interpolate vtrim for eiger

fix for m3 crash

.clang-tidy

@@ -18,7 +18,8 @@ Checks:          '*,
                     -google-readability-todo, 
                     -google-readability-braces-around-statements,
                     -modernize-use-trailing-return-type,
-                    -readability-isolate-declaration'
+                    -readability-isolate-declaration,
+                    -llvmlibc-*'
 
 HeaderFilterRegex: \.h
 AnalyzeTemporaryDtors: false

.travis.yml

@@ -31,7 +31,7 @@ script:
 
 deploy:
   provider: script
-  script: find $HOME/miniconda/envs/testenv/conda-bld/${TRAVIS_OS_NAME}-64 -name "*.tar.bz2" -exec anaconda -t $CONDA_TOKEN upload --force {} \;
+  script: find $HOME/miniconda/envs/testenv/conda-bld/${TRAVIS_OS_NAME}-64 -name "*.tar.bz2" -exec anaconda -v --show-traceback -t $CONDA_TOKEN upload --force {} \;
   on:
     branch: developer
     tags: true

CMakeLists.txt

@@ -1,12 +1,17 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 cmake_minimum_required(VERSION 3.12)
 project(slsDetectorPackage)
-set(PROJECT_VERSION 5.0.0)
+set(PROJECT_VERSION 6.1.1)
-include(CheckIPOSupported)
+
 set(CMAKE_CXX_FLAGS_RELEASE "-O3 -DNDEBUG")
 
 cmake_policy(SET CMP0074 NEW)
 include(cmake/project_version.cmake)
 
+#functions to add compiler flags
+include(cmake/SlsAddFlag.cmake)
+
 # Include additional modules that are used unconditionally
 include(GNUInstallDirs)
 
@@ -32,13 +37,16 @@ if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_SOURCE_DIR)
     set(SLS_MASTER_PROJECT ON)
 endif()
 
-option (SLS_USE_HDF5 "HDF5 File format" OFF)
+option(SLS_USE_HDF5 "HDF5 File format" OFF)
-option (SLS_USE_TEXTCLIENT "Text Client" ON)
+option(SLS_BUILD_SHARED_LIBRARIES "Build shared libaries" ON)
-option (SLS_USE_RECEIVER "Receiver" ON)
+option(SLS_USE_TEXTCLIENT "Text Client" ON)
-option (SLS_USE_GUI "GUI" OFF)
+option(SLS_USE_DETECTOR "Detector libs" ON)
-option (SLS_USE_SIMULATOR "Simulator" OFF)
+option(SLS_USE_RECEIVER "Receiver" ON)
-option (SLS_USE_TESTS "TESTS" OFF)
+option(SLS_USE_RECEIVER_BINARIES "Receiver binaries" ON)
-option (SLS_USE_INTEGRATION_TESTS "Integration Tests" OFF)
+option(SLS_USE_GUI "GUI" OFF)
+option(SLS_USE_SIMULATOR "Simulator" OFF)
+option(SLS_USE_TESTS "TESTS" OFF)
+option(SLS_USE_INTEGRATION_TESTS "Integration Tests" OFF)
 option(SLS_USE_SANITIZER "Sanitizers for debugging" OFF)
 option(SLS_USE_PYTHON "Python bindings" OFF)
 option(SLS_USE_CTBGUI "ctb GUI" OFF)
@@ -48,8 +56,20 @@ option(SLS_TUNE_LOCAL "tune to local machine" OFF)
 option(SLS_DEVEL_HEADERS "install headers for devel" OFF)
 option(SLS_USE_MOENCH "compile zmq and post processing for Moench" OFF)
 
-# set(ClangFormat_BIN_NAME clang-format)
+#Convenience option to switch off defaults when building Moench binaries only
-set(ClangFormat_EXCLUDE_PATTERNS  "build/" 
+option(SLS_BUILD_ONLY_MOENCH "compile only Moench" OFF)
+if(SLS_BUILD_ONLY_MOENCH)
+    message(STATUS "Build MOENCH binaries only!")
+    set(SLS_BUILD_SHARED_LIBRARIES OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
+    set(SLS_USE_TEXTCLIENT OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
+    set(SLS_USE_DETECTOR OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
+    set(SLS_USE_RECEIVER OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
+    set(SLS_USE_RECEIVER_BINARIES OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
+    set(SLS_USE_MOENCH ON CACHE BOOL "Enable" FORCE)
+endif()
+
+
+set(ClangFormat_EXCLUDE_PATTERNS    "build/" 
                                     "libs/" 
                                     "slsDetectorCalibration/" 
                                     "ctbGui/" 
@@ -59,22 +79,9 @@ set(ClangFormat_EXCLUDE_PATTERNS  "build/"
                                     ${CMAKE_BINARY_DIR})
 find_package(ClangFormat)
 
-#Enable LTO if available
-check_ipo_supported(RESULT SLS_LTO_AVAILABLE)
 
 
-# # Use ld.gold if it is available and isn't disabled explicitly
+
-# option(SLS_USE_LD_GOLD "Use GNU gold linker" ON)
-# if (SLS_USE_LD_GOLD)
-#     execute_process(COMMAND ${CMAKE_C_COMPILER} -fuse-ld=gold -Wl,--version ERROR_QUIET OUTPUT_VARIABLE LD_VERSION)
-#     if ("${LD_VERSION}" MATCHES "GNU gold")
-#         set(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fuse-ld=gold")
-#         set(CMAKE_STATIC_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fuse-ld=gold")
-#         set(CMAKE_SHARED_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} -fuse-ld=gold")
-#     else ()
-#         message(WARNING "GNU gold linker isn't available, using the default system linker.")
-#     endif ()
-# endif ()
 set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
 
 if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
@@ -83,6 +90,16 @@ if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
 endif()
 
 
+#Enable LTO if available
+include(CheckIPOSupported)
+check_ipo_supported(RESULT SLS_LTO_AVAILABLE)
+if((CMAKE_BUILD_TYPE STREQUAL "Release") AND SLS_LTO_AVAILABLE)
+    message(STATUS "Building with link time optimization")
+else()
+    message(STATUS "Building without link time optimization")
+endif()
+
+
 #Add two fake libraries to manage options
 add_library(slsProjectOptions INTERFACE)
 add_library(slsProjectWarnings INTERFACE)
@@ -90,7 +107,7 @@ target_compile_features(slsProjectOptions INTERFACE cxx_std_11)
 target_compile_options(slsProjectWarnings INTERFACE 
                                             -Wall
                                             -Wextra
-                                            -Wno-unused-parameter #Needs to be slowly mitigated
+                                            -Wno-unused-parameter
                                             # -Wold-style-cast
                                             -Wnon-virtual-dtor
                                             -Woverloaded-virtual
@@ -101,40 +118,45 @@ target_compile_options(slsProjectWarnings INTERFACE
                                             -Wvla
                                             -Wdouble-promotion
                                             -Werror=return-type
-
                                  )
 
+#Settings for C code
+add_library(slsProjectCSettings INTERFACE)
+target_compile_options(slsProjectCSettings INTERFACE 
+                                            -std=gnu99 #fixed
+                                            -Wall
+                                            -Wextra
+                                            -Wno-unused-parameter
+                                            -Wdouble-promotion
+                                            -Wformat=2
+                                            -Wredundant-decls
+                                            -Wdouble-promotion
+                                            -Werror=return-type
+                                )
+
 
 #Testing for minimum version for compilers
 if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
     if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 3.2)
         message(FATAL_ERROR "Clang version must be at least 3.2!")
     endif()
-    target_compile_options(slsProjectWarnings INTERFACE -Wshadow) #Clag does not warn on constructor
 elseif ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
     if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 4.8)
             message(FATAL_ERROR "GCC version must be at least 4.8!")
     endif()
-
     if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5)
             target_compile_options(slsProjectWarnings INTERFACE 
                                              -Wno-missing-field-initializers)
     endif()
-    
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_GREATER 6.0)
-        target_compile_options(slsProjectWarnings INTERFACE 
-                                                -Wno-misleading-indentation # mostly in rapidjson remove using clang format
-                                                -Wduplicated-cond
-                                                -Wnull-dereference )
-
-    endif()
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_GREATER 8.0)
-        target_compile_options(slsProjectWarnings INTERFACE 
-                                                -Wno-class-memaccess )
-
-    endif()
 endif()
 
+# Add or disable warnings depending on if the compiler supports them 
+# The function checks internally and sets HAS_warning-name
+sls_enable_cxx_warning("-Wnull-dereference")
+sls_enable_cxx_warning("-Wduplicated-cond")
+sls_disable_cxx_warning("-Wclass-memaccess")
+sls_disable_c_warning("-Wstringop-truncation")
+
 
 if(SLS_USE_SANITIZER)
     target_compile_options(slsProjectOptions INTERFACE -fsanitize=address,undefined -fno-omit-frame-pointer)
@@ -168,8 +190,38 @@ set(CMAKE_INSTALL_RPATH $ORIGIN)
 set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
 
 
+set(ZeroMQ_HINT "" CACHE STRING "Hint where ZeroMQ could be found")
+#Adapted from: https://github.com/zeromq/cppzmq/
+if (NOT TARGET libzmq)
+    if(ZeroMQ_HINT)
+        message(STATUS "Looking for ZeroMQ in: ${ZeroMQ_HINT}")
+        find_package(ZeroMQ 4 
+            NO_DEFAULT_PATH
+            HINTS ${ZeroMQ_DIR}
+        )
+    else()
+        find_package(ZeroMQ 4 QUIET)
+    endif()
+    
+  # libzmq autotools install: fallback to pkg-config
+  if(NOT ZeroMQ_FOUND)
+    message(STATUS "CMake libzmq package not found, trying again with pkg-config (normal install of zeromq)")
+    list (APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_LIST_DIR}/libzmq-pkg-config)
+    find_package(ZeroMQ 4 REQUIRED)
+  endif()
 
-find_package(ZeroMQ 4 REQUIRED)
+  # TODO "REQUIRED" above should already cause a fatal failure if not found, but this doesn't seem to work
+  if(NOT ZeroMQ_FOUND)
+    message(FATAL_ERROR "ZeroMQ was not found, neither as a CMake package nor via pkg-config")
+  endif()
+
+  if (ZeroMQ_FOUND AND NOT TARGET libzmq)
+    message(FATAL_ERROR "ZeroMQ version not supported!")
+  endif()
+endif()
+
+get_target_property(VAR libzmq INTERFACE_INCLUDE_DIRECTORIES)
+message(STATUS "zmq: ${VAR}")
 
 if (SLS_USE_TESTS)
     enable_testing()
@@ -177,29 +229,19 @@ if (SLS_USE_TESTS)
 endif(SLS_USE_TESTS)
 
 
-
-
 # Common functionallity to detector and receiver
 add_subdirectory(slsSupportLib)
 
-if (SLS_USE_TEXTCLIENT)
+if (SLS_USE_DETECTOR OR SLS_USE_TEXTCLIENT)
     add_subdirectory(slsDetectorSoftware)
-endif (SLS_USE_TEXTCLIENT)
+endif ()
-
 
 if (SLS_USE_RECEIVER)
-    if (SLS_USE_HDF5)
-        find_package(HDF5 1.10 COMPONENTS CXX REQUIRED)
-    endif (SLS_USE_HDF5)
     add_subdirectory(slsReceiverSoftware) 
 endif (SLS_USE_RECEIVER)
 
 if (SLS_USE_GUI)   
-    find_package(Qt4 REQUIRED)
+    add_subdirectory(slsDetectorGui)
-    find_package(Qwt 6.1 REQUIRED)
-    if (QT4_FOUND AND QWT_FOUND)
-        add_subdirectory(slsDetectorGui)
-    endif()
 endif (SLS_USE_GUI)
 
 if (SLS_USE_SIMULATOR)
@@ -211,7 +253,7 @@ if (SLS_USE_INTEGRATION_TESTS)
 endif (SLS_USE_INTEGRATION_TESTS)
 
 if (SLS_USE_PYTHON)
-    set(PYBIND11_CPP_STANDARD -std=c++11)
+    find_package (Python 3.6 COMPONENTS Interpreter Development)
     add_subdirectory(libs/pybind11)
     add_subdirectory(python)
 endif(SLS_USE_PYTHON)
@@ -232,16 +274,13 @@ if(SLS_BUILD_DOCS)
     add_subdirectory(docs)
 endif(SLS_BUILD_DOCS)
 
-
 if(SLS_USE_MOENCH)
+    add_subdirectory(slsDetectorCalibration/tiffio)
     add_subdirectory(slsDetectorCalibration/moenchExecutables)
 endif(SLS_USE_MOENCH)
 
 if(SLS_MASTER_PROJECT)
-    # Set install dir CMake packages
     set(CMAKE_INSTALL_DIR "share/cmake/${PROJECT_NAME}")
-    # Set the list of exported targets
     set(PROJECT_LIBRARIES slsSupportShared slsDetectorShared slsReceiverShared)
-    # Generate and install package config file and version
     include(cmake/package_config.cmake)
 endif()

COPYING

@@ -0,0 +1,17 @@
+The SLS Detector Package is provided under:
+
+	SPDX-License-Identifier: LGPL-3.0-or-later
+
+Being under the terms of the GNU Lesser General Public License version 3 or later, 
+according with:
+
+	LICENSES/LGPL-3.0
+
+Source code under the Apache 2.0 License have the SPDX Identifier and are 
+according with:
+
+	LICENSES/ThirdParty/Apache-2.0
+
+All contributions to the SLS Detector Package are subject to this COPYING file.
+
+

LICENSES/GPL-3.0

@@ -0,0 +1,688 @@
+Valid-License-Identifier: GPL-3.0
+Valid-License-Identifier: GPL-3.0+
+SPDX-URL: https://spdx.org/licenses/GPL-3.0-or-later.html
+Usage-Guide:
+  To use this license in source code, put one of the following SPDX
+  tag/value pairs into a comment according to the placement
+  guidelines in the licensing rules documentation.
+  For 'GNU Library General Public License (LGPL) version 3.0 only' use:
+    SPDX-License-Identifier: GPL-3.0
+  For 'GNU Library General Public License (LGPL) version 3.0 or any later
+  version' use:
+    SPDX-License-Identifier: GPL-3.0-or-later
+License-Text:
+
+                    GNU GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+                            Preamble
+
+  The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+  The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works.  By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users.  We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors.  You can apply it to
+your programs, too.
+
+  When we speak of free software, we are referring to freedom, not
+price.  Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
+free programs, and that you know you can do these things.
+
+  To protect your rights, we need to prevent others from denying you
+these rights or asking you to surrender the rights.  Therefore, you have
+certain responsibilities if you distribute copies of the software, or if
+you modify it: responsibilities to respect the freedom of others.
+
+  For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must pass on to the recipients the same
+freedoms that you received.  You must make sure that they, too, receive
+or can get the source code.  And you must show them these terms so they
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+
+  Developers that use the GNU GPL protect your rights with two steps:
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+giving you legal permission to copy, distribute and/or modify it.
+
+  For the developers' and authors' protection, the GPL clearly explains
+that there is no warranty for this free software.  For both users' and
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+  Some devices are designed to deny users access to install or run
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+stand ready to extend this provision to those domains in future versions
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+avoid the special danger that patents applied to a free program could
+make it effectively proprietary.  To prevent this, the GPL assures that
+patents cannot be used to render the program non-free.
+
+  The precise terms and conditions for copying, distribution and
+modification follow.
+
+                       TERMS AND CONDITIONS
+
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+
+  "This License" refers to version 3 of the GNU General Public License.
+
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+
+  "Additional permissions" are terms that supplement the terms of this
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+
+  If, pursuant to or in connection with a single transaction or
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+
+  A patent license is "discriminatory" if it does not include within
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+or that patent license was granted, prior to 28 March 2007.
+
+  Nothing in this License shall be construed as excluding or limiting
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+
+  12. No Surrender of Others' Freedom.
+
+  If conditions are imposed on you (whether by court order, agreement or
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+
+  13. Use with the GNU Affero General Public License.
+
+  Notwithstanding any other provision of this License, you have
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+
+  14. Revised Versions of this License.
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+  The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time.  Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+  Each version is given a distinguishing version number.  If the
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+
+  If the Program specifies that a proxy can decide which future
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+
+  Later license versions may give you additional or different
+permissions.  However, no additional obligations are imposed on any
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+
+  15. Disclaimer of Warranty.
+
+  THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
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+
+  17. Interpretation of Sections 15 and 16.
+
+  If the disclaimer of warranty and limitation of liability provided
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+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+                     END OF TERMS AND CONDITIONS
+
+            How to Apply These Terms to Your New Programs
+
+  If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
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+    <one line to give the program's name and a brief idea of what it does.>
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+    This program is free software: you can redistribute it and/or modify
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+
+    This program is distributed in the hope that it will be useful,
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+
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+
+Also add information on how to contact you by electronic and paper mail.
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+    <program>  Copyright (C) <year>  <name of author>
+    This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+    This is free software, and you are welcome to redistribute it
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+
+The hypothetical commands `show w' and `show c' should show the appropriate
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+
+  You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+<https://www.gnu.org/licenses/>.
+
+  The GNU General Public License does not permit incorporating your program
+into proprietary programs.  If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library.  If this is what you want to do, use the GNU Lesser General
+Public License instead of this License.  But first, please read
+<https://www.gnu.org/licenses/why-not-lgpl.html>.

