+### Install using conda ###
+
+Binaries are available using conda. This installs both the detector software and the Python
+interface.
+
+```bash
+#Add conda channels
+conda config --add channels conda-forge
+conda config --add channels slsdetectorgroup
+
+#Install latest version
+conda install sls_detector
+
+#Install specific version
+conda install sls_detector=3.0.1
+
+#Scientific Linux 6 version (GLIBC2.12)
+conda install sls_detector=SL6_3.0.1
+```
+
+### Building using conda-build ###
+
+Needs [sls_detector_software](https://github.com/slsdetectorgroup/sls_detector_software) installed.
+
+```bash
+#Clone source code
+git clone https://github.com/slsdetectorgroup/sls_detector.git
+
+#Checkout the branch needed
+git checkout 3.0.1
+
+#Build and install the local version
+conda-build sls_detector
+conda install --use-local sls_detector
+
+
+```
+### Developer build ###
+
+IF you if you are developing and are making constant changes to the code it's a bit cumbersome 
+to build with conda and install. Then an easier way is to build the C/C++ parts in the package 
+directory and temporary add this to the path
+
+```bash
+#in path/to/sls_detector  
+python setup.py build_ext --inplace
+```
+Then in your Python script
+```python
+
+import sys
+sys.path.append('/path/to/sls_detector')
+from sls_detector import Detector
+```
+

python/conda-recepie/build.sh

@@ -0,0 +1,2 @@
+#!/usr/bin/env bash
+${PYTHON} setup.py install     # Python command to install the script

python/conda-recepie/meta.yaml

@@ -0,0 +1,43 @@
+package:
+    name: sls_detector
+    version: refactor
+
+build:
+  number: 0
+
+source:
+    path: ..
+
+requirements:
+    build:
+        - {{ compiler('c') }}
+        - {{ compiler('cxx') }}
+        - cmake
+        - python {{ python }}
+        - libpng >=1.6.32,<1.6.35
+        - setuptools
+        - sls_detector_lib refactor
+        - pyzmq
+        - pybind11 2.2
+
+    host:
+        - python
+        - pybind11 2.2 
+
+    run:
+        - python
+        - numpy
+        - sls_detector_lib refactor
+        - pyzmq
+        - libstdcxx-ng
+        - libgcc-ng
+
+
+test:
+      imports:
+        - sls_detector
+
+
+
+about:
+    summary: "Interacting with detectors"

python/scripts/basic.py

@@ -0,0 +1,5 @@
+from sls_detector import Eiger
+from sls_detector import ExperimentalDetector
+
+d = Eiger()
+e = ExperimentalDetector()

python/setup.py

@@ -0,0 +1,125 @@
+"""
+Setup file for sls_detector
+Build upon the pybind11 example found here: https://github.com/pybind/python_example
+"""
+from setuptools import setup, Extension, find_packages
+from setuptools.command.build_ext import build_ext
+import sys
+import setuptools
+import os
+
+__version__ = 'refactor'
+
+
+def get_conda_path():
+    """
+    Keep this a function if we need some fancier logic later
+    """
+    print('Prefix: ', os.environ['CONDA_PREFIX'])
+    return os.environ['CONDA_PREFIX']
+
+
+class get_pybind_include(object):
+    """Helper class to determine the pybind11 include path
+    The purpose of this class is to postpone importing pybind11
+    until it is actually installed, so that the ``get_include()``
+    method can be invoked. """
+
+    def __init__(self, user=False):
+        self.user = user
+
+    def __str__(self):
+        import pybind11
+        return pybind11.get_include(self.user)
+
+
+ext_modules = [
+    Extension(
+        '_sls_detector',
+        ['src/main.cpp'],
+        include_dirs=[
+            # Path to pybind11 headers
+            get_pybind_include(),
+            get_pybind_include(user=True),
+            os.path.join(get_conda_path(), 'include/slsDetectorPackage'),
+
+        ],
+        libraries=['SlsDetector', 'SlsReceiver', 'zmq'],
+        library_dirs=[
+            os.path.join(get_conda_path(), 'lib'),
+            os.path.join(get_conda_path(), 'bin'),
+        ],
+
+        language='c++'
+    ),
+]
+
+
+# As of Python 3.6, CCompiler has a `has_flag` method.
+# cf http://bugs.python.org/issue26689
+def has_flag(compiler, flagname):
+    """Return a boolean indicating whether a flag name is supported on
+    the specified compiler.
+    """
+    import tempfile
+    with tempfile.NamedTemporaryFile('w', suffix='.cpp') as f:
+        f.write('int main (int argc, char **argv) { return 0; }')
+        try:
+            compiler.compile([f.name], extra_postargs=[flagname])
+        except setuptools.distutils.errors.CompileError:
+            return False
+    return True
+
+
+def cpp_flag(compiler):
+    """Return the -std=c++[11/14] compiler flag.
+    The c++14 is prefered over c++11 (when it is available).
+    """
+    if has_flag(compiler, '-std=c++14'):
+        return '-std=c++14'
+    elif has_flag(compiler, '-std=c++11'):
+        return '-std=c++11'
+    else:
+        raise RuntimeError('Unsupported compiler -- at least C++11 support '
+                           'is needed!')
+
+
+class BuildExt(build_ext):
+    """A custom build extension for adding compiler-specific options."""
+    c_opts = {
+        'msvc': ['/EHsc'],
+        'unix': [],
+    }
+
+    if sys.platform == 'darwin':
+        c_opts['unix'] += ['-stdlib=libc++', '-mmacosx-version-min=10.7']
+
+    def build_extensions(self):
+        ct = self.compiler.compiler_type
+        opts = self.c_opts.get(ct, [])
+        if ct == 'unix':
+            opts.append('-DVERSION_INFO="%s"' % self.distribution.get_version())
+            opts.append(cpp_flag(self.compiler))
+            if has_flag(self.compiler, '-fvisibility=hidden'):
+                opts.append('-fvisibility=hidden')
+        elif ct == 'msvc':
+            opts.append('/DVERSION_INFO=\\"%s\\"' % self.distribution.get_version())
+        for ext in self.extensions:
+            ext.extra_compile_args = opts
+        build_ext.build_extensions(self)
+
+
+setup(
+    name='sls_detector',
+    version=__version__,
+    author='Erik Frojdh',
+    author_email='erik.frojdh@psi.ch',
+    url='https://github.com/slsdetectorgroup/sls_detector',
+    description='Detector API for SLS Detector Group detectors',
+    long_description='',
+    packages=find_packages(exclude=['contrib', 'docs', 'tests']),
+    ext_modules=ext_modules,
+    install_requires=['pybind11>=2.2'],
+    cmdclass={'build_ext': BuildExt},
+    zip_safe=False,
+)

python/simple-integration-tests/eiger/config_test.py

@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Created on Tue Nov 14 16:49:07 2017
+
+@author: l_frojdh
+"""
+
+fw_version = 23
+detector_type = 'Eiger'
+known_hostnames = ['beb083', 'beb098']
+image_size = (512,1024) #rows, cols
+module_geometry = (1,2) #horizontal, vertical
+
+#Remember to change these in the settings file as well!
+settings_path = '/home/l_frojdh/slsDetectorPackage/settingsdir/eiger'
+file_path = '/home/l_frojdh/out'

python/simple-integration-tests/eiger/fixtures.py

@@ -0,0 +1,27 @@
+import pytest
+
+from sls_detector import Detector
+
+@pytest.fixture
+def detector():
+    from sls_detector import Detector
+    return Detector()
+
+@pytest.fixture
+def eiger():
+    from sls_detector import Eiger
+    d = Eiger()
+    d.n_frames = 1
+    d.exposure_time = 1
+    d.file_write = False
+    return d
+
+
+@pytest.fixture
+def jungfrau():
+    from sls_detector import Jungfrau
+    return Jungfrau()
+
+detector_type = Detector().detector_type
+eigertest = pytest.mark.skipif(detector_type != 'Eiger', reason = 'Only valid for Eiger')
+jungfrautest = pytest.mark.skipif(detector_type != 'Jungfrau', reason = 'Only valid for Jungfrau')

python/simple-integration-tests/eiger/test.config

@@ -0,0 +1,33 @@
+detsizechan 1024 512
+
+#hostname for top+bottom+
+hostname beb083+beb098+
+
+#top
+0:rx_tcpport 1954
+0:lock 0
+0:rx_udpport 50010
+0:rx_udpport2 50011
+0:rx_hostname mpc2048
+0:flippeddatax 0
+
+#bottom
+1:rx_tcpport 1955
+1:lock 0
+1:rx_udpport 50004
+1:rx_udpport2 50005
+1:rx_hostname mpc2048
+1:flippeddatax 1
+
+settingsdir /home/l_frojdh/slsDetectorPackage/settingsdir/eiger
+outdir /home/l_frojdh/out
+vthreshold 1500
+vtr 4000
+dr 32
+
+threaded 1
+tengiga 0
+vhighvoltage 150
+iodelay 660
+
+#gappixels 1

