addings 9.0.0 releae notes

Pull request from Samuel ESRF

.gitignore

@@ -1,10 +1,8 @@
 .cproject
 .project
-bin/
 .settings
 *.aux
 *.log
 *.out
 *.toc
-build
-docs/
+

CMakeLists.txt

@@ -1,32 +0,0 @@
-cmake_minimum_required(VERSION 2.8)
-set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake")
-set (REST OFF)
-set (CALIBRATE OFF)
-option (USE_HDF5 "HDF5 File format" OFF)
-
-
-find_package(Qt4)
-find_package(Qwt 6)
-find_package(CBF)
-find_package(Doxygen)
-if (USE_HDF5)
-	find_package(HDF5 1.10 COMPONENTS CXX)
-endif (USE_HDF5)
-
-set(CMAKE_POSITION_INDEPENDENT_CODE ON)
-
-add_subdirectory(slsDetectorSoftware)
-add_subdirectory(slsReceiverSoftware)
-if (QT4_FOUND AND QWT_FOUND)
-    add_subdirectory(slsDetectorGui)
-endif()
-
-
-if (CALIBRATE)
-    if (DEFINED ENV{ROOTSYS})
-        find_package(ROOT)
-        if (ROOT_FOUND)
-            add_subdirectory(calibrationWizards)
-        endif()
-    endif()
-endif(CALIBRATE)

Makefile

@@ -1,233 +0,0 @@
-# do not change below this line#
-
-# Include common definitions
-include Makefile.include
-
-INSTALLROOT	?=	$(PWD)
-BINDIR	?=	$(INSTALLROOT)/bin
-DOCDIR	?=	$(INSTALLROOT)/manual/docs
-LIBDIR	?=	$(INSTALLROOT)/bin
-INCDIR	?=	$(INSTALLROOT)/include
-DETAILDOC	?=	$(INSTALLROOT)/docs
- 
-WD				=	$(shell pwd)
-LIBRARYDIR		=	$(WD)/slsDetectorSoftware
-LIBRARYRXRDIR 		= 	$(WD)/slsReceiverSoftware
-CLIENTDIR		=	$(LIBRARYDIR)/slsDetectorClient
-GUIDIR			=	$(WD)/slsDetectorGui
-RECEIVERDIR		=	$(LIBRARYRXRDIR)
-CALWIZDIR		=	$(WD)/calibrationWizards
-MANDIR			=	$(WD)/manual
-CALIBDIR		=	$(WD)/slsDetectorCalibration
-
-TABSPACE		:=	"\t"
-
- 
-INCLUDES=-I. -I$(LIBRARYDIR)/commonFiles -I$(LIBRARYDIR)/slsDetector -I$(LIBRARYDIR)/usersFunctions -I$(LIBRARYDIR)/multiSlsDetector -I$(LIBRARYDIR)/slsDetectorUtils -I$(LIBRARYDIR)/slsDetectorCommand -I$(LIBRARYDIR)/slsDetectorAnalysis -I$(LIBRARYDIR)/slsReceiverInterface  -I$(LIBRARYRXRDIR)/include -I$(LIBRARYDIR)/threadFiles -I$(ASM)
-
-INCLUDESRXR += -I. -I$(LIBRARYRXRDIR)/include -I$(CALIBDIR) -I$(ASM) 
-#LIBFLAGRXR += 
-
-$(info )
-$(info #######################################)
-$(info #   In slsDetectorsPackage Makefile   #)
-$(info #######################################)
-$(info )
-
-
-.PHONY: all nonstatic static lib libreceiver textclient receiver gui stextclient sreceiver
-
-#all: lib textclient  receiver gui 
-all: textclient  receiver gui 
-
-nonstatic: lib libreceiver textclient receiver  gui 
-
-static: lib  libreceiver stextclient sreceiver gui 
-
-
-lib:
-	cd $(LIBRARYDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(LIBDIR)' LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
-
-libreceiver:
-	cd $(LIBRARYRXRDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(LIBDIR)' LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
-
-
-stextclient: slsDetectorClient_static
-
-slsDetectorClient: textclient
-
-slsDetectorClient_static: #lib
-	cd  $(CLIENTDIR) && $(MAKE) static_clients FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)' LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
-	@echo ""
-	@echo "#######################################"
-	@echo "# Back in slsDetectorPackage Makefile #"
-	@echo "#######################################"
-	@echo ""
-		
-textclient: #lib
-	cd  $(CLIENTDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBRARYDIR='$(LIBRARYDIR)' LIBS='$(LDFLAGDET)' INCLUDES='$(INCLUDES)' LIBDIR='$(LIBDIR)'
-	@echo ""
-	@echo "#######################################"
-	@echo "# Back in slsDetectorPackage Makefile #"
-	@echo "#######################################"
-	@echo ""
-	
-slsReceiver: receiver
-
-slsReceiver_static: receiver
-
-receiver: #libreceiver
-#	cd  $(RECEIVERDIR) && $(MAKE) receiver FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
-	cd  $(RECEIVERDIR) && $(MAKE) FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
-	@echo ""
-	@echo "#######################################"
-	@echo "# Back in slsDetectorPackage Makefile #"
-	@echo "#######################################"
-	@echo ""
-		
-sreceiver: #libreceiver
-	cd  $(RECEIVERDIR) && $(MAKE)  static_receiver FLAGS='$(FLAGS)' DESTDIR='$(BINDIR)'  LIBS='$(LDFLAGRXR)' INCLUDES='$(INCLUDESRXR)' LIBDIR='$(LIBDIR)'
-	@echo ""
-	@echo "#######################################"
-	@echo "# Back in slsDetectorPackage Makefile #"
-	@echo "#######################################"
-	@echo ""
-
-slsDetectorGUI: #lib
-	cd  $(GUIDIR) && $(MAKE) DESTDIR='$(BINDIR)' LIBRARYDIR='$(LIBRARYDIR)' INCLUDES='$(INCLUDES)' LDFLAGDET='$(LDFLAGDETONLY)' LIBDIR='$(LIBDIR)'
-	@echo ""
-	@echo "#######################################"
-	@echo "# Back in slsDetectorPackage Makefile #"
-	@echo "#######################################"
-	@echo ""
-	
-calWiz: 
-	cd  $(CALWIZDIR) && $(MAKE)  DESTDIR=$(BINDIR) #FLAGS=$(FLAGS)  LDFLAGDET=$(LDFLAGDET) INCLUDES=$(INCLUDES)
-
-
-
-gui: slsDetectorGUI
-
-
-doc:
-	$(shell test -d $(DOCDIR) || mkdir -p $(DOCDIR))
-	cd manual && make all DESTDIR=$(DOCDIR)
-
-htmldoc:
-	make doc
-	$(shell test -d $(DOCDIR) || mkdir -p $(DOCDIR))
-	cd manual && make html DESTDIR=$(DOCDIR)
-	
-detaildoc: createdocs docspdf docshtml removedocs
-
-createdocs: $(LIBRARYDIR)/doxy.config
-	doxygen $(LIBRARYDIR)/doxy.config	
-
-docspdf: 
-	cd slsDetectorPackageDocs/latex && make 
-	$(shell test -d $(DETAILDOC) || mkdir -p $(DETAILDOC))
-	$(shell test -d $(DETAILDOC)/pdf || mkdir -p $(DETAILDOC)/pdf)
-	mv slsDetectorPackageDocs/latex/refman.pdf $(DETAILDOC)/pdf/slsDetectorPackageDocs.pdf
-
-docshtml: 
-	$(shell test -d $(DETAILDOC) || mkdir -p $(DETAILDOC))
-	$(shell test -d $(DETAILDOC)/html || mkdir -p $(DETAILDOC)/html)
-	$(shell test -d $(DETAILDOC)/html/slsDetectorPackageDocs && rm -r $(DETAILDOC)/html/slsDetectorPackageDocs)
-	mv slsDetectorPackageDocs/html $(DETAILDOC)/html/slsDetectorPackageDocs
-	
-removedocs:
-	rm -rf 	slsDetectorPackageDocs;
-
-
-clean:
-	cd $(BINDIR) && rm -rf sls_detector_* slsDetectorGui slsReceiver angularCalibrationWizard energyCalibrationWizard 
-	cd $(LIBDIR) && rm -rf libSlsDetector.so libSlsDetector.a libSlsReceiver.so libSlsReceiver.a 
-	cd $(LIBRARYDIR) && $(MAKE) clean 
-	cd $(LIBRARYRXRDIR) && $(MAKE) clean 
