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ca8570b3b0
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Merge branch 'main' of https://gitlab.psi.ch/5505/dima
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2024-07-01 16:20:06 +02:00 |
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ba6d89d8e1
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Modified created at function to output date time and time zone
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2024-07-01 16:19:28 +02:00 |
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c074e45892
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Renamed script_name to processing_file.
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2024-07-01 16:17:25 +02:00 |
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b816e62f3b
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Made a few edits.
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2024-06-21 15:55:44 +02:00 |
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db199f81e0
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Merge branch 'main' of https://gitlab.psi.ch/5505/dima
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2024-06-21 15:42:46 +02:00 |
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6d6caf96db
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Cleared out outputs.
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2024-06-21 15:42:23 +02:00 |
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5ab775ecac
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Added a few root level metadata names and definitions
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2024-06-21 15:40:38 +02:00 |
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cedfe614e7
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Implemented input argument to enable append information to exisintg attributes, which must take the values of either strings or lists.
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2024-06-20 15:32:33 +02:00 |
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106795ae59
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Added a few lines to detect the existence of the file and change the file mode from 'w' to 'a' based on that information.
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2024-06-20 09:03:47 +02:00 |
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498a51cbc6
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Updated function to add project level metadata at the root group of the hdf5 file.
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2024-06-19 18:31:11 +02:00 |
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06c5c6d84b
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Incorporated method to MetadataHarvester class to collect project level metadata.
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2024-06-19 18:30:02 +02:00 |
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04558e7785
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Added code to parse dict attributes.
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2024-06-18 14:42:51 +02:00 |
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a6868d985d
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Fixed bug regarding datetime to str column conversion in dataframe by using .map(srt) (element wise operation) as opposed to .apply(str)
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2024-06-18 09:21:46 +02:00 |
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b66dc11a62
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Replaced applymap to .apply because the former is being depricated
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2024-06-17 13:47:54 +02:00 |
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ed1641af55
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Created function to save dataframes with annotations in hdf5 format
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2024-06-17 13:36:05 +02:00 |
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0eba80db41
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Added metadata printer method and rewrote slightly a few class terms.
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2024-06-17 08:44:44 +02:00 |
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c68e800967
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Incorporated dataframe_to_np_structured_array(df: pd.DataFrame) from another module.
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2024-06-16 18:39:30 +02:00 |
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e4de4edf28
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Incorporated dataframe_to_np_structured_array(df: pd.DataFrame) from another module.
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2024-06-16 18:26:12 +02:00 |
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2d4ecec806
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Moved dataframe_to_np_structured_array(df: pd.DataFrame) to src/g5505_utils.py. This is a more generic function that can be used more broadly accross modules.
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2024-06-16 18:25:08 +02:00 |
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6f5c49dc64
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Removed lenthy example.
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2024-06-13 16:03:04 +02:00 |
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a301d42ad5
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Replaced add_data_level_info to add_dataset.
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2024-06-13 16:01:27 +02:00 |
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0fb14b7c6c
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Developed a metadata harvesting object to facilitate metadata collection throught the code.
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2024-06-13 15:47:02 +02:00 |
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f43d86e729
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Modified a few variable values in yaml files so that they are within expected values.
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2024-06-13 15:45:39 +02:00 |
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9ab9aa49c4
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Abstracted a code snippet from def create_hdf5_file_from_filesystem_path(..) as transfer_file_dict_to_hdf5() so that it can be reusable.
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2024-06-13 15:44:01 +02:00 |
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cbca94390f
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Modified hardcoded paths to adapt with respect to the parent directory
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2024-06-11 17:30:58 +02:00 |
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e7ed6145f0
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Implemented a data extraction module to access data from an hdf5 file in the form of dataframes.
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2024-06-11 10:38:04 +02:00 |
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a410bde23e
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Removed data table split into categorical and numerical variables and numering is only introduce to disambiguate repeated columns.
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2024-06-10 16:18:51 +02:00 |
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1ec7ad76ff
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Removed additional numbering from some intrument specifications. These are now only added if the column names are ambigous.
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2024-06-10 16:14:13 +02:00 |
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726e9b3503
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Fixed bug in the case where data_integration_mode = 'collection'.
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2024-06-07 16:45:00 +02:00 |
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dba5bc9ea7
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Updated instrument names from ICAD/HONO and ICAD/NO2 to HONO and NO2.
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2024-06-07 16:41:41 +02:00 |
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197ad0288a
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Updated file reader and data integration with datastart and dataend properties.
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2024-06-04 13:37:20 +02:00 |
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9dcc757acc
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renamed folder src/instrument_descriptions/ to src/intruments/ and moved text_data_sources.yaml in there.
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2024-06-04 10:54:09 +02:00 |
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a6ddb24eeb
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Added .strip to column names to remove unwanted characters (\r|\t|\n) and included units description to timestamps.
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2024-06-04 09:57:37 +02:00 |
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fa2990527e
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Simplified and documented parse_attribute function.
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2024-06-04 09:51:12 +02:00 |
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014bd14fcd
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Modified temperature units from °C to Celcius for simpler string encoding. It seems ascii codec cannot encode such a character
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2024-06-04 09:44:09 +02:00 |
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385267a98f
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Updated treemap visualization to select only root metadata, which is of string type.
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2024-06-03 14:17:42 +02:00 |
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560481610c
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Updated root metadata display in treemaps
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2024-06-02 16:43:54 +02:00 |
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c74b6c1a91
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Updated instrument attributes with datetime_format and desired_format.
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2024-06-02 16:14:30 +02:00 |
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1054367f12
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Modified annotate_root_dir function.
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2024-06-02 16:02:48 +02:00 |
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d335836a7d
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Updated reader to standardize timestamps to a desired format when possible. The desired format is set in text_data_sources.yaml.
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2024-06-02 15:59:01 +02:00 |
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69f3857936
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Implemented functions for data extraction from hdf5 files.
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2024-05-31 12:39:10 +02:00 |
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e6de1ff55d
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Incorporated jupyter notebook of simple example metadata annotation workflow.
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2024-05-30 12:24:12 +02:00 |
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4de7834a91
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Updated readme file
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2024-05-30 12:21:17 +02:00 |
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76bffc6afe
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Updated notebook documentation and included an example metadata annotation notebook.
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2024-05-30 12:20:34 +02:00 |
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a0318681be
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Removed html file no longer useful.
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2024-05-30 12:18:28 +02:00 |
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922bb3ca64
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Updated YAML config file parsing logic to account for changes in config file description.
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2024-05-30 12:16:54 +02:00 |
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7f423ccc6f
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Decomposed experiment_data into experiment_startdate and experiment_enddate.
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2024-05-30 12:15:49 +02:00 |
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3a9aede909
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Made def third_update_hdf5_file_with_review more modular by separating data update and git operations, resulting new functions that can be reused in less restrictive matadata annotation contexts.
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2024-05-29 15:26:48 +02:00 |
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ef7c6c9efb
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Implemented a git operations module for automated git ops, based on subprocess.
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2024-05-29 15:17:09 +02:00 |
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146981379f
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Updated readme file.
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2024-05-29 11:24:46 +02:00 |
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