Commit Graph

263 Commits

Author SHA1 Message Date
87b256d93e Updated create_hdf5_file.py with input, enabling either botton-up and top-down construction of group hierarchies. So, far, implementation works for top-down construction where group hierarchies can be of any depth and defined by categorical columns. 2023-10-26 14:44:53 +02:00
d95a08caaa Implemented partially validation of group hierarchy input param. It needs to be extended to deeper group hierarchies and perhaps output nonconforming lowerlevel groups. 2023-10-20 16:56:27 +02:00
7eb1686d1f Modified creat_hdf5_file to admit group_by_list of functions that will be used to create group hierarchy. 2023-10-19 16:57:33 +02:00
7ff1d8d09b Implemented package to interface openbis with python and upload hdf5 file data from Thorsten data into openbis. 2023-10-18 17:00:01 +02:00
54ac1d5463 Modified to find input data inside newly added input_files folder. 2023-10-10 09:02:45 +02:00
0248ca3c6e Added a new function read_hdf5_as_dataframe_v2 which supports hdf5 files without datasets and replaced the dataframe construction procedure to a column wise basis. 2023-10-10 09:00:41 +02:00
d42ddd6ff0 Removed Filelist.h5, which is now relocated in input_files folder 2023-10-10 08:52:32 +02:00
736f0ba915 Added folders input_files and logs to store input data (hdf5 files) and resulting logs. 2023-10-10 08:51:10 +02:00
9bce95663c Reran jupyter notebook. 2023-08-22 15:11:25 +02:00
ebf41763df Reran jupyter notebook. 2023-08-22 15:09:59 +02:00
e3225fff4b Reduced a few lines of code and documented plot_spectra function. 2023-08-22 15:09:18 +02:00
3e9a26f147 Initial commit. hdf5_lib.py contains functions to read hdf5 file as dataframe. and napp_plotlib contains functions to plot image and spectra. jupyter notebook included to illustrate functions. 2023-08-22 14:28:27 +02:00
8c4851ffea Initial commit 2023-08-22 14:22:31 +02:00