-	cd $(CLIENTDIR) && $(MAKE) clean
-	cd $(GUIDIR) && $(MAKE) clean
-	cd $(CALWIZDIR) && $(MAKE) clean
-	cd manual && $(MAKE) clean
-	cd $(DOCDIR) && rm -rf * 
-	rm -rf 	slsDetectorPackageDocs;
-	rm -rf $(DETAILDOC)
-
-
-#install_lib: 
-#	cd $(LIBRARYDIR) && $(MAKE) install DESTDIR=$(LIBDIR) INCLUDES=$(INCLUDES)
-#	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR)
-
-mythen_virtual:
-	cd $(LIBRARYDIR) && $(MAKE) mythenVirtualServer DESTDIR=$(BINDIR)
-
-
-gotthard_virtual:
-	cd $(LIBRARYDIR) && $(MAKE) gotthardVirtualServer DESTDIR=$(BINDIR)
-
-
-install_client: textclient slsReceiver
-
-install_gui: gui
-
-confinstall:
-	make conf;\
-	make install
-
-install_lib: 
-	make lib;\
-	make libreceiver; \
-	make textclient; \
-	make slsReceiver; \
-	make doc; \
-	make htmldoc; \
-	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR); \
-	cd $(LIBRARYRXRDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);
-
-install: 
-	make install_lib; \
-	make gui; \
-	make calWiz; \
-	cd $(LIBRARYDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);\
-	cd $(LIBRARYRXRDIR) && $(MAKE) install_inc DESTDIR=$(INCDIR);
-
-conf:
-	set -e; \
-	. ./configure; \
-	@echo "INSTALLROOT is $(INSTALLROOT)"
-	@echo "BINDIR is $(BINDIR)"
-	@echo "LIBDIR is $(LIBDIR)"
-	@echo "INCDIR is $(INCDIR)"
-	@echo "DOCDIR is $(DOCDIR)"
-
-
-help:
-	@echo "Targets:"
-	@echo "make all 		compile library,  text clients, data reciever"
-	@echo "make lib 		compile library"
-	@echo "make libreceiver 		compile receiver library"
-	@echo "make textclient		compile the slsDetectorClient dynamically linking the libraries"
-	@echo "make stextclient 		compile slsDetectorClient statically linking the libraries"
-	@echo "make receiver		compile the slsReciever dynamically linking the libraries"
-	@echo "make sreceiver		compile the slsReciever statically linking the libraries"
-	@echo "make gui			compile slsDetectorGUI - requires a working Qt4 and Qwt installation"
-	@echo "make calWiz 		compile the calibration wizards - requires a working Root installation"
-	@echo "make doc			compile pdf documentation"
-	@echo "make htmldoc		compile html (and pdf) documentation"
-	@echo "make install_lib         installs the libraries, the text clients, the documentation and the includes for the API"
-	@echo "make install             installs all software, including the gui, the cal wizards and the includes for the API"
-	@echo "make confinstall         installs all software, including the gui, the cal wizards and the includes for the API, prompting for the install paths"
-	@echo "make clean              	remove object files and executables"
-	@echo "make help               	lists possible targets"
-	@echo ""
-	@echo ""
-	@echo "Makefile variables"
-	@echo "REST=yes		 compile REST-aware Receiver (POCO and JsonBox libraries required)"
-	@echo "DEBUG=1,2		 set debug level to 1 (VERBOSE) or 2 (VERYVERBOSE)"
-	@echo ""
-	@echo ""
-	@echo "Variables -  to change them run <source configure> :"
-	@echo "INSTALLROOT=<yourdir>:    installation root di	r, default $PWD"
-	@echo "BINDIR=<yourbin>:         binary installation dir below INSTALLROOT, default bin"
-	@echo "LIBDIR=<yourlib>:         library installation dir below INSTALLROOT, default lib"
-	@echo "INCDIR=<yourincludes>:    header installation dir below INSTALLROOT, default include"
-	@echo "DOCDIR=<yourdoc>:         documentation installation dir below INSTALLROOT, default doc"

Makefile.include

@@ -1,78 +0,0 @@
-##############################################################
-# Generic 
-##############################################################
-
-CC = g++
-CXX = $(CC)
-ASM=$(shell echo "/lib/modules/`uname -r`/build/include")
-LDFLAGDETONLY = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsDetector 
-LDFLAGDET = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsDetector -L/usr/lib64/ -pthread
-LDFLAGRXR = -L$(LIBDIR)  -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L/usr/lib64/ -pthread
-FLAGS= -Wall  -pthread  #-DEIGER_DEBUG2
-# -DVERBOSE 
-
-# Setting up the verbose flags
-ifeq ($(DEBUG),1)
-     FLAGS = -Wall -DVERBOSE
-endif
-ifeq ($(DEBUG),2)
-     FLAGS = -Wall -DVERYVERBOSE
-endif
-
-##############################################################
-# HDF5 specific. Set this to yes, if you want to compile
-# HDF5 code: in this case, you need HDF5 libraries
-##############################################################   
-
-HDF5 = no
-HDF5_DIR = /opt/hdf5v1.10.0
-
-ifeq ($(HDF5),yes)
-	LDFLAGRXR = -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsReceiver -L$(HDF5_DIR)/lib  -Wl,-rpath=$(HDF5_DIR)/lib -lhdf5 -lhdf5_cpp -lsz -lz -DHDF5C -L/usr/lib64/ -pthread
-	INCLUDESRXR = -I$(HDF5_DIR)/include
-endif	
-
-
-##############################################################
-# EigerSLS specific. Set this to yes, if you want to compile
-# EigerSLS code: in this case, you need also POCO and JsonBox 
-# libraries
-##############################################################   
-
-REST = no
-
-
-POCODIR = /afs/psi.ch/user/s/sala/public/poco
-JSONBOXDIR = /opt/JsonBox-0.5
-
-RESTFLAGS = -L$(POCODIR)/lib -Wl,-rpath=$(POCODIR)/lib  -L$(JSONBOXDIR) -Wl,-rpath=$(JSONBOXDIR)  -lPocoNet -lPocoFoundation -lJsonBox
-
-ifeq ($(REST),yes)
-     LDFLAGRXR = -L$(LIBDIR) -Wl,-rpath=$(LIBDIR) -lSlsReceiver $(RESTFLAGS) -DREST
-     INCLUDESRXR = $(EIGERFLAGS) -I$(POCODIR)/include -I$(JSONBOXDIR)/include
-endif
-
-
-##############################################################
-# ROOTSLS specific. Set this to yes, if you want to compile
-# ROOTSLS code: in this case, you need also root libraries
-##############################################################   
-
-ROOTSLS = no
-
-ROOTFLAGS = $(shell root-config --cflags --glibs) -DMYROOT1   #-DALLFILE_DEBUG #-DMYROOT1 
-
-ifeq ($(ROOTSLS),yes)
-     LDFLAGRXR = -L$(LIBDIR) -lSlsReceiver $(ROOTFLAGS) -DROOTSLS
-endif
-
-
-define colorecho
-      @tput setaf 6
-      @echo $1
-      @tput sgr0
-endef
-
-
-
-

README.md

@@ -1,48 +0,0 @@
-# slsDetector package
-
-
-## Installation
-
-### Get source
-The source code is organised into several submodules, and the top level module is
-sls_detectors_package.
