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base: H5hut/src:H5Part-1.6.0
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H5hut/src:master H5hut/src:int8 H5hut/src:1.99.x H5hut/src:1.99 H5hut/src:1.6 H5hut/src:1.4 H5hut/src:1.2 H5hut/src:1.0
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compare: H5hut/src:1.99.8
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H5hut/src:master H5hut/src:int8 H5hut/src:1.99.x H5hut/src:1.99 H5hut/src:1.6 H5hut/src:1.4 H5hut/src:1.2 H5hut/src:1.0
H5hut/src:H5hut-2.0.0rc7 H5hut/src:H5hut-2.0.0rc6 H5hut/src:H5hut-2.0.0rc5 H5hut/src:H5hut-2.0.0rc4 H5hut/src:H5hut-2.0.0rc1 H5hut/src:H5hut-2.0.0rc3 H5hut/src:H5hut-2.0.0rc2 H5hut/src:1.99.13 H5hut/src:1.99.12 H5hut/src:1.99.11 H5hut/src:1.99.10 H5hut/src:1.99.9 H5hut/src:1.99.8 H5hut/src:1.99.7 H5hut/src:H5Part-1.6.5 H5hut/src:1.99.6 H5hut/src:H5Part-1.6.4 H5hut/src:1.99.5 H5hut/src:H5Part-1.6.3 H5hut/src:1.99.4 H5hut/src:1.99.3 H5hut/src:1.99.2 H5hut/src:H5hut-1.99.1 H5hut/src:1.99.0 H5hut/src:H5Part-1.6.2 H5hut/src:H5Part-1.6.1 H5hut/src:H5Part-1.6.0 H5hut/src:H5Part-1.4 H5hut/src:H5Part-1.3.3 H5hut/src:H5Part-1.3.2 H5hut/src:H5Part-1.3.1

639 Commits
H5Part-1.6.0 .. 1.99.8

Author SHA1 Message Date
gsell 556fe9b8a6 Fortran API fixed 2011-11-02 17:23:31 +00:00
gsell bc84ce205a API to retrieve local neighbor indicies of an element added 2011-10-27 12:16:24 +00:00
gsell c45c1e9bb9 trimesh_2gnuplot added to test/H5Fed 2011-10-27 11:46:07 +00:00
gsell 4085a1c30c ignore list modified 2011-10-27 11:45:14 +00:00
gsell ce8b6dae77 bugfix in H5OpenFile() 2011-10-27 11:43:14 +00:00
gsell 29888601b8 bugfix in open with O_CREAT 2011-10-27 11:42:47 +00:00
gsell d82e7143ed branch 1.99 created 2011-10-27 11:35:06 +00:00
gsell 3569a12376 link problem on Linux fixed 2011-10-05 08:44:02 +00:00
gsell 4a33578c8f changes merged from r3753 2011-09-09 10:36:52 +00:00
gsell 72920b2cbd define PARALLEL_IO only if H5_HAVE_PARALLEL is defined and but not PARALLEL_IO 2011-09-08 12:24:22 +00:00
gsell 9de08ab78f define PARALLEL_IO if H5_HAVE_PARALLEL is defined 2011-09-08 12:20:47 +00:00
gsell cba9c17dff don't output MPI_Comm and MPI_Info params in debug output to avoid problems with different MPI implementations 2011-09-08 12:19:22 +00:00
gsell 318bf9140a alloc cleared memory for mesh structure 2011-09-08 11:36:48 +00:00
gsell 431782f85e format error fixed in debug output 2011-09-08 11:34:57 +00:00
gsell 99464ac39d several bugfixes in parallel code 2011-08-23 15:13:22 +00:00
gsell 0d37e27db2 missing type cast added 2011-08-23 15:11:01 +00:00
gsell dafcdc6879 merge errors fixed 2011-08-23 15:08:50 +00:00
gsell ff35718467 print used C++ compiler in summary 2011-08-23 07:59:14 +00:00
gsell 8860a72e65 changesets -3740 merged from sandbox 2011-08-18 16:19:28 +00:00
gsell aacd90c1cc bugfix 2011-08-16 09:16:34 +00:00
gsell 060f4b0029 changesets 3713,3714,3725 merged from sandbox 2011-08-15 15:04:14 +00:00
gsell c3f6a51426 functions to flush data to disk added 2011-08-12 14:24:19 +00:00
adelmann 5a31c58c41 cleanup 2011-08-12 11:18:33 +00:00
adelmann 63bfd8a516 cleanup 2011-08-12 11:16:41 +00:00
adelmann 826ec5491c rewriting for H5hut 2011-08-12 08:48:43 +00:00
adelmann b1e8e15b90 fix more stuff 2011-08-12 07:05:54 +00:00
adelmann 8862acd04f fixes ... 2011-08-11 15:51:02 +00:00
gsell 2b3a3fdafb ignore list updated 2011-08-11 15:23:48 +00:00
gsell a29d3c894a flush step after writing dataset 2011-08-11 15:04:14 +00:00
gsell f9710938f2 target 'clean-local' added 2011-08-11 15:02:33 +00:00
adelmann 33f3e8a24d more tools must later go to OPAL 2011-08-11 15:01:16 +00:00
adelmann 95903d2711 fix tools makefile 2011-08-11 14:31:55 +00:00
adelmann e23aeea0ef remove dbg output 2011-08-11 11:24:26 +00:00
gsell 7dc3981621 install static libs in src/lib via all-local rule 2011-08-05 14:54:49 +00:00
gsell 2954499875 libtoolize naming problem on Mac OS X fixed 2011-08-05 14:54:04 +00:00
gsell 339c86404c fix problems with autogen.sh on ScientificLinux 5 and new autotools 2011-08-04 11:22:50 +00:00
gsell d2a55f9a90 missing error handling fixed 2011-08-02 14:51:44 +00:00
gsell 92d0cc5ae5 write zero-particle bug fixed 2011-08-02 13:34:10 +00:00
Marc Howison 329a72fa82 1.6.3 release 2011-07-25 14:09:43 +00:00
gsell 2921aa87d5 adaptions for libtools on Mac, work around to use env.varibales removed 2011-07-19 13:10:36 +00:00
Marc Howison be103949eb new build system for both H5hut and H5Part; preparing 1.6.3 release of H5Part 2011-07-16 18:30:25 +00:00
gsell df552265bc debug output added to MPI wrapper and some small fixes 2011-07-08 14:52:14 +00:00
gsell ffe7b30b02 Oops 2011-07-01 14:34:50 +00:00
gsell 154c03bbbe missing 'static inline' fixed 2011-07-01 14:28:16 +00:00
gsell 259e4b1ff0 implemented NDEBUG for __FUNC_ARGSx and __FUNC_RETURN 2011-06-30 14:41:53 +00:00
gsell a4f95fa4db implement all private functions as inline 2011-06-30 14:40:35 +00:00
gsell d8c84a3bff bugfix in read function 2011-06-30 09:13:52 +00:00
gsell 30cf451716 some adaptions to coding style 2011-06-30 09:12:56 +00:00
gsell c1eadeb678 issues with Intel C 11.1 fixed 2011-06-24 10:10:20 +00:00
gsell 8030a7246b H5Fed C-API inlined 2011-06-17 15:03:14 +00:00
gsell 81f7f7716f smal docu change 2011-06-17 15:02:35 +00:00
gsell 7baf635bef bugfixes 2011-06-17 13:04:36 +00:00
gsell 87eae5c238 functions in 'C/H5Fed.c' are no inline 2011-06-17 13:03:43 +00:00
gsell 562f9ac3e3 set absolute path in CC and CXX 2011-06-16 14:06:51 +00:00
gsell cfc13be3af add function to output coordinates of all elements 2011-06-16 14:05:07 +00:00
gsell ade15f37ca obsolete file 'h5t_errorhandling.c' removed 2011-06-15 13:30:11 +00:00
gsell ad6bcf73d7 include mpi.h on paralell I/O 2011-06-15 13:29:27 +00:00
gsell 601bebc183 readjust to API changes 2011-05-25 08:21:16 +00:00
gsell ad7c1cf026 test for mpicc/mpicxx in AC_PROG_CC if parallel is enabled 2011-05-25 08:16:01 +00:00
gsell 375132fac9 pre-refine code fixed 2011-05-24 15:45:37 +00:00
gsell b47448390e extern "C" wrapper added 2011-05-24 15:30:03 +00:00
gsell 91eeefb9d2 more warnings fixed 2011-05-24 15:28:32 +00:00
gsell 9bdff77a00 use mpicc/mpicxx in AC_PROG_{CC,CXX} if --enable-parallel is set 2011-05-24 14:23:33 +00:00
gsell bb5bbb4216 several warnings with Intel-C/GCC -Wall fixed 2011-05-24 12:59:35 +00:00
gsell 2a2c461f71 several format warnings fixed 2011-05-23 14:51:55 +00:00
gsell 87feccada8 several format warnings fixed 2011-05-23 14:50:00 +00:00
gsell ed913eaa0f experimental code added fot adding named triangle meshes 2011-05-23 14:34:57 +00:00
gsell 0b94f58cc9 proc rank is now printed by h5priv_vprintf 2011-05-23 14:33:41 +00:00
gsell 4818fa0efb 'mesh_label' removed from 'struct h5_file' 2011-05-23 14:31:37 +00:00
gsell 5b6e145e87 pre-refine implemented as mesh specific function 2011-05-20 14:02:05 +00:00
gsell 22c45153a8 bugfixes 2011-05-20 14:01:00 +00:00
gsell a7b9621850 h5t_openclose* renamed to h5t_model*, some functions moved from file to files 2011-05-20 13:01:14 +00:00
gsell f79b06ef4d h5t_const.c and h5t_const_private.h removed 2011-05-20 11:55:19 +00:00
gsell 1a8433681f API changed: now we have explicit function to open/add meshes of specific type 2011-05-20 11:53:49 +00:00
gsell 0dbb8f22e3 dedicated function to add triangle and tetrahedral meshes added 2011-05-13 11:04:57 +00:00
gsell 532da439a6 svn:ignore edited 2011-05-13 11:02:43 +00:00