python/simple-integration-tests/eiger/test.par

@@ -0,0 +1,2 @@
+vrf 3000
+vthreshold 1800

python/simple-integration-tests/eiger/test_dynamic_range.py

@@ -0,0 +1,44 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Testing setting dynamic range for Eiger. 
+If the detector is not Eiger the tests are skipped
+"""
+import pytest
+import config_test
+from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
+from sls_detector.errors import DetectorValueError
+
+
+@eigertest
+def test_set_dynamic_range_and_make_acq(eiger):
+    eiger.exposure_time = 0.5
+    eiger.n_frames = 2
+    for dr in [4, 8, 16, 32]:
+        eiger.dynamic_range = dr
+        assert eiger.dynamic_range == dr
+        eiger.acq()
+        assert eiger.frames_caught == 2
+
+
+@eigertest
+def test_set_dynamic_range_raises(eiger):
+    with pytest.raises(DetectorValueError):
+        eiger.dynamic_range = 1
+    with pytest.raises(DetectorValueError):
+        eiger.dynamic_range = 75
+    with pytest.raises(DetectorValueError):
+        eiger.dynamic_range = -3
+    with pytest.raises(DetectorValueError):
+        eiger.dynamic_range = 12
+
+@eigertest
+def test_set_dynamic_range_reduces_speed(eiger):
+    eiger.readout_clock = 'Full Speed'
+    eiger.dynamic_range = 32
+    assert eiger.dynamic_range == 32
+    assert eiger.readout_clock == 'Quarter Speed'
+
+    eiger.dynamic_range = 16
+    assert eiger.dynamic_range == 16
+    assert eiger.readout_clock == 'Half Speed'

python/simple-integration-tests/eiger/test_eiger_specific.py

@@ -0,0 +1,119 @@
+import pytest
+import config_test
+import time
+from sls_detector.errors import DetectorValueError
+
+from fixtures import eiger, eigertest
+
+
+
+
+
+@eigertest
+def test_set_matrix_reset(eiger):
+    eiger.eiger_matrix_reset = False
+    assert eiger.eiger_matrix_reset == False
+    eiger.eiger_matrix_reset = True
+    assert eiger.eiger_matrix_reset == True
+
+@eigertest
+def test_set_tx_delay_left_single(eiger):
+    eiger.tx_delay.left[0] = 130
+    assert eiger.tx_delay.left[0] == 130
+    eiger.tx_delay.left[1] = 150
+    assert eiger.tx_delay.left[1] == 150
+    eiger.tx_delay.left[0] = 0
+    eiger.tx_delay.left[1] = 0
+    assert eiger.tx_delay.left[0] == 0
+    assert eiger.tx_delay.left[1] == 0
+
+@eigertest
+def test_set_tx_delay_right_single(eiger):
+    eiger.tx_delay.right[0] = 130
+    assert eiger.tx_delay.right[0] == 130
+    eiger.tx_delay.right[1] = 150
+    assert eiger.tx_delay.right[1] == 150
+    eiger.tx_delay.right[0] = 0
+    eiger.tx_delay.right[1] = 0
+    assert eiger.tx_delay.right[0] == 0
+    assert eiger.tx_delay.right[1] == 0
+
+@eigertest
+def test_set_tx_delay_frame_single(eiger):
+    eiger.tx_delay.frame[0] = 500
+    eiger.tx_delay.frame[1] = 600
+    assert eiger.tx_delay.frame[0] == 500
+    assert eiger.tx_delay.frame[1] == 600
+
+    eiger.tx_delay.frame[0] = 0
+    eiger.tx_delay.frame[1] = 0
+    assert eiger.tx_delay.frame[0] == 0
+    assert eiger.tx_delay.frame[1] == 0
+
+@eigertest
+def test_tx_delay_from_list(eiger):
+    eiger.tx_delay.left = [123,456]
+    assert eiger.tx_delay.left[:] == [123,456]
+    eiger.tx_delay.right = [789,100]
+    assert eiger.tx_delay.right[:] == [789,100]
+    eiger.tx_delay.frame = [1000,90000]
+    assert eiger.tx_delay.frame[:] == [1000,90000]
+
+    eiger.tx_delay.left = [0, 0]
+    eiger.tx_delay.right = [0, 0]
+    eiger.tx_delay.frame = [0, 0]
+    assert eiger.tx_delay.left[:] == [0, 0]
+    assert eiger.tx_delay.right[:] == [0, 0]
+    assert eiger.tx_delay.frame[:] == [0, 0]
+
+@eigertest
+def test_acitve(eiger):
+    eiger.file_write = False
+    eiger.reset_frames_caught()
+    eiger.active[1] = False
+    eiger.acq()
+    assert eiger._api.getFramesCaughtByReceiver(1) == 0
+    assert eiger._api.getFramesCaughtByReceiver(0) == 1
+    eiger.active = True
+    time.sleep(0.5)
+    eiger.acq()
+    assert eiger.frames_caught == 1
+
+@eigertest
+def test_set_default_settings(eiger):
+    eiger.default_settings()
+    assert eiger.n_frames == 1
+    assert eiger.exposure_time == 1
+    assert eiger.period == 0
+    assert eiger.n_cycles == 1
+    assert eiger.dynamic_range == 16
+
+@eigertest
+def test_flowcontrol10g(eiger):
+    eiger.flowcontrol_10g = True
+    assert eiger.flowcontrol_10g == True
+    eiger.flowcontrol_10g = False
+    assert eiger.flowcontrol_10g == False
+
+@eigertest
+def test_read_vcmp(eiger):
+    eiger.vthreshold = 1500
+    assert eiger.vcmp[:]  == [1500]*4*eiger.n_modules
+
+@eigertest
+def test_set_vcmp(eiger):
+    eiger.vcmp = [1000,1100,1200,1300,1400,1500,1600,1700]
+    assert eiger.vcmp[:] == [1000,1100,1200,1300,1400,1500,1600,1700]
+    eiger.vthreshold = 1500
+
+#Disabled only works with receiver on the same pc
+# @eigertest
+# def test_setup500k():
+#     from sls_detector import Eiger, free_shared_memory
+#     free_shared_memory()
+#     d = Eiger()
+#     d.setup500k(config_test.known_hostnames)
+#     d.acq()
+#     assert d.rx_tcpport == [1954,1955]
+#     assert d.frames_caught == 1
+#     #could assert more setting but if the frame is caught it worked...

python/simple-integration-tests/eiger/test_firmware.py

@@ -0,0 +1,129 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Tests specific for the firmware.
+
+Check that register values are correct after starting an exposure
+
+0x4 exposure time
+0x5 period
+0x6 sub exposure time
+
+"""
+import pytest
+import config_test
+from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
+from sls_detector.errors import DetectorValueError
+from sls_detector.utils import  eiger_register_to_time
+
+# testdata_exptimes = [0.001, 0.002, 0.0236]
+
+@eigertest
+def test_short_exposure_time(eiger):
+    t = 1.23
+    eiger.exposure_time = t
+    eiger.file_write = False
+    eiger.start_detector()
+    eiger.stop_detector()
+
+    #Register 0x4 holds exposure time
+    reg = eiger.register[0x4]
+    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
+
+@eigertest
+def test_short_minimal_exposure_time(eiger):
+    t = 1e-8
+    eiger.exposure_time = t
+    eiger.file_write = False
+    eiger.start_detector()
+    eiger.stop_detector()
+
+    #Register 0x4 holds exposure time
+    reg = eiger.register[0x4]
+    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
+
+
+@eigertest
+def test_long_exposure_time(eiger):
+    t = 623
+    eiger.exposure_time = t
+    eiger.file_write = False
+    eiger.start_detector()
+    eiger.stop_detector()
+
+    # Register 0x4 holds exposure time
+    reg = eiger.register[0x4]
+    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
+
+
+@eigertest
+def test_short_period(eiger):
+    t = 0.1
+    eiger.exposure_time = 0.001
+    eiger.period = t
+    eiger.file_write = False
+    eiger.start_detector()
+    eiger.stop_detector()
+
+    # Register 0x5 holds period
+    reg = eiger.register[0x5]
+    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
+
+
+@eigertest
+def test_long_period(eiger):
+    t = 8900
+    eiger.exposure_time = 0.001
+    eiger.period = t
+    eiger.file_write = False
+    eiger.start_detector()
+    eiger.stop_detector()
+
+    # Register 0x5 holds period
+    reg = eiger.register[0x5]
+    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
+
+@eigertest
+def test_zero_period_with_acq(eiger):
+    t = 0
+    eiger.exposure_time = 0.001
+    eiger.period = t
+    eiger.file_write = False
+    eiger.start_detector()
+    eiger.stop_detector()
+
+    # Register 0x5 holds period
+    reg = eiger.register[0x5]
+    assert pytest.approx(t, 1e-9) == eiger_register_to_time(reg)
+
+
+testdata_times = [0.001, 0.002, 0.0236]
+@eigertest
+@pytest.mark.parametrize("t", testdata_times)
+def test_subexptime(eiger,t):
+    eiger.sub_exposure_time = t
+    eiger.file_write = False
+    eiger.start_detector()
+    eiger.stop_detector()
+
+    # Register 0x6 holds sub exposure time
+    # time is stored straight as n clocks
+    reg = eiger.register[0x6]
+    assert pytest.approx(t, 1e-9) == reg/100e6
+
+
+@eigertest
+@pytest.mark.parametrize("t", testdata_times)
+def test_subdeadtime(eiger, t):
+    eiger.sub_deadtime = t
+    eiger.sub_exposure_time = 1
+    eiger.sub_exposure_time = 0.001
+    eiger.file_write = False
+    eiger.start_detector()
+    eiger.stop_detector()
+
+    # Register 0x7 holds sub period
+    # time is stored straight as n clocks
+    # exptime+deadtime
+    reg = eiger.register[0x7]
+    assert pytest.approx(t, 1e-7) == (reg/100e6-0.001)