-
-```
-    $ git clone git@git.psi.ch:sls_detectors_software/sls_detectors_package.git
-    $ cd sls_detectors_package
-    $ ./checkout.sh
-```
-
-### Setup dependencies
-The GUI client requires Qt 4.8 and Qwt 6.0
-```
-    export QTDIR=/usr/local/Trolltech/
-    export QWTDIR=/usr/local/qwt-6.0.1/
-```
-If either of them does not exist, the GUI client will not be built.
-
-The calibration wizards require ROOT
-```
-    export ROOTSYS=/usr/local/root-5.34
-```
-
-### Compile
-Use cmake to create out-of-source builds, by creating an build folder parallel to source directory.
-```
-    $ cd ..
-    $ mkdir sls_detectors_package-build
-    $ cd sls_detectors_package-build
-    $ cmake ../sls_detectors_package
-    $ make
-```
-
-Use the following as an example to compile statically and using specific hdf5 folder
-```
-    $ HDF5_ROOT=/opt/hdf5v1.10.0 cmake -DHDF5_USE_STATIC_LIBRARIES=TRUE ../slsDetectorsPackage
- ```  
-The libraries and executables will be found at `bin` directory
-```
-    $ ls bin/
-    gui_client  libSlsDetector.a  libSlsDetector.so  libSlsReceiver.a  libSlsReceiver.so
-    sls_detector_acquire  sls_detector_get  slsDetectorGui  sls_detector_help  sls_detector_put  slsReceiver
-```

checkout.sh

@@ -1,17 +0,0 @@
-#git clone $1@git.psi.ch:sls_det_software/sls_detectors_package.git slsDetectorsPackage
-
-#cd slsDetectorsPackage
-
-git clone $1@git.psi.ch:sls_detectors_software/sls_detector_software.git slsDetectorSoftware
-
-git clone $1@git.psi.ch:sls_detectors_software/sls_detector_gui.git slsDetectorGui
-
-git clone $1@git.psi.ch:sls_detectors_software/sls_receiver_software.git slsReceiverSoftware
-
-git clone $1@git.psi.ch:sls_detectors_software/sls_detector_calibration.git slsDetectorCalibration
-
-#git clone $1@git.psi.ch:sls_detectors_software/sls_image_reconstruction.git slsImageReconstruction
-
-git clone $1@git.psi.ch:sls_detectors_software/calibration_wizards.git calibrationWizards
-
-#git clone git@git.psi.ch:sls_detectors_software/tests.git tests

cleansharedmemory.sh

@@ -1 +0,0 @@
-for i in seq `ipcs -m | cut -d ' ' -f1`; do ipcrm -M $i; done;

cmake/FindCBF.cmake

@@ -1,11 +0,0 @@
-FIND_PATH (CBF_INCLUDE_DIR
-    ${CBF_DIR}/include
-    ${CBF_DIR}/include/cbflib
-)
-FIND_LIBRARY (CBF_LIBRARY
-    NAMES cbf
-    HINTS ${CBF_DIR}/lib
-)
-INCLUDE ( FindPackageHandleStandardArgs )
-FIND_PACKAGE_HANDLE_STANDARD_ARGS (CBF DEFAULT_MSG CBF_LIBRARY CBF_INCLUDE_DIR )
-

cmake/FindQwt.cmake

@@ -1,118 +0,0 @@
-# Qt Widgets for Technical Applications
-# available at http://www.http://qwt.sourceforge.net/
-#
-# The module defines the following variables:
-#  QWT_FOUND - the system has Qwt
-#  QWT_INCLUDE_DIR - where to find qwt_plot.h
-#  QWT_INCLUDE_DIRS - qwt includes
-#  QWT_LIBRARY - where to find the Qwt library
-#  QWT_LIBRARIES - aditional libraries
-#  QWT_MAJOR_VERSION - major version
-#  QWT_MINOR_VERSION - minor version
-#  QWT_PATCH_VERSION - patch version
-#  QWT_VERSION_STRING - version (ex. 5.2.1)
-#  QWT_ROOT_DIR - root dir (ex. /usr/local)
-
-#=============================================================================
-# Copyright 2010-2013, Julien Schueller
-# All rights reserved.
-# 
-# Redistribution and use in source and binary forms, with or without
-# modification, are permitted provided that the following conditions are met: 
-# 
-# 1. Redistributions of source code must retain the above copyright notice, this
-#    list of conditions and the following disclaimer. 
-# 2. Redistributions in binary form must reproduce the above copyright notice,
-#    this list of conditions and the following disclaimer in the documentation
-#    and/or other materials provided with the distribution. 
-#
-# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
-# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
-# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
-# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
-# ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
-# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
-# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
-# ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
-# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
-# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
-
-# The views and conclusions contained in the software and documentation are those
-# of the authors and should not be interpreted as representing official policies, 
-# either expressed or implied, of the FreeBSD Project.
-#=============================================================================
-
-
-find_path ( QWT_INCLUDE_DIR
-  NAMES qwt_plot.h
-  HINTS $ENV{QWTDIR} $ENV{QWTDIR}/src ${QT_INCLUDE_DIR}
-  PATH_SUFFIXES qwt qwt-qt3 qwt-qt4 qwt-qt5
-)
-
-set ( QWT_INCLUDE_DIRS ${QWT_INCLUDE_DIR} )
-
-# version
-set ( _VERSION_FILE ${QWT_INCLUDE_DIR}/qwt_global.h )
-if ( EXISTS ${_VERSION_FILE} )
-  file ( STRINGS ${_VERSION_FILE} _VERSION_LINE REGEX "define[ ]+QWT_VERSION_STR" )
-  if ( _VERSION_LINE )
-    string ( REGEX REPLACE ".*define[ ]+QWT_VERSION_STR[ ]+\"(.*)\".*" "\\1" QWT_VERSION_STRING "${_VERSION_LINE}" )
-    string ( REGEX REPLACE "([0-9]+)\\.([0-9]+)\\.([0-9]+)" "\\1" QWT_MAJOR_VERSION "${QWT_VERSION_STRING}" )
-    string ( REGEX REPLACE "([0-9]+)\\.([0-9]+)\\.([0-9]+)" "\\2" QWT_MINOR_VERSION "${QWT_VERSION_STRING}" )
-    string ( REGEX REPLACE "([0-9]+)\\.([0-9]+)\\.([0-9]+)" "\\3" QWT_PATCH_VERSION "${QWT_VERSION_STRING}" )
-  endif ()
-endif ()
-
-
-# check version
-set ( _QWT_VERSION_MATCH TRUE )