LICENSES/LGPL-3.0

@@ -0,0 +1,179 @@
+Valid-License-Identifier: LGPL-3.0
+Valid-License-Identifier: LGPL-3.0+
+SPDX-URL: https://spdx.org/licenses/LGPL-3.0-or-later.html
+Usage-Guide:
+  To use this license in source code, put one of the following SPDX
+  tag/value pairs into a comment according to the placement
+  guidelines in the licensing rules documentation.
+  For 'GNU Library General Public License (LGPL) version 3.0 only' use:
+    SPDX-License-Identifier: LGPL-3.0
+  For 'GNU Library General Public License (LGPL) version 3.0 or any later
+  version' use:
+    SPDX-License-Identifier: LGPL-3.0-or-later
+License-Text:
+
+                   GNU LESSER GENERAL PUBLIC LICENSE
+                       Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+
+  This version of the GNU Lesser General Public License incorporates
+the terms and conditions of version 3 of the GNU General Public
+License, supplemented by the additional permissions listed below.
+
+  0. Additional Definitions.
+
+  As used herein, "this License" refers to version 3 of the GNU Lesser
+General Public License, and the "GNU GPL" refers to version 3 of the GNU
+General Public License.
+
+  "The Library" refers to a covered work governed by this License,
+other than an Application or a Combined Work as defined below.
+
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+
+  You may convey a covered work under sections 3 and 4 of this License
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+
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+   is a work based on the Library, and explaining where to find the
+   accompanying uncombined form of the same work.
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+  6. Revised Versions of the GNU Lesser General Public License.
+
+  The Free Software Foundation may publish revised and/or new versions
+of the GNU Lesser General Public License from time to time. Such new
+versions will be similar in spirit to the present version, but may
+differ in detail to address new problems or concerns.
+
+  Each version is given a distinguishing version number. If the
+Library as you received it specifies that a certain numbered version
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+applies to it, you have the option of following the terms and
+conditions either of that published version or of any later version
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+received it does not specify a version number of the GNU Lesser
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+
+  If the Library as you received it specifies that a proxy can decide
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+permanent authorization for you to choose that version for the
+Library.

LICENSES/Third Party/Apache-2.0

@@ -0,0 +1,210 @@
+Valid-License-Identifier: Apache-2.0
+SPDX-URL: https://spdx.org/licenses/Apache-2.0.html
+Usage-Guide:
+  To use this license in source code, put one of the following SPDX
+  tag/value pairs into a comment according to the placement
+  guidelines in the licensing rules documentation.
+    SPDX-License-Identifier: Apache-2.0
+License-Text:
+
+                                 Apache License
+                           Version 2.0, January 2004
+                        http://www.apache.org/licenses/
+
+   TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
+
+   1. Definitions.
+
+      "License" shall mean the terms and conditions for use, reproduction,
+      and distribution as defined by Sections 1 through 9 of this document.
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+   you may not use this file except in compliance with the License.
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+
+       http://www.apache.org/licenses/LICENSE-2.0
+
+   Unless required by applicable law or agreed to in writing, software
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+   limitations under the License.

README.md

@@ -1,5 +1,14 @@
+### Note
+
+Please do not update to any xxxx.xx.xx.dev0 tags. They are not releases, but tags for internal usage.
+Use only releases with tags such as x.x.x or x.x.x-rcx.
+
 ### Documentation
-Detailed documentation can be found on the [official site.](https://www.psi.ch/detectors/users-support)
+##### 5.0.0 - Latest Release
+Detailed documentation on the latest release can be found in the [software wiki](https://slsdetectorgroup.github.io/devdoc/index.html) and on the [official site](https://www.psi.ch/en/detectors/software).
+
+##### Older Releases
+Documentation is found in the package.
 
 ### Binaries
 Binaries for the slsDetectorPackage are available through conda. 
@@ -7,6 +16,7 @@ Binaries for the slsDetectorPackage are available through conda.
 #Add conda channels
 conda config --add channels conda-forge
 conda config --add channels slsdetectorgroup
+conda config --set channel_priority strict
 