gsell 7075ab7712 'h5_attach_test.c' added 2011-05-13 11:01:37 +00:00
gsell 5bd6ab7109 svn:ignore edited 2011-05-13 10:59:04 +00:00
gsell f3517f3775 code added for parallel compilation 2011-05-13 10:53:40 +00:00
Marc Howison 30ea30603e created code generator for H5_attribs_F.c 2011-05-06 13:28:37 +00:00
Marc Howison 1f8f6cddde updated Fortran interfacae to use new macros 2011-05-06 13:28:02 +00:00
Marc Howison 11fd3c10c5 updated h5_lustre.c to user new macros; changed library targets to ../lib/lib*.a to avoid the mv and mkdir hacks in Makefile.am; fixed problem in h5u_test with H5PartSetViewIndices; OPEN BUG with h5u_test for >1 MPI task (strange pthread setfault?) 2011-05-05 17:58:05 +00:00
gsell c676222a03 output of debug information added to all private API functions 2011-05-05 07:36:47 +00:00
gsell 09cad98413 src/lib added 2011-05-05 07:29:19 +00:00
gsell 53b8850329 output of debug information added to all API and core-API functions 2011-05-03 09:30:30 +00:00
gsell 808d489564 fixed bug in h5_get_num_steps() 2011-04-18 12:30:40 +00:00
gsell ecb23b66dd libH5hutC.a added to ignore list 2011-04-07 11:05:22 +00:00
gsell 64de405353 libH5hut.a added to ignore list 2011-04-07 11:04:45 +00:00
gsell 0cce74dadb H5PartTest.cc adapted to H5hut API 2 2011-04-01 14:33:07 +00:00
gsell aa3462472d added include of stdarg.h 2011-04-01 14:29:43 +00:00
gsell af3601d2d9 test/H5Part/Makefile added to AC_CONFIG_FILES() 2011-04-01 14:27:56 +00:00
gsell 407bbe4d0c implementation of attachments continued 2011-03-31 15:30:16 +00:00
gsell 6661eca765 added extern "C" wrapper for C++ 2011-03-25 14:53:31 +00:00
gsell 1000240374 work in progress 2011-03-25 14:51:46 +00:00
gsell cea4a22f9b fixed warnings 2011-03-25 14:49:46 +00:00
gsell e4e78f713c attachment implementation 2011-03-24 09:07:12 +00:00
gsell 4b0d303ceb - h5_attachments.c added 2011-03-11 16:12:17 +00:00
gsell 4d348dbe0d - function hdf5_get_dataset_info_by_name() added 
- args of function hdf5_get_npoints_of_dataset_by_name() are now const
 2011-03-11 16:11:23 +00:00
gsell 745e2229e7 use function hdf5_get_datasetinfo_by_idx() in h5u_get_dataset_info() 2011-03-11 15:29:29 +00:00
gsell b0c321dd54 - renamed functions: 
h5_get_num_hdf5_groups() -> hdf5_get_num_groups()
  h5_get_num_hdf5_groups_matching_prefix() -> hdf5_get_num_groups_matching_prefix()
  h5_get_hdf5_groupname_by_idx() -> h5_get_hdf5_groupname_by_idx()
  h5_get_hdf5_groupname_by_idx() -> hdf5_get_num_datasets()
  h5_get_hdf5_datasetname_by_idx() -> hdf5_get_name_of_dataset_by_idx()
  h5_get_objname() -> hdf5_get_objname()
- added functions:
  hdf5_get_dataset_info_by_idx()
- changed args:
  h5_get_dataset_type(): file handle removed
 2011-03-11 15:08:02 +00:00
gsell a8dd08c5bf - added functions: H5Block3d{G,S}etFieldOrigin(), H5Block3d{G,S}etSpacing() 2011-02-24 16:34:51 +00:00
gsell 427c550993 - fixes for Intel C on Linux 2011-02-24 09:59:15 +00:00
gsell d3c09a61b2 - removed "h5_file_t f" argument where we don't need need (but not in API) 
- removed arguments from macros h5_error_internal() h5_error_not_implemented()
- some coding style issues fixed
 2011-02-24 08:18:45 +00:00
gsell 7e93a7ab2f - improved debugging 
- abort error handler now terminates all processes in MPI_COMM_WORLD
- some formating issues fixed
- some minor (cosmetic) changes
 2011-02-18 10:33:44 +00:00
gsell 05772223f5 - use specific data types for local IDs and indices (instead of h5_id_t) 2011-02-03 10:51:28 +00:00
gsell 2bc7cc1024 - local IDs and indices are now 32bit (in the future it will be possible 
to compile the library with 32bit or 64bit IDs/indices.
- bugfixes
 2011-02-03 10:40:40 +00:00
gsell d0ce31c8c0 - more generic private functions added to attrib API 2011-02-03 09:17:05 +00:00
gsell ea09184d53 output entities as n-tuple of vertex indices, not their ID 2011-01-21 13:15:13 +00:00
gsell eb5c31e80f build of trimesh_adjacencies added 2011-01-21 10:33:01 +00:00
gsell 607c084ac4 added 2011-01-21 10:32:19 +00:00
gsell b9eed5630c - reference elements revisited (extensions, bugfixes...) 
- adjacency computation reviewed, bug fixes
- some reformating and refactoring
 2011-01-21 10:27:48 +00:00
gsell 212c9b86a1 label in macro H5_API_RETURN renamed 2011-01-21 10:23:36 +00:00
gsell f6eeeca9b0 label in macro H5_API_RETURN renamed 2011-01-21 10:21:37 +00:00
gsell 54aaf846e7 - hash functions reviewed and optimzed 2011-01-06 12:05:20 +00:00
gsell a6ef33d66c - label "exit" renamed to "done" (as in hdf5) 2011-01-06 12:04:03 +00:00
gsell 4fdfc6e4dc - add -std=c99 to CFLAGS if compiler is gcc 
- bugfix in AIX test
 2011-01-06 12:02:40 +00:00
gsell 27c19efe59 bugfixes 2011-01-04 08:32:14 +00:00
gsell 12a2c7ef27 ID-list structure changed 2011-01-03 14:48:05 +00:00
gsell 6b4a664546 hcompute_loc_id_keyed() optimized 2011-01-03 14:45:53 +00:00
gsell f59fd40b34 'h5priv_alloc_idlist_items()' renamed to 'alloc_idlist_items()' 2010-12-16 15:27:39 +00:00
gsell db5fd1b01e 'h5priv_free_idlist_items()' removed from priv core API 2010-12-16 15:24:35 +00:00
gsell 81b488a8d2 changed 'marked_entities' to ptr type 2010-12-16 15:16:20 +00:00
gsell d1f6efa8c0 - missing memory release for te and td structure implemented 2010-12-16 15:09:28 +00:00
gsell ec8258e902 'num_levels', 'cur_level' and related functions refactored to 'num_leaf_levels' etc 2010-12-16 14:25:15 +00:00
gsell cb35755cf5 - refactored 'num_elems_on_level' to 'num_elems_on_leaf_level' 
- introduced new refinement level
 2010-12-16 12:25:28 +00:00
gsell b8a7e0686d - introduced macros for enter and return from API functions 
- iterators revisited
 2010-12-16 10:37:33 +00:00
gsell 2c865deb88 refactor memory allocation function as public core functions 2010-12-15 14:12:53 +00:00
gsell 912b776b83 core iterator API refactored 2010-12-15 10:14:31 +00:00
gsell aec44637d7 trimesh_write_dunetest added 2010-12-14 10:35:51 +00:00
gsell 8d21236264 - boundary mesh iterators implemented 
- #pragma replaced with macro
- several minor changes
 2010-12-14 10:24:33 +00:00
Christian Engwer f5ace232e8 - export h5tpriv_find_te2 via h5core/h5t_adjacencies.h 
- method is called h5t_find_te2
 2010-12-10 08:40:08 +00:00
gsell edcdd4ce0f h5b_test added to ignore list 2010-11-12 08:29:04 +00:00
gsell bd993eadf2 - boundary facets iterator added 2010-11-12 08:25:51 +00:00
gsell 0de4641ec5 - introducing types for local and globale IDs and indices 
- different structurs for local elements and stored elements in file
- interator for border facets added
 2010-11-12 08:23:00 +00:00
Marc Howison 1dd75f48e6 fixed problems with compiling on my Mac 2010-11-08 01:56:45 +00:00
gsell 6dc020da64 - introduced types for local and global indices and ID's 
- bugfixes
 2010-10-18 16:12:41 +00:00
gsell b6a5823e23 - bug fixed in write_tagset(): wrong limit in for loop 2010-09-06 15:47:51 +00:00
gsell 441915f443 - Removed some parallel tests from serial code 
- fix some warnings
 2010-09-06 15:45:47 +00:00
gsell 031cd58999 bugfixes 2010-08-25 16:32:54 +00:00
gsell de20cdd032 bugfixes 2010-08-25 16:32:35 +00:00
gsell 6d0600febf - handling of imported env.vars revised 2010-08-20 15:55:55 +00:00
gsell c47c0cfc6e - neighbor information management added to elements 
- prefix 'global' removed form global element struct
- global and local element data now have the same struct
- and several other changes
 2010-08-20 15:54:01 +00:00
gsell 21ba443bcd - new adjacency API implemented 
- some minor fixes