-if ( Qwt_FIND_VERSION AND QWT_VERSION_STRING )
-  if ( Qwt_FIND_VERSION_EXACT )
-    if ( NOT Qwt_FIND_VERSION VERSION_EQUAL QWT_VERSION_STRING )
-      set ( _QWT_VERSION_MATCH FALSE )
-    endif ()
-  else ()
-    if ( QWT_VERSION_STRING VERSION_LESS Qwt_FIND_VERSION )
-      set ( _QWT_VERSION_MATCH FALSE )
-    endif ()
-  endif ()
-endif ()
-
-
-find_library ( QWT_LIBRARY
-  NAMES qwt qwt-qt3 qwt-qt4 qwt-qt5
-  HINTS $ENV{QWTDIR}/lib ${QT_LIBRARY_DIR}
-)
-
-set ( QWT_LIBRARIES ${QWT_LIBRARY} )
-
-
-# try to guess root dir from include dir
-if ( QWT_INCLUDE_DIR )
-  string ( REGEX REPLACE "(.*)/include.*" "\\1" QWT_ROOT_DIR ${QWT_INCLUDE_DIR} )
-# try to guess root dir from library dir
-elseif ( QWT_LIBRARY )
-  string ( REGEX REPLACE "(.*)/lib[/|32|64].*" "\\1" QWT_ROOT_DIR ${QWT_LIBRARY} )
-endif ()
-
-
-# handle the QUIETLY and REQUIRED arguments
-include ( FindPackageHandleStandardArgs )
-if ( CMAKE_VERSION LESS 2.8.3 )
-  find_package_handle_standard_args( Qwt DEFAULT_MSG QWT_LIBRARY QWT_INCLUDE_DIR _QWT_VERSION_MATCH )
-else ()
-  find_package_handle_standard_args( Qwt REQUIRED_VARS QWT_LIBRARY QWT_INCLUDE_DIR _QWT_VERSION_MATCH VERSION_VAR QWT_VERSION_STRING )
-endif ()
-
-
-mark_as_advanced (
-  QWT_LIBRARY 
-  QWT_LIBRARIES
-  QWT_INCLUDE_DIR
-  QWT_INCLUDE_DIRS
-  QWT_MAJOR_VERSION
-  QWT_MINOR_VERSION
-  QWT_PATCH_VERSION
-  QWT_VERSION_STRING
-  QWT_ROOT_DIR
-)

cmake/FindROOT.cmake

@@ -1,167 +0,0 @@
-# - Finds ROOT instalation
-# This module sets up ROOT information 
-# It defines:
-# ROOT_FOUND          If the ROOT is found
-# ROOT_INCLUDE_DIR    PATH to the include directory
-# ROOT_LIBRARIES      Most common libraries
-# ROOT_GUI_LIBRARIES  Most common libraries + GUI
-# ROOT_LIBRARY_DIR    PATH to the library directory 
-
-
-find_program(ROOT_CONFIG_EXECUTABLE root-config
-  PATHS $ENV{ROOTSYS}/bin)
-
-if(NOT ROOT_CONFIG_EXECUTABLE)
-  set(ROOT_FOUND FALSE)
-else()    
-  set(ROOT_FOUND TRUE)
-
-  execute_process(
-    COMMAND ${ROOT_CONFIG_EXECUTABLE} --prefix 
-    OUTPUT_VARIABLE ROOTSYS 
-    OUTPUT_STRIP_TRAILING_WHITESPACE)
-
-  execute_process(
-    COMMAND ${ROOT_CONFIG_EXECUTABLE} --version 
-    OUTPUT_VARIABLE ROOT_VERSION
-    OUTPUT_STRIP_TRAILING_WHITESPACE)
-
-  execute_process(
-    COMMAND ${ROOT_CONFIG_EXECUTABLE} --incdir
-    OUTPUT_VARIABLE ROOT_INCLUDE_DIR
-    OUTPUT_STRIP_TRAILING_WHITESPACE)
-
-  execute_process(
-    COMMAND ${ROOT_CONFIG_EXECUTABLE} --libs
-    OUTPUT_VARIABLE ROOT_LIBRARIES
-    OUTPUT_STRIP_TRAILING_WHITESPACE)
-
-  execute_process(
-    COMMAND ${ROOT_CONFIG_EXECUTABLE} --glibs
-    OUTPUT_VARIABLE ROOT_GUI_LIBRARIES
-    OUTPUT_STRIP_TRAILING_WHITESPACE)
-
-  #set(ROOT_LIBRARIES ${ROOT_LIBRARIES} -lThread -lMinuit -lHtml -lVMC -lEG -lGeom -lTreePlayer -lXMLIO -lProof)
-  #set(ROOT_LIBRARIES ${ROOT_LIBRARIES} -lProofPlayer -lMLP -lSpectrum -lEve -lRGL -lGed -lXMLParser -lPhysics)
-  set(ROOT_LIBRARY_DIR ${ROOTSYS}/lib)
-
-  # Make variables changeble to the advanced user
-  mark_as_advanced(ROOT_CONFIG_EXECUTABLE)
-
-  if(NOT ROOT_FIND_QUIETLY)
-    message(STATUS "Found ROOT ${ROOT_VERSION} in ${ROOTSYS}")
-  endif()
-endif()
-
-
-include(CMakeParseArguments)
-find_program(ROOTCINT_EXECUTABLE rootcint PATHS $ENV{ROOTSYS}/bin)
-find_program(GENREFLEX_EXECUTABLE genreflex PATHS $ENV{ROOTSYS}/bin)
-find_package(GCCXML)
-
-#----------------------------------------------------------------------------
-# function ROOT_GENERATE_DICTIONARY( dictionary   
-#                                    header1 header2 ... 
-#                                    LINKDEF linkdef1 ... 
-#                                    OPTIONS opt1...)
-function(ROOT_GENERATE_DICTIONARY dictionary)
-  CMAKE_PARSE_ARGUMENTS(ARG "" "" "LINKDEF;OPTIONS" "" ${ARGN})
-  #---Get the list of header files-------------------------
-  set(headerfiles)
-  foreach(fp ${ARG_UNPARSED_ARGUMENTS})
-    file(GLOB files ${fp})
-    if(files)
-      foreach(f ${files})
-        if(NOT f MATCHES LinkDef)
-          set(headerfiles ${headerfiles} ${f})
-        endif()
-      endforeach()
-    else()
-      set(headerfiles ${headerfiles} ${fp})
-    endif()
-  endforeach()
-  #---Get the list of include directories------------------
-  get_directory_property(incdirs INCLUDE_DIRECTORIES)
-  set(includedirs) 
-  foreach( d ${incdirs})    
-   set(includedirs ${includedirs} -I${d})
-  endforeach()
-  #---Get LinkDef.h file------------------------------------
-  set(linkdefs)
-  foreach( f ${ARG_LINKDEF})
-    if( IS_ABSOLUTE ${f})
-      set(linkdefs ${linkdefs} ${f})
-    else() 
-      if(EXISTS ${CMAKE_CURRENT_SOURCE_DIR}/inc/${f})
-        set(linkdefs ${linkdefs} ${CMAKE_CURRENT_SOURCE_DIR}/inc/${f})
-      else()
-        set(linkdefs ${linkdefs} ${CMAKE_CURRENT_SOURCE_DIR}/${f})
-      endif()
-    endif()
-  endforeach()
-  #---call rootcint------------------------------------------
-  add_custom_command(OUTPUT ${dictionary}.cxx ${dictionary}.h
-                     COMMAND ${ROOTCINT_EXECUTABLE} -cint -f  ${dictionary}.cxx 
-                                          -c ${ARG_OPTIONS} ${includedirs} ${headerfiles} ${linkdefs} 
-                     DEPENDS ${headerfiles} ${linkdefs})
-endfunction()
-
-#----------------------------------------------------------------------------
-# function REFLEX_GENERATE_DICTIONARY(dictionary   
-#                                     header1 header2 ... 
-#                                     SELECTION selectionfile ... 
-#                                     OPTIONS opt1...)