python/simple-integration-tests/eiger/test_general.py

@@ -0,0 +1,187 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+General tests for the Detector class. Should not depend on the connected detector. Aim is to have tests working
+for both Jungfrau and Eiger.
+
+NOTE! Uses hostnames from config_test
+"""
+
+import pytest
+import config_test
+from fixtures import detector
+from sls_detector.errors import DetectorValueError, DetectorError
+
+
+
+def test_error_handling(detector):
+    with pytest.raises(DetectorError):
+        detector._provoke_error()
+
+def test_not_busy(detector):
+    """Test that the detector is not busy from the start"""
+    assert detector.busy == False
+
+def test_reset_frames_caught(detector):
+    detector.file_write = False
+    detector.acq()
+    assert detector.frames_caught == 1
+    detector.reset_frames_caught()
+    assert detector.frames_caught == 0
+
+def test_set_busy_true_then_false(detector):
+    """Test both cases of assignment"""
+    detector.busy = True
+    assert detector.busy == True
+    detector.busy = False
+    assert detector.busy == False
+
+def test_set_readout_speed(detector):
+    for s in ['Full Speed', 'Half Speed', 'Quarter Speed', 'Super Slow Speed']:
+        detector.readout_clock = s
+        assert detector.readout_clock == s
+
+def test_wrong_speed_raises_error(detector):
+    with pytest.raises(KeyError):
+        detector.readout_clock = 'Something strange'
+
+def test_readout_clock_remains(detector):
+    s = detector.readout_clock
+    try:
+        detector.readout_clock = 'This does not exists'
+    except KeyError:
+        pass
+    assert detector.readout_clock == s
+
+def test_len_method(detector):
+    """to test this we need to know the length, this we get from the configuration of hostnames"""
+    assert len(detector) == len(config_test.known_hostnames)
+
+def test_setting_n_cycles_to_zero_gives_error(detector):
+    with pytest.raises(DetectorValueError):
+        detector.n_cycles = 0
+
+def test_setting_n_cycles_to_negative_gives_error(detector):
+    with pytest.raises(DetectorValueError):
+        detector.n_cycles = -50
+
+def test_set_cycles_frome_one_to_ten(detector):
+    for i in range(1,11):
+        detector.n_cycles = i
+        assert detector.n_cycles == i
+        detector.n_cycles = 1
+        assert detector.n_cycles == 1
+
+def test_get_detector_type(detector):
+    assert detector.detector_type == config_test.detector_type
+
+
+
+def test_set_file_index(detector):
+    detector.file_index = 5
+    assert detector.file_index == 5
+
+def test_negative_file_index_raises(detector):
+    with pytest.raises(ValueError):
+        detector.file_index = -8
+
+def test_setting_file_name(detector):
+    fname = 'hej'
+    detector.file_name = fname
+    assert detector.file_name == fname
+
+def test_set_file_write(detector):
+    detector.file_write = True
+    assert detector.file_write == True
+
+    detector.file_write = False
+    assert detector.file_write == False
+
+
+
+def test_set_high_voltage(detector):
+    detector.high_voltage = 55
+    assert detector.high_voltage == 55
+
+def test_negative_voltage_raises(detector):
+    with pytest.raises(DetectorValueError):
+        detector.high_voltage = -5
+
+def test_high_voltage_raises_on_to_high(detector):
+    with pytest.raises(DetectorValueError):
+        detector.high_voltage = 500
+
+
+
+def test_get_image_size(detector):
+    """Compares with the size in the config file"""
+    assert detector.image_size.rows == config_test.image_size[0]
+    assert detector.image_size.cols == config_test.image_size[1]
+
+def test_get_module_geometry(detector):
+    """Compares with the size in the config file"""
+    assert detector.module_geometry.horizontal == config_test.module_geometry[0]
+    assert detector.module_geometry.vertical == config_test.module_geometry[1]
+
+def test_set_nframes(detector):
+    detector.n_frames = 5
+    assert detector.n_frames == 5
+    detector.n_frames = 1
+    assert detector.n_frames == 1
+
+def test_set_n_measurements(detector):
+    detector.n_measurements = 7
+    assert detector.n_measurements == 7
+    detector.n_measurements = 1
+    assert detector.n_measurements == 1
+
+def test_negative_nframes_raises(detector):
+    with pytest.raises(DetectorValueError):
+        detector.n_frames = -2
+
+def test_nmodules(detector):
+    """Assume that the number of modules should be the same as the number of hostnames"""
+    assert detector.n_modules == len(config_test.known_hostnames)
+
+def test_is_detector_online(detector):
+    assert detector.online == True
+
+def test_set_online(detector):
+    detector.online = False
+    assert detector.online == False
+    detector.online = True
+    assert detector.online == True
+
+
+
+def test_receiver_is_online(detector):
+    assert detector.receiver_online == True
+
+def test_set_receiver_online(detector):
+    detector.receiver_online = False
+    assert detector.receiver_online == False
+    detector.receiver_online = True
+    assert detector.receiver_online == True
+
+def test_set_receiver_online_raises_on_non_bool(detector):
+    with pytest.raises(TypeError):
+        detector.receiver_online = 'probably not this'
+
+
+
+
+def test_set_period(detector):
+    detector.period = 5.123
+    assert detector.period == 5.123
+    detector.period = 0
+    assert detector.period == 0
+
+
+
+def test_set_timing_mode(detector):
+    detector.timing_mode = 'trigger'
+    assert detector.timing_mode == 'trigger'
+    detector.timing_mode = 'auto'
+    assert detector.timing_mode == 'auto'
+
+

python/simple-integration-tests/eiger/test_load_config.py

@@ -0,0 +1,38 @@
+
+import pytest
+import config_test
+import os
+dir_path = os.path.dirname(os.path.realpath(__file__))
+from sls_detector.detector import element_if_equal
+from sls_detector.errors import DetectorValueError
+
+
+from fixtures import eiger, eigertest
+
+
+@eigertest
+def test_load_config_file_eiger(eiger):
+    """Load a settings file and assert all settings"""
+    eiger.load_config(os.path.join(dir_path, 'test.config'))
+
+
+    assert eiger.rx_tcpport == [1954, 1955]
+    assert eiger.lock == False
+    assert eiger.rx_udpport == [50010, 50011, 50004, 50005]
+    assert eiger.rx_hostname == 'mpc2048'
+    assert eiger.flipped_data_x[:] == [False, True]
+    assert eiger.settings_path == config_test.settings_path
+    assert eiger.file_path == config_test.file_path
+    assert eiger.vthreshold == 1500
+    assert element_if_equal(eiger.dacs.vtr[:]) == 4000
+    assert eiger.dynamic_range == 32
+    assert eiger.tengiga == False
+    assert eiger.high_voltage == 150
+    assert element_if_equal(eiger.dacs.iodelay[:]) == 660
+
+@eigertest
+def test_load_parameters_file_eiger(eiger):
+    """Load a parametes file and assert the settings in the file"""
+    eiger.load_parameters(os.path.join(dir_path, 'test.par'))
+    assert element_if_equal(eiger.dacs.vrf[:]) == 3000
+    assert eiger.vthreshold == 1800

python/simple-integration-tests/eiger/test_network.py

@@ -0,0 +1,81 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Tests for network related functions of the detector
+"""
+import pytest
+import config_test
+from fixtures import eiger, eigertest, detector
+
+
+# def test_last_client(detector):
+#     import socket
+#     # We probably should check for multiple ip's
+#     myip = socket.gethostbyname_ex(socket.gethostname())[-1][0]
+#     assert detector.last_client_ip == myip
+
+def test_get_hostname(detector):
+    for detector_host, config_host in zip(detector.hostname, config_test.known_hostnames):
+        assert detector_host == config_host
+
+def test_hostname_has_same_length_as_n_modules(detector):
+    assert len(detector.hostname) == detector.n_modules
+
+
+# # def test_get_receiver_hostname(detector):
+# #     """Assume that the receiver are on the local computer"""
+# #     import socket
+# #     host = socket.gethostname().split('.')[0]
+# #     assert detector.rx_hostname == host
+
+# def test_set_receiver_hostname(detector):
+#     import socket
+#     host = socket.gethostname().split('.')[0]
+#     phony_host = 'madeup'
+#     detector.rx_hostname = phony_host
+#     assert detector.rx_hostname == phony_host
+#     detector.rx_hostname = host
+#     assert detector.rx_hostname == host
+
+@eigertest
+def test_set_rx_zmqport_single_value(eiger):
+    eiger.rx_zmqport = 35000
+    assert eiger.rx_zmqport == [35000, 35001, 35002, 35003]
+
+@eigertest
+def test_set_rx_zmqport_list(eiger):
+    eiger.rx_zmqport = [37000, 38000]
+    assert eiger.rx_zmqport == [37000, 37001, 38000, 38001]
+
+@eigertest
+def test_set_rx_updport(eiger):
+    ports = [60010,60011,60012,60013]
+    eiger.rx_udpport = ports
+    assert eiger.rx_udpport == ports
+    eiger.acq()
+    assert eiger.frames_caught == 1
+
+@eigertest
+def test_rx_tcpport(eiger):
+    ports = eiger.rx_tcpport
+    eiger.rx_tcpport = [2000,2001]
+    assert eiger.rx_tcpport == [2000,2001]
+    eiger.rx_tcpport = ports
+    assert eiger.rx_tcpport == ports
+    eiger.acq()
+    assert eiger.frames_caught == 1
+
+# @eigertest
+# @pytest.mark.new
+# def test_enable_disable_tengiga(eiger):
+#     """
+#     This test does not check for dat on the 10Gbit link, only the set and get functions
+#     """
+#     eiger.tengiga = True
+#     assert eiger.tengiga == True
+#     eiger.tengiga = False
+#     assert eiger.tengiga == False
+
+
+
+#TODO! Add test for Jungfrau