 2010-08-20 15:47:40 +00:00
gsell d745498f3c - use of type h5_size_t in H5Block functions 
- several fixes to get rid of warnings with icc -Wall
 2010-08-20 15:46:28 +00:00
gsell e5aa8e5703 added install-libs-local target 2010-08-20 15:42:25 +00:00
gsell 77d5f4feb8 - type casts added to printf args 
- changed to new adjacency API
 2010-08-20 15:41:07 +00:00
gsell 982bf089ac lib added to ignore list 2010-07-29 11:33:42 +00:00
gsell 0137e7ac2a use 'idx' in element structure as global index for global elements and level idx for local elements. We don't need to save the level index for globale elements and it makes no sense to store the local index of a local element. 2010-07-29 11:33:29 +00:00
gsell b0bacdc6a7 function h5t_map_global_elem_indices2local() added 2010-07-29 11:19:00 +00:00
gsell 5da74b94df some entries added to ignore list 2010-07-29 11:15:28 +00:00
Marc Howison 6568099f62 fixed errors found by regression tests: 
the H5Fed file data structure can't be created by >1 MPI task, so it is disabled in parallel mode (for now)
the H5Block3dSetHalo function was inverting the halo radii
the h5b_test wasn't writing the correct data in the halo case
 2010-07-28 21:55:00 +00:00
Marc Howison 377af10fb0 tested out packaging a tarball and compiling/install on Franklin 
fixed several issues with the build system
 2010-07-24 00:10:41 +00:00
Marc Howison 421a92630a refactored Fortran interface to use h5core calls instead of C API calls 2010-07-22 20:32:52 +00:00
gsell b920c0f9e8 - level_idx removed from element structure 
- mesh type specific read methods
 2010-07-22 20:02:48 +00:00
Marc Howison a1a90c8af0 corrections for IASDS paper 2010-07-22 18:52:40 +00:00
gsell 4a20cd715e - neighborhood informations added to elements (to be continued) 
- several name changes in struct h5t_fdata
- refactoring according changes in struct h5t_fdata
 2010-07-22 14:43:17 +00:00
gsell 56b1be9ddb define sub-dirs for src/Makefile via configure 2010-07-22 14:36:41 +00:00
gsell 3e1d5fbff0 ignore-list edited 2010-07-22 14:29:39 +00:00
gsell ff4fbc0835 ignore-list edited 2010-07-22 14:28:53 +00:00
gsell 64585bfcc2 ignore-list edited 2010-07-22 14:27:48 +00:00
gsell fb78efc6fa ignore-list edited 2010-07-22 14:27:26 +00:00
gsell 0960b906a9 ignore-list edited 2010-07-22 14:25:37 +00:00
gsell 1fd9ae1406 h5t_access_{tetm,trim}.c added to sources, h5t_XYZ_{tetm,trim}_private.h merged with h5t_XYZ_private.h 2010-07-22 12:53:14 +00:00
gsell 4ccd632e54 deleted 2010-07-22 12:39:07 +00:00
gsell 8c8de6e523 added 2010-07-22 12:06:06 +00:00
gsell b56c4246c9 reference element type renamed 2010-07-22 10:16:22 +00:00
Marc Howison 5f6808947a added h5hutcc wrapper 
updated documentation
finished merging the Fortran interface and refactoring H5Block
started an H5Block regression test
 2010-07-20 18:23:48 +00:00
Marc Howison 7ea00c38f8 Integrated H5Part regression test and fixed numerous errors that it discovered. 
Finished integrating H5Block and the Fortran interface (untested).
Started adding an H5Block regression test with a few simple tests (all pass).
Added automatic detection of stripe information on lustre, and config option to compile against lustre API.
Moved buffers for H5Block ghost zone disolving out of the file handle and into the h5b_3d_set_view function.
Fixed bug with pointers in the H5Fed file data not being initialized to NULL.
 2010-07-15 19:44:48 +00:00
Marc Howison 2c267f173a continued working on Fortran interface 2010-07-10 00:00:54 +00:00
Marc Howison 9f3fd3b053 continued merging H5Block: still some functionality missing (attribs, read, write); added H5Part regression tests; simplified several Makefile.am files and configure.ac; began merging new Fortran interface 2010-07-09 16:24:57 +00:00
gsell b2dbc55839 added 2010-07-08 10:09:06 +00:00
gsell 16738fdd6f fixed error in documentation 2010-07-08 10:08:29 +00:00
gsell 2a47df9875 removed obsolete H5PartSomeThing() declaration 2010-07-08 10:06:57 +00:00
gsell 77b1198151 h5_{s,g}et_debug_level() renamed to h5_{s,g}et_debuglevel() 2010-07-08 10:05:10 +00:00
gsell 362bb8d9a2 define ULLONG_MAX if not already defined 2010-07-06 15:17:44 +00:00
gsell c32853c3d4 h5priv_te_find() now return H5_NOK, if element not found 2010-07-02 11:54:39 +00:00
gsell 2f55e95381 typo fixed in call of H5Pset_fapl_mpiposix() 2010-07-02 08:25:13 +00:00
gsell 7a977e3cd1 leading underscore removed from static functions 2010-07-01 13:11:12 +00:00
gsell aaf37f791f typo in call of h5_get_debug_level() fixed 2010-07-01 13:01:02 +00:00
gsell fb557952e9 some type-cast added to fix Intel C warnings 2010-07-01 13:00:07 +00:00
Marc Howison e06dc187c7 added const to pass-by-value function parameters; worked more to attributes API 2010-06-29 15:27:25 +00:00
Marc Howison fa806cf273 forgot to add a file 2010-06-26 17:31:45 +00:00
Marc Howison 8783ac2cf2 first part of LBL merge: h5core and H5Part 2010-06-26 17:29:37 +00:00
gsell 6ea921eba4 - append Float64 to H5Block read/write function 
- function H5Block3dReadScalarField() removed
- forgoten refactoring of h5priv_mpi_allgather() fixed
 2010-06-24 13:45:53 +00:00
gsell 6ab3025c9f define ERR_XYZ as macro 2010-06-24 13:42:18 +00:00
gsell d76db8511c 2010-06-24 13:38:02 +00:00
gsell 0c5dd6cff3 more binaries added to ignore list 2010-06-24 13:36:23 +00:00
gsell c313f3da2a refactoring of H5hut types 2010-06-24 13:35:24 +00:00
gsell ff5aaf08a5 more binaries added to ignore list 2010-06-24 13:34:05 +00:00
gsell 04d8d30ed0 refactoring of H5hut types 2010-06-24 13:33:16 +00:00
gsell 06caa6dcb1 2010-06-10 21:00:25 +00:00
gsell 816b81a1c1 2010-06-10 15:46:08 +00:00
gsell 3a87865fc3 rename several variables, functions and struct members to make clear that deal with indices and not IDs 2010-05-28 15:55:39 +00:00
gsell 15455ad905 several files renamed to more consistent names 2010-05-28 14:23:57 +00:00
gsell 2f30c9fcb8 - update of internal data structures reviewed 2010-05-28 14:09:08 +00:00
gsell cb37690b83 renamed 'h5t_open_level()' to 'h5t_set_level()' 2010-05-28 09:43:00 +00:00
gsell 93c43c7cdd renamed 'h5t_open_level()' to 'h5t_set_level()' 2010-05-28 09:42:52 +00:00
gsell 47a7bab09f adapted to coding style 2010-05-28 09:39:31 +00:00
gsell 052041715d renamed 'rebuild_internal_structs()' to 'update_internal_structs()' 2010-05-28 09:12:40 +00:00
gsell d526ebb484 underscore prefix removed from static functions 2010-05-28 07:50:07 +00:00
gsell 22e45ec997 adapted to coding style 2010-05-28 07:43:38 +00:00
gsell 27763974e1 type fixed 2010-05-27 14:07:37 +00:00
gsell 6a9398ed19 adapted to coding style 2010-05-27 14:06:09 +00:00
gsell 2755e69636 adapted to coding style 2010-05-27 14:05:45 +00:00
gsell 010a605a3b removed, replacement functions are in h5_hdf5.c 2010-05-27 13:40:46 +00:00
gsell 4e7eb421c1 - obsolete hdf5_xyz() functions replaced 2010-05-27 13:40:02 +00:00
gsell 45637df399 - obsolete hdf5_xyz() functions replaced 
- adapted to coding style
 2010-05-27 13:38:57 +00:00
gsell f8f1590df8 adapted to coding style 2010-05-27 13:27:30 +00:00
gsell d3dc68d045 adapted to coding style 2010-05-27 13:26:51 +00:00
gsell 0ce6476aa6 adapted to coding style 2010-05-27 13:26:33 +00:00
gsell bd4908eeba adapted to coding style 2010-05-27 13:26:22 +00:00
gsell 01c729b290 adapted to coding style 2010-05-27 13:25:30 +00:00
gsell 7d91ce9b73 adapted to coding style 2010-05-27 13:25:05 +00:00
gsell 10f406da47 adapted to coding style 2010-05-27 13:24:37 +00:00