 conda install slsdetlib   #only shared lib and command line
 conda install slsdet      #python bindings (includes slsdetlib)
@@ -24,10 +34,8 @@ git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git
 
 ```
 #### Dependencies 
-* Lib: c++11 compiler (gcc=>4.8), ZeroMQ 4
+
-* Gui: Qt 4.8 and Qwt 6.0
+Refer [this page](https://slsdetectorgroup.github.io/devdoc/dependencies.html)  for dependencies.
-* Calibration wizards and ctbGUI: ROOT
-* Optional: HDF5
 
 
 #### Compilation 
@@ -37,27 +45,39 @@ cmk.sh or directly with cmake for more control.
 
 **1. Compile using script cmk.sh**<br>
 
-After compiling, the libraries and executables will be found in `slsDetectorPackage/build/bin` directory<br>
+These are mainly aimed at those not familiar with using ccmake and cmake. 
+```
+    The binaries are generated in slsDetectorPackage/build/bin directory.
 
-Usage: [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [-h] [-d <HDF5 directory>] [-j] <Number of threads>
+    Usage: ./cmk.sh [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [m] [n] [-h] [z] [-d <HDF5 directory>] [-l Install directory] [-k <CMake command>] [-j <Number of threads>]
- -[no option]: only make
+    -[no option]: only make
- -c: Clean
+    -c: Clean
- -b: Builds/Rebuilds CMake files normal mode
+    -b: Builds/Rebuilds CMake files normal mode
- -p: Builds/Rebuilds Python API
+    -p: Builds/Rebuilds Python API
- -h: Builds/Rebuilds Cmake files with HDF5 package
+    -h: Builds/Rebuilds Cmake files with HDF5 package
- -d: HDF5 Custom Directory
+    -d: HDF5 Custom Directory
- -t: Build/Rebuilds only text client
+    -k: CMake command
- -r: Build/Rebuilds only receiver
+    -l: Install directory
- -g: Build/Rebuilds only gui
+    -t: Build/Rebuilds only text client
- -s: Simulator
+    -r: Build/Rebuilds only receiver
- -u: Chip Test Gui
+    -g: Build/Rebuilds only gui
- -j: Number of threads to compile through
+    -s: Simulator
- -e: Debug mode
+    -u: Chip Test Gui
- -i: Builds tests
+    -j: Number of threads to compile through
-  
+    -e: Debug mode
-eg. Rebuild when you switch to a new build and compile in parallel:
+    -i: Builds tests
-./cmk.sh -bj5
+    -m: Manuals
+    -n: Manuals without compiling doxygen (only rst)
+    -z: Moench zmq processor
 
+    
+    # get all options
+    ./cmk.sh -?
+
+    # new build  and compile in parallel:
+    ./cmk.sh -bj5
+```
+ 
 **2. Compile without script**<br>
 Use cmake to create out-of-source builds, by creating a build folder parallel to source directory. This would create a debug build with address sanitizers.
 ```
@@ -66,3 +86,17 @@ Use cmake to create out-of-source builds, by creating a build folder parallel to
     $ cmake ../slsDetectorPackage  -DCMAKE_BUILD_TYPE=Debug -DSLS_USE_SANITIZER=ON
     $ make -j12 #or whatever number of threads wanted
 ```
+
+To install binaries using CMake
+```
+    git clone --recursive https://github.com/slsdetectorgroup/slsDetectorPackage.git
+    mkdir build && cd build
+    cmake ../slsDetectorPackage -DCMAKE_INSTALL_PREFIX=/your/install/path
+    make -j12 #or whatever number of cores you are using to build
+    make install
+```
+
+
+### Support
+    dhanya.thattil@psi.ch
+    erik.frojdh@psi.ch

RELEASE.txt

@@ -1,2 +1,187 @@
-Draft
+SLS Detector Package Minor Release 6.1.0 released on 25.11.2021
-- dr 4, 8, 16 in eiger -> speed 0, 32 stays same (speed 1)
+===============================================================
+
+This document describes the differences between v6.1.0 and v6.0.0.   
+
+
+
+    CONTENTS
+    --------
+    1.  New or Changed Features
+    2.  Resolved Issues
+    3.  Firmware Requirements
+    4.  Kernel Requirements
+    5.  Download, Documentation & Support
+
+
+
+
+1. New or Changed Features
+==========================
+
+- Fixed minor warnings (will fix commandline print of excess packets for missing packets)
+- ctb slow adcs and any other adcs (other than temp) goes to the control Server
+- number of udp interfaces is 2 for Eiger (CHANGE IN API??)
+- added module id for virtual servers into the udp header
+- refactoring (rxr)
+- fixed patsetbit and patsetmask for moench
+- changed default vref of adc9257 to 2V for moench (from 1.33V)
+- moench and ctb - can set the starting frame number of next acquisition
+- mythen server kernel check incompatible (cet timezone)
+- m3 server crash (vthrehsold)
+- allow vtrim to be interpolated for Eiger settings
+
+
+
+2. Resolved Issues
+==================
+
+
+3. Firmware Requirements
+========================
+        
+    Eiger
+    =====  
+    Compatible version : 08.10.2021 (v29)
+    
+    Jungfrau
+    ========       
+    Compatible version : 31.08.2021 (v1.2, PCB v1.0) 
+                       : 08.10.2021 (v2.2, PCB v2.0)
+
+    Gotthard
+    ========   
+    Compatible version : 08.02.2018 (50um and 25um Master)
+                       : 09.02.2018 (25 um Slave) 
+
+    Mythen3
+    =======
+    Compatible version : 10.09.2021 (v1.1)
+
+    Gotthard2
+    =========
+    Compatible version : 27.05.2021 (v0.1)
+
+    Moench
+    ======
+    Compatible version : 05.10.2020 (v1.0)
+
+    Ctb
+    ===
+    Compatible version : 05.10.2020 (v1.0)
+
+    Detector Upgrade
+    ================
+    The following can be upgraded remotely:
+    Eiger      via bit files
+    Jungfrau   via command <.pof>
+    Mythen3    via command <.rbf>
+    Gotthard2  via command <.rbf> 
+    Moench     via command <.pof>
+    Ctb        via command <.pof>
+
+    The following cannot be upgraded remotely:
+    Gotthard   
+
+    Instructions available at
+        https://slsdetectorgroup.github.io/devdoc/firmware.html
+    and
+        https://slsdetectorgroup.github.io/devdoc/serverupgrade.html
+
+
+
+4. Kernel Requirements
+======================
+
+    Blackfin 
+    ========
+    Latest version: Fri Oct 29 00:00:00 2021
+    
+    Older ones will work, but might have issues with programming firmware via
+    the package.
+
+    Nios
+    ====
+    Compatible version: Mon May 10 18:00:21 CEST 2021
+
+    Kernel Upgrade
+    ==============
+    Eiger   via bit files
+    Others  via command
+
+    Commands: udpatekernel, kernelversion
+    Instructions available at
+        https://slsdetectorgroup.github.io/devdoc/commandline.html
+        https://slsdetectorgroup.github.io/devdoc/detector.html
+        https://slsdetectorgroup.github.io/devdoc/pydetector.html
+
+
+
+5. Download, Documentation & Support
+====================================
+
+    Download
+    --------
+    
+    The Source Code:
+         https://github.com/slsdetectorgroup/slsDetectorPackage
+            
+    Documentation
+    -------------
+    
+    Installation:
+        https://slsdetectorgroup.github.io/devdoc/installation.html#
+        
+    Firmware Upgrade:
+        https://slsdetectorgroup.github.io/devdoc/firmware.html
+
+    Detector Server upgrade:
+        https://slsdetectorgroup.github.io/devdoc/serverupgrade.html
+
+    Detector Simulators:
+        https://slsdetectorgroup.github.io/devdoc/virtualserver.html
+
+    Consuming slsDetectorPackage:
+        https://slsdetectorgroup.github.io/devdoc/consuming.html
+        
+    API Examples:
+        https://github.com/slsdetectorgroup/api-examples
+
+    Command Line Documentation:
+        https://slsdetectorgroup.github.io/devdoc/commandline.html
+
+    Quick Start Guide:
+        https://slsdetectorgroup.github.io/devdoc/quick_start_guide.html
+        
+    C++ API Documentation:
+        https://slsdetectorgroup.github.io/devdoc/detector.html
+       
+    C++ API Example:
+        https://slsdetectorgroup.github.io/devdoc/examples.html#
+        
+    Python API Documentation:
+        https://slsdetectorgroup.github.io/devdoc/pygettingstarted.html
+
+    Python API Example:
+        https://slsdetectorgroup.github.io/devdoc/pyexamples.html
+
+    Receivers (including custom receiver):
+        https://slsdetectorgroup.github.io/devdoc/receivers.html
+        https://slsdetectorgroup.github.io/devdoc/slsreceiver.html
+
+    TroubleShooting:
+        https://slsdetectorgroup.github.io/devdoc/troubleshooting.html
+        
+    Further Documentation:
+        https://www.psi.ch/en/detectors/documentation
+        
+    Info on Releases:
+        https://www.psi.ch/en/detectors/software
+
+
+    Support
+    -------
+
+        dhanya.thattil@psi.ch
+        erik.frojdh@psi.ch
+

cmake/FindZeroMQ.cmake

@@ -1,112 +0,0 @@
-
-# This file is originally from https://github.com/zeromq/azmq and distributed 
-# under Boost Software Lincese 1.0
-# Boost Software License - Version 1.0 - August 17th, 2003
-
-# Permission is hereby granted, free of charge, to any person or organization
-# obtaining a copy of the software and accompanying documentation covered by
-# this license (the "Software") to use, reproduce, display, distribute,
-# execute, and transmit the Software, and to prepare derivative works of the
-# Software, and to permit third-parties to whom the Software is furnished to
-# do so, all subject to the following:
-
-# The copyright notices in the Software and this entire statement, including
-# the above license grant, this restriction and the following disclaimer,
-# must be included in all copies of the Software, in whole or in part, and
-# all derivative works of the Software, unless such copies or derivative
-# works are solely in the form of machine-executable object code generated by
-# a source language processor.
-
-# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-# FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT
-# SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE
-# FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,
-# ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
-# DEALINGS IN THE SOFTWARE.
-# --------------------------------------------------------------------------------
-
-# Find ZeroMQ Headers/Libs
-
-# Variables
-# ZMQ_ROOT - set this to a location where ZeroMQ may be found
-#
-# ZeroMQ_FOUND - True of ZeroMQ found
-# ZeroMQ_INCLUDE_DIRS - Location of ZeroMQ includes
-# ZeroMQ_LIBRARIES - ZeroMQ libraries
-
-include(FindPackageHandleStandardArgs)
-
-if (NOT ZMQ_ROOT)
-    set(ZMQ_ROOT "$ENV{ZMQ_ROOT}")
-endif()
-
-if (NOT ZMQ_ROOT)
-    find_path(_ZeroMQ_ROOT NAMES include/zmq.h)
-else()
-    set(_ZeroMQ_ROOT "${ZMQ_ROOT}")
-endif()
-
-find_path(ZeroMQ_INCLUDE_DIRS NAMES zmq.h HINTS ${_ZeroMQ_ROOT}/include)
-
-if (ZeroMQ_INCLUDE_DIRS)
-    set(_ZeroMQ_H ${ZeroMQ_INCLUDE_DIRS}/zmq.h)
-
-    function(_zmqver_EXTRACT _ZeroMQ_VER_COMPONENT _ZeroMQ_VER_OUTPUT)
-        set(CMAKE_MATCH_1 "0")
-        set(_ZeroMQ_expr "^[ \\t]*#define[ \\t]+${_ZeroMQ_VER_COMPONENT}[ \\t]+([0-9]+)$")
-        file(STRINGS "${_ZeroMQ_H}" _ZeroMQ_ver REGEX "${_ZeroMQ_expr}")
-        string(REGEX MATCH "${_ZeroMQ_expr}" ZeroMQ_ver "${_ZeroMQ_ver}")
-        set(${_ZeroMQ_VER_OUTPUT} "${CMAKE_MATCH_1}" PARENT_SCOPE)
-    endfunction()
-
-    _zmqver_EXTRACT("ZMQ_VERSION_MAJOR" ZeroMQ_VERSION_MAJOR)
-    _zmqver_EXTRACT("ZMQ_VERSION_MINOR" ZeroMQ_VERSION_MINOR)
-    _zmqver_EXTRACT("ZMQ_VERSION_PATCH" ZeroMQ_VERSION_PATCH)
-
-    message(STATUS "ZeroMQ version: ${ZeroMQ_VERSION_MAJOR}.${ZeroMQ_VERSION_MINOR}.${ZeroMQ_VERSION_PATCH}")
-
-    # We should provide version to find_package_handle_standard_args in the same format as it was requested,
-    # otherwise it can't check whether version matches exactly.
-    if (ZeroMQ_FIND_VERSION_COUNT GREATER 2)
-        set(ZeroMQ_VERSION "${ZeroMQ_VERSION_MAJOR}.${ZeroMQ_VERSION_MINOR}.${ZeroMQ_VERSION_PATCH}")
-    else()
-        # User has requested ZeroMQ version without patch part => user is not interested in specific patch =>
-        # any patch should be an exact match.
-        set(ZeroMQ_VERSION "${ZeroMQ_VERSION_MAJOR}.${ZeroMQ_VERSION_MINOR}")
-    endif()
-
-    if (NOT ${CMAKE_CXX_PLATFORM_ID} STREQUAL "Windows")
-        find_library(ZeroMQ_LIBRARIES NAMES zmq HINTS ${_ZeroMQ_ROOT}/lib)
-    else()
-        find_library(
-            ZeroMQ_LIBRARY_RELEASE
-            NAMES
-                libzmq
-                "libzmq-${CMAKE_VS_PLATFORM_TOOLSET}-mt-${ZeroMQ_VERSION_MAJOR}_${ZeroMQ_VERSION_MINOR}_${ZeroMQ_VERSION_PATCH}"
-            HINTS
-                ${_ZeroMQ_ROOT}/lib
-            )
-
-        find_library(
-            ZeroMQ_LIBRARY_DEBUG
-            NAMES
-                libzmq_d
-                "libzmq-${CMAKE_VS_PLATFORM_TOOLSET}-mt-gd-${ZeroMQ_VERSION_MAJOR}_${ZeroMQ_VERSION_MINOR}_${ZeroMQ_VERSION_PATCH}"
-            HINTS
-                ${_ZeroMQ_ROOT}/lib)
-
-        # On Windows we have to use corresponding version (i.e. Release or Debug) of ZeroMQ because of `errno` CRT global variable
-        # See more at http://www.drdobbs.com/avoiding-the-visual-c-runtime-library/184416623
-        set(ZeroMQ_LIBRARIES optimized "${ZeroMQ_LIBRARY_RELEASE}" debug "${ZeroMQ_LIBRARY_DEBUG}")
-    endif()
-endif()
-
-find_package_handle_standard_args(ZeroMQ FOUND_VAR ZeroMQ_FOUND
-    REQUIRED_VARS ZeroMQ_INCLUDE_DIRS ZeroMQ_LIBRARIES
-    VERSION_VAR ZeroMQ_VERSION)
-
-if (ZeroMQ_FOUND)
-    mark_as_advanced(ZeroMQ_INCLUDE_DIRS ZeroMQ_LIBRARIES ZeroMQ_VERSION
-        ZeroMQ_VERSION_MAJOR ZeroMQ_VERSION_MINOR ZeroMQ_VERSION_PATCH)
-endif()

cmake/SlsAddFlag.cmake

@@ -0,0 +1,64 @@
+include(CheckCXXCompilerFlag)
+include(CheckCCompilerFlag)
+
+
+function(enable_cxx_warning flag target)
+    string(REPLACE "-W" "HAS_" flag_name ${flag})
+    check_cxx_compiler_flag(${flag} ${flag_name})
+    if(${flag_name})
+        target_compile_options(${target} INTERFACE ${flag})
+        message(STATUS "Adding: ${flag} to ${target}")
+    else()
+        message(STATUS "Flag: ${flag} not supported")
+    endif()
+endfunction()
+
+function(enable_c_warning flag target)
+    string(REPLACE "-W" "HAS_" flag_name ${flag})
+    check_c_compiler_flag(${flag} ${flag_name})
+    if(${flag_name})
+        target_compile_options(${target} INTERFACE ${flag})
+        message(STATUS "Adding: ${flag} to ${target}")
+    else()
+        message(STATUS "Flag: ${flag} not supported")
+    endif()
+endfunction()
+
+
+function(disable_cxx_warning flag target)
+    string(REPLACE "-W" "HAS_" flag_name ${flag})
+    check_cxx_compiler_flag(${flag} ${flag_name})
+
+    if(${flag_name})
+        string(REPLACE "-W" "-Wno-" neg_flag ${flag})
+        message(STATUS "Adding: ${neg_flag} to ${target}")
+        target_compile_options(${target} INTERFACE ${neg_flag})
+    else()
+        message(STATUS "Warning: ${flag} not supported no need to disable")
+    endif()
+endfunction()
+
+function(disable_c_warning flag target)
+    string(REPLACE "-W" "HAS_" flag_name ${flag})
+    check_c_compiler_flag(${flag} ${flag_name})
+    if(${flag_name})
+        string(REPLACE "-W" "-Wno-" neg_flag ${flag})
+        message(STATUS "Adding: ${neg_flag} to ${target}")
+        target_compile_options(${target} INTERFACE ${neg_flag})
+    else()
+        message(STATUS "Warning: ${flag} not supported no need to disable")
+    endif()
+endfunction()
+
+
+function(sls_disable_c_warning flag)
+    disable_c_warning(${flag} slsProjectCSettings)
+endfunction()
+
+function(sls_enable_cxx_warning flag)
+    enable_cxx_warning(${flag} slsProjectWarnings)
+endfunction()
+
+function(sls_disable_cxx_warning flag)
+    disable_cxx_warning(${flag} slsProjectWarnings)
+endfunction()

cmake/package_config.cmake

@@ -25,6 +25,12 @@ install(FILES
   DESTINATION ${CMAKE_INSTALL_DIR}
 )
 
+install(FILES
+  "${CMAKE_SOURCE_DIR}/libzmq-pkg-config/FindZeroMQ.cmake"
+  COMPONENT devel
+  DESTINATION ${CMAKE_INSTALL_DIR}/libzmq-pkg-config
+)
+
 if (PROJECT_LIBRARIES OR PROJECT_STATIC_LIBRARIES)
   install(
     EXPORT "${TARGETS_EXPORT_NAME}"

cmake/project-config.cmake.in

@@ -12,8 +12,21 @@ include(CMakeFindDependencyMacro)
 
 set(SLS_USE_HDF5 "@SLS_USE_HDF5@")
 
-# Add optional dependencies here
+
+find_package(ZeroMQ 4 QUIET)
+# libzmq autotools install: fallback to pkg-config
+if(NOT ZeroMQ_FOUND)
+    list (APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_LIST_DIR}/libzmq-pkg-config)
+    find_package(ZeroMQ 4 REQUIRED)
+endif()
+
+if(NOT ZeroMQ_FOUND)
+    message(FATAL_ERROR "ZeroMQ was NOT found!")
+endif()
+
 find_dependency(Threads)
+
+# Add optional dependencies here
 if (SLS_USE_HDF5)
     find_dependency(HDF5)
 endif ()

cmk.sh

@@ -1,5 +1,9 @@
 #!/bin/bash
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
+CMAKE="cmake3"
 BUILDDIR="build"
+INSTALLDIR=""
 HDF5DIR="/opt/hdf5v1.10.0"
 HDF5=0
 COMPILERTHREADS=0
@@ -22,13 +26,15 @@ CMAKE_PRE=""
 CMAKE_POST=""
 
 usage() { echo -e "
-Usage: $0 [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [m] [n] [-h] [z] [-d <HDF5 directory>] [-j] <Number of threads>
+Usage: $0 [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [m] [n] [-h] [z] [-d <HDF5 directory>] [-l Install directory] [-k <CMake command>] [-j <Number of threads>]
  -[no option]: only make
  -c: Clean
  -b: Builds/Rebuilds CMake files normal mode
  -p: Builds/Rebuilds Python API
  -h: Builds/Rebuilds Cmake files with HDF5 package
  -d: HDF5 Custom Directory
+ -k: CMake command
+ -l: Install directory
  -t: Build/Rebuilds only text client
  -r: Build/Rebuilds only receiver
  -g: Build/Rebuilds only gui
@@ -75,7 +81,7 @@ For rebuilding only certain sections
  
  " ; exit 1; }
 
-while getopts ":bpchd:j:trgeisumnz" opt ; do
+while getopts ":bpchd:k:l:j:trgeisumnz" opt ; do
 	case $opt in
 	b) 
 		echo "Building of CMake files Required"
@@ -99,6 +105,14 @@ while getopts ":bpchd:j:trgeisumnz" opt ; do
 		echo "New HDF5 directory: $OPTARG" 
 		HDF5DIR=$OPTARG
 		;;
+	l)
+		echo "CMake install directory: $OPTARG"
+		INSTALLDIR="$OPTARG"
+		;;
+	k)
+		echo "CMake command: $OPTARG"
+		CMAKE="$OPTARG"
+		;;
 	j) 
 		echo "Number of compiler threads: $OPTARG" 
 		COMPILERTHREADS=$OPTARG
@@ -252,7 +266,15 @@ else
 fi
 
 
+#install
+if [ -n "$INSTALLDIR" ]; then
+	CMAKE_POST+=" -DCMAKE_INSTALL_PREFIX=$INSTALLDIR"
+	CMAKE_POST+=" -DCMAKE_FIND_ROOT_PATH=$INSTALLDIR"
+fi
+
+
 #enter build dir
+#pushd $BUILDDIR;
 cd $BUILDDIR;
 echo "in "$PWD
 
@@ -261,7 +283,7 @@ echo "in "$PWD
 #cmake
 if [ $REBUILD -eq 1 ]; then
 	rm -f CMakeCache.txt
-	BUILDCOMMAND="$CMAKE_PRE cmake3 $CMAKE_POST .."
+	BUILDCOMMAND="$CMAKE_PRE $CMAKE $CMAKE_POST .."
 	echo $BUILDCOMMAND
 	eval $BUILDCOMMAND
 fi
@@ -305,6 +327,13 @@ else
 fi
 
 
+#install
+if [ -n "$INSTALLDIR" ]; then
+	make install
+#	popd
+#	$CMAKE --build $BUILDDIR --target install
+fi
+
 
 
 

conda-recepie/build.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 mkdir build
 mkdir install
@@ -8,13 +10,15 @@ cmake .. \
       -DSLS_USE_TEXTCLIENT=ON \
       -DSLS_USE_RECEIVER=ON \