-function(REFLEX_GENERATE_DICTIONARY dictionary)  
-  CMAKE_PARSE_ARGUMENTS(ARG "" "" "SELECTION;OPTIONS" "" ${ARGN})
-  #---Get the list of header files-------------------------
-  set(headerfiles)
-  foreach(fp ${ARG_UNPARSED_ARGUMENTS})
-    file(GLOB files ${fp})
-    if(files)
-      foreach(f ${files})
-        set(headerfiles ${headerfiles} ${f})
-      endforeach()
-    else()
-      set(headerfiles ${headerfiles} ${fp})
-    endif()
-  endforeach()
-  #---Get Selection file------------------------------------
-  if(IS_ABSOLUTE ${ARG_SELECTION})
-    set(selectionfile ${ARG_SELECTION})
-  else() 
-    set(selectionfile ${CMAKE_CURRENT_SOURCE_DIR}/${ARG_SELECTION})
-  endif()
-  #---Get the list of include directories------------------
-  get_directory_property(incdirs INCLUDE_DIRECTORIES)
-  set(includedirs) 
-  foreach( d ${incdirs})    
-    set(includedirs ${includedirs} -I${d})
-  endforeach()
-  #---Get preprocessor definitions--------------------------
-  get_directory_property(defs COMPILE_DEFINITIONS)
-  foreach( d ${defs})    
-   set(definitions ${definitions} -D${d})
-  endforeach()
-  #---Nanes and others---------------------------------------
-  set(gensrcdict ${dictionary}.cpp)
-  if(MSVC)
-    set(gccxmlopts "--gccxmlopt=\"--gccxml-compiler cl\"")
-  else()
-    #set(gccxmlopts "--gccxmlopt=\'--gccxml-cxxflags -m64 \'")
-    set(gccxmlopts)
-  endif()  
-  #set(rootmapname ${dictionary}Dict.rootmap)
-  #set(rootmapopts --rootmap=${rootmapname} --rootmap-lib=${libprefix}${dictionary}Dict)
-  #---Check GCCXML and get path-----------------------------
-  if(GCCXML)
-    get_filename_component(gccxmlpath ${GCCXML} PATH)
-  else()
-    message(WARNING "GCCXML not found. Install and setup your environment to find 'gccxml' executable")
-  endif()
-  #---Actual command----------------------------------------
-  add_custom_command(OUTPUT ${gensrcdict} ${rootmapname}     
-                     COMMAND ${GENREFLEX_EXECUTABLE} ${headerfiles} -o ${gensrcdict} ${gccxmlopts} ${rootmapopts} --select=${selectionfile}
-                             --gccxmlpath=${gccxmlpath} ${ARG_OPTIONS} ${includedirs} ${definitions}
-                     DEPENDS ${headerfiles} ${selectionfile})
-endfunction()
-  

cmk.sh

@@ -1,143 +0,0 @@
-#!/bin/bash
-BUILDDIR="build"
-HDF5DIR="/opt/hdf5v1.10.0"
-HDF5=0
-COMPILERTHREADS=0
-
-CLEAN=0
-REBUILD=0
-CMAKE_PRE=""
-CMAKE_POST=""
-
-usage() { echo -e "
-Usage: $0 [-c] [-b] [-h] [-d <HDF5 directory>] [-j]
- -[no option]: only make
- -c: Clean
- -b: Builds/Rebuilds CMake files normal mode
- -h: Builds/Rebuilds Cmake files with HDF5 package
- -d: HDF5 Custom Directory
- -j: Number of threads to compile through
- 
-For only make:
-./cmk.sh
-
-For make clean;make:
-./cmk.sh -c
-
-For using hdf5 without default dir /opt/hdf5v1.10.0:
-./cmk.sh -h
-
-For using hdf5 without custom dir /blabla:
-./cmk.sh -h -d /blabla
-
-For rebuilding cmake without hdf5 (Use this if you had previously run with hdf5 and now you dont want it)
-./cmk.sh -b
-
-For using multiple cores to compile faster:
-(all these options work)
-./cmk.sh -j9
-./cmk.sh -cj9 #with clean
-./cmk.sh -hj9 #with hdf5
-./cmk.sh -j9 -h #with hdf
- 
- " ; exit 1; }
-
-while getopts ":bchd:j:" opt ; do
-	case $opt in
-	b) 
-		echo "Building of CMake files Required"
-		REBUILD=1
-		;;
-	c) 
-		echo "Clean Required"
-		CLEAN=1
-		;;
-	h) 
-		echo "Building of CMake files with HDF5 option Required"
-		HDF5=1
-		REBUILD=1
-		;;
-	d) 
-		echo "New HDF5 directory: $OPTARG" 
-		HDF5DIR=$OPTARG
-		;;
-	j) 
-		echo "Number of compiler threads: $OPTARG" 
-		COMPILERTHREADS=$OPTARG
-		;;
-    \?)
-     	echo "Invalid option: -$OPTARG" 
-		usage
-      	exit 1
-      	;;
-    :)
-      	echo "Option -$OPTARG requires an argument."
-		usage
-      	exit 1
-      	;;	
-	esac
-done
-
-
-
-
-
-
-#build dir doesnt exist
-if [ ! -d "$BUILDDIR" ] ; then
-	echo "No Build Directory. Building of Cmake files required"
-	mkdir $BUILDDIR;
-	REBUILD=1
-else
-	#rebuild not requested, but no makefile
-	if [ $REBUILD -eq 0 ] && [ ! -f "$BUILDDIR/Makefile" ] ; then
-		echo "No Makefile. Building of Cmake files required"
-		REBUILD=1
-	fi
-fi
-
-
-#hdf5 rebuild
-if [ $HDF5 -eq 1 ]; then
-	CMAKE_PRE+="HDF5_ROOT="$HDF5DIR
-	CMAKE_POST+="-DUSE_HDF5=ON"
-#normal mode rebuild
-else
-	CMAKE_POST+="-DUSE_HDF5=OFF"
-fi
-
-
-#enter build dir
-cd $BUILDDIR;
-echo "in "$PWD
-
-
-
-#cmake
-if [ $REBUILD -eq 1 ]; then
-	rm -f CMakeCache.txt
-	BUILDCOMMAND="$CMAKE_PRE cmake $CMAKE_POST .."
-	echo $BUILDCOMMAND
-	eval $BUILDCOMMAND
-fi
-
-#make clean
-if [ $CLEAN -eq 1 ]; then
-	make clean;
-fi
-
-
-#make
-if [ $COMPILERTHREADS -gt 0 ]; then
-	BUILDCOMMAND="make -j$COMPILERTHREADS"
-	echo $BUILDCOMMAND
-	eval $BUILDCOMMAND
-else
-	make
-fi
-
-
-
-
-
-

commitVersions.sh

@@ -1,15 +0,0 @@
-sh updateSvnVersion.sh
-
-cd slsDetectorGui
-git commit -a -m "updating versions"
-git push origin developer:developer
-
-cd ../slsDetectorSoftware
-git commit -a -m "updating versions"
-git push origin developer:developer
-
-cd ../slsReceiverSoftware
-git commit -a -m "updating versions"
-git push origin developer:developer
-
-cd ..