gsell e32b897b7a adapted to coding style 2010-05-27 13:23:40 +00:00
gsell e1767b3189 adapted to coding style 2010-05-27 13:15:30 +00:00
gsell eed6021c71 adapted to coding style 2010-05-27 13:14:40 +00:00
gsell eef07ed9ea adapted to coding style 2010-05-27 13:14:18 +00:00
gsell ff91c08950 adapted to coding style 2010-05-27 13:13:50 +00:00
gsell 3d2a804c63 adapted to coding style 2010-05-27 13:13:37 +00:00
gsell 3d1569ab01 adapted to coding style 2010-05-27 13:12:20 +00:00
gsell d084b153d8 adapted to coding style 2010-05-27 13:11:44 +00:00
gsell c1137a6e32 adapted to coding style 2010-05-27 13:10:43 +00:00
gsell 6db56d9f5b cleanup #include's 2010-05-21 13:04:58 +00:00
gsell 5d94a6ccd8 adapted to coding style 2010-05-21 11:59:11 +00:00
gsell 7e6e819ad9 - DUNE-style refinement implemented 2010-05-21 10:14:42 +00:00
gsell 4243deb2c4 ignore list edited 2010-05-19 07:37:35 +00:00
gsell 493ca7ab49 - use abort error handler 
- polishing
- adapted to coding style
 2010-05-19 07:35:02 +00:00
gsell 5ce0374892 h5t_close_mesh() is a public API function now 2010-05-19 07:31:45 +00:00
gsell 6bdf9d2117 h5t_openclose_private.h added to EXTRA_HEADERS 2010-05-19 07:30:44 +00:00
gsell 7010c7b864 declaration of private open/close function moved to this file 2010-05-19 07:29:34 +00:00
gsell c6cd77b523 - files added 
- implement traversal function with iterators
 2010-05-12 20:32:49 +00:00
gsell 538b0989eb - iterators implemented/debugged 
- traversal functions with iterators debugged for triangle meshes
 2010-05-12 19:51:57 +00:00
gsell 1c41ca12ce update ignore prop 2010-05-06 11:50:35 +00:00
gsell 0edf356fb4 - Use new travere/iterate functions 
- Use new H5FedGetVertexIndicesOfXXX() functions
 2010-05-06 11:49:38 +00:00
gsell bbc480fc80 - trimesh_read/_write added to Makefile.am 2010-05-06 11:47:56 +00:00
gsell f9111871fe - H5Fed_map.[ch] removed 2010-05-06 11:45:17 +00:00
gsell dda3cb98a4 - H5FedGetVertexIndicesOfEntity() added 
- H5FedLMapXXX() renamed to H5FedGetVertexIndicesOfXXX
- function in H5Fed_map.c moved to H5Fed_retrieve.c
 2010-05-06 11:42:13 +00:00
gsell 339c8b95db update ignore prop 2010-05-03 13:21:53 +00:00
gsell bde5ef3624 - adapted to new iterate/traverse functions 2010-05-03 13:19:37 +00:00
gsell 8a5afeae31 - argument types for partition definition changed from 'h5_int64_t' to 'h5_size_t' 2010-05-03 13:18:42 +00:00
gsell 24565cab22 - '--enable-64' removed 
- bug in CFLAGS handling fixed
 2010-05-03 13:16:30 +00:00
gsell c2539b6120 fixed wrong #include for reference elements 2010-05-03 07:27:38 +00:00
gsell e013cc9c31 - traverse function replaced with iterator functions 2010-05-02 21:25:22 +00:00
gsell fa2fdf2640 - rename h5t_get_local_vids_of_xxx() to h5t_get_vertex_indices_of_xxx() 2010-05-02 21:24:41 +00:00
gsell d8ba18d662 H5Fed_retrieve.c added 2010-05-02 21:23:14 +00:00
gsell 920a661d37 - traverse function replaced with iterator functions 2010-05-02 21:22:16 +00:00
gsell c72e04b302 added 2010-05-02 21:21:20 +00:00
gsell c9a9ebfc96 - h5t_get_vertex_indices_of_entity() added 
- specific function declaration revised
 2010-05-02 21:20:22 +00:00
gsell b0c436cb14 - typo in include of stdarg.h fixed 
- H5_OID_MAX add to enum h5_oid
 2010-05-02 21:18:00 +00:00
gsell dd21d78ce4 - definition of h5tpriv_get_face_id() renamed to h5tpriv_get_face_idx() 2010-05-02 21:16:41 +00:00
gsell 5c9a6fe9c2 - traverse function replaced with iterator functions 2010-05-02 21:16:06 +00:00
gsell 20e3399294 - definition of h5_error_not_implemented() and h5_error_internal() moved from private header 2010-05-02 21:14:53 +00:00
gsell 2375429556 reference elemets introduced 2010-05-02 21:12:57 +00:00
gsell 39df27c36a - traverse function replaced with iterator functions 2010-05-02 21:09:42 +00:00
gsell 5e8147a575 - change function name: h5tpriv_get_face_id() -> h5tpriv_get_face_idx() 2010-05-02 21:08:43 +00:00
gsell 60a67092ae - use reference element to determine number of vertices 
- return an internal error if buffer to small
 2010-05-02 21:07:12 +00:00
gsell 061778a800 - adaptions to changed h5t_find/search_xxx() functions 
- use of reference elements where reasonable
 2010-05-02 21:04:18 +00:00
gsell cdaf8ce6c9 - traverse function replaced with new iterator functions 2010-05-02 21:01:08 +00:00
gsell a35b845a80 - type of return argument changed to h5_idlist_t in h5t_find/search_xxx functions 
- h5tpriv_get_face_id() renamed to h5tpriv_get_face_idx()
- face_id renamed to face_idx
 2010-05-02 20:59:44 +00:00
gsell 4005b30e8e get number of vertices from reference element 2010-05-02 20:53:16 +00:00
gsell 88e146442c bugfix in function h5priv_hresize(), some comments added 2010-05-02 20:52:08 +00:00
gsell 612bc12796 definition of struct h5t_entity_iterator moved to other header file, build-in iterators removed, ptr to reference element added to struct h5t_fdata 2010-05-02 20:49:00 +00:00
gsell 8960d5c365 definition of h5_error_not_implemented() and h5_error_internal() to public header file 2010-05-02 20:45:52 +00:00
gsell 8a3840baae change return type of result to h5_id_list in h5t_find_xxx and h5t_search_xxx , use face_idx and elem_idx for face and element indices 2010-05-02 20:44:17 +00:00
gsell e44c3b5857 change return type of result to h5_id_list in h5t_find_xxx and h5t_search_xxx , use face_idx and elem_idx for face and element indices 2010-05-02 20:42:02 +00:00
gsell 55d81d3afa include of stdargs.h added 2010-04-28 15:35:15 +00:00
gsell c02c5f3666 prepended underscore removed from static function names 2010-04-23 09:13:59 +00:00
gsell 9be719e66d @H5P_LIB_LOC@ replaced with ${abs_top_builddir} 2010-04-22 15:38:48 +00:00
gsell a7e4cacd3c H5P_LIB_LOC removed, H5PartTest removed from TPTARGET if not parallel 2010-04-22 15:37:34 +00:00
gsell be01b8fa82 update ignore prop 2010-04-22 15:36:11 +00:00
gsell ab139ea9dc update ignore prop 2010-04-22 15:35:13 +00:00
gsell 46202cf1c3 @H5P_LIB_LOC@ replaced with ${abs_top_builddir} 2010-04-22 15:34:13 +00:00
gsell 2bfcfcac51 update ignore prop 2010-04-22 15:33:20 +00:00
gsell ecc22ea489 @H5P_LIB_LOC@ replaced with ${abs_top_builddir}, libstdc++ added to target H5test 2010-04-22 15:32:35 +00:00
gsell 5168a7ea04 change 'all' rule to build library in ../lib 2010-04-22 14:48:10 +00:00
gsell f2d3a7bbaa add 'all' rule to copy library to ../lib 2010-04-22 14:42:36 +00:00
gsell 3875c7c7ff Makefile.am for src dir added 2010-04-22 14:12:18 +00:00
gsell 239b2b632f update ignore prop 2010-04-22 14:09:37 +00:00
gsell dc3df38658 move license/copyright to file COPYING 2010-04-22 14:07:03 +00:00
gsell 5e9d7f56c1 update ignore prop 2010-04-22 14:01:52 +00:00
gsell 9b0c49ca52 path adapted 2010-04-22 14:00:56 +00:00
gsell 08fe1e8dfc update ignore prop 2010-04-22 13:59:13 +00:00
gsell f7ca3bdac5 path adapted 2010-04-22 13:58:17 +00:00
gsell bf5d529160 moved 2010-04-22 13:17:47 +00:00
gsell 63287b8fb6 header file renamed 2010-04-22 13:15:00 +00:00
gsell 6c9b34c9d5 update ignore prop 2010-04-22 12:08:27 +00:00
gsell 149f50628c rename h5_core to h5core 2010-04-22 12:07:19 +00:00
gsell f61185ddc4 public header files moved to ../include 2010-04-22 11:50:41 +00:00
gsell d24ae27e47 public header files moved to ../include/h5core 2010-04-22 11:49:38 +00:00
gsell 17426706fc paths adapted 2010-04-22 11:48:59 +00:00
gsell 0399e82580 moved 2010-04-22 11:47:17 +00:00
gsell 3b587676ef moved 2010-04-22 11:47:04 +00:00