       -DSLS_USE_GUI=ON \
+      -DSLS_USE_MOENCH=ON\
       -DSLS_USE_TESTS=ON \
       -DSLS_USE_PYTHON=OFF \
       -DCMAKE_BUILD_TYPE=Release \
       -DSLS_USE_HDF5=OFF\
      
-
+NCORES=$(getconf _NPROCESSORS_ONLN)
-cmake --build . -- -j10
+echo "Building using: ${NCORES} cores"
+cmake --build . -- -j${NCORES}
 cmake --build . --target install
 
-CTEST_OUTPUT_ON_FAILURE=1 ctest -j 2
+CTEST_OUTPUT_ON_FAILURE=1 ctest -j 2

conda-recepie/build_pylib.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 echo "|<-------- starting python build"
 cd python

conda-recepie/conda_build_config.yaml

@@ -2,6 +2,8 @@ python:
     - 3.6
     - 3.7
     - 3.8
+    - 3.9
+    - 3.10
     
 numpy: 
-    - 1.17
+    - 1.17

conda-recepie/copy_ctbgui.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 mkdir $PREFIX/lib
 mkdir $PREFIX/bin
 mkdir $PREFIX/include

conda-recepie/copy_gui.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 #Copy the GUI 
-mkdir $PREFIX/bin
+mkdir -p $PREFIX/bin
-cp build/bin/slsDetectorGui $PREFIX/bin/.
+cp build/install/bin/slsDetectorGui $PREFIX/bin/.

conda-recepie/copy_lib.sh

@@ -1,14 +1,12 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
-mkdir $PREFIX/lib
+mkdir -p $PREFIX/lib
-mkdir $PREFIX/bin
+mkdir -p $PREFIX/bin
-mkdir $PREFIX/include
+mkdir -p $PREFIX/include/sls
-mkdir $PREFIX/include/slsDetectorPackage
+# mkdir $PREFIX/include/slsDetectorPackage
 
 #Shared and static libraries
-# cp build/bin/libSlsDetector.so $PREFIX/lib/.
-# cp build/bin/libSlsReceiver.so $PREFIX/lib/.
-# cp build/bin/libSlsSupport.so $PREFIX/lib/.
-
 cp build/install/lib/* $PREFIX/lib/
 
 #Binaries
@@ -20,5 +18,5 @@ cp build/install/bin/slsReceiver $PREFIX/bin/.
 cp build/install/bin/slsMultiReceiver $PREFIX/bin/.
 
 
-cp build/install/include/* $PREFIX/include/
+cp build/install/include/sls/* $PREFIX/include/sls
 cp -r build/install/share/ $PREFIX/share

conda-recepie/copy_moench.sh

@@ -0,0 +1,6 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
+#Copy the Moench executables 
+mkdir -p $PREFIX/bin
+cp build/install/bin/moench04ZmqProcess $PREFIX/bin/.
+cp build/install/bin/moenchZmqProcess $PREFIX/bin/.

conda-recepie/meta.yaml

@@ -59,6 +59,16 @@ outputs:
     script: copy_lib.sh
 
     requirements:
+      build:
+        - {{ compiler('c') }}
+        - {{compiler('cxx')}}
+        - libstdcxx-ng
+        - libgcc-ng
+        - zeromq
+
+      host:
+        - zeromq
+
       run: 
         - libstdcxx-ng
         - libgcc-ng
@@ -78,6 +88,8 @@ outputs:
 
       host:
         - python
+        - {{ pin_subpackage('slsdetlib', exact=True) }}
+
 
       run:
         - libstdcxx-ng
@@ -94,8 +106,29 @@ outputs:
   - name: slsdetgui
     script: copy_gui.sh
     requirements:
+
+      build:
+        - {{ compiler('c') }}
+        - {{compiler('cxx')}}
+        - {{ pin_subpackage('slsdetlib', exact=True) }}
+        - qwt 6.*
+
       run:
         - {{ pin_subpackage('slsdetlib', exact=True) }}
         - qwt 6.*
         - qt 4.8.*
         - expat
+
+  - name: moenchzmq
+    script: copy_moench.sh
+    requirements:
+
+      build:
+        - {{ compiler('c') }}
+        - {{compiler('cxx')}}
+        - {{ pin_subpackage('slsdetlib', exact=True) }}
+
+
+      run:
+        - {{ pin_subpackage('slsdetlib', exact=True) }}
+        - expat

conda-recepie/run_test.sh

@@ -1 +1,3 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 ctest -j2

ctbGui/CMakeLists.txt

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 find_package(ROOT CONFIG REQUIRED  COMPONENTS Core Gui)
@@ -59,7 +61,6 @@ set( HEADERS
 #set(ROOT_INCLUDE_PATH ${CMAKE_CURRENT_SOURCE_DIR})
 
 # ROOT dictionary generation 
-include("${ROOT_DIR}/RootMacros.cmake")
 root_generate_dictionary(ctbDict ${HEADERS} LINKDEF ctbLinkDef.h)
 add_library(ctbRootLib SHARED ctbDict.cxx)
 target_include_directories(ctbRootLib PUBLIC ${CMAKE_CURRENT_SOURCE_DIR})
@@ -84,4 +85,5 @@ target_link_libraries(ctbGui PUBLIC
 set_target_properties(ctbGui PROPERTIES
     RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
 
-)
+)
+

ctbGui/Makefile.root5

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 INCS=ctbMain.h ctbDacs.h   ctbPattern.h  ctbSignals.h  ctbAdcs.h ctbAcquisition.h ctbPowers.h   ctbSlowAdcs.h 

ctbGui/Makefile.root6

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 INCS=ctbMain.h ctbDacs.h   ctbPattern.h  ctbSignals.h  ctbAdcs.h ctbAcquisition.h ctbPowers.h   ctbSlowAdcs.h  

ctbGui/ctbAcquisition.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 //#define TESTADC
 
 
@@ -16,6 +18,7 @@
 #include <TColor.h>
 #include <TTimer.h>
 #include <TH2F.h>
+#include <TSystem.h>
 
 
 #include <stdio.h>
@@ -25,8 +28,8 @@
 
 #include "ctbAcquisition.h"
 #include "ctbDefs.h"
-#include "Detector.h"
+#include "sls/Detector.h"
-#include "sls_detector_defs.h"
+#include "sls/sls_detector_defs.h"
 #include "ctbMain.h"
 #include "moench03CtbData.h" 
 //#include "moench03TCtbData.h" 
@@ -43,7 +46,7 @@
 #include "moench04CtbZmqData.h"
 #include "moench04CtbZmq10GbData.h"
 #include "deserializer.h"
-#include "detectorData.h"
+#include "sls/detectorData.h"
 #include "imageZmq16bit.h"
 #include "imageZmq32bit.h"
 

ctbGui/ctbAcquisition.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef CTBACQUISITION_H
 #define CTBACQUISITION_H
 #include  <TGFrame.h>

ctbGui/ctbAdcs.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <TApplication.h>
 #include <TGClient.h>
 #include <TCanvas.h>
@@ -25,7 +27,7 @@
 
 #include "ctbAdcs.h"
 #include "ctbDefs.h"
-#include "Detector.h"
+#include "sls/Detector.h"
 
 using namespace std;
 

ctbGui/ctbAdcs.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 

ctbGui/ctbDacs.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 #include <stdio.h>
 #include <iostream>
@@ -10,8 +12,8 @@
 
 #include "ctbDacs.h"
 #include "ctbDefs.h"
-#include "Detector.h"
+#include "sls/Detector.h"
-#include "sls_detector_defs.h"
+#include "sls/sls_detector_defs.h"
 
 using namespace std;
 

ctbGui/ctbDacs.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 #ifndef CTBDACS_H

ctbGui/ctbDefs.h

@@ -1,11 +1,13 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #pragma once
 
 #include <string>
 #include <stdexcept>
 #include <chrono>
 
-//#include "sls_detector_exceptions.h"
+//#include "sls/sls_detector_exceptions.h"
-//#include "ansi.h"
+//#include "sls/ansi.h"
 #define RED    	 	"\x1b[31m"
 #define RESET   	"\x1b[0m"
 #define BOLD    	"\x1b[1m"

ctbGui/ctbGui.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <TApplication.h>
 #include <TColor.h>
 
@@ -9,8 +11,8 @@
 #include <fstream>
 #include <string>
 
-#include "Detector.h"
+#include "sls/Detector.h"
-#include "sls_detector_defs.h"
+#include "sls/sls_detector_defs.h"
 //#include "sls_receiver_defs.h"
 #include "ctbMain.h"
 #include "ctbDefs.h"

ctbGui/ctbLinkDef.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #pragma link C++ class ctbMain;
 #pragma link C++ class ctbDacs;
 #pragma link C++ class ctbDac;

ctbGui/ctbMain.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <TApplication.h>
 #include <TGClient.h>
 #include <TCanvas.h>
@@ -34,7 +36,7 @@
 #include <fstream>
 #include <string>
 
-#include "Detector.h"
+#include "sls/Detector.h"
 #include "ctbDefs.h"
 #include "ctbMain.h"
 #include "ctbDacs.h"

ctbGui/ctbMain.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef CTBMAIN_H
 #define CTBMAIN_H
 #include <TGFrame.h>

ctbGui/ctbPattern.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <TApplication.h>
 #include <TGClient.h>
 #include <TCanvas.h>
@@ -25,7 +27,7 @@
 
 #include "ctbPattern.h"
 #include "ctbDefs.h"
-#include "Detector.h"
+#include "sls/Detector.h"
 #include <chrono>
 using namespace std;
 

ctbGui/ctbPattern.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef CTBPATTERN_H
 #define CTBPATTERN_H
 #include  <TGFrame.h>

ctbGui/ctbPowers.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include  <TGFrame.h>
 
 
@@ -13,8 +15,8 @@
 #include "ctbDefs.h"
 #include "ctbDacs.h"
 #include "ctbPowers.h"
-#include "Detector.h"
+#include "sls/Detector.h"
-#include "sls_detector_defs.h"
+#include "sls/sls_detector_defs.h"
 
 using namespace std;
 

ctbGui/ctbPowers.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef CTBPOWERS_H
 #define CTBPOWERS_H
 

ctbGui/ctbSignals.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <TApplication.h>
 #include <TGClient.h>
 #include <TCanvas.h>
@@ -35,7 +37,7 @@
 
 #include "ctbSignals.h"
 #include "ctbDefs.h"
-#include "Detector.h"
+#include "sls/Detector.h"
 
 using namespace std;
 

ctbGui/ctbSignals.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef CTBSIGNALS_H
 #define CTBSIGNALS_H
 #include  <TGFrame.h>

ctbGui/ctbSlowAdcs.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 #include <stdio.h>
 #include <iostream>
@@ -10,8 +12,8 @@
 
 #include "ctbSlowAdcs.h"
 #include "ctbDefs.h"
-#include "Detector.h"
+#include "sls/Detector.h"
-#include "sls_detector_defs.h"
+#include "sls/sls_detector_defs.h"
 
 using namespace std;
 

ctbGui/ctbSlowAdcs.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 #ifndef CTBSLOWADCS_H

ctbGui/patternGenerator/deserializer.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 #include <stdlib.h>  
 #include <stdint.h>  

ctbGui/patternGenerator/generate.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 if [ "$#" -eq 0 ]; then
     echo "Wrong number of arguments: usage should be $0 patname"
     exit 1
@@ -19,9 +21,10 @@ fi
 
 if [ -f "$infile" ]
 then
-gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c ; 
+dir=$(dirname $infile)
+gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c -I$dir; 
 echo compiling
-echo gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c ; 
+echo gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c  -I$dir; 
 $exe ; 
 echo cleaning
 rm $exe

ctbGui/patternGenerator/generator.c

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 /****************************************************************************
 usage to generate a patter test.pat from test.p
 
@@ -67,14 +69,14 @@ void setoutput(int bit) {
   mask=mask<<bit;
   iopat |= mask;
 }
-
+/*
 void setclk(int bit) {
   uint64_t mask=1;
   mask=mask<<bit;
   iopat |= mask;
   clkpat |= mask;
 }
-
+*/
 void clearbit(int bit){
   uint64_t mask=1;
   mask=mask<<bit;
@@ -155,7 +157,7 @@ main(void) {
 #include INFILE
 
   fprintf(fd,"patioctrl 0x%016llx\n",iopat);
-  fprintf(fd,"patclkctrl 0x%016llx\n",clkpat);
+  //fprintf(fd,"patclkctrl 0x%016llx\n",clkpat);
   fprintf(fd,"patlimits 0x%04x 0x%04x\n",start, stop);
 
   for (iloop=0; iloop<MAXLOOPS; iloop++) {

docs/CMakeLists.txt

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 find_package(Doxygen REQUIRED)
 find_package(Sphinx REQUIRED)
 
@@ -39,13 +41,20 @@ set(SPHINX_SOURCE_FILES
   src/pyenums.rst
   src/pyexamples.rst
   src/servers.rst
-  src/receiver.rst
+  src/receiver_api.rst
   src/result.rst
   src/type_traits.rst
   src/ToString.rst
   src/examples.rst
   src/pygettingstarted.rst
-  
+  src/firmware.rst
+  src/serverupgrade.rst
+  src/virtualserver.rst
+  src/serverdefaults.rst
+  src/quick_start_guide.rst
+  src/troubleshooting.rst
+  src/receivers.rst
+  src/slsreceiver.rst
 )
 
 foreach(filename ${SPHINX_SOURCE_FILES})

docs/src/commandline.rst

@@ -4,13 +4,44 @@ Command line interface
 Usage
 -------------
 
-Commands can be uses either with sls_detector_get or sls_detector_put
+Commands can be used either with sls_detector_get or sls_detector_put
 
 .. code-block::
 
     sls_detector_get vrf
 
+Help
+--------
+
+.. code-block::
+
+    # get list of commands
+    sls_detector_get list
+
+    # search for a particular command using a word
+    sls_detector_get list | grep adc
+
+    # get help for a particular command
+    sls_detector_get -h fpath
+    sls_detector_help fpath
+  
+
 Commands
 -----------
 
 .. include:: ../commands.rst
+
+
+Depreciated commands
+------------------------
+
+.. note ::
+	All the dac commands are preceded with the **dac** command. Use command **daclist** to get correct list of dac command arguments for current detector.
+
+.. csv-table:: Depreciated commands
+   :file: ../depreciated.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+
+

docs/src/consuming.rst

@@ -6,10 +6,10 @@ slsDetectorPackage there are a few different ways to
 consume our package. The recommended way is to use one of the 
 CMake approaches. 
 
-
+One can test with :ref:`detector simulators<Virtual Detector Servers>` before testing the API with a real detector or when a real detector is not at hand.
 
 CMake: slsDetectorPackage as submodule in your project
----------------------------------------
+---------------------------------------------------------------
 
 If you are using CMake to build your integration and want to build everything
 in one go, we support adding slsDetectorPackage as a subfolder in your cmake project. 
@@ -91,7 +91,7 @@ manually when invoking g++. This can sometimes be handy for a quick try.
 
 .. code-block:: cpp
 
-    #include "Detector.h"
+    #include "sls/Detector.h"
     #include <iostream>
     int main(){
 

docs/src/dependencies.rst

@@ -34,6 +34,12 @@ Python bindings
  * pybind11 (packaged in libs/)
 
 
+-----------------------
+Moench executables
+-----------------------
+
+ * libtiff
+
 -----------------------
 Documentation
 -----------------------

docs/src/examples.rst

@@ -36,7 +36,7 @@ Running a config file [e1]
 
 .. code-block:: cpp
 
-    #include "Detector.h"
+    #include "sls/Detector.h"
     ...
     sls::Detector det;
     det.loadConfig("path/to/config/file.config");
@@ -105,7 +105,7 @@ as converting to floating point.
 
 .. code-block:: cpp
 
-    #include "Detector.h"
+    #include "sls/Detector.h"
     #include <chrono>
     ...
     std::chrono::microseconds t0{500};

docs/src/firmware.rst

@@ -0,0 +1,359 @@
+Firmware Upgrade
+=================
+
+Eiger
+-------------
+
+Download 
+^^^^^^^^^^^^^
+- `bcp script <https://github.com/slsdetectorgroup/slsDetectorFirmware/blob/master/binaries/eiger/bcp>`__
+
+- detector server corresponding to package in slsDetectorPackage/serverBin
+
+- `bit files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
+
+Upgrade
+^^^^^^^^
+#. Tftp must be already installed on your pc to use the bcp script.
+
+#. Copy new servers to the board. See :ref:`how to upgrade detector servers<Detector Server Upgrade>` for more detals. A reboot should have started the new linked servers automatically. For Eiger, do not reboot yet as we need to program the firmware via bit files.
+
+    * This step is crucial when registers between firmwares change. Failure to do so will result in linux on boards to crash and boards can't be pinged anymore.
+
+#. Bring the board into programmable mode using either of the 2 ways. Both methods result in only the central LED blinking.
+    
+    * **Manual:**
+    
+        Do a hard reset for each half module on back panel boards, between the LEDs, closer to each of the 1G ethernet connectors. Push until all LEDs start to blink.
+    
+    * Software:  
+
+        .. code-block:: bash
+
+            # Option 1: if the old server is still running:
+            sls_detector_put execcommand "./boot_recovery"
+
+            # Option 2:
+            ssh root@bebxxx
+            cd executables
+            ./boot_recovery
+
+#. Start a terminal for each half module and run the following to see progress.
+
+    .. code-block:: bash
+    
+    	nc -p 3000 -u bebxxx 3000
+        # Press enter twice to see prompt with board name.
+        > bebxxx
+        # After each bcp command, wait for this terminal to print "Success".
+
+
+#. In another terminal, run the following to update firmware. Please update bit files with great caution as it could make your board inaccessible, if done incorrectly.
+
+    .. code-block:: bash
+    
+        #update back end fpga
+        bcp download.bit bebxxx:/fw0
+
+        #update front left fpga
+        bcp download.bit bebxxx:/febl
+
+        #update front right fpga
+        bcp download.bit bebxxx:/febr
+
+        #update kernel (only if required by us)
+        bcp download.bit bebxxx:/kernel
+
+#. Reboot the detector.
+
+    .. code-block:: bash
+
+        # In the first terminal where we saw "Succeess"
+        # reconfig febX is necessary only if you have flashed a new feb firmware
+        reconfig febl
+        reconfig febr
+        # will reboot controller
+        reconfig fw0
+
+.. note :: 
+
+    If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
+
+Jungfrau
+-------------
+
+Download 
+^^^^^^^^^^^^^
+- detector server corresponding to package in slsDetectorPackage/serverBin
+
+- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
+
+
+Upgrade
+^^^^^^^^
+
+.. note :: 
+
+    These instructions are for upgrades from v5.0.0. For earlier versions, contact us.
+
+
+Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
+
+Always ensure that the client and server software are of the same release.
+
+
+Program from console
+    .. code-block:: bash
+
+        # copies server from tftp folder of pc, links new server to jungfrauDetectorServer, 
+        # removes old server from respawn, sets up new lnked server to respawn
+        # programs fpga,
+        # reboots
+        sls_detector_put update jungfrauDetectorServervxxx pcxxx xx.pof
+
+        # Or only program firmware
+        sls_detector_put programfpga xxx.pof
+
+
+
+Gotthard I
+-----------
+
+Download 
+^^^^^^^^^^^^^
+- detector server corresponding to package in slsDetectorPackage/serverBin
+
+- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
+
+
+.. _firmware upgrade using blaster for blackfin:
+
+Upgrade
+^^^^^^^^
+.. warning ::
+    | Gotthard firmware cannot be upgraded remotely and requires the use of USB-Blaster.
+    | It is generally updated by us.
+
+#. Download `Altera Quartus software or Quartus programmer <https://fpgasoftware.intel.com/20.1/?edition=standard&platform=linux&product=qprogrammer#tabs-4>`__.
+   
+
+#. Start Quartus programmer, click on Hardware Setup. In the "Currently selected hardware" window, select USB-Blaster.
+
+#. In the Mode combo box, select "Active Serial Programming".
+
+#. Plug the end of your USB-Blaster with the adaptor provided to the connector 'AS config' on the Gotthard board.
+
+#. Click on 'Add file'. Select programming (pof) file provided by us.
+
+#. Check "Program/Configure" and "Verify". Push the start button. Wait until the programming process is finished.
+
+#. In case of error messages, check the polarity of cable (that pin1 corresponds) and that the correct programming connector is selected.
+
+#. Reboot the detector.
+
+
+Mythen III
+-----------
+