python/simple-integration-tests/eiger/test_paths_and_files.py

@@ -0,0 +1,54 @@
+import pytest
+import config_test
+from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
+from sls_detector.errors import DetectorValueError
+
+
+
+
+@eigertest
+@pytest.mark.local
+def test_set_path(eiger, tmpdir):
+    import os
+    path = os.path.join(tmpdir.dirname, tmpdir.basename)
+    eiger.file_path = path
+    assert eiger.file_path == path
+
+@eigertest
+@pytest.mark.local
+def test_set_path_and_write_files(eiger, tmpdir):
+    import os
+    prefix = 'testprefix'
+    path = os.path.join(tmpdir.dirname, tmpdir.basename)
+    eiger.file_path = path
+    eiger.file_write = True
+    eiger.exposure_time = 0.1
+    eiger.n_frames = 1
+    eiger.timing_mode = 'auto'
+    eiger.file_name = prefix
+    eiger.file_index = 0
+    eiger.acq()
+
+    files = [f.basename for f in tmpdir.listdir()]
+
+    assert len(files) == 5
+    assert (prefix+'_d0_0.raw' in files) == True
+    assert (prefix+'_d1_0.raw' in files) == True
+    assert (prefix+'_d2_0.raw' in files) == True
+    assert (prefix+'_d3_0.raw' in files) == True
+
+def test_set_discard_policy(detector):
+    detector.frame_discard_policy = 'nodiscard'
+    assert detector.frame_discard_policy == 'nodiscard'
+    detector.frame_discard_policy = 'discardpartial'
+    assert detector.frame_discard_policy == 'discardpartial'
+    detector.frame_discard_policy = 'discardempty'
+    assert detector.frame_discard_policy == 'discardempty'
+
+def test_set_discard_policy_raises(detector):
+    with pytest.raises(ValueError):
+        detector.frame_discard_policy = 'adjfvadksvsj'
+
+def test_set_frames_perfile(detector):
+    detector.frames_per_file = 5000
+    assert detector.frames_per_file == 5000

python/simple-integration-tests/eiger/test_threshold.py

@@ -0,0 +1,47 @@
+import pytest
+import config_test
+import time
+from sls_detector.errors import DetectorValueError
+import os
+from fixtures import eiger, eigertest
+
+
+testdata_th = [0,333,500,1750,2000]
+
+@eigertest
+@pytest.mark.parametrize("th", testdata_th)
+def test_set_vthreshold(eiger, th):
+    eiger.vthreshold = th
+    assert eiger.vthreshold == th
+
+@eigertest
+def test_vthreshold_with_different_vcmp(eiger):
+    #When vcmp is different for the chip vthreshold should return -1
+    eiger.vthreshold = 1500
+    eiger.dacs.vcmp_ll = 1400
+    assert eiger.vthreshold == -1
+
+@eigertest
+def test_set_settingsdir(eiger):
+    path = os.path.dirname( os.path.realpath(__file__) )
+    path = os.path.join(path, 'settingsdir')
+    eiger.settings_path = path
+    assert eiger.settings_path == path
+
+@eigertest
+def test_set_trimmed_energies(eiger):
+    en = [5000,6000,7000]
+    eiger.trimmed_energies = en
+    assert eiger.trimmed_energies == en
+
+
+#TODO! add checks for vcmp as well and improve naming
+#TODO! remove dependency on beb number
+testdata_en = [(5000, 500),(5500,750),(6000,1000),(6200,1100),(7000,1500)]
+@eigertest
+@pytest.mark.parametrize('val', testdata_en)
+def test_set_energy_threshold(eiger, val):
+    eiger.settings = 'standard'
+    eiger.threshold = val[0]
+    assert eiger.threshold == val[0]
+    assert eiger.dacs.vrf[0] == val[1]

python/simple-integration-tests/eiger/test_time.py

@@ -0,0 +1,136 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Tests regarding exposure time and period of the detector
+Set and get test as well as test for duration and on detector 
+measurement of the time.
+"""
+import pytest
+import config_test
+from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
+from sls_detector.errors import DetectorValueError, DetectorError
+import time
+
+
+testdata_times = [1e-8, 0.001, 0.5, 3.125, 5.0, 600, 784]
+@pytest.mark.parametrize("t", testdata_times)
+def test_set_and_get_exposure_time(eiger, t):
+    """
+    Test that the exposure time we set in the detector
+    is the same as the one read back
+    """
+    eiger.exposure_time = t
+    assert eiger.exposure_time == t
+
+
+def test_negative_exposure_time_raises_error(eiger):
+    with pytest.raises(DetectorValueError):
+        eiger.exposure_time = -15
+
+
+testdata_times = [0.001, 0.0025, 0.005, 5]
+@pytest.mark.parametrize("t", testdata_times)
+def test_set_subexptime(eiger, t):
+    eiger.sub_exposure_time = t
+    assert eiger.sub_exposure_time == t
+
+
+testdata_times = [-5,6,7,50]
+@pytest.mark.parametrize("t", testdata_times)
+def test_set_subextime_too_large_or_neg(eiger, t):
+    with pytest.raises((DetectorError, DetectorValueError)):
+        eiger.sub_exposure_time = t
+
+
+
+testdata_times = [0.2, 0.5, 1, 2, 5, 7]
+@pytest.mark.slow
+@pytest.mark.parametrize("t", testdata_times)
+def test_measure_exposure_time_from_python(eiger, t):
+    """ 
+    The main idea with this test is to make sure the overhead of a
+    single acq is less than tol[s]. This test also catches stupid bugs
+    that would for example not change the exposure time or make acquire 
+    not blocking. 
+    """
+    tol = 0.5
+    eiger.dynamic_range = 16
+    eiger.file_write = False
+    eiger.n_frames = 1
+    eiger.exposure_time = t
+    assert eiger.exposure_time == t
+    t0 = time.time()
+    eiger.acq()
+    duration = time.time()-t0
+    assert duration < (t+tol)
+
+
+testdata_times = [0.5, 1, 3, 5]
+
+
+@pytest.mark.slow
+@pytest.mark.parametrize("t", testdata_times)
+def test_measure_period_from_python_and_detector(eiger, t):
+    tol = 0.5
+    nframes = 5
+    eiger.dynamic_range = 16
+    eiger.file_write = False
+    eiger.n_frames = nframes
+    eiger.exposure_time = 0.001
+    eiger.period = t
+    t0 = time.time()
+    eiger.acq()
+    duration = time.time()-t0
+    assert duration < t*(nframes-1)+tol
+    for mp in eiger.measured_period:
+        assert pytest.approx(mp, 1e-5) == t
+
+
+testdata_times = [0.001, 0.002, 0.003, 0.005, 0.01]
+@pytest.mark.parametrize("t", testdata_times)
+def test_measure_subperiod_nonparallel(eiger, t):
+    readout_time = 500e-6
+    eiger.dynamic_range = 32
+    eiger.file_write = False
+    eiger.flags = 'nonparallel'
+    eiger.n_frames = 1
+    eiger.period = 0
+    eiger.exposure_time = 0.5
+    eiger.sub_exposure_time = t
+    eiger.sub_deadtime = 0
+    eiger.acq()
+    for mp in eiger.measured_subperiod:
+        assert pytest.approx(mp, abs=1e-5) == t+readout_time
+
+
+@pytest.mark.parametrize("t", testdata_times)
+def test_measure_subperiod_parallel(eiger, t):
+    readout_time = 12e-6
+    eiger.dynamic_range = 32
+    eiger.file_write = False
+    eiger.flags = 'parallel'
+    eiger.n_frames = 1
+    eiger.period = 0
+    eiger.exposure_time = 0.5
+    eiger.sub_exposure_time = t
+    eiger.sub_deadtime = 0
+    eiger.acq()
+    for mp in eiger.measured_subperiod:
+        assert pytest.approx(mp, abs=1e-5) == t+readout_time
+
+
+@pytest.mark.parametrize("t", testdata_times)
+def test_measure_subperiod_parallel_when_changing_deadtime(eiger, t):
+    readout_time = 12e-6
+    exposure_time = 0.001
+    eiger.dynamic_range = 32
+    eiger.file_write = False
+    eiger.flags = 'parallel'
+    eiger.n_frames = 1
+    eiger.period = 0
+    eiger.exposure_time = 0.5
+    eiger.sub_exposure_time = exposure_time
+    eiger.sub_deadtime = t
+    eiger.acq()
+    for mp in eiger.measured_subperiod:
+        assert pytest.approx(mp, abs=1e-5) == t+exposure_time