gsell 7db65fab6e reorganize language bindings 2010-04-22 11:07:35 +00:00
gsell 50ba923191 reorganize language bindings 2010-04-22 11:06:39 +00:00
gsell 33f6fca514 reorganize language bindings 2010-04-22 11:04:59 +00:00
gsell 2a0211cb19 update ignore prop 2010-04-22 11:01:26 +00:00
gsell aa2c42a56b update ignore prop 2010-04-22 10:59:38 +00:00
gsell e3212420b4 update ignore prop 2010-04-22 10:59:01 +00:00
gsell 96683751bc update ignore prop 2010-04-22 10:58:05 +00:00
gsell 9df74f2f6a update ignore prop 2010-04-22 10:57:27 +00:00
gsell 7164fd6479 added 2010-04-22 10:56:47 +00:00
gsell a13e413fa5 rename Graphs to Examples 2010-04-22 10:55:19 +00:00
gsell b454e1fd93 rename Graphs to Examples 2010-04-22 10:51:51 +00:00
gsell 7062737caf update ignore prop 2010-04-22 10:42:13 +00:00
gsell b754c790a2 update ignore prop 2010-04-22 10:36:23 +00:00
gsell ea79d93e63 update ignore prop 2010-04-22 10:34:30 +00:00
gsell 1607ada0b7 files removed 2010-04-15 16:07:11 +00:00
gsell f027b16757 2010-04-15 16:06:07 +00:00
gsell 2bb4d67749 files added 2010-04-15 16:05:34 +00:00
gsell d2b696959c files removed 2010-04-15 16:05:16 +00:00
gsell 462fb26ba4 2010-04-15 16:00:41 +00:00
gsell 4cb0c1bcfe 2010-01-22 15:00:25 +00:00
gsell e833b1fd16 2009-12-08 00:03:44 +00:00
gsell 6e9cfa47e1 mesh examples added 2009-12-04 16:28:11 +00:00
gsell ce9205c368 tetmesh_write2.c added 2009-11-13 21:52:57 +00:00
gsell 5584086e40 tag test added 2009-11-13 21:51:38 +00:00
gsell 65186f2186 tag implementation, bugfixes ... 2009-11-13 21:50:38 +00:00
gsell 5eb841ecdf tag implementation, bugfixes ... 2009-11-13 21:48:01 +00:00
gsell 57a9c11948 tag implementation, bugfixes ... 2009-11-13 21:46:53 +00:00
gsell 22a1fa33eb tag implementation, bugfixes ... 2009-11-13 21:46:15 +00:00
gsell c4961753a9 Adapted to new API 2009-08-14 13:20:49 +00:00
gsell 75fcb2f68f Adapted to new API 2009-08-14 13:20:16 +00:00
gsell ee0f09de43 Some type cast warning fixed 2009-08-14 13:18:57 +00:00
gsell 9f189e7146 2009-08-14 13:18:04 +00:00
gsell 2ec6aad172 See H5Fed_inquiry.c 2009-08-14 13:15:45 +00:00
gsell 7e39956a36 - Query current level only 
- Documentation updated
 2009-08-14 13:15:08 +00:00
gsell 1665bc9703 H5FedStoreBoundaryfaceGlobalID() removed 2009-08-14 13:13:13 +00:00
gsell 3eac0d6264 see H5Fed_retrieve.c 2009-08-14 13:12:23 +00:00
gsell 3e4028de84 some type cast warning fixed 2009-08-14 13:10:18 +00:00
gsell 0cb95e9683 - Function for traversing elements now returns local ID and local vertex IDs only 
- Function for traversing vertices returns local ID and coordinates only
- Doxygen documentation updated
 2009-08-14 13:08:52 +00:00
gsell 4f78beabde added 2009-08-14 13:04:39 +00:00
gsell 0228c69cfa - refactored variable names local_ prefix removed in some files 
- test existence of vertices while refining via adjecencies
 2009-08-14 13:03:48 +00:00
gsell e047595885 set error handler to abort programm and removed all error checks 2009-07-27 15:17:51 +00:00
gsell 12722cebaf set error handler to abort programm and removed all error checks 2009-07-27 15:17:22 +00:00
gsell 0b9dcea258 set error handler to abort programm and removed all error checks 2009-07-27 15:16:30 +00:00
gsell 05061e09ae fixed empty line follows backslash warning 2009-07-27 15:15:08 +00:00
gsell da80c1736d binary tree replaced with hash-tables and several fixes 2009-07-27 15:12:34 +00:00
gsell 92a24b8890 bugfixes in start traverse functions 2009-07-16 08:42:53 +00:00
gsell 5b45cbce7a bugfixes in pointer calculation 2009-07-16 08:41:44 +00:00
gsell a65496cea3 include for hash search functions added 2009-07-16 08:40:30 +00:00
gsell 92adaf3509 _h5_calloc added 2009-07-16 08:39:35 +00:00
gsell f70dce9acc hash funktions added 2009-07-16 08:38:09 +00:00
gsell a4036b7b5d formating fix 2009-07-16 08:36:49 +00:00
gsell e38e7d1c8e error handler added 2009-07-16 08:35:32 +00:00
gsell d0daec98fa renamed 2009-07-11 08:07:44 +00:00
gsell 38a9e2ee90 renamed 2009-07-11 08:06:50 +00:00
gsell 3978da3963 renamed 2009-07-11 08:05:59 +00:00
gsell f4ea22a702 write TWiki-friendly output 2009-07-11 08:05:24 +00:00
gsell f1239351eb some tests added 2009-07-11 08:03:31 +00:00
gsell 5485eb2661 write TWiki-friendly output 2009-07-11 08:02:27 +00:00
gsell 639d91ee4e renamed 2009-07-03 12:40:38 +00:00
gsell 8f98ff0165 print all up- and downward adjacencies 2009-07-01 19:18:54 +00:00
gsell b6f2894ddb - up- and downward adjacencies implemented 2009-07-01 19:17:38 +00:00
gsell 607894f565 - read everything while opening mesh 
- upward and downward adjacencies added
 2009-07-01 19:16:24 +00:00
gsell 35bbbfb1a9 added 2009-07-01 19:15:14 +00:00
gsell 91b0543866 edge traversing added 2009-06-12 23:56:07 +00:00
gsell b3187bed21 edge traversing added 2009-06-12 23:55:29 +00:00
gsell 584ff25f33 some API function has been renamed 2009-06-11 23:14:27 +00:00
gsell 17556cbfab added 2009-06-11 23:12:24 +00:00
gsell eccbfc5a42 added 2009-06-11 23:11:06 +00:00
gsell 255da882f7 bugfixes, implementation of adjacency functions 2009-06-11 23:10:11 +00:00
gsell 5bd0617f59 bugfixes, implementation of adjacency functions 2009-06-11 23:09:47 +00:00
gsell 48618f0028 removed 2009-06-08 22:54:25 +00:00
gsell bf9dbef0c9 adapted to changed API 2009-05-14 16:41:29 +00:00
gsell 6f8757a27d bugfixes 2009-05-14 16:40:16 +00:00
gsell 6b5d9181e4 adaptions to element structurs: insteed of storeing the refinement level we save the global id of the first child 2009-05-14 16:39:17 +00:00
gsell e40565f8f0 macros to (dis-)assemble edge and triangle ids added 2009-05-14 16:35:04 +00:00
gsell 12a7988abc use macro to extract element id 2009-05-14 16:33:46 +00:00
gsell 8442f85127 same basic functionality added 2009-05-14 16:28:53 +00:00
gsell e0221ae1b7 member "global_child_eid" added to hdf5 datatype 2009-05-14 16:27:43 +00:00
gsell 9012551834 bugfixes in traversing refined elements 2009-05-14 16:26:06 +00:00
gsell 526e4cfc10 bugfixes, use macro to extract element id from triangle/edge id 2009-05-14 16:24:41 +00:00
gsell bf851824a2 bugfixes in refinement 2009-05-14 16:22:56 +00:00
gsell 6a60e90a43 bugfix in H5FedRefineElem() 2009-05-14 16:20:25 +00:00
gsell 8c22590be2 API changes 2009-04-16 15:24:29 +00:00
gsell e206c259a5 API changes 2009-04-16 15:23:57 +00:00
gsell 533f2d083b added 2009-04-16 15:22:50 +00:00
gsell 90b075b911 2009-04-16 15:22:00 +00:00
gsell 035ef4655c added 2009-04-16 15:21:31 +00:00
gsell 6623cc38ad 2009-04-16 15:20:53 +00:00
gsell 6231364157 API adaptions 2009-03-26 16:34:50 +00:00
gsell 0d7a0c737e API adaptions 2009-03-26 16:34:25 +00:00
gsell 09923dba23 - Bugfixes 
- API adaptions
 2009-03-26 14:24:12 +00:00
gsell b831965df9 - bugfixes 
- API adaptions
 2009-03-26 14:23:33 +00:00
gsell b3e7f433ee Added 2009-03-26 14:22:39 +00:00
gsell 25de55c54b Removed 2009-03-26 14:22:00 +00:00
gsell 6a0e624969 Added 2009-03-26 14:20:54 +00:00
gsell 6401b94f60 Adapted to new API 2009-03-26 14:18:59 +00:00
gsell a82888c2e8 configure.ac: 
- split var for test target TTARGET into TPTARGET, TBTARGET, ...
 2009-03-13 15:29:03 +00:00
gsell f405045b13 - adapted to new API 2009-03-13 15:26:04 +00:00
gsell 8921386b9b - adapted to new API 2009-03-13 15:25:27 +00:00
gsell b1b9c2190d - adapt to new API 2009-03-13 15:24:50 +00:00
gsell dc631ce508 - changes for revised API 
- bugfixes
- ...
 2009-03-13 15:23:52 +00:00
gsell 2006e4d5ff - start implementing wrappers for HDF5 calls 
- bugfixes
- ...