configure

@@ -1,58 +0,0 @@
-##!/bin/bash
-
-: ${INSTALLROOT=$PWD}
-read -p "Installation directory [default:\"$INSTALLROOT\"]:" -e t3
-if [ -z "$t3" ]
-then
-echo
-else
-	INSTALLROOT=$t3
-fi
-echo "INSTALLROOT will be  \"$INSTALLROOT\""	
-export INSTALLROOT
-
-: ${BINDIR="bin"}
-read -p "Binaries directory [default:\"$BINDIR\"]:" -e t4
-if [ -z "$t4" ]
-then
-	BINDIR=$INSTALLROOT/$BINDIR
-else
-	BINDIR=$INSTALLROOT/$t4
-fi
-echo "BINDIR will be  \"$BINDIR\""	
-export BINDIR
-
-: ${LIBDIR="bin"}
-read -p "Libraries directory [default:\"$LIBDIR\"]:" -e t5
-if [ -z "$t5" ]
-then
-	LIBDIR=$INSTALLROOT/$LIBDIR
-else
-	LIBDIR=$INSTALLROOT/$t5
-fi	
-echo "LIBDIR will be  \"$LIBDIR\""	
-export LIBDIR
-
-:  ${INCDIR="include"}
-read -p "Includes directory [default:\"$INCDIR\"]:" -e t6
-if [ -z "$t6" ]
-then
-	INCDIR=$INSTALLROOT/$INCDIR
-else
-	INCDIR=$INSTALLROOT/$t6
-fi	
-echo "INCDIR will be  \"$INCDIR\""	
-export INCDIR
-
-:  ${DOCDIR="doc"}
-read -p "Documentation directory [default:\"$DOCDIR\"]:" -e t7
-if [ -z "$t7" ]
-then
-	DOCDIR=$INSTALLROOT/$DOCDIR
-else	
-	DOCDIR=$INSTALLROOT/$t7
-fi
-echo "DOCDIR will be  \"$DOCDIR\""
-export DOCDIR
-
-

docs/html/angularCalibrationHowTo/angularCalibrationHowTo.html

@@ -1,6 +1,6 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
 
-<!--Converted with LaTeX2HTML 2008 (1.71)
+<!--Converted with LaTeX2HTML 2012 (1.2)
 original version by:  Nikos Drakos, CBLU, University of Leeds
 * revised and updated by:  Marcus Hennecke, Ross Moore, Herb Swan
 * with significant contributions from:
@@ -13,7 +13,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <META NAME="resource-type" CONTENT="document">
 <META NAME="distribution" CONTENT="global">
 
-<META NAME="Generator" CONTENT="LaTeX2HTML v2008">
+<META NAME="Generator" CONTENT="LaTeX2HTML v2012">
 <META HTTP-EQUIV="Content-Style-Type" CONTENT="text/css">
 
 <LINK REL="STYLESHEET" HREF="angularCalibrationHowTo.css">
@@ -25,12 +25,9 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <!--Navigation Panel-->
 <A NAME="tex2html6"
   HREF="node1.html">
-<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next"
- SRC="file:/usr/share/latex2html/icons/next.png"></A> 
-<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up"
- SRC="file:/usr/share/latex2html/icons/up_g.png"> 
-<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous"
- SRC="file:/usr/share/latex2html/icons/prev_g.png">   
+<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next" SRC="next.png"></A> 
+<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up" SRC="up_g.png"> 
+<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev_g.png">   
 <BR>
 <B> Next:</B> <A NAME="tex2html7"
   HREF="node1.html">Introduction</A>
@@ -44,7 +41,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <DIV>
 
 <P ALIGN="CENTER"><STRONG>Anna Bergamaschi</STRONG></P>
-<P ALIGN="CENTER"><STRONG>August 24, 2017</STRONG></P>
+<P ALIGN="CENTER"><STRONG>April 8, 2019</STRONG></P>
 </DIV>
 
 <P>
@@ -78,7 +75,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <BR><HR>
 <ADDRESS>
 Thattil Dhanya
-2017-08-24
+2019-04-08
 </ADDRESS>
 </BODY>
 </HTML>

docs/html/angularCalibrationHowTo/images.pl

@@ -1,4 +1,4 @@
-# LaTeX2HTML 2008 (1.71)
+# LaTeX2HTML 2012 (1.2)
 # Associate images original text with physical files.
 
 
@@ -44,18 +44,18 @@ $cached_env_img{$key} = q|<IMG
  SRC="|."$dir".q|img9.png"
  ALT="$p=50&nbsp;\mu m$">|; 
 
-$key = q/_6;MSF=1.6;AAT/;
-$cached_env_img{$key} = q|<IMG
- WIDTH="12" HEIGHT="30" ALIGN="MIDDLE" BORDER="0"
- SRC="|."$dir".q|img10.png"
- ALT="$_6$">|; 
-
 $key = q/C_{peak};MSF=1.6;AAT/;
 $cached_env_img{$key} = q|<IMG
  WIDTH="43" HEIGHT="30" ALIGN="MIDDLE" BORDER="0"
  SRC="|."$dir".q|img2.png"
  ALT="$C_{peak}$">|; 
 
+$key = q/_6;MSF=1.6;AAT/;
+$cached_env_img{$key} = q|<IMG
+ WIDTH="12" HEIGHT="30" ALIGN="MIDDLE" BORDER="0"
+ SRC="|."$dir".q|img10.png"
+ ALT="$_6$">|; 
+
 $key = q/includegraphics[width=textwidth]{peakFit.eps};AAT/;
 $cached_env_img{$key} = q|<IMG
  WIDTH="555" HEIGHT="707" ALIGN="BOTTOM" BORDER="0"
@@ -74,18 +74,18 @@ $cached_env_img{$key} = q|<IMG
  SRC="|."$dir".q|img16.png"
  ALT="\includegraphics[width=\textwidth]{setupAngcal.eps}">|; 
 
-$key = q/pm;MSF=1.6;AAT/;
-$cached_env_img{$key} = q|<IMG
- WIDTH="17" HEIGHT="30" ALIGN="MIDDLE" BORDER="0"
- SRC="|."$dir".q|img12.png"
- ALT="$\pm$">|; 
-
 $key = q/includegraphics[width=textwidth]{angleFit.eps};AAT/;
 $cached_env_img{$key} = q|<IMG
  WIDTH="555" HEIGHT="707" ALIGN="BOTTOM" BORDER="0"
  SRC="|."$dir".q|img18.png"
  ALT="\includegraphics[width=\textwidth]{angleFit.eps}">|; 
 
+$key = q/pm;MSF=1.6;AAT/;
+$cached_env_img{$key} = q|<IMG
+ WIDTH="17" HEIGHT="30" ALIGN="MIDDLE" BORDER="0"
+ SRC="|."$dir".q|img12.png"
+ ALT="$\pm$">|; 
+
 $key = q/{displaymath}Theta_e=Theta_o^i-arctanBig(frac{pcdot(C_{peak}-C_{center}^i)}{R^i}Big),{displaymath};MSF=1.6;AAT/;
 $cached_env_img{$key} = q|<IMG
  WIDTH="291" HEIGHT="41" BORDER="0"
@@ -96,13 +96,13 @@ $cached_env_img{$key} = q|<IMG
 
 $key = q/theta;MSF=1.6;AAT/;
 $cached_env_img{$key} = q|<IMG
- WIDTH="12" HEIGHT="14" ALIGN="BOTTOM" BORDER="0"
+ WIDTH="12" HEIGHT="15" ALIGN="BOTTOM" BORDER="0"
  SRC="|."$dir".q|img1.png"
  ALT="$\theta$">|; 
 
 $key = q/R^i;MSF=1.6;AAT/;
 $cached_env_img{$key} = q|<IMG
- WIDTH="22" HEIGHT="16" ALIGN="BOTTOM" BORDER="0"
+ WIDTH="22" HEIGHT="17" ALIGN="BOTTOM" BORDER="0"
  SRC="|."$dir".q|img8.png"
  ALT="$R^i$">|; 
 

docs/html/angularCalibrationHowTo/index.html

@@ -1,6 +1,6 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
 
-<!--Converted with LaTeX2HTML 2008 (1.71)
+<!--Converted with LaTeX2HTML 2012 (1.2)
 original version by:  Nikos Drakos, CBLU, University of Leeds
 * revised and updated by:  Marcus Hennecke, Ross Moore, Herb Swan
 * with significant contributions from:
@@ -13,7 +13,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <META NAME="resource-type" CONTENT="document">
 <META NAME="distribution" CONTENT="global">
 
-<META NAME="Generator" CONTENT="LaTeX2HTML v2008">
+<META NAME="Generator" CONTENT="LaTeX2HTML v2012">
 <META HTTP-EQUIV="Content-Style-Type" CONTENT="text/css">
 
 <LINK REL="STYLESHEET" HREF="angularCalibrationHowTo.css">
@@ -25,12 +25,9 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <!--Navigation Panel-->
 <A NAME="tex2html6"
   HREF="node1.html">
-<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next"
- SRC="file:/usr/share/latex2html/icons/next.png"></A> 
-<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up"
- SRC="file:/usr/share/latex2html/icons/up_g.png"> 
-<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous"
- SRC="file:/usr/share/latex2html/icons/prev_g.png">   
+<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next" SRC="next.png"></A> 
+<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up" SRC="up_g.png"> 
+<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev_g.png">   
 <BR>
 <B> Next:</B> <A NAME="tex2html7"
   HREF="node1.html">Introduction</A>
@@ -44,7 +41,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <DIV>
 
 <P ALIGN="CENTER"><STRONG>Anna Bergamaschi</STRONG></P>
-<P ALIGN="CENTER"><STRONG>August 24, 2017</STRONG></P>
+<P ALIGN="CENTER"><STRONG>April 8, 2019</STRONG></P>
 </DIV>
 
 <P>
@@ -78,7 +75,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <BR><HR>
 <ADDRESS>
 Thattil Dhanya
-2017-08-24
+2019-04-08
 </ADDRESS>
 </BODY>
 </HTML>

docs/html/angularCalibrationHowTo/internals.pl

@@ -1,4 +1,4 @@
-# LaTeX2HTML 2008 (1.71)
+# LaTeX2HTML 2012 (1.2)