python/simple-integration-tests/eiger/test_trimbits_and_dacs.py

@@ -0,0 +1,34 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Tests for trimbit and dac related functions
+"""
+import pytest
+import config_test
+from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
+from sls_detector.errors import DetectorValueError
+
+
+@eigertest
+def test_set_trimbits(eiger):
+    """Limited values due to time"""
+    for i in [17, 32, 60]:
+        print(i)
+        eiger.trimbits = i
+        assert eiger.trimbits == i
+
+@eigertest
+def test_set_trimbits_raises_on_too_big(eiger):
+    with pytest.raises(DetectorValueError):
+        eiger.trimbits = 75
+
+@eigertest
+def test_set_trimbits_raises_on_negative(eiger):
+    with pytest.raises(DetectorValueError):
+        eiger.trimbits = -5
+
+
+# @jungfrautest
+# def test_jungfrau(jungfrau):
+#     """Example of a test that is not run with Eiger connected"""
+#     pass

python/simple-integration-tests/eiger/test_version_numbers.py

@@ -0,0 +1,16 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Tests for hostname related functions of the detector
+"""
+import pytest
+import config_test
+from fixtures import detector, eiger, jungfrau, eigertest, jungfrautest
+from sls_detector.errors import DetectorValueError
+
+
+
+def test_firmware_version(detector):
+    assert detector.firmware_version == config_test.fw_version
+
+

python/simple-integration-tests/eiger/write_tb_files.py

@@ -0,0 +1,42 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Created on Tue May 22 14:13:48 2018
+
+@author: l_frojdh
+"""
+import os
+from sls_detector_tools.io import write_trimbit_file
+from sls_detector_tools import mask
+
+energy = [5000, 6000, 7000]
+vrf =     [500, 1000, 1500]
+
+for i,e in enumerate(energy):
+    dacs = np.array(  [[   0.,    0.],   #vsvp
+                       [4000., 4000.],  #vtr
+                       [vrf[i], vrf[i]],  #vrf
+                       [1400., 1400.],  #vrs
+                       [4000., 4000.],  #vsvn
+                       [2556., 2556.],  #vtgstv
+                       [1400., 1400.],  #vcmp_ll
+                       [1500., 1500.],  #vcmp_lr
+                       [4000., 4000.],  #vcall
+                       [1500., 1500.],  #vcmp_rl
+                       [1100., 1100.],  #rxb_rb
+                       [1100., 1100.],  #rxb_lb
+                       [1500., 1500.],  #vcmp_rr
+                       [1500., 1500.],  #vcp
+                       [2000., 2000.],  #vcn
+                       [1550., 1550.],  #vis
+                       [ 660.,  660.],  #iodelay
+                       [   0.,    0.],  #tau
+                       ]) 
+    
+    tb = np.zeros((256,1024))
+    
+    for beb in [83,98]:
+        write_trimbit_file(f'settingsdir/standard/{e}eV/noise.sn{beb:03d}', tb, dacs[:,0])
+#print(os.getcwd())
+    
+#print( os.path.realpath(__file__))

python/simple-integration-tests/jungfrau_0_6/config_test.py

@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Created on Tue Nov 14 16:49:07 2017
+
+@author: l_frojdh
+"""
+
+fw_version = 0x180220
+detector_type = 'Jungfrau'
+known_hostnames = ['bchip038']
+image_size = (512,1024) #rows, cols
+module_geometry = (1,1) #horizontal, vertical
+
+#Remember to change these in the settings file as well!
+settings_path = '/home/l_lopez/projects/slsDetectorPackage/settingsdir/jungfrau'
+file_path = '/home/l_lopez/out'

python/simple-integration-tests/jungfrau_0_6/fixtures.py

@@ -0,0 +1,23 @@
+import pytest
+
+from sls_detector import Detector
+
+@pytest.fixture
+def detector():
+    from sls_detector import Detector
+    return Detector()
+
+@pytest.fixture
+def eiger():
+    from sls_detector import Eiger
+    return Eiger()
+
+
+@pytest.fixture
+def jungfrau():
+    from sls_detector import Jungfrau
+    return Jungfrau()
+
+detector_type = Detector().detector_type
+eigertest = pytest.mark.skipif(detector_type != 'Eiger', reason = 'Only valid for Eiger')
+jungfrautest = pytest.mark.skipif(detector_type != 'Jungfrau', reason = 'Only valid for Jungfrau')

python/simple-integration-tests/jungfrau_0_6/test_main.py

@@ -0,0 +1,17 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+General tests for the Jungfrau detector.
+
+NOTE! Uses hostnames from config_test
+"""
+
+import pytest
+import config_test
+import tests
+
+import os
+dir_path = os.path.dirname(os.path.realpath(__file__))
+
+pytest.main(['-x', '-s', os.path.join(dir_path, 'tests/test_load_config.py')])            #Test 1
+pytest.main(['-x', '-s', os.path.join(dir_path, 'tests/test_overtemperature.py')])        #Test 2

python/simple-integration-tests/jungfrau_0_6/tests/test.config

@@ -0,0 +1,21 @@
+detsizechan 1024 512
+
+settingsdir /home/l_lopez/projects/slsDetectorPackage/settingsdir/jungfrau
+caldir /home/l_lopez/projects/slsDetectorPackage/settingsdir/jungfrau
+lock 0
+
+hostname bchip094+
+
+rx_udpport 1754
+rx_udpip 10.1.1.107
+rx_udpmac 90:E2:BA:9A:4F:D4
+detectorip 10.1.1.9
+detectormac 00:aa:bb:cc:dd:ee
+configuremac 0
+
+powerchip 1
+timing auto
+
+outdir /home/l_lopez/out
+threaded 1
+high

python/simple-integration-tests/jungfrau_0_6/tests/test.par

@@ -0,0 +1 @@
+vhighvoltage 200

python/simple-integration-tests/jungfrau_0_6/tests/test_load_config.py

@@ -0,0 +1,43 @@
+
+import pytest
+import config_test
+import os
+dir_path = os.path.dirname(os.path.realpath(__file__))
+
+from fixtures import jungfrau, jungfrautest
+
+
+def load_config_file_jungfrau_test(jungfrau):
+    """Load a settings file and assert all settings"""
+
+    print('\tStarting load_config_file_jungfrau_test test case')
+
+    jungfrau.free_shared_memory
+    jungfrau.load_config(os.path.join(dir_path, 'test.config'))
+
+    assert jungfrau.lock == False
+    assert jungfrau.rx_udpport == ['1754']
+    assert jungfrau.hostname == ['bchip094']
+    assert jungfrau.firmware_version == config_test.fw_version
+
+    print('\tFinished load_config_file_jungfrau_test test case')
+
+def load_parameters_file_jungfrau_test(jungfrau):
+    """Load a parametes file and assert the settings in the file"""
+
+    print('\tStarting load_parameters_file_jungfrau_test test case')
+
+    jungfrau.load_parameters(os.path.join(dir_path, 'test.par'))
+    assert jungfrau.high_voltage == 200
+
+    print('\tFinished load_parameters_file_jungfrau_test test case')
+
+@jungfrautest
+def test_main(jungfrau):
+    print('\nTesting configuration file loading')
+
+    load_config_file_jungfrau_test(jungfrau)
+    load_parameters_file_jungfrau_test(jungfrau)
+
+    print('Tested configuration file loading')
+

python/simple-integration-tests/jungfrau_0_6/tests/test_overtemperature.py

@@ -0,0 +1,68 @@
+
+import pytest
+import config_test
+import time
+from fixtures import jungfrau, jungfrautest
+
+def powerchip_test(jungfrau, control):
+    """
+
+    Test the main overtemperature protection control
+
+    """
+    #Set test initial conditions
+    print('\tStarting powerchip_test test case')
+
+    jungfrau.power_chip = False
+    jungfrau.temperature_control = control
+    assert jungfrau.power_chip == False
+    jungfrau.temperature_threshold = 35
+    jungfrau.power_chip = True
+
+
+    if jungfrau.temperature_control is True:
+        if jungfrau.temperature_event is True:
+            assert jungfrau.power_chip == False
+            jungfrau.power_chip = True
+            assert jungfrau.power_chip == False
+            jungfrau.temperature_control = False
+            assert jungfrau.power_chip == True
+            jungfrau.temperature_control = True
+            jungfrau.temperature_threshold = 50
+            assert jungfrau.power_chip == False
+
+            print('\t\tWaiting to cool down the board. This may take a while...')
+            while jungfrau.temperature_threshold < jungfrau.temp.fpga[0]:
+                time.sleep(5)
+                print('\t\tJungfrau MCB temperature: {0:.2f} °C'.format(jungfrau.temp.fpga[0]))
+
+            #Leave enough time to let the board cool down a bit more
+            time.sleep(30)
+            jungfrau.reset_temperature_event()
+
+            assert jungfrau.temperature_event == False
+            assert jungfrau.power_chip == True
+
+        else:
+            assert jungfrau.power_chip == True
+    else:
+        print('\t\tWaiting to warm up the board. This may take a while...')
+        while jungfrau.temperature_threshold > jungfrau.temp.fpga[0]:
+            time.sleep(5)
+            print('\t\tJungfrau MCB temperature: {0:.2f} °C'.format(jungfrau.temp.fpga[0]))
+
+        assert jungfrau.temperature_event == False
+        assert jungfrau.power_chip == True
+
+    print('\tFinished powerchip_test test case')
+
+
+#@jungfrautest
+def test_main(jungfrau):
+
+    print('\nTesting overtemperature protection control')
+
+    powerchip_test(jungfrau, False)
+    powerchip_test(jungfrau, True)
+
+    print('Tested overtemperature protection control')