 2009-03-13 15:22:50 +00:00
gsell 199a9a56c2 added 2009-01-30 15:07:01 +00:00
gsell c1cec7234b 2009-01-30 15:06:15 +00:00
gsell 4fe83456f6 - do not run doxygen as default target. 2009-01-30 15:05:16 +00:00
gsell 3d0f8bab99 - moved intro from C-source to H5.dox 
- add some new input-files to Doxydoc
 2009-01-30 15:03:27 +00:00
gsell d8eb90d620 - merge changes from 1.4 branch 2009-01-30 15:00:06 +00:00
gsell 253708eab7 - several API changes 
- refactoring
- ... and more
 2009-01-30 14:57:13 +00:00
gsell caeefd811d - several API changes 
- refactoring
- ... and more
 2009-01-30 14:56:01 +00:00
gsell 35280e88e0 added 2008-10-01 15:46:06 +00:00
gsell 14ef15cf83 refactoring 2008-10-01 15:43:55 +00:00
gsell 828388c065 2008-09-25 15:52:26 +00:00
gsell c263b1557b added 2008-09-25 15:51:32 +00:00
gsell 2680653214 2008-09-25 15:50:49 +00:00
gsell b22f280da0 2008-09-25 15:50:18 +00:00
gsell a1d62018ff 2008-09-25 15:49:08 +00:00
gsell cd7ffd24e4 added 2008-09-25 15:47:55 +00:00
gsell b737d2cb14 refactoring 2008-09-25 15:47:26 +00:00
gsell ae72438ae3 added 2008-09-25 15:46:39 +00:00
gsell 07e57ff23a refactoring 2008-09-25 15:43:24 +00:00
gsell 7959742667 renamed 2008-08-27 13:56:59 +00:00
gsell de5f7c29d6 h5_core/h5_general.c 
- use function to get debug level
- use of H5_ERR_INIT insteed H5PART_ERR_INIT
- function to get/set error number
 2008-08-27 13:56:41 +00:00
gsell 0011e28251 directory h5 renamed to h5_core 2008-08-27 10:06:46 +00:00
gsell f09c47a6b2 include of H5Fed_boundaries added 2008-08-27 10:04:33 +00:00
gsell c5eb850b01 new source files H5Fed_boundaries.[ch] added 2008-08-27 10:03:33 +00:00
gsell 7465764861 declaration of function H5FedMapTriangle2GlobalID() added 2008-08-27 10:02:36 +00:00
gsell 58549852a6 files renamed: h5 prefix added 2008-08-27 09:59:36 +00:00
gsell 5b381c8def added 2008-08-27 09:56:14 +00:00
gsell 3f9da8b2bd Mappings of vertices and triangles 2008-08-27 09:54:24 +00:00
gsell 16a6792af4 file renamed 2008-08-27 09:28:55 +00:00
gsell 1a2ee0adf6 definition of H5_TET_MASK fixed 2008-08-27 09:28:07 +00:00
gsell bceb2c6b35 test map_triangle2globalid added 2008-08-20 15:08:33 +00:00
gsell 90e53a6e52 use of obsolete macro fixed 2008-08-20 15:07:45 +00:00
gsell 66f0bf6e4e use of obsolete macro fixed 2008-08-20 15:07:28 +00:00
gsell 657aee3049 autotools generated file removed 2008-08-20 14:46:44 +00:00
gsell ba01c980ac added 2008-08-20 14:37:57 +00:00
gsell 6def843cc3 renamed 2008-08-20 14:37:30 +00:00
gsell c98053870f some tests renamed and more added 2008-08-20 14:36:46 +00:00
gsell 774d60f9bb added 2008-08-20 14:35:56 +00:00
gsell 0f34916a56 mapping of tets and triangles to global and local id added 2008-08-20 14:30:57 +00:00
gsell 4f37dbe55a added 2008-08-20 14:30:31 +00:00
gsell a390b30fcb mapping of tets and triangles to global and local id added 2008-08-20 14:29:26 +00:00
Benedikt Oswald fb891c3e80 Corrected wrong directory names in automake files. 2008-08-06 09:09:51 +00:00
gsell 8175442f6b C files renamed 2008-07-30 08:26:52 +00:00
gsell 54546b8e84 h5b renamed to H5Block 2008-07-30 08:20:40 +00:00
gsell 7400597342 h5u renamed to H5Part 2008-07-30 08:20:14 +00:00
gsell a2a36999c9 h5t renamed to H5Fed 2008-07-30 08:19:23 +00:00
gsell 9681dbf3b1 mappings and bookkeeping functions we need for boundary triangles 2008-07-17 14:01:20 +00:00
gsell 5f79e622fc triangle tests added 2008-07-02 14:27:35 +00:00
gsell bd01dcc24b refactoring 2008-07-02 14:26:24 +00:00
gsell 309cf36f38 refactoring 2008-07-02 14:25:50 +00:00
gsell 1b9fb3302d added 2008-07-02 14:24:38 +00:00
gsell f6d203f6a7 added 2008-07-02 14:23:30 +00:00
gsell 55b5b5e7cc added 2008-07-02 14:22:51 +00:00
gsell 1790c475da refactoring and triangle meshes 2008-07-02 14:21:21 +00:00
gsell 5729fa420f can be recreated by autogen.sh 2008-06-19 15:37:24 +00:00
gsell 83012629ac refactoring 2008-06-19 15:34:06 +00:00
gsell 2457075f32 refactoring 2008-06-19 15:34:00 +00:00
gsell ad4ab87b6e refactoring 2008-06-19 15:33:47 +00:00
gsell 0e4151ae1f refactoring 2008-06-19 15:33:02 +00:00
gsell b55e29398f refactoring 2008-06-19 15:32:43 +00:00
gsell 0547eb1817 refactoring 2008-06-19 15:28:44 +00:00
gsell d0f262e755 refactoring 2008-06-19 15:16:48 +00:00
gsell 7829615f32 refactoring 2008-06-19 15:15:58 +00:00
gsell 11b105bc82 refactoring 2008-06-19 15:13:34 +00:00
gsell b51290f270 refactoring 2008-06-19 15:12:02 +00:00
gsell d828fb0364 refactoring 2008-06-19 15:11:23 +00:00
gsell 3efd4d64a5 refactoring 2008-06-19 15:10:43 +00:00
gsell 1d1dfdb883 refactoring 2008-06-19 15:10:29 +00:00
gsell 44d30257a4 refactoring 2008-06-19 15:10:21 +00:00
gsell e21d2af4ec refactoring 2008-06-19 15:10:15 +00:00
gsell d407f58b7c refactoring 2008-06-19 15:10:08 +00:00
gsell a768784821 refactoring 2008-06-19 15:09:00 +00:00
gsell 2e0dde14c4 refactoring 2008-06-19 15:08:10 +00:00
gsell 6781800ede refactoring 2008-06-19 15:06:16 +00:00
gsell d19eb1469e refactoring 2008-06-19 15:06:10 +00:00
gsell 13fee62afd refactoring 2008-06-19 15:06:05 +00:00
gsell b0bad95604 refactoring 2008-06-19 15:05:48 +00:00
gsell 275d279f8d refactoring 2008-06-19 15:05:43 +00:00
gsell d00ea580cd refactoring 2008-06-19 15:04:36 +00:00
gsell 4072560858 refactoring 2008-06-19 15:04:28 +00:00
gsell dddb0f8c2b refactoring 2008-06-19 15:04:07 +00:00
gsell f671df975d refactoring 2008-06-19 15:03:44 +00:00
gsell caeac4ef8b refactoring 2008-06-19 15:03:15 +00:00
gsell d06bef0854 refactoring 2008-06-19 15:03:01 +00:00
gsell 12ae632ac4 added 2008-06-05 12:48:52 +00:00
gsell fd43fea24e removed 2008-06-05 12:45:24 +00:00
gsell 0f271a745f added 2008-03-19 11:36:30 +00:00
gsell 4d4b21aac3 read_vertices() 
read_tets()
	- leave loop as soon as we have read the expected number of objects
 2008-02-22 14:39:33 +00:00
gsell 136b1df93e several funcion renamed and param types changed, read logs for include 
files for more details
 2008-02-22 14:23:19 +00:00
gsell 702a2b0398 _read_data() 
- step id from error handling removed
 2008-02-22 14:13:13 +00:00
gsell 68529915b3 H5FedGetNumMeshes() 
H5FedOpenMesh()
H5FedGetNumLevels()
H5FedSetLevel()
	- added
H5FedGetVertex()
H5FedGetTetrahedron()
	- param type changed
 2008-02-22 13:56:49 +00:00
gsell 5d5e49cd83 _h5t_init_fdata() 
* init t->num_meshes;
 2008-02-22 13:53:13 +00:00
gsell d52258a68a H5U_read_elems() 
- #ifdef INDEPENDENT_IO removed, pass xfer_prop in both cases
 2008-02-22 13:51:37 +00:00
gsell 33e37380d2 H5t_open_mesh() 
- renamed, was H5t_set_mesh
	- parm id isn't const any more
H5t_open_level()
	- renamed, was H5t_set_level
H5t_get_vertex()
	- parm P type changed
H5t_get_tet
	- parm vertex_ids type changed
 2008-02-22 13:49:03 +00:00
gsell 8cee40b22a reading of vertices and tets added 2008-02-22 13:45:25 +00:00
gsell 88ec6fd6d0 H5_ERR_INTERNAL 
- added
struct h5t_fdata
       - last_retrieved_vertex_id and last_retrieved_tet_id added
 2008-02-22 13:44:02 +00:00
gsell 17b5cf1a47 HANDLE_H5_INTERNAL_ERR 
- added
HANDLE_H5D_READ_ERR
	- do not print step id any more
 2008-02-22 13:42:34 +00:00
gsell f50381096a rules to compile read_tet added 2008-02-22 13:39:42 +00:00
gsell d7230920ed added 2008-02-22 13:38:54 +00:00
gsell 3b1b2075a5 struct vertex 
* global_id added
add_level()
	* use global vertex id defined in struct
main()