 # Associate internals original text with physical files.
 
 

docs/html/angularCalibrationHowTo/labels.pl

@@ -1,4 +1,4 @@
-# LaTeX2HTML 2008 (1.71)
+# LaTeX2HTML 2012 (1.2)
 # Associate labels original text with physical files.
 
 
@@ -29,7 +29,7 @@ $noresave{$key} = "$nosave";
 1;
 
 
-# LaTeX2HTML 2008 (1.71)
+# LaTeX2HTML 2012 (1.2)
 # labels from external_latex_labels array.
 
 

docs/html/angularCalibrationHowTo/node1.html

@@ -1,6 +1,6 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
 
-<!--Converted with LaTeX2HTML 2008 (1.71)
+<!--Converted with LaTeX2HTML 2012 (1.2)
 original version by:  Nikos Drakos, CBLU, University of Leeds
 * revised and updated by:  Marcus Hennecke, Ross Moore, Herb Swan
 * with significant contributions from:
@@ -13,7 +13,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <META NAME="resource-type" CONTENT="document">
 <META NAME="distribution" CONTENT="global">
 
-<META NAME="Generator" CONTENT="LaTeX2HTML v2008">
+<META NAME="Generator" CONTENT="LaTeX2HTML v2012">
 <META HTTP-EQUIV="Content-Style-Type" CONTENT="text/css">
 
 <LINK REL="STYLESHEET" HREF="angularCalibrationHowTo.css">
@@ -28,16 +28,13 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <!--Navigation Panel-->
 <A NAME="tex2html23"
   HREF="node2.html">
-<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next"
- SRC="file:/usr/share/latex2html/icons/next.png"></A> 
+<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next" SRC="next.png"></A> 
 <A NAME="tex2html21"
   HREF="angularCalibrationHowTo.html">
-<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up"
- SRC="file:/usr/share/latex2html/icons/up.png"></A> 
+<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up" SRC="up.png"></A> 
 <A NAME="tex2html15"
   HREF="angularCalibrationHowTo.html">
-<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous"
- SRC="file:/usr/share/latex2html/icons/prev.png"></A>   
+<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev.png"></A>   
 <BR>
 <B> Next:</B> <A NAME="tex2html24"
   HREF="node2.html">Data acquisition</A>
@@ -55,7 +52,7 @@ Introduction</A>
 
 <P>
 In order to convert from strip number to 2<IMG
- WIDTH="12" HEIGHT="14" ALIGN="BOTTOM" BORDER="0"
+ WIDTH="12" HEIGHT="15" ALIGN="BOTTOM" BORDER="0"
  SRC="img1.png"
  ALT="$\theta$">-angle, an accurate angular calibration of the detector must be performed (for details see the paper Bergamaschi, A. et al. (2010). J. Synchrotron Rad. 17, 653-668). 
 <BR>
@@ -107,7 +104,7 @@ where the parameters <IMG
  WIDTH="53" HEIGHT="36" ALIGN="MIDDLE" BORDER="0"
  SRC="img7.png"
  ALT="$C_{center}^{i}$"> is the central channel  and <IMG
- WIDTH="22" HEIGHT="16" ALIGN="BOTTOM" BORDER="0"
+ WIDTH="22" HEIGHT="17" ALIGN="BOTTOM" BORDER="0"
  SRC="img8.png"
  ALT="$R^i$"> is the distance of the module <IMG
  WIDTH="10" HEIGHT="17" ALIGN="BOTTOM" BORDER="0"
@@ -121,7 +118,7 @@ Finally, the global offset of the detector system is precisely determined by ref
 
 <P>
 The same function of equation&nbsp;<A HREF="#eq:angcal">1</A>, with the parameters obtained from the calibration, is used in order to convert from channel number to 2<IMG
- WIDTH="12" HEIGHT="14" ALIGN="BOTTOM" BORDER="0"
+ WIDTH="12" HEIGHT="15" ALIGN="BOTTOM" BORDER="0"
  SRC="img1.png"
  ALT="$\theta$">-angle.
 
@@ -160,16 +157,13 @@ These results show that  the angular calibration allows a resolution in determin
 <!--Navigation Panel-->
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+2019-04-08
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+<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev.png"></A>   
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@@ -160,16 +157,13 @@ After fitting all modules you can click on the <I>Write Angular Calibration</I>
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+<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev.png"></A>   
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   HREF="node4.html">Setup calibration files</A>
@@ -180,7 +174,7 @@ After fitting all modules you can click on the <I>Write Angular Calibration</I>
 <!--End of Navigation Panel-->
 <ADDRESS>
 Thattil Dhanya
-2017-08-24
+2019-04-08
 </ADDRESS>
 </BODY>
 </HTML>

docs/html/angularCalibrationHowTo/node4.html

@@ -1,6 +1,6 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
 
-<!--Converted with LaTeX2HTML 2008 (1.71)
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+<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev.png"></A>   
 <BR>
 <B> Next:</B> <A NAME="tex2html56"
   HREF="node5.html">About this document ...</A>
@@ -62,7 +59,7 @@ while for the GUI the file name should be specified in the configuration file (w
 <BR><HR>
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-2017-08-24
+2019-04-08
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-<!--Converted with LaTeX2HTML 2008 (1.71)
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@@ -13,7 +13,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
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+<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev.png"></A>   
 <BR>
 <B> Up:</B> <A NAME="tex2html62"
   HREF="angularCalibrationHowTo.html">Angular calibration wizard manual</A>
@@ -48,7 +45,7 @@ About this document ...</A>
 </H1>
  <STRONG>Angular calibration wizard manual</STRONG><P>
 This document was generated using the
-<A HREF="http://www.latex2html.org/"><STRONG>LaTeX</STRONG>2<tt>HTML</tt></A> translator Version 2008 (1.71)
+<A HREF="http://www.latex2html.org/"><STRONG>LaTeX</STRONG>2<tt>HTML</tt></A> translator Version 2012 (1.2)
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 Copyright &#169; 1993, 1994, 1995, 1996,
 <A HREF="http://cbl.leeds.ac.uk/nikos/personal.html">Nikos Drakos</A>, 
@@ -59,13 +56,13 @@ Copyright &#169; 1997, 1998, 1999,
 Mathematics Department, Macquarie University, Sydney.