+.. note :: 
+
+  As it is still in development, the rbf files must be picked up from us.
+
+Download 
+^^^^^^^^^^^^^
+
+- detector server corresponding to package in slsDetectorPackage/serverBin
+
+- `rbf files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
+
+
+Upgrade
+^^^^^^^^
+
+Always ensure that the client and server software are of the same release.
+
+Program from console
+    .. code-block:: bash
+
+        # copies server from tftp folder of pc, links new server to mythen3DetectorServer, 
+        # programs fpga,
+        # reboots
+        sls_detector_put update mythen3DetectorServervxxx pcxxx xxx.rbf
+
+        # Or only program firmware
+        sls_detector_put programfpga xxx.rbf
+
+.. note :: 
+
+    If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
+
+Gotthard II
+-------------
+
+Download 
+^^^^^^^^^^^^^
+- detector server corresponding to package in slsDetectorPackage/serverBin
+
+- `rbf files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
+
+Upgrade
+^^^^^^^^
+
+Always ensure that the client and server software are of the same release.
+
+Program from console
+    .. code-block:: bash
+
+        # copies server from tftp folder of pc, links new server to gotthard2DetectorServer, 
+        # programs fpga,
+        # reboots
+        sls_detector_put update gotthard2DetectorServervxxx pcxxx xxx.rbf
+
+        # Or only program firmware
+        sls_detector_put programfpga xxx.rbf
+
+.. note :: 
+
+    If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
+
+Moench
+-------
+
+Download 
+^^^^^^^^^^^^^
+- detector server corresponding to package in slsDetectorPackage/serverBin
+
+- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
+
+
+
+Upgrade
+^^^^^^^^
+
+Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
+
+Always ensure that the client and server software are of the same release.
+
+Program from console
+    .. code-block:: bash
+
+        # copies server from tftp folder of pc, links new server to moenchDetectorServer, 
+        # removes old server from respawn, sets up new lnked server to respawn
+        # programs fpga,
+        # reboots
+        sls_detector_put update moenchDetectorServervxxx pcxxx xx.pof
+
+        # Or only program firmware
+        sls_detector_put programfpga xxx.pof
+
+Ctb
+----
+
+Download 
+^^^^^^^^^^^^^
+- detector server corresponding to package in slsDetectorPackage/serverBin
+
+- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
+
+
+
+Upgrade
+^^^^^^^^
+
+Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
+
+Always ensure that the client and server software are of the same release.
+
+Program from console
+    .. code-block:: bash
+
+        # copies server from tftp folder of pc, links new server to ctbDetectorServer, 
+        # removes old server from respawn, sets up new lnked server to respawn
+        # programs fpga,
+        # reboots
+        sls_detector_put update ctbDetectorServervxxx pcxxx xx.pof
+
+        # Or only program firmware
+        sls_detector_put programfpga xxx.pof
+
+
+.. _blackfin firmware troubleshooting:
+
+Firmware Troubleshooting with blackfin
+----------------------------------------
+
+1. v4.x.x client after programming will most likely reboot the blackfin processor, regardless of error.
+
+2. v5.x.x-rcx client after programming will not reboot the blackfin processor, if error occurred.
+
+3. If a reboot occured with an incomplete firmware in flash, the blackfin will most likely not find the mtd3 drive. To see if this drive exists:
+
+  .. code-block:: bash
+    
+    # connect to the board
+    telnet bchipxxx
+
+    # view of mtd3 existing
+    root:/> more /proc/mtd
+    dev:    size   erasesize  name
+    mtd0: 00040000 00020000 "bootloader(nor)"
+    mtd1: 00100000 00020000 "linux kernel(nor)"
+    mtd2: 002c0000 00020000 "file system(nor)"
+    mtd3: 01000000 00010000 "bitfile(spi)"
+
+4. If one can see the mtd3 drive, one can already try to flash again using the **programfpga** command (without rebooting blackfin or detector). 
+
+5. If one can't list it, read the next section to try to get the blackfin to list it.
+
+How to get back mtd3 drive remotely (udpating kernel)
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    You have 2 alternatives to update the kernel.
+
+    1. Commands via software (>= v6.0.0)
+
+        .. code-block:: bash
+
+            sls_detector_put updatekernel /home/...path-to-kernel-image
+
+
+    2. or command line 
+    
+        .. code-block:: bash
+            
+            # step 1: get the kernel image (uImage.lzma) from slsdetectorgroup
+            # and copy it to pc's tftp folder
+
+            # step 2: connect to the board
+            telnet bchipxxx
+
+            #step 3: go to directory for space
+            cd /var/tmp/
+
+            # step 3: copy kernel to board
+            tftp pcxxx -r uImage.lzma -g
+
+            # step 4: verify kernel copied properly
+            ls -lrt
+            
+            # step 5: erase flash
+            flash_eraseall /dev/mtd1
+            
+            # step 6: copy new image to kernel drive
+            cat uImage.lzma > /dev/mtd1
+            
+            # step 7:
+            sync
+            
+            # step 8:
+            reboot
+            
+            # step 9: verification
+            telnet bchipxxx
+            uname -a # verify kernel date
+            more /proc/mtd # verify mtd3 is listed
+            
+
+Last Resort using USB Blaster
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+If none of these steps work, the last resort might be physically upgrading the firmware using a USB blaster, which also requires opening up the detector. Instructions for all the blackfin detectors are the same as the one for :ref:`gotthard firmware upgrade <firmware upgrade using blaster for blackfin>`.

docs/src/gendoc.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 /**
  * Utility program to generate input files for the command line
  * documentation. Uses the string returned from sls_detector_help cmd
@@ -10,8 +12,8 @@
 #include <vector>
 
 #include "CmdProxy.h"
-#include "Detector.h"
+#include "sls/Detector.h"
-#include "sls_detector_defs.h"
+#include "sls/sls_detector_defs.h"
 
 std::string replace_all(const std::string &src, const std::string &from,
                         const std::string &to) {
@@ -51,4 +53,11 @@ int main() {
         auto help = replace_all(tmp, "\n\t", "\n\t\t| ");
         fs << '\t' << cmd << usage << help << "\n";
     }
+
+    std::ofstream fs2("depreciated.csv");
+    fs2 << "Old, New\n";
+    auto cmds = proxy.GetDepreciatedCommands();
+    for (auto it : cmds) {
+        fs2 << it.first << ", " << it.second << '\n';
+    }
 }

docs/src/index.rst

@@ -25,7 +25,7 @@ Welcome to slsDetectorPackage's documentation!
 
     detector
     result
-    receiver
+    receiver_api
     examples
 
 .. toctree::
@@ -42,6 +42,7 @@ Welcome to slsDetectorPackage's documentation!
     :maxdepth: 2
 
     commandline  
+    quick_start_guide
 
 .. toctree::
     :caption: Developer
@@ -51,9 +52,32 @@ Welcome to slsDetectorPackage's documentation!
     ToString
 
 .. toctree::
-    :caption: Servers
+    :caption: Firmware
+    :maxdepth: 2
+
+    firmware 
+
+.. toctree::
+    :caption: Detector Server
+    :maxdepth: 2
 
     servers
+    serverupgrade
+    virtualserver
+    serverdefaults
+
+.. toctree::
+    :caption: Receiver
+    :maxdepth: 2
+
+    receivers
+    slsreceiver
+
+.. toctree::
+    :caption: Troubleshooting
+
+    troubleshooting
+
 
 .. Indices and tables
 .. ==================

docs/src/installation.rst

@@ -16,10 +16,13 @@
     manage the dependencies.
     
 
+.. _Installation:
 
 Installation
 ==============================================
 
+.. _build from source using cmake:
+
 Build from source using CMake
 ---------------------------------
 
@@ -44,6 +47,42 @@ The easiest way to configure options is to use the ccmake utility.
     ccmake .
 
 
+Build using cmk.sh script
+-------------------------
+These are mainly aimed at those not familiar with using ccmake and cmake.
+
+.. code-block:: bash
+
+    The binaries are generated in slsDetectorPackage/build/bin directory.
+
+    Usage: $0 [-c] [-b] [-p] [e] [t] [r] [g] [s] [u] [i] [m] [n] [-h] [z] [-d <HDF5 directory>] [-l Install directory] [-k <CMake command>] [-j <Number of threads>]
+    -[no option]: only make
+    -c: Clean
+    -b: Builds/Rebuilds CMake files normal mode
+    -p: Builds/Rebuilds Python API
+    -h: Builds/Rebuilds Cmake files with HDF5 package
+    -d: HDF5 Custom Directory
+    -k: CMake command
+    -l: Install directory
+    -t: Build/Rebuilds only text client
+    -r: Build/Rebuilds only receiver
+    -g: Build/Rebuilds only gui
+    -s: Simulator
+    -u: Chip Test Gui
+    -j: Number of threads to compile through
+    -e: Debug mode
+    -i: Builds tests
+    -m: Manuals
+    -n: Manuals without compiling doxygen (only rst)
+    -z: Moench zmq processor
+    
+    # get all options
+    ./cmk.sh -?
+
+    # new build  and compile in parallel:
+    ./cmk.sh -bj5
+
+
 Install binaries using conda
 --------------------------------
 
@@ -65,6 +104,7 @@ We have three different packages available:
     conda config --set channel_priority strict
 
     #cerate an environment with our library, then activate
+    #replace 2020.07.20.dev0 with the required tag
     conda create -n myenv slsdetlib=2020.07.23.dev0
     conda activate myenv
 

docs/src/pyenums.rst

@@ -67,17 +67,23 @@ exposed to Python through pybind11.
 .. autoclass:: readoutMode
     :undoc-members:
 
-.. autoclass:: masterFlags
-    :undoc-members:
-
-.. autoclass:: frameModeType
-    :undoc-members:
-
-.. autoclass:: detectorModeType
-    :undoc-members:
-
 .. autoclass:: burstMode
     :undoc-members:
 
 .. autoclass:: timingSourceType
+    :undoc-members:
+
+.. autoclass:: M3_GainCaps
+    :undoc-members:    
+
+.. autoclass:: portPosition
+    :undoc-members:
+
+.. autoclass:: streamingInterface
+    :undoc-members:
+
+.. autoclass:: vetoAlgorithm
+    :undoc-members:
+
+.. autoclass:: gainMode
     :undoc-members:

docs/src/pygettingstarted.rst

@@ -217,9 +217,9 @@ The enums can be found in slsdet.enums
 
     import slsdet
     >>> [e for e in dir(slsdet.enums) if not e.startswith('_')]
-    ['burstMode', 'clockIndex', 'dacIndex', 'detectorModeType', 
+    ['burstMode', 'clockIndex', 'dacIndex', 
     'detectorSettings', 'detectorType', 'dimension', 'externalSignalFlag', 
-    'fileFormat', 'frameDiscardPolicy', 'frameModeType', 'masterFlags', 
+    'fileFormat', 'frameDiscardPolicy', 
     'readoutMode', 'runStatus', 'speedLevel', 'timingMode', 
     'timingSourceType']
 

docs/src/quick_start_guide.rst

@@ -0,0 +1,140 @@
+Quick Start Guide
+=================
+
+Detector
+--------
+Start up detector (with cooling if required). Ensure both control server and stop server is running on-board.
+
+Or use a detector simulator to test. Click :ref:`here<Virtual Detector Servers>` for further instructions.
+
+Receiver
+--------
+
+| One has to start the slsReceiver before loading config file or using any receiver commands (prefix: **rx_** )
+
+For a Single Module
+    .. code-block:: bash  
+
+        # default port 1954
+        slsReceiver
+
+        # custom port 2012
+        slsReceiver -t2012
+
+
+For Multiple Modules
+    .. code-block:: bash  
+
+        # slsMultiReceiver [starting port] [number of receivers] [print each frame header for debugging]
+        slsMultiReceiver 2012 2 0 
+
+
+Client
+------
+
+Refer :ref:`Sample Config file` to create config file.
+
+.. code-block:: bash  
+
+    # load config file
+    sls_detector_put config /path/sample.config
+
+    # set number of frames
+    sls_detector_put frames 5
+
+    # acquire
+    sls_detector_acquire
+
+
+.. _Sample Config file:
+
+Sample Config file
+^^^^^^^^^^^^^^^^^^
+There are sample config files for each detector in slsDetectorPackage/examples folder.
+
+For a Single Module
+    .. code-block:: bash  
+
+        # connects to module
+        hostname bchipxxx
+
+        # connects to receiver at default port
+        rx_hostname mpc1922
+        # or to connect to specific port
+        # rx_hostname mpc1922:2012
+
+        # sets destination udp ports (not needed, default is 50001)
+        udp_dstport 50012
+
+        # source udp ips must be same subnet at destintaion udp ips
+        udp_srcip 192.168.1.112
+
+        # destination udp ip picked up from rx_hostname (if auto)
+        udp_dstip auto
+
+        # set file path
+        fpath /tmp
+
+For a Single Module with custom Receiver (not slsReceiver)
+    .. code-block:: bash  
+
+        # connects to module
+        hostname bchipxxx
+
+        # sets destination udp ports (not needed, default is 50001)
+        udp_dstport 50012
+
+        # source udp ips must be same subnet at destintaion udp ips
+        udp_srcip 192.168.1.112
+
+        # destination udp ip 
+        udp_dstip 192.168.1.100
+
+        # source udp mac 
+        udp_srcmac aa:bb:cc:dd:ee:ff
+        
+        # destination udp mac 
+        udp_dstmac 3c:ab:98:bf:50:60
+
+        # set file path
+        fpath /tmp
+
+For Multiple Modules
+    .. code-block:: bash  
+
+        # connects to mulitple modules
+        hostname bchipxxx+bchipyyy+
+
+        # connects to receivers at ports 2012 and 2014
+        rx_hostname mpc1922:2012+mpc1922:2013+
+
+        # sets differernt destination udp ports
+        0:udp_dstport 50012
+        1:udp_dstport 50014
+
+        # source udp ips must be same subnet at destintaion udp ips
+        0:udp_srcip 192.168.1.112
+        1:udp_srcip 192.168.1.114
+
+        # destination udp ip picked up from rx_hostname (if auto)
+        udp_dstip auto
+
+        # set file path
+        fpath /tmp
+
+Gui
+----
+
+Compile with SLS_USE_GUI=ON in cmake or -g option in cmk.sh script. One can also just use the conda binary. Refer :ref:`installation instructions<Installation>`.
+
+.. code-block:: bash  
+
+    slsDetectorGui
+
+
+.. note ::
+    | The streaming high water mark (commmand: rx_zmqhwm) and the receiving high water mark (command: zmqhwm) is by default the lib zmq's default (currently 1000).
+    | At Gui startup, these values are set to 2. Hence, for very fast detectors, many frames will be dropped to be able to view the latest in the gui.
+    | One can still change this setting in the gui in the Plot tab (ZMQ Streaming), from the command line or API.
+    | Both hwm's can be set to a -1 to use the lib's default.
+    | Since the dummy end of acquisition packet streamed from receiver might also be lost, receiver restreams until gui acknowledges.

docs/src/receiver_api.rst

@@ -1,6 +1,6 @@
 Receiver
 ==============================================
 
-.. doxygenclass:: Receiver
+.. doxygenclass:: sls::Receiver
    :members:
 ..    :undoc-members:

docs/src/receivers.rst

@@ -0,0 +1,71 @@
+Receivers
+=================
+
+Receiver processes can be run on same or different machines as the client, receives the data from the detector (via UDP packets).
+When using the slsReceiver/ slsMultiReceiver, they can be further configured by the client control software (via TCP/IP) to set file name, file path, progress of acquisition etc.
+
+Detector UDP Header
+---------------------
+
+| The UDP data format for the packets consist of a common header for all detectors, followed by the data for that one packet.
+
+**The SLS Detector Header**
+
+.. table:: <-------------------------------- 8 bytes -------------------------------->
+    :align: center
+    :widths: 30,30,30,30
+
+    +--------------------------------------------------------------------+
+    |frameNumber                                                         |
+    +---------------------------------+----------------------------------+
+    |expLength                        |packetNumber                      |
+    +---------------------------------+----------------------------------+
+    |bunchId                                                             |
+    +--------------------------------------------------------------------+
+    |timestamp                                                           |
+    +----------------+----------------+----------------+-----------------+
+    |modId           |row             |column          |reserved         |
+    +----------------+----------------+----------------+--------+--------+
+    |debug                            |roundRNumber    |detType |version |
+    +---------------------------------+----------------+--------+--------+
+
+UDP configuration in Config file
+----------------------------------
+
+#. UDP source port is hardcoded in detector server, starting at 32410.
+#. **udp_dstport** : UDP destination port number. Port in receiver pc to listen to packets from the detector.
+#. **udp_dstip** : IP address of UDP destination interface. IP address of interface in receiver pc to listen to packets from detector. If **auto** is used (only when using slsReceiver/ slsMultiReceiver), the IP of **rx_hostname** is picked up.
+#. **udp_dstmac** : Mac address of UDP destination interface. MAC address of interface in receiver pc to list to packets from detector. Only required when using custom receiver, else slsReceiver/slsMultiReceiver picks it up from **udp_dstip**.
+#. **udp_srcip** : IP address of UDP source interface. IP address of detector UDP interface to send packets from. Do not use for Eiger 1Gb interface (uses its hardware IP). For others, must be in the same subnet as **udp_dstip**.
+#. **udp_srcmac** : MAC address of UDP source interface. MAC address of detector UDP interface to send packets from. Do not use for Eiger (uses hardware mac). For others, it is not necessary, but can help for switch and debugging to put unique values for each module.
+ 
+
+Custom Receiver
+----------------
+
+| When using  custom receiver with our package, ensure that **udp_dstmac** is also configured in the config file. This parameter is not required when using slsReceiver.
+
+| Cannot use "auto" for **udp_dstip**.
+
+| Also ensure that there are no **rx_** commands in the config file. These commands are for configuring the slsReceiver.
+
+Example of a custom receiver config file
+
+* The main difference is the lack of **rx_** commands or file commands (eg. fwrite, fpath) and the udp_dstmac is required in config file.
+
+.. code-block:: bash
+
+    # detector hostname
+    hostname bchip052
+
+    # udp destination port (receiver)
+    udp_dstport 50004
+
+    # udp destination ip (receiver)
+    udp_dstip 10.0.1.100
+
+    # udp source ip (same subnet as udp_dstip)