python/sls_detector/__init__.py

@@ -0,0 +1,6 @@
+from .detector import Detector, DetectorError, free_shared_memory
+from .eiger import Eiger
+from .experimental import ExperimentalDetector
+from .jungfrau import Jungfrau
+from .jungfrau_ctb import JungfrauCTB
+from _sls_detector import DetectorApi

python/sls_detector/adcs.py

@@ -0,0 +1,40 @@
+from functools import partial
+class Adc:
+    def __init__(self, name, detector):
+        self.name = name
+        self._detector = detector
+        self.get_nmod = self._detector._api.getNumberOfDetectors
+        # Bind functions to get and set the dac
+        self.get = partial(self._detector._api.getAdc, self.name)
+
+
+    def __getitem__(self, key):
+        """
+        Get dacs either by slice, key or list
+        """
+        if key == slice(None, None, None):
+            return [self.get(i) / 1000 for i in range(self.get_nmod())]
+        elif isinstance(key, Iterable):
+            return [self.get(k) / 1000 for k in key]
+        else:
+            return self.get(key) / 1000
+
+    def __repr__(self):
+        """String representation for a single adc in all modules"""
+        degree_sign = u'\N{DEGREE SIGN}'
+        r_str = ['{:14s}: '.format(self.name)]
+        r_str += ['{:6.2f}{:s}C, '.format(self.get(i)/1000, degree_sign) for i in range(self.get_nmod())]
+        return ''.join(r_str).strip(', ')
+
+
+
+class DetectorAdcs:
+    """
+    Interface to the ADCs on the readout board
+    """
+    def __iter__(self):
+        for attr, value in self.__dict__.items():
+            yield value
+
+    def __repr__(self):
+        return '\n'.join([str(t) for t in self])

python/sls_detector/dacs.py

@@ -0,0 +1,125 @@
+from .detector_property import DetectorProperty
+from functools import partial
+import numpy as np
+
+class Dac(DetectorProperty):
+    """
+    This class represents a dac on the detector. One instance handles all
+    dacs with the same name for a multi detector instance.
+
+    .. note ::
+
+        This class is used to build up DetectorDacs and is in general
+        not directly accessed to the user.
+
+
+    """
+    def __init__(self, name, low, high, default, detector):
+
+        super().__init__(partial(detector._api.getDac, name),
+                         partial(detector._api.setDac, name),
+                         detector._api.getNumberOfDetectors,
+                         name)
+
+        self.min_value = low
+        self.max_value = high
+        self.default = default
+
+
+
+    def __repr__(self):
+        """String representation for a single dac in all modules"""
+        r_str = ['{:10s}: '.format(self.__name__)]
+        r_str += ['{:5d}, '.format(self.get(i)) for i in range(self.get_nmod())]
+        return ''.join(r_str).strip(', ')
+
+
+class DetectorDacs:
+    _dacs = [('vsvp',    0, 4000,    0),
+             ('vtr',     0, 4000, 2500),
+             ('vrf',     0, 4000, 3300),
+             ('vrs',     0, 4000, 1400),
+             ('vsvn',    0, 4000, 4000),
+             ('vtgstv',  0, 4000, 2556),
+             ('vcmp_ll', 0, 4000, 1500),
+             ('vcmp_lr', 0, 4000, 1500),
+             ('vcall',   0, 4000, 4000),
+             ('vcmp_rl', 0, 4000, 1500),
+             ('rxb_rb',  0, 4000, 1100),
+             ('rxb_lb',  0, 4000, 1100),
+             ('vcmp_rr', 0, 4000, 1500),
+             ('vcp',     0, 4000,  200),
+             ('vcn',     0, 4000, 2000),
+             ('vis',     0, 4000, 1550),
+             ('iodelay', 0, 4000,  660)]
+    _dacnames = [_d[0] for _d in _dacs]
+
+    def __init__(self, detector):
+        # We need to at least initially know which detector we are connected to
+        self._detector = detector
+
+        # Index to support iteration
+        self._current = 0
+
+        # Populate the dacs
+        for _d in self._dacs:
+            setattr(self, '_'+_d[0], Dac(*_d, detector))
+
+    def __getattr__(self, name):
+        return self.__getattribute__('_' + name)
+
+
+    def __setattr__(self, name, value):
+        if name in self._dacnames:
+            return self.__getattribute__('_' + name).__setitem__(slice(None, None, None), value)
+        else:
+            super().__setattr__(name, value)
+
+    def __next__(self):
+        if self._current >= len(self._dacs):
+            self._current = 0
+            raise StopIteration
+        else:
+            self._current += 1
+            return self.__getattr__(self._dacnames[self._current-1])
+
+    def __iter__(self):
+        return self
+
+    def __repr__(self):
+        r_str = ['========== DACS =========']
+        r_str += [repr(dac) for dac in self]
+        return '\n'.join(r_str)
+
+    def get_asarray(self):
+        """
+        Read the dacs into a numpy array with dimensions [ndacs, nmodules]
+        """
+        dac_array = np.zeros((len(self._dacs), self._detector.n_modules))
+        for i, _d in enumerate(self):
+            dac_array[i,:] = _d[:]
+        return dac_array
+
+    def set_from_array(self, dac_array):
+        """
+        Set the dacs from an numpy array with dac values. [ndacs, nmodules]
+        """
+        dac_array = dac_array.astype(np.int)
+        for i, _d in enumerate(self):
+            _d[:] = dac_array[i]
+
+    def set_default(self):
+        """
+        Set all dacs to their default values
+        """
+        for _d in self:
+            _d[:] = _d.default
+
+    def update_nmod(self):
+        """
+        Update the cached value of nmod, needs to be run after adding or
+        removing detectors
+        """
+        for _d in self:
+            _d._n_modules = self._detector.n_modules
+

python/sls_detector/decorators.py

@@ -0,0 +1,55 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Function decorators for the sls_detector.
+"""
+from .errors import DetectorError
+import functools
+
+
+def error_handling(func):
+    """
+    Check for errors registered by the slsDetectorSoftware
+    """
+    @functools.wraps(func)
+    def wrapper(self, *args, **kwargs):
+        
+        # remove any previous errors
+        self._api.clearErrorMask()
+        
+        # call function
+        result = func(self, *args, **kwargs)
+        
+        # check for new errors
+        m = self.error_mask
+        if m != 0:
+            msg = self.error_message
+            self._api.clearErrorMask()
+            raise DetectorError(msg)
+        return result
+
+    return wrapper
+
+
+def property_error_handling(func):
+    """
+    Check for errors registered by the slsDetectorSoftware
+    """
+
+    @functools.wraps(func)
+    def wrapper(self, *args, **kwargs):
+        # remove any previous errors
+        self._detector._api.clearErrorMask()
+
+        # call function
+        result = func(self, *args, **kwargs)
+
+        # check for new errors
+        m = self._detector.error_mask
+        if m != 0:
+            msg = self._detector.error_message
+            self._detector._api.clearErrorMask()
+            raise DetectorError(msg)
+        return result
+
+    return wrapper

python/sls_detector/detector_property.py

@@ -0,0 +1,51 @@
+from collections.abc import Iterable
+import numpy as np
+
+class DetectorProperty:
+    """
+    Base class for a detector property that should be accessed by name and index
+    TODO! Calls are not in parallel and exposes object that can be passes around
+    """
+    def __init__(self, get_func, set_func, nmod_func, name):
+        self.get = get_func
+        self.set = set_func
+        self.get_nmod = nmod_func
+        self.__name__ = name
+
+    def __getitem__(self, key):
+        if key == slice(None, None, None):
+            return [self.get(i) for i in range(self.get_nmod())]
+        elif isinstance(key, Iterable):
+            return [self.get(k) for k in key]
+        else:
+            return self.get(key)
+
+    def __setitem__(self, key, value):
+        #operate on all values
+        if key == slice(None, None, None):
+            if isinstance(value, (np.integer, int)):
+                for i in range(self.get_nmod()):
+                    self.set(i, value)
+            elif isinstance(value, Iterable):
+                for i in range(self.get_nmod()):
+                    self.set(i, value[i])
+            else:
+                raise ValueError('Value should be int or np.integer not', type(value))
+        
+        #Iterate over some
+        elif isinstance(key, Iterable):
+            if isinstance(value, Iterable):
+                for k,v in zip(key, value):
+                    self.set(k,v)
+
+            elif isinstance(value, int):
+                for k in key:
+                    self.set(k, value)
+
+        #Set single value
+        elif isinstance(key, int):
+            self.set(key, value)
+
+    def __repr__(self):
+        s = ', '.join(str(v) for v in self[:])
+        return '{}: [{}]'.format(self.__name__, s)