 <P>
 The command line arguments were: <BR>
- <STRONG>latex2html</STRONG> <TT>-split 4 angularCalibrationHowTo.tex</TT>
+ <STRONG>latex2html</STRONG> <TT>-local_icons -split 4 angularCalibrationHowTo.tex</TT>
 <P>
-The translation was initiated by Thattil Dhanya on 2017-08-24
+The translation was initiated by Thattil Dhanya on 2019-04-08
 <BR><HR>
 <ADDRESS>
 Thattil Dhanya
-2017-08-24
+2019-04-08
 </ADDRESS>
 </BODY>
 </HTML>

docs/html/energyCalibrationHowTo/energyCalibrationHowTo.html

@@ -1,6 +1,6 @@
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-<!--Converted with LaTeX2HTML 2008 (1.71)
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@@ -13,7 +13,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
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@@ -25,12 +25,9 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
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- SRC="file:/usr/share/latex2html/icons/prev_g.png">   
+<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next" SRC="next.png"></A> 
+<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up" SRC="up_g.png"> 
+<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev_g.png">   
 <BR>
 <B> Next:</B> <A NAME="tex2html10"
   HREF="node1.html">Introduction</A>
@@ -44,7 +41,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <DIV>
 
 <P ALIGN="CENTER"><STRONG>Anna Bergamaschi</STRONG></P>
-<P ALIGN="CENTER"><STRONG>August 24, 2017</STRONG></P>
+<P ALIGN="CENTER"><STRONG>April 8, 2019</STRONG></P>
 </DIV>
 
 <P>
@@ -78,7 +75,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <BR><HR>
 <ADDRESS>
 Thattil Dhanya
-2017-08-24
+2019-04-08
 </ADDRESS>
 </BODY>
 </HTML>

docs/html/energyCalibrationHowTo/images.pl

@@ -1,4 +1,4 @@
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+# LaTeX2HTML 2012 (1.2)
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 $key = q/O;MSF=1.6;AAT/;
 $cached_env_img{$key} = q|<IMG
- WIDTH="17" HEIGHT="14" ALIGN="BOTTOM" BORDER="0"
+ WIDTH="17" HEIGHT="15" ALIGN="BOTTOM" BORDER="0"
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  ALT="$O$">|; 
 
@@ -28,7 +28,7 @@ $cached_env_img{$key} = q|<IMG
 
 $key = q/includegraphics[width=textwidth]{calibrateModule.eps};AAT/;
 $cached_env_img{$key} = q|<IMG
- WIDTH="555" HEIGHT="694" ALIGN="BOTTOM" BORDER="0"
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  SRC="|."$dir".q|img40.png"
  ALT="\includegraphics[width=\textwidth]{calibrateModule.eps}">|; 
 
@@ -54,7 +54,7 @@ $cached_env_img{$key} = q|<IMG
 
 $key = q/ENC;MSF=1.6;AAT/;
 $cached_env_img{$key} = q|<IMG
- WIDTH="44" HEIGHT="14" ALIGN="BOTTOM" BORDER="0"
+ WIDTH="44" HEIGHT="15" ALIGN="BOTTOM" BORDER="0"
  SRC="|."$dir".q|img3.png"
  ALT="$ENC$">|; 
 
@@ -84,7 +84,7 @@ $cached_env_img{$key} = q|<IMG
 
 $key = q/G;MSF=1.6;AAT/;
 $cached_env_img{$key} = q|<IMG
- WIDTH="17" HEIGHT="14" ALIGN="BOTTOM" BORDER="0"
+ WIDTH="17" HEIGHT="15" ALIGN="BOTTOM" BORDER="0"
  SRC="|."$dir".q|img26.png"
  ALT="$G$">|; 
 
@@ -182,7 +182,7 @@ $cached_env_img{$key} = q|<IMG
 
 $key = q/includegraphics[width=textwidth]{addEnergy.eps};AAT/;
 $cached_env_img{$key} = q|<IMG
- WIDTH="555" HEIGHT="694" ALIGN="BOTTOM" BORDER="0"
+ WIDTH="514" HEIGHT="654" ALIGN="BOTTOM" BORDER="0"
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@@ -194,13 +194,13 @@ $cached_env_img{$key} = q|<IMG
 
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 $cached_env_img{$key} = q|<IMG
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  ALT="$CS=$">|; 
 

docs/html/energyCalibrationHowTo/index.html

@@ -1,6 +1,6 @@
 <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 3.2 Final//EN">
 
-<!--Converted with LaTeX2HTML 2008 (1.71)
+<!--Converted with LaTeX2HTML 2012 (1.2)
 original version by:  Nikos Drakos, CBLU, University of Leeds
 * revised and updated by:  Marcus Hennecke, Ross Moore, Herb Swan
 * with significant contributions from:
@@ -13,7 +13,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
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@@ -25,12 +25,9 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
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   HREF="node1.html">
-<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next"
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-<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous"
- SRC="file:/usr/share/latex2html/icons/prev_g.png">   
+<IMG WIDTH="37" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="next" SRC="next.png"></A> 
+<IMG WIDTH="26" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="up" SRC="up_g.png"> 
+<IMG WIDTH="63" HEIGHT="24" ALIGN="BOTTOM" BORDER="0" ALT="previous" SRC="prev_g.png">   
 <BR>
 <B> Next:</B> <A NAME="tex2html10"
   HREF="node1.html">Introduction</A>
@@ -44,7 +41,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <DIV>
 
 <P ALIGN="CENTER"><STRONG>Anna Bergamaschi</STRONG></P>
-<P ALIGN="CENTER"><STRONG>August 24, 2017</STRONG></P>
+<P ALIGN="CENTER"><STRONG>April 8, 2019</STRONG></P>
 </DIV>
 
 <P>
@@ -78,7 +75,7 @@ original version by:  Nikos Drakos, CBLU, University of Leeds
 <BR><HR>
 <ADDRESS>
 Thattil Dhanya
-2017-08-24
+2019-04-08
 </ADDRESS>
 </BODY>
 </HTML>

docs/html/energyCalibrationHowTo/internals.pl

@@ -1,4 +1,4 @@
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-$key = q/fig:addenergy/;
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docs/html/energyCalibrationHowTo/labels.pl

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 $external_labels{$key} = "$URL/" . q|node2.html|; 
 $noresave{$key} = "$nosave";
 
-$key = q/fig:addenergy/;
-$external_labels{$key} = "$URL/" . q|node3.html|; 
-$noresave{$key} = "$nosave";
-
 $key = q/fig:thrscanexpl/;
 $external_labels{$key} = "$URL/" . q|node1.html|; 
 $noresave{$key} = "$nosave";
 
+$key = q/fig:addenergy/;
+$external_labels{$key} = "$URL/" . q|node3.html|; 
+$noresave{$key} = "$nosave";
+
 $key = q/fig:expthrscan/;
 $external_labels{$key} = "$URL/" . q|node1.html|; 
 $noresave{$key} = "$nosave";
@@ -49,7 +49,7 @@ $noresave{$key} = "$nosave";
 1;
 
 
-# LaTeX2HTML 2008 (1.71)
+# LaTeX2HTML 2012 (1.2)
 # labels from external_latex_labels array.
 
 
@@ -85,14 +85,14 @@ $key = q/fig:guiencallog/;
 $external_latex_labels{$key} = q|5|; 
 $noresave{$key} = "$nosave";
 
-$key = q/fig:addenergy/;
-$external_latex_labels{$key} = q|7|; 
-$noresave{$key} = "$nosave";
-
 $key = q/fig:thrscanexpl/;
 $external_latex_labels{$key} = q|1|; 
 $noresave{$key} = "$nosave";
 
+$key = q/fig:addenergy/;
+$external_latex_labels{$key} = q|7|; 
+$noresave{$key} = "$nosave";
+
 $key = q/fig:expthrscan/;
 $external_latex_labels{$key} = q|2|; 
 $noresave{$key} = "$nosave";