+    udp_srcip 10.0.1.184
+
+    # udp destination mac
+    udp_dstmac 22:47:d5:48:ad:ef

docs/src/serverdefaults.rst

@@ -0,0 +1,106 @@
+Default Values
+==============================================
+
+Mythen3
+-------------
+
+.. csv-table:: Default values
+   :file: mythen3.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+DACS
+^^^^^^^^^^^^^
+
+.. csv-table:: Mythen3 DACS
+   :file: mythen3-dacs.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+Gotthard2
+-------------
+
+.. csv-table:: Default values
+   :file: gotthard2.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+DACS
+^^^^^^^^^^^^^
+
+.. csv-table:: Gotthard 2 DACS
+   :file: gotthard2-dacs.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+Moench
+-------------
+
+.. csv-table:: Default values
+   :file: moench.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+DACS
+^^^^^^^^^^^^^
+
+.. csv-table:: Moench DACS
+   :file: moench-dacs.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+Ctb
+-------------
+
+.. csv-table:: Default values
+   :file: ctb.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+Eiger
+-------------
+
+.. csv-table:: Default values
+   :file: eiger.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+DACS
+^^^^^^^^^^^^^
+
+.. csv-table:: Eiger DACS
+   :file: eiger-dacs.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+Jungfrau
+-------------
+
+.. csv-table:: Default values
+   :file: jungfrau.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+DACS
+^^^^^^^^^^^^^
+
+.. csv-table:: Jungfrau DACS
+   :file: jungfrau-dacs.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+Gotthard
+-------------
+
+.. csv-table:: Default values
+   :file: gotthard.csv
+   :widths: 35, 35
+   :header-rows: 1
+
+DACS
+^^^^^^^^^^^^^
+
+.. csv-table:: Gotthard DACS
+   :file: gotthard-dacs.csv
+   :widths: 35, 35
+   :header-rows: 1

docs/src/servers.rst

@@ -1,108 +1,96 @@
-Default values
+Detector Servers
-==============================================
+=================
 
-Some general intro 
+Location
+---------
+   slsDetectorPackage/serverBin/ folder in every release.
 
-Mythen3
--------------
 
-.. csv-table:: Default values
+.. _Detector Server Arguments:
-   :file: mythen3.csv
-   :widths: 35, 35
-   :header-rows: 1
 
-DACS
+Arguments
-^^^^^^^^^^^^^
+---------
 
-.. csv-table:: Mythen3 DACS
+   .. code-block:: bash  
-   :file: mythen3-dacs.csv
-   :widths: 35, 35
-   :header-rows: 1
 
-Gotthard2
+      Possible arguments are:
--------------
+      -v, --version            : Software version
+      -p, --port <port>        : TCP communication port with client. 
+      -g, --nomodule           : [Mythen3][Gotthard2] Generic or No Module mode. 
+                                 Skips detector type checks.
+      -f, --phaseshift <value> : [Gotthard] only. Sets phase shift. 
+      -d, --devel              : Developer mode. Skips firmware checks. 
+      -u, --update             : Update mode. Skips firmware checks and initial detector setup. 
+      -s, --stopserver         : Stop server. Do not use as it is created by control server 
 
-.. csv-table:: Default values
-   :file: gotthard2.csv
-   :widths: 35, 35
-   :header-rows: 1
 
-DACS
+Basics
-^^^^^^^^^^^^^
+------------
 
-.. csv-table:: Gotthard 2 DACS
+Detector Servers include:
-   :file: gotthard2-dacs.csv
+   * Control server [default port: 1952]
-   :widths: 35, 35
+      * Almost all client communication.
-   :header-rows: 1
+   * Stop server [default port: 1953]
+      *  Client requests for detector status, stop acquisition, temperature, advanced read/write registers.
 
-Moench
+When using a blocking acquire command (sls_detector_acquire or Detector::acquire), the control server is blocked until end of acquisition. However, stop server commands could be used in parallel.
--------------
 
-.. csv-table:: Default values
-   :file: moench.csv
-   :widths: 35, 35
-   :header-rows: 1
 
-DACS
+.. _Automatic start servers:
-^^^^^^^^^^^^^
+Automatic start 
+------------------
 
-.. csv-table:: Moench DACS
+One can start the on-board detector server automatically upon powering on the board.
-   :file: moench-dacs.csv
-   :widths: 35, 35
-   :header-rows: 1
 
-Ctb
+#. Create a soft link to the binary on board 
--------------
+   :
+      .. code-block:: bash
+      
+         ln -sf someDetectorServervx.x.x someDetectorServer
 
-.. csv-table:: Default values
-   :file: ctb.csv
-   :widths: 35, 35
-   :header-rows: 1
 
-Eiger
--------------
 
-.. csv-table:: Default values
+#. Do the following depending on the detector type :
-   :file: eiger.csv
-   :widths: 35, 35
-   :header-rows: 1
 
-DACS
+   Eiger
-^^^^^^^^^^^^^
+      .. code-block:: bash
+         
+         # create script in rc5.d on the board
+         vi /etc/rc5.d/S50board_com.sh
 
-.. csv-table:: Eiger DACS
+         # enter the following (edit server name)
-   :file: eiger-dacs.csv
+         #! /bin/sh
-   :widths: 35, 35
+         /home/root/executables/eigerDetectorServer &> /dev/null &
-   :header-rows: 1
+         exit 0
 
-Jungfrau
+   Jungfrau | Moench | CTB | Gotthard I
--------------
+      .. code-block:: bash
 
-.. csv-table:: Default values
+         # Edit inittab on board
-   :file: jungfrau.csv
+         vi /etc/inittab
-   :widths: 35, 35
-   :header-rows: 1
 
-DACS
+         # enter the following line
-^^^^^^^^^^^^^
+         ttyS0::respawn:/./xxxDetectorServer
 
-.. csv-table:: Jungfrau DACS
-   :file: jungfrau-dacs.csv
-   :widths: 35, 35
-   :header-rows: 1
 
-Gotthard
+   Gotthard II | Mythen III
--------------
+      .. code-block:: bash
+         
+         # create script in init.d on board
+         vi /etc/init.d/S99detServer.sh
 
-.. csv-table:: Default values
+         # enter the following (edit server name)
-   :file: gotthard.csv
+         #! /bin/sh
-   :widths: 35, 35
+         cd /root >> /dev/null
-   :header-rows: 1
+         /root/xxxDetectorServer >> /dev/null &
 
-DACS
-^^^^^^^^^^^^^
 
-.. csv-table:: Gotthard DACS
+#. Sync, reboot and verify
-   :file: gotthard-dacs.csv
+   :
-   :widths: 35, 35
+      .. code-block:: bash
-   :header-rows: 1
+      
+         sync
+         reboot
+
+         # verify
+         ps -ef | grep xxxDetectorServer

docs/src/serverupgrade.rst

@@ -0,0 +1,44 @@
+.. _Detector Server Upgrade:
+Detector Server Upgrade
+=======================
+
+
+**Location:** slsDetectorPackage/serverBin/ folder for every release.
+
+
+#. Install tftp and copy detector server binary to tftp folder
+#. Program from console
+
+    .. note :: 
+
+        These instructions are for upgrades from v5.0.0. For earlier versions, contact us.
+
+    .. code-block:: bash
+
+        # copies new server from pc tftp folder, creates a soft link to xxxDetectorServerxxx
+        # [Jungfrau][CTB][Moench] also edits initttab to respawn server on reboot
+        # Then, the detector controller will reboot (except Eiger)
+        sls_detector_put copydetectorserver xxxDetectorServerxxx pcxxx
+
+#. Copy the detector server specific config files or any others required to the detector:
+
+   .. code-block:: bash
+
+        sls_detector_put execcommand "tftp pcxxx -r configxxx -g"
+
+
+.. note :: 
+
+    For Mythen3, Gotthard2 and Eiger, you need to add scripts to automatically start detector server upon power on. See :ref:`Automatic start<Automatic start servers>` for more details.
+
+ .. note :: 
+
+    Eiger requires a manual reboot. Or killall the servers and restart the new linked one. If you are in the process of updating firmware, then don't reboot yet.
+
+
+Errors
+------
+
+#. tftp write error: There is no space left. Please delete some old binaries and try again.
+
+#. text file busy: You are trying to copy the same server.

docs/src/slsreceiver.rst

@@ -0,0 +1,170 @@
+slsReceiver/ slsMultiReceiver
+================================
+
+| One has to start the slsReceiver before loading config file or using any receiver commands (prefix: **rx_** )
+
+For a Single Module
+    .. code-block:: bash  
+
+        # default port 1954
+        slsReceiver
+
+        # custom port 2012
+        slsReceiver -t2012
+
+
+For Multiple Modules
+    .. code-block:: bash  
+
+        # each receiver (for each module) requires a unique tcp port (if all on same machine)
+
+        # using slsReceiver in multiple consoles
+        slsReceiver
+        slsReceiver -t1955
+
+        # slsMultiReceiver [starting port] [number of receivers]
+        slsMultiReceiver 2012 2
+
+        # slsMultiReceiver [starting port] [number of receivers] [print each frame header for debugging]
+        slsMultiReceiver 2012 2 1
+
+
+Client Commands 
+-----------------
+
+| One can remove **udp_dstmac** from the config file, as the slsReceiver fetches this from the **udp_ip**.
+
+| One can use "auto" for **udp_dstip** if one wants to use default ip of **rx_hostname**.
+
+| The first command to the receiver (**rx_** commands) should be **rx_hostname**. The following are the different ways to establish contact.
+
+    .. code-block:: bash  
+
+        # default receiver tcp port (1954)
+        rx_hostname xxx
+
+        # custom receiver port
+        rx_hostname xxx:1957
+
+        # custom receiver port
+        rx_tcpport 1954
+        rx_hostname xxx
+
+        # multi modules with custom ports
+        rx_hostname xxx:1955+xxx:1956+
+
+        # multi modules with custom ports on same rxr pc
+        0:rx_tcpport 1954
+        1:rx_tcpport 1955
+        2:rx_tcpport 1956
+        rx_hostname xxx
+
+        # multi modules with custom ports on different rxr pc
+        0:rx_tcpport 1954
+        0:rx_hostname xxx
+        1:rx_tcpport 1955
+        1:rx_hostname yyy
+
+
+| Example commands:
+
+    .. code-block:: bash 
+
+        # to get a list of receiver commands (these dont include file commands)
+        sls_detector_get list | grep rx_
+
+        # some file commands are:
+        fwrite
+        foverwrite
+        findex
+        fpath
+        fname
+        fmaster
+        fformat
+
+        # to get help on a single commands
+        sls_detector_get -h rx_framescaught
+
+
+File format
+--------------
+
+* The file name format is [fpath]/[fname]_dx_fy_[findex].raw, where x is module index and y is file index. **fname** is file name prefix and by default "run". **fpath** is '/' by default.
+
+* Each acquisition will have an increasing acquisition index or findex (if file write enabled). This can be retrieved by using **findex** command. 
+
+* Each acquisition can have multiple files (the file index number **y**), with **rx_framesperfile** being the maximum number of frames per file. The default varies for each detector type.
+
+* Some file name examples:
+
+    .. code-block:: bash
+
+        # first file
+        path-to-file/run_d0_f0_0.raw
+
+        # second file after reaching max frames in first file
+        path-to-file/run_d0_f1_0.raw
+        
+        # second acquisition, first file
+        path-to-file/run_d0_f0_1.raw
+
+* Each acquisition will create a master file that can be enabled/disabled using **fmaster**. This should have parameters relevant to the acquisition.
+
+* SLS Receiver Header consist of SLS Detector Header + 64 bytes of bitmask, altogether 112 bytes. The packetNumber in the sls detector header part, will be updated to number of packets caught by receiver for that frame. Furthermore, the bit mask will specify which packets have been received.
+
+**Binary file format**
+
+* This is the default file format. 
+
+* Each data file will consist of frames, each consisting of slsReceiver Header followed by data for 1 frame.
+
+* Master file is of ASCII format and will also include the format of the slsReceiver Header.
+
+
+**HDF5 file formats**
+
+#. Compile the package with HDF5 option enabled
+
+    #. Using cmk script: ./cmk.sh -hj9 -d [path of hdf5 dir]
+
+    #. Enable using cmake **-DCMAKE_INSTALL_PREFIX=/path/to/hdf/installation** and **-DSLS_USE_HDF5=ON**
+
+#. Start Receiver process
+
+#. Load config file
+
+#. Set file format from client or in config file
+    .. code-block:: bash
+
+        sls_detector_put fformat hdf5
+
+
+| For multiple, modules, a virtual file linking all the modules is created. Both the data files and virtual files are linked in the master file.
+
+
+Performance 
+-------------
+
+Please refer to Receiver PC Tuning options and slsReceiver Tuning under `Troubleshooting <https://slsdetectorgroup.github.io/devdoc/troubleshooting.html>`_.
+
+
+Using Callbacks
+----------------
+
+One can get a callback in the receiver for each frame to:
+    * manipulate the data that will be written to file, or
+    * disable file writing in slsReceiver and take care of the data for each call back
+
+When handling callbacks, the control should be returned as soon as possible, to prevent packet loss from fifo being full.
+
+**Example**
+    * `main cpp file <https://github.com/slsdetectorgroup/api-examples/blob/master/e4-receiver_callbacks.cpp>`_ 
+    * `cmake file <https://github.com/slsdetectorgroup/api-examples/blob/master/CMakeLists.txt>`_. 
+    * how to install the slsDetectorPackage is provided :ref:`here <build from source using cmake>`.
+    * compile the example **e4-rxr** by:
+
+        .. code-block:: bash
+
+            cmake ../path/to/your/source -DCMAKE_PREFIX_PATH=/path/to/sls/install
+            make
+            

docs/src/troubleshooting.rst

@@ -0,0 +1,312 @@
+Troubleshooting
+=================
+
+If something is missing, don't hesitate to
+open an issue at our  `github repo issues
+<https://github.com/slsdetectorgroup/slsDetectorPackage/issues>`_. 
+
+Common
+------
+
+Missing Packets
+^^^^^^^^^^^^^^^
+Possible causes could be the following:
+
+#. Receiver PC is not tuned for socket buffer size and input packet queue.
+    * Refer to :ref:`Increase rmem_default, rmem_max and max_backlog<Receiver PC Tuning>`
+
+#. Wiring
+    * Faulty wiring or connecting cable to incorrect interface.
+
+#. Link up and speed
+    * Check to see if there is a blue LED on board to signal that the link is up. Check ethtool and find if Link Deteced:Yes and Speed is acceptable (>10k).
+
+#. Detector is not acquiring (Not Eiger)
+    * Take an acquisition with many images and using the following steps instead of acquire:
+        .. code-block:: bash
+
+            sls_detector_put status start
+            # keep executing this command to see if the number of frames left keeps decreasing,
+            # which means the detector is acquiring.
+            sls_detector_get framesl 
+
+    .. note ::
+    
+        If you are using multiple modules, the previous command can return -1 because each module will return different values. Then, check for a single module instead: sls_detector_get 0:framesl
+
+#. Data cable plugged into the wrong interface on board (Jungfrau)
+    * Please ensure that the data cable is plugged into the rightmost interface. The middle one is disabled for PCB v1.0 and must be selected via command for PCB v2.0.
+
+#. Detector is not sending data
+    * Check the board to see if the green LED is blinking next to the data cable, which means that the detector is sending data.
+
+#. Firewall or security feature
+    * A firewall or some security feature could be blocking the reception of data.
+
+#. Ethernet interface not configured properly
+    * Ensure that the interfaces used are configured properly with the right mask and ip. Eg. use ifconfig and route commands to verify.
+
+#. Ethernet interface not configured for Jumbo frames (10Gb)
+    * Ensure that the interfaces used in receiver pc have MTU 9000 (jumbo frames) enabled.
+
+#. Detector IP (Not Eiger)
+    * Ensure it is valid and does not end if 0 or 255. Also ensure that the detector ip is in the same subnet as rx_udpip and the masking in the interface configuration ensures this rule.
+
+#. Tcpdump or wireshark
+    * Use one of these to confirm that you receive packets (with the right filtering ie. source and destination ports, ip).
+
+#. Check SFP modules
+    * Check if the SFP modules on both sides of the fiber are of same type.
+
+#. Pinging the subnet (receiving only a few number of packets each time)
+    * If a switch is used between a receiver pc and detector instead of plugging the cables directly, one might have to ping any ip in the subnet of the Ethernet interface constantly so that it does not forget the ip during operation.
+    * Eg. if rx_udpip is 10.2.3.100, then ping constantly 10.2.3.xxx, where xxx is any ip other than 100.
+
+
+
+.. _Receiver PC Tuning:
+
+Receiver PC Tuning Options
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+#. Increase maximum receive socket buffer size and socket input packet queue. 
+    * Temporarily (until shut down)
+        .. code-block:: bash
+            
+            # check size
+            sysctl -a | grep rmem
+            sysctl -a | grep backlog
+
+            # set max and default (use 1Gb for Jungfrau and 100Mb for others)
+            sysctl net.core.rmem_max=$((100*1024*1024)) 
+            sysctl net.core.rmem_default=$((100*1024*1024))
+            sysctl net.core.netdev_max_backlog=250000
+
+
+    * Permanently
+            .. code-block:: bash
+
+                # edit /etc/sysctl.conf file
+                # set max and default (use 1Gb for Jungfrau and 100Mb for others)
+                net.core.rmem_max = 104857600
+                net.core.rmem_default= 104857600
+                net.core.netdev_max_backlog = 250000
+
+                # save file and run the following
+                sysctl -p
+
+    .. note ::
+        This is the most basic setting, which is sometimes more than enough.
+
+#. For 10Gb,
+    * MTU must be set up to 9000 for jumbo frames on detector, switch and server NIC
+    
+    * Set up static MAC address tables with separated VLANs
+
+#. Write to memory if not a large disk and pc not fast enough.
+    .. code-block:: bash
+
+        mount -t tmpfs none /ramdisk_folder
+        # or
+        mount -t tmpfs none /mnt/ramdisk -o size=10G
+        # check how many GB memory you can allocate, to avoid swapping otherwise    
+
+
+#. Modify ethtool settings. 
+    * rx ring parameters
+        .. code-block:: bash
+
+            # check 
+            ethtool -g xth1
+
+            # set to max value in your pc settings
+            ethtool -G xth1 rx 4096 
+
+    * coalesce settings (might not always work)
+        .. code-block:: bash
+
+            # check 
+            ethtool -c xth1
+
+            # set to max value in your pc settings
+            ethtool -C xth1 rx-usecs 100 
+
+    * pause parameters
+        .. code-block:: bash
+
+            # check 
+            ethtool -a xth1
+