	* add error handling after calls to add_level)
 2008-02-22 13:38:28 +00:00
Benedikt Oswald 37a9b877aa Added include files. 2008-02-20 14:19:29 +00:00
gsell 6888d0cd6f - empty line removed 2008-02-20 14:07:58 +00:00
gsell 446e5dfcd8 H5t_store_tet() 
- some debug output added
 2008-02-20 14:07:18 +00:00
gsell 77ca64df60 H5t_get_num_meshes() 
H5t_get_num_meshes()
H5t_get_num_levels()
H5t_set_level()
	- added
H5t_store_tet()
	- output of error messages added
 2008-02-20 14:04:59 +00:00
gsell 6684a3cdfc - declaration of new functions added 2008-02-20 13:48:55 +00:00
gsell 5426e8267e HANDLE_H5_UNDEF_MESH_ERR 
HANDLE_H5_UNDEF_LEVEL_ERR
HANDLE_H5_OVERFLOW_ERR
HANDLE_H5_PARENT_ID_ERR
HANDLE_H5_OUT_OF_RANGE_ERR
	- macros added
 2008-02-20 13:48:13 +00:00
gsell c6dc048f25 H5FedGetNumLevels() 
- moved to H5Fed_storeretrieve.c
 2008-02-20 13:46:16 +00:00
gsell 9eb059e1ec struct h5t_fdata 
- num_meshes added
 2008-02-20 13:42:41 +00:00
gsell 8df79f3ee4 H5FedGetNumLevels() 
H5FedSetLevel()
H5FedGetNumMeshes()
H5FedSetMesh()	
	- added
 2008-02-20 13:41:12 +00:00
gsell 64b9441aed H5FedGetNumVertices() 
- call H5t_get_num_vertices()
H5FedGetVertex()
- call H5t_get_vertex()
H5FedGetNumTetrahedras()
- call H5t_get_num_tets()
H5FedGetTetrahedra()
- call H5t_get_tet()
 2008-02-20 10:32:23 +00:00
gsell 11921ff04c - declaration of new functions added 2008-02-20 10:25:54 +00:00
gsell a83d527326 _write_data() 
* write of dataset H5T_TETMESH_NUM_ELEMS_ON_LEVEL_DSNAME added
H5_add_level()
H5_store_tet()
	* handling of num_tets_on_level added
_read_vertices()
H5t_get_num_vertices()
H5t_get_vertex_ids()
H5t_get_vertex()
H5t_get_num_tets()
H5t_get_tet()
	* added
 2008-02-20 10:24:48 +00:00
gsell 3c69548d96 - macro H5T_TETMESH_NUM_ELEMS_ON_LEVEL_DSNAME added 2008-02-20 10:18:18 +00:00
gsell e1055a5241 - num_tets_on_level added to struct h5t_fdata 2008-02-20 10:17:11 +00:00
gsell 449e7b9465 trunk/src/H5Block.c 
trunk/src/H5Fed.c
trunk/src/H5Fed_storeretrieve.c
- include <stdarg.h> added
 2008-02-18 14:40:12 +00:00
gsell bac53ee2d2 test/h5t/Makefile.am 
test/h5u/Makefile.am
test/h5b/H5BlockTestAttributes.c
test/h5b/Makefile.am
src/H5Part.c
src/H5Block.c
src/H5Part.h
src/Makefile.am
src/h5/errorhandling.c
src/h5/h5_types.h
src/h5/attribs.c
src/h5/t_readwrite.c
src/h5/u_readwrite.c
src/h5/t_openclose.c
src/h5/h5_private.h
src/h5/readwrite.c
src/h5/openclose.c
src/h5/Makefile.am
- changes due to removed H5PartTypes.h, H5BlockTyes.h and H5PartPrivate.h
 2008-02-18 14:33:30 +00:00
gsell a805b54aac removed 2008-02-18 14:03:25 +00:00
gsell 91100da0d7 removed 2008-02-18 14:01:16 +00:00
gsell d658271487 removed 2008-02-18 14:00:16 +00:00
gsell 056ad4e54f added 2008-02-18 13:55:48 +00:00
gsell 1be1123b9a - typo in value of include_HEADERS fixed 2008-02-18 13:54:51 +00:00
gsell 1cec74a0b4 _h5b_open_file() 
- we cannot call H5_check_filehandle() here
H5_open_file()
- Output of info-message changed
 2008-02-18 13:52:38 +00:00
gsell 1597d075fd H5_write_data() 
- output info-message with group and dataset name we are writing to
 2008-02-18 13:45:59 +00:00
gsell 361bdbedc6 - calls of HANDLE_H5S_CREATE_SIMPLE_ERR() adapted to new definition 2008-02-18 13:43:52 +00:00
gsell 96f5a0ec45 - error handling added 2008-02-18 13:42:17 +00:00
gsell 2ab830d4f1 - error handling added 
- output of informational messages
 2008-02-18 13:41:41 +00:00
gsell 08424772cf - HANDLE_H5S_CREATE_SIMPLE_ERR() output rank now 2008-02-18 13:40:23 +00:00
gsell 551113e4a8 - H5_get_objname() added 
- some log-macros added
 2008-02-18 13:36:16 +00:00
gsell 08cb0e3e55 H5_get_objname() 
- added
 2008-02-18 13:35:16 +00:00
gsell 7651bbf900 - SET_FNAME() added to all functions 2008-02-18 13:34:26 +00:00
gsell e3f0a69e9d - reduce verbosity level to 4 2008-02-18 13:32:05 +00:00
gsell ee593dd338 src/H5Fed.c 
- includes fixed
 2008-02-14 15:43:10 +00:00
gsell 1c7df2a598 H5Part.c 
H5Block.c
h5/u_readwrite.c
h5/attribs.c
h5/t_openclose.c
h5/readwrite.c
h5/openclose.c
- includes fixed
 2008-02-14 15:41:50 +00:00
gsell bd3b9fa4f6 src/h5/t_readwrite.h 
- declaration of new functions added
 2008-02-14 15:38:56 +00:00
gsell 693c9ff72b src/h5/h5_private.h 
- include of "errorhandling_private.h" added
- macros "CHECK_FILEHANDLE", "CHECK_WRITABLE_MODE", "CHECK_READONLY_MODE" and
   "CHECK_TIMEGROUP" added
 2008-02-14 15:37:42 +00:00
gsell 99274bbec9 src/h5/t_readwrite.c 
- includes fixed
- H5t_add_level()
  H5t_add_num_vertices()
  H5t_store_vertex()
  H5t_add_num_tets()
  H5t_store_tet()
  * added
 2008-02-14 15:35:17 +00:00
gsell f163070d47 src/h5/h5_types.h 
- macro H5_ERR_NOT_IMPLEMENTED added
 2008-02-14 15:32:59 +00:00
gsell 9c48120cd9 src/h5/errorhandling.h 
- maro "H5_warn" added
- declaration of "H5_set_funcname()" fixed
 2008-02-14 15:31:53 +00:00
gsell bf9993808a src/h5/errorhandling.c 
- includes fixed
- use "h5" types insteed of obsolete "h5part" types
- H5_set_funcname()
  * fix definition of parameter "fname"
  * fix cast in assignment to "__funcname"
 2008-02-14 15:30:11 +00:00
gsell 8c35cd1bdf src/Makefile.am 
- "H5PartErrors.h" and "H5BlockErrors.h" removed from "include_HEADERS"
 2008-02-14 15:26:29 +00:00
gsell 13c206ef1a src/H5Fed_storeretrieve.c 
- include files fixed
- SET_FNAME(__func__) added to all (?) functions
- move real implementation to "h5/t_readwrite.c"
 2008-02-14 15:24:44 +00:00
gsell 4ad70757eb removed 2008-02-14 14:57:27 +00:00
gsell 35888e637f src/H5PartErrors.h 
- removed, content moved to "h5/errorhandling_private.h"
 2008-02-14 13:44:58 +00:00
gsell 4be57b410a src/H5BlockErrors.h 
- removed, content added to "h5/errorhandling_private.h"
 2008-02-14 13:41:23 +00:00
gsell 7deb9dff22 src/h5/h5.h 
- renamed, was "_h5.h"
 2008-02-14 13:22:14 +00:00
gsell a972f67eba src/h5/_h5.h 
- renamed, was "H5.h"
 2008-02-14 13:21:36 +00:00
gsell 4f28118033 src/h5/H5.h 
- include of "h5_private.h" removed
 2008-02-14 13:20:31 +00:00
gsell 091e228da1 Makefile.am 
src/Makefile.am
- clean/distclean errors fixed
 2008-02-14 09:15:08 +00:00
gsell 78c4e01ee1 removed 2008-02-14 09:13:12 +00:00
gsell 7de54ba17e src/H5Fed.c 
- includes fixed
 2008-02-13 16:11:35 +00:00
gsell a26d761d20 src/H5Fed_storeretrieve.c 
- includes fixed
 2008-02-13 16:11:05 +00:00
gsell 0561fc835e test/h5u/H5PartTest.cc 
- format type error fixed
 2008-02-13 16:09:48 +00:00
gsell ece99021bd configure.ac 
- adaptions to new hierarchy in test dir
 2008-02-13 15:42:05 +00:00
gsell 48c68c5fa7 src/H5Fed.h 
- several API changes
 2008-02-13 15:40:29 +00:00
gsell 8a39409161 src/H5PartErrors.h 
- output of step id removed
 2008-02-13 15:38:49 +00:00
gsell b7cd8ff3b6 removed 2008-02-13 15:36:57 +00:00
gsell bde413ad6c removed 2008-02-13 15:35:47 +00:00
gsell 87a40d2a73 added 2008-02-13 15:34:53 +00:00
gsell baf9487e12 removed 2008-02-13 15:33:44 +00:00
gsell b421bd27dc src/h5/H5.h 
- include of "t_openclose.h" added
 2008-02-13 15:32:07 +00:00
gsell a79bfceef8 added 2008-02-13 15:29:29 +00:00
gsell 5f40ae0ba6 src/h5/readwrite.c 
- error handling of dataset write errors: output of step-id removed
 2008-02-13 15:24:56 +00:00
gsell 29f928c69a src/h5/openclose.h 
- several declarations added
 2008-02-13 15:22:56 +00:00
gsell d42a441130 src/h5/h5_types.h 
src/h5/t_readwrite.c
src/h5/t_openclose.c