python/sls_detector/eiger.py

@@ -0,0 +1,618 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Created on Wed Dec  6 11:51:18 2017
+
+@author: l_frojdh
+"""
+
+import socket
+from collections.abc import Iterable
+from collections import namedtuple
+from functools import partial
+
+from .adcs import Adc, DetectorAdcs
+from .dacs import DetectorDacs
+from .decorators import error_handling
+from .detector import Detector
+from .detector_property import DetectorProperty
+from .utils import element_if_equal
+from sls_detector.errors import DetectorValueError, DetectorError
+
+class EigerVcmp:
+    """
+    Convenience class to be able to loop over vcmp for Eiger
+    
+    
+    .. todo::
+        
+        Support single assignment and perhaps unify with Dac class
+    
+    """
+    
+    def __init__(self, detector):
+        _names = ['vcmp_ll',
+                  'vcmp_lr',
+                  'vcmp_rl',
+                  'vcmp_rr']
+        self.set = []
+        self.get = []
+        for i in range(detector.n_modules):
+            if i % 2 == 0:
+                name = _names
+            else:
+                name = _names[::-1]
+            for n in name:
+                self.set.append(partial(detector._api.setDac, n, i))
+                self.get.append(partial(detector._api.getDac, n, i))
+    
+    def __getitem__(self, key):
+        if key == slice(None, None, None):
+            return [_d() for _d in self.get]
+        return self.get[key]()
+    
+    def __setitem__(self, i, value):
+        self.set[i](value)
+
+    def __repr__(self):
+        return 'vcmp: '+ str(self[:])
+
+
+class EigerDacs(DetectorDacs):
+    _dacs = [('vsvp',    0, 4000,    0),
+             ('vtr',     0, 4000, 2500),
+             ('vrf',     0, 4000, 3300),
+             ('vrs',     0, 4000, 1400),
+             ('vsvn',    0, 4000, 4000),
+             ('vtgstv',  0, 4000, 2556),
+             ('vcmp_ll', 0, 4000, 1500),
+             ('vcmp_lr', 0, 4000, 1500),
+             ('vcall',   0, 4000, 4000),
+             ('vcmp_rl', 0, 4000, 1500),
+             ('rxb_rb',  0, 4000, 1100),
+             ('rxb_lb',  0, 4000, 1100),
+             ('vcmp_rr', 0, 4000, 1500),
+             ('vcp',     0, 4000,  200),
+             ('vcn',     0, 4000, 2000),
+             ('vis',     0, 4000, 1550),
+             ('iodelay', 0, 4000,  660)]
+    _dacnames = [_d[0] for _d in _dacs]
+
+
+# noinspection PyProtectedMember
+class DetectorDelays:
+    _delaynames = ['frame', 'left', 'right']
+
+    def __init__(self, detector):
+        # We need to at least initially know which detector we are connected to
+        self._detector = detector
+        
+        setattr(self, '_frame', DetectorProperty(detector._api.getDelayFrame,
+                                                 detector._api.setDelayFrame,
+                                                 detector._api.getNumberOfDetectors,
+                                                 'frame'))
+
+        setattr(self, '_left', DetectorProperty(detector._api.getDelayLeft,
+                                                detector._api.setDelayLeft,
+                                                detector._api.getNumberOfDetectors,
+                                                'left'))
+
+        setattr(self, '_right', DetectorProperty(detector._api.getDelayRight,
+                                                 detector._api.setDelayRight,
+                                                 detector._api.getNumberOfDetectors,
+                                                 'right'))
+        # Index to support iteration
+        self._current = 0
+
+    def __getattr__(self, name):
+        return self.__getattribute__('_' + name)
+
+    def __setattr__(self, name, value):
+        if name in self._delaynames:
+            return self.__getattribute__('_' + name).__setitem__(slice(None, None, None), value)
+        else:
+            super().__setattr__(name, value)
+
+    def __next__(self):
+        if self._current >= len(self._delaynames):
+            self._current = 0
+            raise StopIteration
+        else:
+            self._current += 1
+            return self.__getattr__(self._delaynames[self._current-1])
+
+    def __iter__(self):
+        return self
+
+    def __repr__(self):
+        hn = self._detector.hostname
+        r_str = ['Transmission delay [ns]\n'
+                 '{:11s}{:>8s}{:>8s}{:>8s}'.format('', 'left', 'right', 'frame')]
+        for i in range(self._detector.n_modules):
+            r_str.append('{:2d}:{:8s}{:>8d}{:>8d}{:>8d}'.format(i, hn[i], self.left[i], self.right[i], self.frame[i]))
+        return '\n'.join(r_str)
+
+
+class Eiger(Detector):
+    """
+    Subclassing Detector to set up correct dacs and detector specific 
+    functions. 
+    """
+    _detector_dynamic_range = [4, 8, 16, 32]
+
+
+    _settings = ['standard', 'highgain', 'lowgain', 'veryhighgain', 'verylowgain']
+    """available settings for Eiger, note almost always standard"""
+
+    def __init__(self, id=0):
+        super().__init__(id)
+
+        self._active = DetectorProperty(self._api.getActive,
+                                        self._api.setActive,
+                                        self._api.getNumberOfDetectors,
+                                        'active')
+
+        self._vcmp = EigerVcmp(self)
+        self._dacs = EigerDacs(self)
+        self._trimbit_limits = namedtuple('trimbit_limits', ['min', 'max'])(0, 63)
+        self._delay = DetectorDelays(self)
+        
+        # Eiger specific adcs
+        self._temp = DetectorAdcs()
+        self._temp.fpga = Adc('temp_fpga', self)
+        self._temp.fpgaext = Adc('temp_fpgaext', self)
+        self._temp.t10ge = Adc('temp_10ge', self)
+        self._temp.dcdc = Adc('temp_dcdc', self)
+        self._temp.sodl = Adc('temp_sodl', self)
+        self._temp.sodr = Adc('temp_sodr', self)
+        self._temp.fpgafl = Adc('temp_fpgafl', self)
+        self._temp.fpgafr = Adc('temp_fpgafr', self)
+
+    @property
+    @error_handling
+    def active(self):
+        """
+        Is the detector active? Can be used to enable or disable a detector
+        module
+        
+        Examples
+        ----------
+        
+        ::
+            
+            d.active
+            >> active: [True, True]
+            
+            d.active[1] = False
+            >> active: [True, False]
+        """
+        return self._active
+    
+    @active.setter
+    @error_handling
+    def active(self, value):
+        self._active[:] = value
+    
+    @property
+    def measured_period(self):
+        return self._api.getMeasuredPeriod()
+
+    @property
+    def measured_subperiod(self):
+        return self._api.getMeasuredSubPeriod()
+
+    @property
+    @error_handling
+    def add_gappixels(self):
+       """Enable or disable the (virual) pixels between ASICs
+
+       Examples
+       ----------
+
+       ::
+
+           d.add_gappixels = True
+
+           d.add_gappixels
+           >> True
+
+       """
+       return self._api.getGapPixels()
+
+    @add_gappixels.setter
+    @error_handling
+    def add_gappixels(self, value):
+       self._api.setGapPixels(value)
+
+    @property
+    def dacs(self):
+        """
+
+        An instance of DetectorDacs used for accessing the dacs of a single
+        or multi detector.
+
+        Examples
+        ---------
+
+        ::
+
+            d = Eiger()
+
+            #Set all vrf to 1500
+            d.dacs.vrf = 1500
+
+            #Check vrf
+            d.dacs.vrf
+            >> vrf       :  1500,  1500
+
+            #Set a single vtr
+            d.dacs.vtr[0] = 1800
+
+            #Set vrf with multiple values
+            d.dacs.vrf = [3500,3700]
+            d.dacs.vrf
+            >> vrf       :  3500,  3700
+
+            #read into a variable
+            var = d.dacs.vrf[:]
+
+            #set multiple with multiple values, mostly used for large systems
+            d.dacs.vcall[0,1] = [3500,3600]
+            d.dacs.vcall
+            >> vcall     :  3500,  3600
+
+            d.dacs
+            >>
+            ========== DACS =========
+            vsvp      :     0,     0
+            vtr       :  4000,  4000
+            vrf       :  1900,  1900
+            vrs       :  1400,  1400
+            vsvn      :  4000,  4000
+            vtgstv    :  2556,  2556
+            vcmp_ll   :  1500,  1500
+            vcmp_lr   :  1500,  1500
+            vcall     :  4000,  4000
+            vcmp_rl   :  1500,  1500
+            rxb_rb    :  1100,  1100
+            rxb_lb    :  1100,  1100
+            vcmp_rr   :  1500,  1500
+            vcp       :  1500,  1500
+            vcn       :  2000,  2000
+            vis       :  1550,  1550
+            iodelay   :   660,   660
+
+        """
+        return self._dacs
+
+    @property
+    @error_handling
+    def tx_delay(self):
+        """
+        Transmission delay of the modules to allow running the detector