+            # set to max value in your pc settings
+            ethtool -A xth1 rx on
+ 
+    .. note ::
+
+        | xth1 is example interface name. 
+        | These settings are lost at pc reboot.
+
+#. Give user speicific user scheduling privileges.
+    .. code-block:: bash
+
+        # edit /etc/security/limits.conf
+        # add following line or similar depending on your distribution
+        username rtprio 99
+
+    .. note ::
+
+        This is also set if slsReceiver is run as root user.
+        
+        
+#. Disable power saving in CPU frequency 
+    .. code-block:: bash
+
+        # or similar command depending on your distribution
+        cpupower frequency-info
+        cpupower frequency-set -g performance
+
+        # or
+        cpufreq-info
+        for i in ‘seq 0 7‘; do cpufreq-set -c $i -g performance; done
+
+
+slsReceiver Tuning
+^^^^^^^^^^^^^^^^^^
+
+#. Starting receiver as root to have scheduling privileges.
+
+#. For 10g, enable flow control
+    .. code-block:: bash
+
+        sls_detector_put flowcontrol10g 1
+
+#. Increase slsReceiver fifo depth between listening and processing threads.
+    .. code-block:: bash
+
+        sls_detector_get rx_fifodepth
+        # sets number of frames in fifo to 5000
+        sls_detector_put rx_fifodepth 5000
+
+#. Increase number of frames per file to reduce time taken to open and close files.
+    .. code-block:: bash
+
+        sls_detector_get rx_framesperfile
+        sls_detector_put rx_framesperfile 20000
+        # writes all frames into a single file
+        sls_detector_put rx_framesperfile 0
+
+
+Shared memory error
+^^^^^^^^^^^^^^^^^^^
+| For errors due to access or size, delete shared memory files nd try again.
+
+To list all shared memory files of sls detector package.
+    .. code-block:: bash
+        
+        ll /dev/shm/slsDetectorPackage*
+        -rw-------. 1 l_d l_d  136 Oct  1 11:42 /dev/shm/slsDetectorPackage_multi_0
+        -rw-------. 1 l_d l_d 3476 Oct  1 11:42 /dev/shm/slsDetectorPackage_multi_0_sls_0
+        -rw-------. 1 l_d l_d 3476 Oct  1 11:42 /dev/shm/slsDetectorPackage_multi_0_sls_1
+
+Cannot connect to detector
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+Ensure both control and stop servers are running on the detector.
+    .. code-block:: bash
+
+        ps -ef | grep jungfrauDetectorServer*
+
+Cannot connect to receiver
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+Start receiver before running a client command that needs to communicate with receiver.
+
+Receiver: cannot bind socket
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+#. slsReceiver or slsMultiReceiver is already open somewhere.
+    * Kill it and restart it.
+
+#. Tcp port is in use by another application.
+    * Start Receiver with a different tcp port and adjust it config file
+        .. code-block:: bash
+
+            # restart receiver with different port
+            slsReceiver -t1980
+
+            # adjust in config file
+            rx_hostname pcxxxx:1980
+
+.. _common troubleshooting multi module data:
+
+Cannot get multi module data
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Possible causes could be the following:
+
+#. Network
+    * If you have a direct connection, check to see if the network cables are connected correctly to corresponding interfaces on the PC side. Check also the network configuration and that the detectors and receivers are in the corresponding subnet.
+
+#. Power Supply
+    * Check power supply current limit.
+    * For Jungfrau, refer to :ref:`Jungfrau Power Supply Troubleshooting<Jungfrau Troubleshooting Power Supply>`.
+
+
+Cannot ping module (Nios)
+^^^^^^^^^^^^^^^^^^^^^^^^^
+
+If you executed "reboot" command on the board, you cannot ping it anymore unless you power cycle. To reboot the controller, please use the software command ("rebootcontroller"), which talks to the microcontroller.
+
+Gotthard2
+---------
+
+Cannot get data without a module attached
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+You cannot get data without a module attached as a specific pin is floating. Attach module to get data.
+
+
+Gotthard
+----------
+
+
+Missing first frame or next frame after a delay
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Connect the data link from the Module directly to receiver pc or to a private network.
+
+
+Jungfrau
+---------
+
+Temperature event occured
+^^^^^^^^^^^^^^^^^^^^^^^^^
+This will occur only if:
+* temp_threshold (threshold temperature) has been set to a value
+* temp_control (temperature control) set to 1
+* and the temperature overshooted the threshold temperature.
+
+**Consequence**
+* sls_detector_get temp_event will give 1 # temperature event occured
+* the chip will be powered off
+
+**Solution**
+* Even after fixing the cooling, any subsequent powerchip command will fail unless the temperature event has been cleared.
+
+* Clear the temperature event
+    .. code-block:: bash
+        
+        # gives the current chip power status (zero currently as chip powered off)
+        sls_detector_get powerchip 
+
+        # clear temperature event
+        sls_detector_put temp_event 0
+
+        # power on the chip
+        sls_detector_put powerchip 1 
+
+
+.. _Jungfrau Troubleshooting Power Supply:
+
+Cannot get multi module data
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+#. Check :ref:`Common Multi Module Troubleshooting<common troubleshooting multi module data>`
+#. Power Supply
+    * Comment out this line in the config file: powerchip 1
+    * Powering on the chip increases the power consumption by a considerable amount. If commenting out this line aids in getting data (strange data due to powered off chip), then it could be the power supply current limit. Fix it (possibly to 8A current limit) and uncomment the powerchip line back in config file.
+

docs/src/virtualserver.rst

@@ -0,0 +1,149 @@
+.. _Virtual Detector Servers:
+Detector Simulators
+===================
+
+Compilation
+-----------
+
+* Using CMake, turn on the option 
+    .. code-block:: bash  
+        
+        SLS_USE_SIMULATOR=ON
+
+* Using cmk.sh script,
+     .. code-block:: bash  
+        
+        ./cmk.sh -bsj9 #option s is for simulator
+
+
+Binaries
+^^^^^^^^
+    .. code-block:: bash  
+
+        eigerDetectorServerMaster_virtual
+        eigerDetectorServerSlaveTop_virtual
+        eigerDetectorServerSlaveBottom_virtual
+        jungfrauDetectorServer_virtual
+        gotthardDetectorServer_virtual
+        gotthard2DetectorServer_virtual
+        mythen3DetectorServer_virtual
+        moenchDetectorServer_virtual
+        ctbDetectorServer_virtual
+
+
+Arguments
+---------
+
+The arguments are the same as the :ref:`normal server arguments<Detector Server Arguments>`.
+
+When using multiple modules, use different ports for each virtual server.
+    .. code-block:: bash  
+
+        # will start control server at port 1912 and stop server at port 1913
+        jungfrauDetectorServer --port 1912 &
+
+        # will start second control server at port 1914 and stop server at port 1915
+        jungfrauDetectorServer --port 1914 &
+
+
+Client
+------
+
+.. code-block:: bash  
+
+    # hostname should include the port (if not default)
+    sls_detector_put hostname localhost:1912+localhost:1914+
+
+    # or use virtual command, instead of hostname
+    # connects to 2 servers at localhost 
+    # (control servers: 1912, 1914; stop servers: 1913, 1915)
+    sls_detector_put virtual 2 1912 
+
+Use the same in the config file.
+Detector API has a method 'isVirtualDetectorServer' to check if on-board detector server is virtual.
+
+
+Sample Config file
+^^^^^^^^^^^^^^^^^^
+There are sample config files for each detector in slsDetectorPackage/examples folder.
+
+For a Single Module
+    .. code-block:: bash  
+
+        # connects to control port 1912
+        hostname localhost:1912+
+
+        # connects to receiver at ports 2012
+        rx_hostname mpc1922:2012+
+
+        # sets destination udp ports (not needed, default is 50001)
+        udp_dstport 50012
+
+        # source udp ips must be same subnet at destintaion udp ips
+        udp_srcip 192.168.1.112
+
+        # destination udp ip picked up from rx_hostname (if auto)
+        udp_dstip auto
+
+        # set file path
+        fpath /tmp
+
+For Multiple Modules
+    .. code-block:: bash  
+
+        # connects to control ports 1912, 1914 and stop ports 1913, 1915
+        virtual 2 1912
+        # or hostname localhost:1912+localhost:1914+
+
+        # connects to receivers at ports 2012 and 2014
+        rx_hostname mpc1922:2012+mpc1922:2013+
+
+        # sets differernt destination udp ports
+        0:udp_dstport 50012
+        1:udp_dstport 50014
+
+        # source udp ips must be same subnet at destintaion udp ips
+        0:udp_srcip 192.168.1.112
+        1:udp_srcip 192.168.1.114
+
+        # destination udp ip picked up from rx_hostname (if auto)
+        udp_dstip auto
+
+        # set file path
+        fpath /tmp
+
+Receivers
+----------
+Same as if you would use an actual detector
+
+For a Single Module
+    .. code-block:: bash  
+
+        slsReceiver -t2012
+
+
+For Multiple Modules
+    .. code-block:: bash  
+
+        # slsMultiReceiver [starting port] [number of receivers] [print each frame header for debugging]
+        slsMultiReceiver 2012 2 0 
+
+Gui
+----
+| Same as if you would use an actual detector.
+| Compile with SLS_USE_GUI=ON in cmake or -g option in cmk.sh script.
+
+.. code-block:: bash  
+
+    slsDetectorGui
+
+Limitations
+-----------
+
+#. Data coming out of virtual server is fake. Value at each pixel/ channel is incremented by 1.
+
+#. A stop will stop the virtual acquisition only at the start of every new frame.
+
+#. Triggers are counted as number of virtual frames. trigger command to send a software trigger (Mythen3 & Eiger) is not implemented in virtual server.
+
+#. firmware version and serial number will give 0.

evalVersionVariables.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 GITREPO1='git remote -v'
 GITREPO2=" | grep \"fetch\" | cut -d' ' -f1"
 BRANCH1='git branch -v'

examples/eiger_10Gb.config

@@ -1,33 +1,37 @@
-detsizechan 1024 512 
+# detetctor geometry, long side of the module first
-#detetctor geometry, long side of the module first
+detsize 1024 512 
+
+# detector hostname for controls
 hostname beb059+beb058+ 
-#1Gb detector hostname for controls
 
-0:rx_tcpport 1991 
+# 1Gb receiver pc hostname with tcp port to configure receiver
-#tcpport for the first halfmodule                 
+rx_hostname x12sa-vcons:1991+x12sa-vcons:1992
-0:rx_udpport 50011 
-#udp port first quadrant, first halfmodule       
-0:rx_udpport2 50012 
-#udp port second quadrant, first halfmodule       
-0:rx_udpip 10.0.30.210 
-#udp IP of the receiver over 10Gb              
-0:detectorip 10.0.30.100 
-#first half module 10 Gb IP 
 
-1:rx_tcpport 1992 
+# udp port first quadrant, first halfmodule         
-#tcpport for the second halfmodule                  
+0:udp_dstport 50011 
-1:rx_udpport 50013 
-#udp port first quadrant, second halfmodule     
-1:rx_udpport2 50014 
-#udp port second quadrant, second halfmodule  
-1:rx_udpip 10.0.40.210  
-#udp IP of the receiver over 10Gb, 
-#can be the same or different from 0:rx_udpip                                   
-1:detectorip 10.0.40.101 
-#second half module 10 Gb IP 
 
-rx_hostname x12sa-vcons 
+# udp port second quadrant, first halfmodule       
-#1Gb receiver pc hostname
+0:udp_dstport2 50012 
 
-outdir /sls/X12SA/data/x12saop/Data10/Eiger0.5M
+# udp IP of the receiver over 10Gb              
-threaded 1
+0:udp_dstip 10.0.30.210 
+
+# first half module 10 Gb IP (same subnet as 0:udp_dstip)
+0:udp_srcip 10.0.30.100 
+
+# udp port first quadrant, second halfmodule       
+1:udp_dstport 50013 
+
+# udp port second quadrant, second halfmodule  
+1:udp_dstport2 50014 
+    
+# udp IP of the receiver over 10Gb, 
+1:udp_dstip 10.0.40.210  
+
+# second half module 10 Gb IP 
+# can be the same or different from 0:rx_udpip 
+# butsame subnet as 1:udp_dstip                              
+1:udp_srcip 10.0.40.101 
+
+# output directory
+fpath /sls/X12SA/data/x12saop/Data10/Eiger0.5M

examples/eiger_1Gb.config

@@ -1,24 +1,21 @@
-detsizechan 1024 512 
+# detetctor geometry, long side of the module first
-#detetctor geometry, long side of the module first
+detsize 1024 512 
+
+# detector hostname for controls
 hostname beb059+beb058+ 
-#1Gb detector hostname for controls
 
-0:rx_tcpport 1991 
+# 1Gb receiver pc hostname with tcp port to configure receiver
-#tcpport for the first halfmodule                 
+rx_hostname x12sa-vcons:1991+x12sa-vcons:1992
-0:rx_udpport 50011 
+
-#udp port first quadrant, first halfmodule         
+# udp port first quadrant, first halfmodule         
-0:rx_udpport2 50012 
+0:udp_dstport 50011 
 #udp port second quadrant, first halfmodule       
+0:udp_dstport2 50012 
 
-1:rx_tcpport 1992 
+# udp port first quadrant, second halfmodule       
-#tcpport for the second halfmodule               
+1:udp_dstport 50013 
-1:rx_udpport 50013 
+# udp port second quadrant, second halfmodule  
-#udp port first quadrant, second halfmodule       
+1:udp_dstport2 50014 
-1:rx_udpport2 50014 
-#udp port second quadrant, second halfmodule  
     
-rx_hostname x12sa-vcons 
+# output directory
-#1Gb receiver pc hostname
+fpath /sls/X12SA/data/x12saop/Data10/Eiger0.5M
-
-outdir /sls/X12SA/data/x12saop/Data10/Eiger0.5M
-threaded 1

examples/gotthard.config

@@ -1,27 +1,12 @@
+# detector hostname
 hostname bchip007
 
-#0:port 1952
+# receiver pc hostname of 1Gb IP of the machine
-#0:stopport 1953
+rx_hostname my_receiver_hostname
-#0:rx_tcpport 1956 must also have this in receiver config file
+
-0:angdir 1.000000
+# output directory
-0:moveflag 0.000000
+fpath  /bigRAID/datadir_gotthard/rec_test_data
-0:extsig:0 off
+
-#0:detectorip 129.129.202.9
+# high voltage
-0:detectormac 00:aa:bb:cc:dd:ee
+highvoltage 120
-0:rx_udpport 50004
-0:rx_udpip 129.129.202.98
-0:rx_hostname pc6898
-0:outdir /bigRAID/datadir_gotthard/rec_test_data
-0:highvoltage 120
-master -1
-sync none
-outdir /bigRAID/datadir_gotthard/rec_test_data
-headerbefore none
-headerafter none
-headerbeforepar none
-headerafterpar none
-badchannels none
-angconv none
-globaloff 0.000000
-binsize 0.001000
 

examples/gotthard_II.config

@@ -1,29 +1,34 @@
+# detector hostname
 hostname strip3
 
+# receiver pc hostname with tcp port
+rx_hostname pc12365:1982
+
+# udp source ip
 udp_srcip 10.1.1.184
+
+# udp destination ip (receiver interface ip)
 udp_dstip 10.1.1.107
 
+# only needed for debugging veto signals
+# udp destination port must be different from udp_dstport (default of 50001)
 udp_dstport2 50084
 udp_srcip2 10.1.1.185
 udp_dstip2 10.1.1.107
 
-rx_hostname pc12365:1954
+# output directory
-#udp_dstmac 3c:fd:fe:d2:a4:25
 fpath  /tmp
-fname run
+
+# disable file writing
 fwrite 0
 
-bursts 10
+# to enable 2nd interface for veto debugging
-frames 2700
-burstperiod 100ms
-
 numinterfaces 2
+
+# enable veto data streaming
 veto 1
 
-#fixing data looks
 # Sampling pipeline 1 clk
 reg 0x120 0x00000010
 clkphase 1 135 deg
 
-
-

examples/gotthard_setup.det

@@ -1,32 +0,0 @@
-fname run
-index 0
-dr 16
-settings veryhighgain
-threshold 0
-exptime 0.000002990
-period 0.000024984
-delay 0.999999968
-gates 1
-frames 300000.000000000
-triggers 1.000000000
-timing auto
-fineoff 0.000000
-startscript none
-startscriptpar none
-stopscript none
-stopscriptpar none
-scriptbefore none
-scriptbeforepar none
-scriptafter none
-scriptafterpar none
-scan0script none
-scan0par none
-scan0prec 0
-scan0steps 0 
-scan1script none
-scan1par none
-scan1prec 0
-scan1steps 0 
-ratecorr 0.000000
-flatfield none
-badchannels none

examples/gotthard_two.config

@@ -1,17 +1,17 @@
-detsizechan 2560 1
+# detector hostname
-
 hostname bchip074+bchip075+
 
+# receiver pc hostname of 1Gb IP of the machine (with tcpport)
+rx_hostname my_receiver_hostname+my_receiver_hostname:1955
 
-0:extsig:0 trigger_in_rising_edge
+# default udp destination port 50001
-0:rx_tcpport 1954
+1:udp_dstport 50002
-0:rx_udpport 50001
-0:highvoltage 0
 
-1:extsig:0 trigger_in_rising_edge
+# output directory
-1:rx_tcpport 1955
+fpath  /tmp
-1:rx_udpport 50002
+
-1:highvoltage 0
+extsig 0 trigger_in_rising_edge
+highvoltage 0
 
 ##############################################################################
 #########
@@ -19,39 +19,27 @@ hostname bchip074+bchip075+
 #########
 ##############################################################################
 
-# #replace my_receiver_hostname with the hostname of IP of the machine where the receiver runs
+## receiver pc hostname of 1Gb IP of the machine
-#0:rx_zmqip my_receiver_hostname 
+#rx_zmqip my_receiver_hostname 
-#0:rx_zmqport 30003
+## client/gui or softIOc pc hostname
-# #replace my_client_hostname with the hostname of IP of the machine where the client/GUI or softIOC runs
+#zmqip my_client_hostname 
-#0:zmqip my_client_hostname 
-#0:zmqport  40003
 
-# #replace my_receiver_hostname with the hostname of IP of the machine where the receiver runs
+## rxr zmq streaming out port
-#1:rx_zmqip my_receiver_hostname 
+#0:rx_zmqport 30003
+## client zmq listening port
+#0:zmqport  40003
+## rxr zmq streaming out port
 #1:rx_zmqport 30004
-# #replace my_client_hostname with the hostname of IP of the machine where the client/GUI or softIOC runs
+## client zmq listening port
-#1:zmqip  my_client_hostname 
 #1:zmqport  40004
 
+## stream out every frame via zmq
+#rx_zmqfreq 1
+## enable zmq streaming
+#rx_zmqstream 1
+
 ##############################################################################
 #########
 ######### until here
 #########
 ##############################################################################
-
-
-r_readfreq 1
-rx_zmqstream 1
-
-#replace my_receiver_hostname with the hostname of 1Gb IP of the machine where the receiver runs
-rx_hostname my_receiver_hostname
-rx_zmqstream 1
-outdir /tmp/
-
-
-settings veryhighgain
-exptime 0.000005
-period 0.0001
-
-highvoltage 90
-

examples/jctb_moench03_T1.config

@@ -8,8 +8,6 @@ adcclk 20
 dbitclk 40
 
 
-
-
 patword 0000 0000000000000000
 patword 0001 0000000000000000
 patword 0002 0008000900080000
@@ -424,21 +422,24 @@ patwaittime1 0
 patwait2 0400
 patwaittime2 0
 
-
+#############################################
-#0:rx_tcpport 1977
+### edit with hostname or 1Gbs IP address of your server
+############################################
+rx_hostname mpc2011
+#rx_hostname mpc2011:1977
 
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-0:udp_dstip 10.1.1.102
+udp_dstip 10.1.1.102
-#0:udp_dstip 129.129.202.136
+#udp_dstip 129.129.202.136
 #############################################
 ### edit with any number in the subnet of your server (first 3 numbers as above)
 ############################################
-0:udp_srcip 10.1.1.19
+udp_srcip 10.1.1.19
-#0:udp_srcip 129.129.202.13
+#udp_srcip 129.129.202.13
 
-0:udp_dstport 33410
+udp_dstport 33410
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
@@ -452,13 +453,7 @@ patwaittime2 0
 #zmqport 50001
 
 
-#############################################
-### edit with hostname or 1Gbs IP address of your server
-############################################
-rx_hostname mpc2011
-
 tengiga 1
-
 rx_zmqstream 1
 rx_zmqfreq 1
 
@@ -496,6 +491,5 @@ rx_jsonpara detectorMode analog
 #flags newpedestal
 #flags analog
 
-reg 0x5e 0x00010000
+powerchip 1
-#powerchip 1
 highvoltage 90

examples/jungfrau.config

@@ -1,16 +1,38 @@
-hostname localhost
+# detector hostname
+hostname bchip052
 
-0:rx_udpport 50004
+# 1Gb receiver pc hostname (default tcpport: 1954)
-0:rx_udpip 172.24.8.84
+rx_hostname pcmoench01
-0:detectorip 172.24.8.254
-rx_hostname localhost
 
-#powerchip 1
+# udp destination port (receiver)
-#highvoltage 200
+udp_dstport 50004
 
-#extsig:0 trigger_in_rising_edge
+# udp destination ip (receiver)
-#timing trigger
+udp_dstip 10.0.1.100
 
-outdir /tmp/slsdetector
+# udp source ip (same subnet as udp_dstip)
+udp_srcip 10.0.1.184
 
+# PCBv2.0 (using 2 interfaces, top)
+udp_dstport2 50005
+udp_dstip2 10.0.2.100 
+udp_srcip2 10.0.2.184
+# enable two interfaces
+numinterfaces 2
+# select inner interface(effective only when numinterfaces is 1)
+#selinterface 1
 
+# power on chip
+powerchip 1
+
+# high voltage
+highvoltage 200
+
+# timing to trigger
+timing trigger
+
+# output file directory
+fpath /external_pool/jungfrau_data/softwaretest
+
+# disable file writing
+fwrite 0

examples/jungfrau_custom_receiver.config

@@ -0,0 +1,39 @@
+# detector hostname
+hostname bchip052
+
+# do not use any rx_ or "file" (eg. fwrite, fpath) commands, which go to slsReceiver/slsMultiReceiver
+
+# udp destination port (receiver)
+udp_dstport 50004
+
+# udp destination ip (receiver)
+udp_dstip 10.0.1.100
+
+# udp source ip (same subnet as udp_dstip)
+udp_srcip 10.0.1.184
+
+# udp destination mac
+udp_dstmac 22:47:d5:48:ad:ef
+
+
+# PCBv2.0 (using 2 interfaces, top)
+udp_dstport2 50005
+udp_dstip2 10.0.2.100 
+udp_srcip2 10.0.2.184
+udp_dstmac2 22:47:d5:48:ad:ff
+
+
+# enable two interfaces
+numinterfaces 2
+# select inner interface(effective only when numinterfaces is 1)
+#selinterface 1
+
+# power on chip
+powerchip 1
+
+# high voltage
+highvoltage 200
+
+# timing to trigger
+timing trigger
+

examples/jungfrau_two.config

@@ -1,26 +1,49 @@
-detsizechan 1024 1024
+# detector geometry x, y
+detsize 1024 1024
+
+# detector hostname
 hostname bchip048+bchip052+
 
-0:rx_udpport 50004
+# 1Gb receiver pc hostname  (default tcpport: 1954)
-0:rx_udpip 10.1.1.100
+rx_hostname pcmoench01+pcmoench01:1955
-0:rx_udpmac F4:52:14:2F:32:00
-0:detectorip 10.1.1.10
-0:detectormac 00:aa:bb:cc:dd:33
 
-1:rx_tcpport 1955
-1:rx_udpport 50005
-1:rx_udpip 10.1.1.100
-1:rx_udpmac F4:52:14:2F:32:00
-1:detectorip 10.1.1.11
-1:detectormac 00:aa:bb:cc:dd:33
 
-rx_hostname pcmoench01
 
+# udp configurations for 1st module
+# udp destination port (receiver)
+0:udp_dstport 50004
+
+# udp destination ip (receiver)
+0:udp_dstip 10.1.1.100
+
+# udp source ip (same subnet as 0:udp_dstip)
+0:udp_srcip 10.1.1.10
+
+
+
+# udp configurations for 2nd module
+# udp destination port (receiver)
+1:udp_dstport 50005
+
+# udp destination ip (receiver)
+1:udp_dstip 10.1.1.100
+
+# udp source ip (same subnet as 1:udp_dstip)
+1:udp_srcip 10.1.1.11
+
+
+
+# power on chip
 powerchip 1
+
+# high voltage
 highvoltage 200
-#extsig:0 trigger_in_rising_edge
-#timing trigger
 
-outdir /external_pool/jungfrau_data/softwaretest
+# timing to trigger
+timing trigger
 
+# output file directory
+fpath /external_pool/jungfrau_data/softwaretest
 
+# disable file writing
+fwrite 0

examples/measurement_setup.det

@@ -0,0 +1,32 @@
+# file name prefix
+fname measurement1
+
+# file acquisition index
+findex 3000
+
+# dynamic range (only for Mythen3 and Eiger)
+dr 32
+
+# settings 
+settings veryhighgain
+
+# exposure time
+exptime 100us
+
+# period
+period 2ms
+
+# frames per trigger
+frames 30000
+
+# timing mode
+timing trigger
+
+# triggers
+triggers 10
+
+# delay after trigger
+delay 1ms
+
+
+

examples/moench03_T1.config

@@ -1,36 +1,35 @@
-initialchecks 0
+#initialchecks 0
 #############################################
 ### edit with hostname or IP address of your detector 
 ############################################
-hostname bchip181+
+#hostname bchip181+
+hostname bchip119.psi.ch
 
 #############################################
 ### edit with hostname or 1Gbs IP address of your server
 ############################################
-rx_hostname mpc2011
+rx_hostname mpc2011:1777
 
-rx_tcpport 1954
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-udp_dstip 10.1.1.102
+udp_dstip 10.1.2.102
 #############################################
 ### edit with any number in the subnet of your server (first 3 numbers as above)
 ############################################
-udp_srcip 10.1.1.19
+udp_srcip 10.1.2.19
-udp_dstport 32411
+udp_dstport 32000
 
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-rx_zmqip 10.1.1.102
+rx_zmqip 10.1.2.102
-rx_zmqport 50003
+rx_zmqport 77000
 #############################################
 ### edit with 1 Gbs IP of PC where you will run the GUI
 ############################################
-zmqip 129.129.202.136
+zmqip  129.129.202.132
-zmqport 50001
+zmqport 77001
-
 
 
 
@@ -39,14 +38,16 @@ rx_zmqstream 1
 
 
 
-frames 100000
+frames 1000
 period 0.0006
+exptime 0.00035
+
 #############################################
 ### edit with directory you want to write to
 ############################################
-fpath /mnt/moench_data/scratch/
+fpath /mnt/moench_data/scratch1/
+
 fwrite 0
-rx_zmqstream 1
 
 rx_jsonpara frameMode frame
 rx_jsonpara detectorMode counting
@@ -61,3 +62,9 @@ highvoltage 90
 #adcreg 0x14 0x40
 
 
+
+frames 10
+period 0.1
+rx_jsonpara subframes 1
+rx_jsonpara frameMode raw
+rx_jsonpara detectorMode analog

examples/two_gotthard.config

@@ -1,55 +0,0 @@
-#####Any line with a # is not read######
-
-detsizechan 2560 1
-
-hostname bchip007+bchip009+
-
-#0:hostname bchip007
-#0:port 1952
-#0:stopport 1953
-#0:rx_tcpport 1956 
-0:angdir 1.000000
-0:moveflag 0.000000
-0:ffdir /home/l_msdetect
-0:extsig:0 off
-
-0:detectorip 10.1.1.2
-#0:detectormac 00:aa:bb:cc:dd:ee
-#0:rx_udpport 50001
-0:rx_udpip 10.1.1.1
-0:rx_hostname 129.129.202.134 
-0:outdir /data/speedt
-0:highvoltage 120
-
-
-#1:hostname bchip009
-#1:port 1952
-#1:stopport 1953
-1:rx_tcpport 1957
-1:angdir 1.000000
-1:moveflag 0.000000
-1:ffdir /home/l_msdetect
-1:extsig:0 off
-
-1:detectorip 10.1.2.2
-#1:detectormac 00:aa:bb:cc:dd:ee
-1:rx_udpport 50004
-1:rx_udpip 10.1.2.1
-1:rx_hostname 129.129.202.134 
-1:outdir /data/speedt
-1:highvoltage 120
-
-
-master -1
-sync none
-outdir /data/speedt
-ffdir /home/l_msdetect
-headerbefore none
-headerafter none
-headerbeforepar none
-headerafterpar none
-badchannels none
-angconv none
-globaloff 0.000000
-binsize 0.001000
-

examples/virtual_ctb_moench.config

@@ -0,0 +1,477 @@
+# detector hostname
+hostname localhost:1910
+
+# receiver hostname
+rx_hostname mpc1922:2010
+
+# udp destination ports
+udp_dstport 50010
+
+# udp destination ip from rx_hostname
+udp_dstip auto
+
+# udp source ip (same subnet as udp_dstip)
+udp_srcip 192.168.1.100
+
+# output file directory
+fpath /tmp
+
+# disable file writing
+fwrite 0
+
+
+# default clocks
+runclk 40
+adcclk 20
+dbitclk 40
+
+
+# patterns
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+patword 0x0184 0x0008599f0008503a
+patword 0x0185 0x0008599f0008503a
+patword 0x0186 0x0008599f0008503a
+patword 0x0187 0x0008599f0008503a
+patword 0x0188 0x0008599f0008503a
+patword 0x0189 0x0008599f0008503a
+patword 0x018a 0x0008599f0008503a
+patword 0x018b 0x0008599f0008503a
+patword 0x018c 0x0008599f0008503a
+patword 0x018d 0x0008599f0008503a
+patioctrl 0x8f0effff6dbffdbf
+patlimits 0x0000 0x018c
+patloop0 0x013a 0x016b
+patnloop0 0x199
+patloop1 0x0400 0x0400
+patnloop1 0
+patloop2 0x0400 0x0400
+patnloop2 0
+patwait0 0x00aa
+patwaittime0 10000
+patwait1 0x0400
+patwaittime1 0
+patwait2 0x0400
+patwaittime2 0
+
+# dacs
+dac 6 800
+dac 0 1300
+dac 4 1428
+dac 1 1000
+dac 7 900
+dac 3 680
+dac 2 1400
+dac 5 1200
+
+
+adcinvert 4a342593
+
+# analog samples
+asamples 5000
+
+# digital samples
+dsamples 0
+
+# adc phase
+adcphase 30 deg
+
+# adc pipeline
+adcpipeline 14
+
+# analog readout
+romode analog
+
+# frames
+frames 1
+
+# period
+period 1ms
+
+

examples/virtual_eiger_1_half_module.config

@@ -0,0 +1,22 @@
+# detector hostname
+hostname localhost:1900
+
+# receiver hostname
+rx_hostname mpc1922:2000
+
+# udp destination ports
+udp_dstport 50000
+udp_dstport2 50001
+
+# udp destination ip from rx_hostname
+udp_dstip auto
+
+# output file directory
+fpath /tmp
+
+# disable file writing
+fwrite 0
+
+#imagetest 1
+
+

examples/virtual_eiger_2_half_modules.config

@@ -0,0 +1,23 @@
+# detector hostname
+hostname localhost:1900+localhost:1902+
+
+# receiver hostname
+rx_hostname mpc1922:2000+mpc1922:2001+
+
+# udp destination ports
+0:udp_dstport 50000
+0:udp_dstport2 50001
+1:udp_dstport 50002
+1:udp_dstport2 50003
+
+# udp destination ip from rx_hostname
+udp_dstip auto
+
+# output file directory
+fpath /tmp
+
+# disable file writing
+fwrite 0
+
+#imagetest 1
+

examples/virtual_gotthard.config

@@ -0,0 +1,23 @@
+# detector hostname
+hostname localhost:1904
+
+# receiver hostname
+rx_hostname mpc1922:2004
+
+# udp destination ports
+udp_dstport 50004
+
+# udp destination ip from rx_hostname
+udp_dstip auto
+
+# udp source ip (same subnet as udp_dstip)
+udp_srcip 192.168.1.100
+
+# output file directory
+fpath /tmp
+
+# disable file writing
+fwrite 0
+
+
+

examples/virtual_gotthard2.config

@@ -0,0 +1,37 @@
+# detector hostname
+hostname localhost:1914
+
+# receiver hostname
+rx_hostname mpc1922:2014
+
+# udp destination ports
+udp_dstport 50014
+
+# udp destination ip from rx_hostname
+udp_dstip auto
+
+# udp source ip (same subnet as udp_dstip)
+udp_srcip 192.168.1.100
+
+# output file directory
+fpath /tmp
+
+# disable file writing
+fwrite 0
+
+# enable 2nd interface for veto debugging
+# udp destination port for veto
+udp_dstport2 50015
+# udp destination ip (from rx_hostname)
+udp_dstip2 auto
+# udp source ip (same subnet as udp_dstip)
+udp_srcip2 192.168.1.100
+
+# to enable 2nd interface for veto debugging
+numinterfaces 2
+
+# enable veto data streaming
+veto 1
+
+
+

examples/virtual_jungfrau.config

@@ -0,0 +1,32 @@
+# detector hostname
+hostname localhost:1906
+
+# receiver hostname
+rx_hostname mpc1922:2006
+
+# udp destination ports
+udp_dstport 50006
+udp_dstport2 50007
+
+# udp destination ip from rx_hostname
+udp_dstip auto
+udp_dstip2 auto
+
+# udp source ip (same subnet as udp_dstip)
+udp_srcip 192.168.1.100
+udp_srcip2 192.168.1.100
+
+# output file directory
+fpath /tmp
+
+# disable file writing
+fwrite 0
+
+#imagetest 1
+#frames 1
+
+# enable two interfaces
+numinterfaces 2
+
+# select inner interface(effective only when numinterfaces is 1)
+#selinterface 1

examples/virtual_jungfrau_4.config

@@ -0,0 +1,47 @@
+# detector geometry
+detsize 2048 1024
+
+# detector hostname
+virtual 4 1952
+
+# receiver hostname and tcpports
+0:rx_tcpport 1970
+1:rx_tcpport 1971
+2:rx_tcpport 1972
+3:rx_tcpport 1973
+rx_hostname mpc1922
+
+# udp destination ports
+0:udp_dstport2 50001
+0:udp_dstport2 50002
+1:udp_dstport 50003
+1:udp_dstport2 50004
+2:udp_dstport 50005
+2:udp_dstport2 50006
+3:udp_dstport 50007
+3:udp_dstport2 50008
+
+# udp destination ip from rx_hostname
+udp_dstip auto
+udp_dstip2 auto
+
+# udp source ip (same subnet as udp_dstip)
+udp_srcip 192.168.1.100
+udp_srcip2 192.168.1.100
+
+# transmission delay frame
+0:txndelay_frame 0
+1:txndelay_frame 1
+2:txndelay_frame 2
+3:txndelay_frame 3
+
+# output file directory
+fpath /tmp
+
+# disable file writing
+fwrite 0
+
+#imagetest 1
+#frames 1
+
+

examples/virtual_moench.config

@@ -0,0 +1,21 @@
+# detector hostname
+hostname localhost:1908
+
+# receiver hostname
+rx_hostname mpc1922:2008
+
+# udp destination ports
+udp_dstport 50008
+
+# udp destination ip from rx_hostname
+udp_dstip auto
+
+# udp source ip (same subnet as udp_dstip)
+udp_srcip 192.168.1.100
+
+# output file directory
+fpath /tmp
+
+# disable file writing
+fwrite 0
+

examples/virtual_mythen3.config

@@ -0,0 +1,24 @@
+# detector hostname
+hostname localhost:1912
+
+# receiver hostname
+rx_hostname mpc1922:2012
+
+# udp destination ports
+udp_dstport 50012
+
+# udp destination ip from rx_hostname
+udp_dstip auto
+
+# udp source ip (same subnet as udp_dstip)
+udp_srcip 192.168.1.100
+
+# output file directory
+fpath /tmp
+
+# disable file writing
+fwrite 0
+
+# load ascii pattern file
+#pattern ../pat.txt
+

genVersionHeader.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 #####! /bin/awk -f
 
 

integrationTests/CMakeLists.txt

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 # MESSAGE( STATUS "CMAKE_CURRENT_SOURCE_DIR: " ${CMAKE_CURRENT_SOURCE_DIR} )
 # MESSAGE( STATUS "PROJECT_SOURCE_DIR: " ${PROJECT_SOURCE_DIR} )
 

integrationTests/test-eigerIntegration.cpp

@@ -1,6 +1,8 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include "DetectorImpl.h"
 #include "catch.hpp"
-#include "string_utils.h"
+#include "sls/string_utils.h"
 #include "tests/globals.h"
 #include <iostream>
 

integrationTests/test-integrationDectector.cpp

@@ -1,14 +1,16 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 #include "catch.hpp"
 
-#include "ClientSocket.h"
 #include "DetectorImpl.h"
 #include "Module.h"
-#include "logger.h"
+#include "sls/ClientSocket.h"
-#include "sls_detector_defs.h"
+#include "sls/logger.h"
+#include "sls/sls_detector_defs.h"
 
-#include "Timer.h"
+#include "sls/Timer.h"
-#include "sls_detector_funcs.h"
+#include "sls/sls_detector_funcs.h"
 #include <iostream>
 #include <vector>
 #define VERBOSE
@@ -446,8 +448,8 @@ TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert",
     CHECK(m.readRegister(0x7b) == 0x1003E);
 }
 
-TEST_CASE("Eiger or Jungfrau startingfnum",
+TEST_CASE("Eiger or Jungfrau nextframenumber",
-          "[.eigerintegration][.jungfrauintegration][startingfnum]") {
+          "[.eigerintegration][.jungfrauintegration][nextframenumber]") {
     SingleDetectorConfig c;
 
     // pick up multi detector from shm id 0
@@ -465,8 +467,8 @@ TEST_CASE("Eiger or Jungfrau startingfnum",
     // starting fnum
     uint64_t val = 8;
 
-    m.setStartingFrameNumber(val);
+    m.setNextFrameNumber(val);
-    CHECK(m.getStartingFrameNumber() == val);
+    CHECK(m.getNextFrameNumber() == val);
     CHECK(m.acquire() == slsDetectorDefs::OK);
     CHECK(m.getReceiverCurrentFrameIndex() == val);
 
@@ -474,21 +476,21 @@ TEST_CASE("Eiger or Jungfrau startingfnum",
     CHECK(m.acquire() == slsDetectorDefs::OK);
     CHECK(m.getReceiverCurrentFrameIndex() == val);
 
-    CHECK_THROWS_AS(m.setStartingFrameNumber(0), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setNextFrameNumber(0), sls::RuntimeError);
 
     if (m.getDetectorTypeAsString() == "Eiger") {
         val = 281474976710655;
     } else if (m.getDetectorTypeAsString() == "Jungfrau") {
         val = 18446744073709551615;
     }
-    m.setStartingFrameNumber(val);
+    m.setNextFrameNumber(val);
-    CHECK(m.getStartingFrameNumber() == val);
+    CHECK(m.getNextFrameNumber() == val);
     CHECK(m.acquire() == slsDetectorDefs::OK);
     CHECK(m.getReceiverCurrentFrameIndex() == val);
-    CHECK(m.getStartingFrameNumber() == (val + 1));
+    CHECK(m.getNextFrameNumber() == (val + 1));
 }
 
-TEST_CASE("Eiger readnlines", "[.eigerintegration][readnlines]") {
+TEST_CASE("Eiger partialread", "[.eigerintegration][partialread]") {
     SingleDetectorConfig c;
 
     // pick up multi detector from shm id 0
@@ -501,16 +503,16 @@ TEST_CASE("Eiger readnlines", "[.eigerintegration][readnlines]") {
 
     m.setDynamicRange(16);
     m.enableTenGigabitEthernet(0);
-    m.setReadNLines(256);
+    m.setPartialReadout(256);
-    CHECK(m.getReadNLines() == 256);
+    CHECK(m.getPartialReadout() == 256);
-    m.setReadNLines(1);
+    m.setPartialReadout(1);
-    CHECK(m.getReadNLines() == 1);
+    CHECK(m.getPartialReadout() == 1);
 
     m.setDynamicRange(8);
-    m.setReadNLines(256);
+    m.setPartialReadout(256);
-    CHECK(m.getReadNLines() == 256);
+    CHECK(m.getPartialReadout() == 256);
-    CHECK_THROWS_AS(m.setReadNLines(1), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setPartialReadout(1), sls::RuntimeError);
-    CHECK(m.getReadNLines() == 256);
+    CHECK(m.getPartialReadout() == 256);
-    CHECK_THROWS_AS(m.setReadNLines(0), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setPartialReadout(0), sls::RuntimeError);
-    m.setReadNLines(256);
+    m.setPartialReadout(256);
 }

integrationTests/test-integrationMulti.cpp

@@ -1,6 +1,8 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include "DetectorImpl.h"
 #include "catch.hpp"
-#include "string_utils.h"
+#include "sls/string_utils.h"
 #include "tests/globals.h"
 #include <iostream>
 

integrationTests/test.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 // tests-main.cpp
 #define CATCH_CONFIG_MAIN
 #include "catch.hpp"

libzmq-pkg-config/FindZeroMQ.cmake

@@ -0,0 +1,27 @@
+#From: https://github.com/zeromq/cppzmq/
+set(PKG_CONFIG_USE_CMAKE_PREFIX_PATH ON)
+find_package(PkgConfig)
+pkg_check_modules(PC_LIBZMQ QUIET libzmq)
+
+set(ZeroMQ_VERSION ${PC_LIBZMQ_VERSION})
+find_library(ZeroMQ_LIBRARY NAMES libzmq.so libzmq.dylib libzmq.dll
+             PATHS ${PC_LIBZMQ_LIBDIR} ${PC_LIBZMQ_LIBRARY_DIRS})
+find_library(ZeroMQ_STATIC_LIBRARY NAMES libzmq-static.a libzmq.a libzmq.dll.a
+             PATHS ${PC_LIBZMQ_LIBDIR} ${PC_LIBZMQ_LIBRARY_DIRS})
+
+if(ZeroMQ_LIBRARY OR ZeroMQ_STATIC_LIBRARY)
+    set(ZeroMQ_FOUND ON)
+endif()
+
+if (TARGET libzmq)
+    # avoid errors defining targets twice
+    return()
+endif()
+
+add_library(libzmq SHARED IMPORTED)
+set_property(TARGET libzmq PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${PC_LIBZMQ_INCLUDE_DIRS})
+set_property(TARGET libzmq PROPERTY IMPORTED_LOCATION ${ZeroMQ_LIBRARY})
+
+add_library(libzmq-static STATIC IMPORTED ${PC_LIBZMQ_INCLUDE_DIRS})
+set_property(TARGET libzmq-static PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${PC_LIBZMQ_INCLUDE_DIRS})
+set_property(TARGET libzmq-static PROPERTY IMPORTED_LOCATION ${ZeroMQ_STATIC_LIBRARY})