+        in a network not supporting the full speed of the detector.
+
+
+        ::
+            
+            d.tx_delay
+            >>
+            Transmission delay [ns]
+                           left   right   frame
+             0:beb048         0   15000       0
+             1:beb049       100  190000     100
+             
+             d.tx_delay.left = [2000,5000]
+        """
+        return self._delay
+
+    def default_settings(self):
+        """
+        reset the detector to some type of standard settings
+        mostly used when testing
+        """
+        self.n_frames = 1
+        self.exposure_time = 1
+        self.period = 0
+        self.n_cycles = 1
+        self.n_measurements = 1
+        self.dynamic_range = 16
+
+    @property
+    @error_handling
+    def eiger_matrix_reset(self):
+        """
+        Matrix reset bit for Eiger.
+
+        :py:obj:`True` : Normal operation, the matrix is reset before each acq.
+        :py:obj:`False` : Matrix reset disabled. Used to not reset before
+        reading out analog test pulses.
+        """
+        return self._api.getCounterBit()
+
+    @eiger_matrix_reset.setter
+    @error_handling
+    def eiger_matrix_reset(self, value):
+        self._api.setCounterBit(value)
+
+    @property
+    @error_handling
+    def flowcontrol_10g(self):
+        """
+        :py:obj:`True` - Flow control enabled :py:obj:`False` flow control disabled.
+        Sets for all moduels, if for some reason access to a single module is needed
+        this can be done trough the C++ API.
+
+        """
+        fc = self._api.getNetworkParameter('flow_control_10g')
+        return element_if_equal([bool(int(e)) for e in fc])
+
+    @flowcontrol_10g.setter
+    @error_handling
+    def flowcontrol_10g(self, value):
+        if value is True:
+            v = '1'
+        else:
+            v = '0'
+        self._api.setNetworkParameter('flow_control_10g', v, -1)
+
+    @error_handling
+    def pulse_all_pixels(self, n):
+        """
+        Pulse each pixel of the chip **n** times using the analog test pulses.
+        The pulse height is set using d.dacs.vcall with 4000 being 0 and 0 being
+        the highest pulse.
+        
+        ::
+            
+            #Pulse all pixels ten times
+            d.pulse_all_pixels(10)
+            
+            #Avoid resetting before acq
+            d.eiger_matrix_reset = False
+            
+            d.acq() #take frame
+            
+            #Restore normal behaviour
+            d.eiger_matrix_reset = True
+        
+        
+        """
+        self._api.pulseAllPixels(n)
+        
+    @error_handling
+    def pulse_diagonal(self, n):
+        """
+        Pulse pixels in super colums in a diagonal fashion. Used for calibration
+        of vcall. Saves time compared to pulsing all pixels.
+        """
+        self._api.pulseDiagonal(n)
+
+    @error_handling
+    def pulse_chip(self, n):
+        """
+        Advance the counter by toggling enable. Gives 2*n+2 int the counter
+        
+        """
+        n = int(n)
+        if n >= -1:
+            self._api.pulseChip(n)
+        else:
+            raise ValueError('n must be equal or larger than -1')
+
+    @property
+    def vcmp(self):
+        """
+        Convenience function to get and set the individual vcmp of chips
+        Used mainly in the calibration code.
+
+        Examples
+        ---------
+
+        ::
+
+            #Reading
+            d.vcmp[:]
+            >> [500, 500, 500, 500, 500, 500, 500, 500]
+
+            #Setting
+            d.vcmp = [500, 500, 500, 500, 500, 500, 500, 500]
+
+
+        """
+
+        return self._vcmp
+    
+    @vcmp.setter
+    @error_handling
+    def vcmp(self, values):
+        if len(values) == len(self._vcmp.set):
+            for i, v in enumerate(values):
+                self._vcmp.set[i](v)
+        else:
+            raise ValueError('vcmp only compatible with setting all')
+
+    @property
+    @error_handling
+    def rx_udpport(self):
+        """
+        UDP port for the receiver. Each module has two ports referred to
+        as rx_udpport and rx_udpport2 in the command line interface
+        here they are grouped for each detector
+        
+        ::
+            
+            [0:rx_udpport, 0:rx_udpport2, 1:rx_udpport ...]
+        
+        Examples
+        -----------
+        
+        ::
+        
+            d.rx_udpport
+            >> [50010, 50011, 50004, 50005]
+            
+            d.rx_udpport = [50010, 50011, 50012, 50013]
+        
+        """
+        p0 = self._api.getReceiverUDPPort()
+        p1 = self._api.getReceiverUDPPort2()
+        return [int(val) for pair in zip(p0, p1) for val in pair]
+    
+    @rx_udpport.setter
+    @error_handling
+    def rx_udpport(self, ports):
+        """Requires iterating over elements two and two for setting ports"""
+        a = iter(ports)
+        for i, p in enumerate(zip(a, a)):
+            self._api.setReceiverUDPPort(p[0], i)
+            self._api.setReceiverUDPPort2(p[1], i)
+
+    @property
+    @error_handling
+    def rx_zmqport(self):
+        """
+        Return the receiver zmq ports. Note that Eiger has two ports per receiver!
+
+        ::
+
+            detector.rx_zmqport
+            >> [30001, 30002, 30003, 30004]
+
+
+        """
+        _s = self._api.getReceiverStreamingPort()
+        if _s == '':
+            return []
+        else:
+            return [int(_p) + i for _p in _s for i in range(2)]
+
+    @rx_zmqport.setter
+    @error_handling
+    def rx_zmqport(self, port):
+        if isinstance(port, Iterable):
+            for i, p in enumerate(port):
+                self._api.setReceiverStreamingPort(p, i)
+        else:
+            self._api.setReceiverStreamingPort(port, -1)
+
+
+    @property
+    @error_handling
+    def sub_exposure_time(self):
+        """
+        Sub frame exposure time in *seconds* for Eiger in 32bit autosumming mode
+
+        ::
+
+            d.sub_exposure_time
+            >> 0.0023
+
+            d.sub_exposure_time = 0.002
+
+        """
+        return self._api.getSubExposureTime() / 1e9
+
+    
+    @sub_exposure_time.setter
+    @error_handling
+    def sub_exposure_time(self, t):
+        #TODO! checking here or in the detector?
+        ns_time = int(t * 1e9)
+        if ns_time > 0:
+            self._api.setSubExposureTime(ns_time)
+        else:
+            raise DetectorValueError('Sub exposure time must be larger than 0')
+
+    @property
+    @error_handling
+    def sub_deadtime(self):
+        """
+        Deadtime between subexposures. Used to mimize noise by delaying the start of the next
+        subexposure.
+        """
+        return self._api.getSubExposureDeadTime() / 1e9
+
+    
+    @sub_deadtime.setter
+    @error_handling
+    def sub_deadtime(self, t):
+        ns_time = int(t * 1e9)
+        if ns_time >= 0:
+            self._api.setSubExposureDeadTime(ns_time)
+        else:
+            raise ValueError('Sub deadtime time must be larger or equal to 0')
+
+    @property
+    def temp(self):
+        """
+        An instance of DetectorAdcs used to read the temperature
+        of different components
+
+        Examples
+        -----------
+
+        ::
+
+            detector.temp
+            >>
+            temp_fpga     :  36.90°C,  45.60°C
+            temp_fpgaext  :  31.50°C,  32.50°C
+            temp_10ge     :   0.00°C,   0.00°C
+            temp_dcdc     :  36.00°C,  36.00°C
+            temp_sodl     :  33.00°C,  34.50°C
+            temp_sodr     :  33.50°C,  34.00°C
+            temp_fpgafl   :  33.81°C,  30.93°C
+            temp_fpgafr   :  27.88°C,  29.15°C
+
+            a = detector.temp.fpga[:]
+            a
+            >> [36.568, 45.542]
+
+
+        """
+        return self._temp
+
+    @property
+    @error_handling
+    def tengiga(self):
+        """Enable 10Gbit/s data output
+        
+        Examples
+        ----------
+        
+        ::
+            
+            d.tengiga
+            >> False
+            
+            d.tengiga = True
+            
+        """
+        return self._api.getTenGigabitEthernet()
+    
+    @tengiga.setter
+    @error_handling
+    def tengiga(self, value):
+        self._api.setTenGigabitEthernet(value)
+
+    def set_delays(self, delta):
+        self.tx_delay.left = [delta*(i*2) for i in range(self.n_modules)]
+        self.tx_delay.right = [delta*(i*2+1) for i in range(self.n_modules)]
+
+
+    def setup500k(self, hostnames):
+        """
+        Setup the Eiger detector to run on the local machine
+        """
+        
+        self.hostname = hostnames
+        self.file_write = False
+        self.image_size = (512, 1024)
+        self.rx_tcpport = [1954, 1955]
+        self.rx_udpport = [50010, 50011, 50004, 50005]
+        self.rx_hostname = socket.gethostname().split('.')[0]
+        self.rx_datastream = False
+        self.file_write = False
+        self.online = True
+        self.receiver_online = True