- mesh write functions implemented
 2008-02-13 15:21:51 +00:00
gsell 926723962a src/h5/openclose.c 
- minor fixes
 2008-02-13 15:18:56 +00:00
gsell 0222405291 removed 2008-02-13 15:16:47 +00:00
gsell bc10ebd64e tests moved to subdirectories 2008-02-13 15:15:11 +00:00
gsell b1f4233cb7 added 2008-02-13 15:09:50 +00:00
gsell 7cc4d11c37 added 2008-02-13 15:09:44 +00:00
gsell 69b9b6bb4b added 2008-02-13 15:09:35 +00:00
gsell 1da909b862 added 2008-02-13 15:09:26 +00:00
gsell 39be999eb6 added 2008-02-13 15:09:13 +00:00
gsell 4541d58a9c added 2008-02-13 15:09:05 +00:00
gsell b6f16a7648 added 2008-02-13 15:08:57 +00:00
gsell 25ca447c5a added 2008-02-13 15:08:36 +00:00
gsell aef14e1392 test/h5u/H5test.cc 
test/h5u/H5testF.f
test/h5u/H5PartTest.cc
test/h5u/H5ParallelTest.cc
test/h5b/H5BlockParTestScalarField.pbs
- moved
 2008-02-06 11:08:52 +00:00
gsell 1c0148668f test/h5b/H5BlockTestAttributes.c 
test/h5b/H5BlockTestAttributesF.f90
test/h5b/H5BlockParTestScalarField.c
test/h5b/H5BlockParTestScalarFieldF.f90
test/h5b/H5BlockDissolveGhosts.c
- moved
 2008-02-06 11:06:17 +00:00
gsell e7288533d6 test/h5u/Bench.c 
- moved
 2008-02-06 11:03:03 +00:00
gsell 447d800a1c added 2008-02-06 10:59:51 +00:00
gsell ca8decaf45 est/H5BlockTestAttributes.c 
- adaption to renamed elements in struct h5_file
src/H5PartErrors.h
src/H5BlockTypes.h
src/H5Part.h
src/H5Block.c
- refactoring
src/H5Fed.h
src/H5Fed_statistics.c
src/Makefile.am
src/H5BlockErrors.h
src/h5/h5_types.h
src/h5/attribs.c
src/h5/t_readwrite.c
src/h5/u_readwrite.c
src/h5/t_openclose.c
src/h5/H5.h
src/h5/readwrite.c
src/h5/openclose.c
src/h5/openclose.h
src/H5Fed.c
- H5Fed write vertices and tets
 2008-01-25 19:30:41 +00:00
gsell e581c105d6 src/H5PartErrors.h 
* adaptions to renamed members in "struct h5_file"
 2008-01-20 11:11:08 +00:00
gsell fe82dbc905 src/H5Fed.c 
* coding
 2008-01-20 11:09:20 +00:00
gsell 1dc9bd1a4b src/H5Parth 
* new macros for file access modes
 2008-01-20 11:07:55 +00:00
gsell f1400efd79 src/H5Fed_store.c 
* rudimental write functions for vertices and tets added
 2008-01-20 11:05:27 +00:00
gsell ec530077a8 src/H5Part.c 
* adaptions to renamed member in "struct h5_file"
 2008-01-20 11:01:58 +00:00
gsell 3ad5991be5 src/h5/Makefile.am 
* some C files added to library source
 2008-01-20 11:00:27 +00:00
gsell 1caf5a3a04 src/h5/t_openclose.c 
src/h5/t_readwrite.c
* added
 2008-01-20 10:58:56 +00:00
gsell ee30cb6123 src/h5/openclose.c 
* adaption to renamed members in "struct h5_file"
* several changes and additions for H5Fed
 2008-01-20 10:57:19 +00:00
gsell 720674a15f src/h5/readwrite.c 
* adaptions to renamed members in "struct h5_file"
* several changes/additions for H5Fed
 2008-01-20 10:55:19 +00:00
gsell 89b62f0306 src/h5/u_readwrite.c 
* adaption to renamed members in "struct h5_file"
 2008-01-20 10:53:59 +00:00
gsell 53d6c0cf0a src/h5/h5_types.h 
* several members in "struct h5_file" renamed
* structures for H5Fed added
 2008-01-20 10:52:34 +00:00
gsell efa9c1cd84 src/H5Block.c 
* adaption to renamed members in "struct h5_file"
 2008-01-20 10:49:28 +00:00
gsell 6df181d0c7 src/H5BlockTypes.h 
* struct h5b_fdata
  - "timestep" renamed to "step_idx"
 2008-01-20 10:45:35 +00:00
gsell 9940630e2c src/H5Fed.h 
- API changes
 2008-01-20 10:42:51 +00:00
adelmann 08d7c7fddd Full blown autogen, configure bla etc. 2008-01-08 21:37:28 +00:00
adelmann 3d2b121cf2 clean up before commit configure like H5PartMerge 2008-01-08 20:18:50 +00:00
adelmann 16615a96ba Initial commit of Christof's H5PartMerge 2008-01-05 13:52:05 +00:00
gsell c356139f6b src/h5/h5_types.h 
- definition of h5_file added
 2007-12-21 19:08:18 +00:00
gsell e46df85671 src/H5PartTypes.h 
- definition of h5_file moved to h5/h5_types.h
 2007-12-21 19:07:25 +00:00
gsell e4ed2a1ae6 src/H5Fed_adjacency.c 
src/H5Fed_dof.c
src/H5Fed_retrieve.c
src/H5Fed_statistics.c
src/H5Fed_store.c
src/H5Fed.c
	- added
 2007-12-21 19:06:25 +00:00
gsell b27695d751 src/Makefile.am 
- H5Fed files added
 2007-12-21 19:03:14 +00:00
gsell 35c5969094 src/H5Fed.h 
- some fixes (typo's  etc)
	- Doxygen doc moved to .c files
 2007-12-21 19:02:21 +00:00
gsell c1ddd1e8fc src/H5Fed.c 
- added
 2007-12-21 16:16:10 +00:00
gsell 452b1fd471 src/h5/h5_types.h 
- added
 2007-12-21 16:15:05 +00:00
gsell f7b2471701 src/H5Fed.h 
src/H5BlockTypes.h
src/H5Part.c
src/H5PartPrivate.h
src/H5Block.c
src/H5Part.h
src/h5/u_readwrite.h
src/h5/H5.h
src/h5/readwrite.c
src/h5/openclose.c
src/h5/attribs.c
src/h5/u_readwrite.c
src/h5/readwrite.h
src/h5/openclose.h
src/h5/attribs.h
src/bindings/Fortran/H5PartF.c
src/bindings/Fortran/H5BlockF.c
src/H5Block.h
src/H5PartTypes.h
	- refactoring
	  * struct H5PartFile -> struct h5_file
	  * struct H5BlockStruct -> struct h5b_fdata
 2007-12-21 16:14:08 +00:00
gsell b5b66ebed1 src/bindings/C++/Makefile.am 
- CFLAGS/Include definitions revised
 2007-12-21 16:06:41 +00:00
Benedikt Oswald 4009cb3f15 Added first write routines to C++ API of H5FED. 2007-12-19 08:59:45 +00:00
Benedikt Oswald 16a481c4fa Added first write routines to C++ API of H5FED. 2007-12-19 08:55:51 +00:00
Benedikt Oswald 3a350f975d Corrected C++ part. 2007-12-19 08:32:06 +00:00
gsell 1dd6e487be src/bindings/C++/Makefile.am 
- definition of OBJEXT added
 2007-12-17 23:18:35 +00:00
gsell 0858cca67d src/bindings/C++/Makefile.am 
- rules added to build libH5XX.a
 2007-12-17 23:16:26 +00:00
gsell 65c8f7de29 src/h5/Makefile.am 
- minor change (some blank lines removed)
 2007-12-17 23:15:14 +00:00
gsell cddb48ff47 src/Makefile.am 
- minor change (blank line added somewhere)
 2007-12-17 23:14:10 +00:00
gsell 607a398f87 configure.ac 
- code to build C++ interface added
 2007-12-17 16:37:42 +00:00
gsell fc87576807 added 2007-12-17 16:36:11 +00:00
gsell 4a6c4817ce src/Makefile.am 
- rule to build "libpH5Part.a" removed
 2007-12-17 16:35:24 +00:00
gsell 3c22a8c653 configure.ac 
- option "--with-hdf5" prefered over env.variable
	- "TOOLS_H5PART_LIB" set to "-lH5Part" in serial *and* parallel mode
 2007-12-17 14:58:59 +00:00
gsell c4c9eca143 src/h5/u_readwrite.c 
- forgot to rename "H5Part_print_debug()" to "H5_print_debug()" in some lines.
 2007-12-17 14:55:36 +00:00
gsell e919f34618 test/Makefile.am 
- "-lH5Part" and "-lpH5Part" removed from build rules
 2007-12-17 14:54:15 +00:00
Benedikt Oswald bfcacfddc8 Definition of H5Fed C++ interface, class definition and implementation, first material. 2007-12-17 12:41:37 +00:00
gsell 5e0c8a67cd src/h5/openclose.c 
- _init_block()
	  fixed: check of file handle with non-existing function
 2007-12-17 12:36:48 +00:00
gsell 69367a7713 src/h5/errorhandling.c 
- "_err_handler" initialized with non-existing function
 2007-12-17 12:35:13 +00:00
gsell 89bdeb1459 src/H5Block.c 
- H5BlockGetFieldInfo()
	  * call of non-existing function "_H5Part_get_object_name()" new name of this function
	    is "H5_get_object_name()".
 2007-12-17 12:33:16 +00:00
gsell 4e7f8be568 configure.ac 
- some "echo" calls replaced with AC_MSG_... calls
 2007-12-17 12:28:35 +00:00
Benedikt Oswald 317d1b6d9f Definition of H5Fed C++ interface, class definition and implementation, first material. 2007-12-17 11:11:00 +00:00
Benedikt Oswald 0235b61dc9 Definition of H5Fed C++ interface, class definition and implementation, first material. 2007-12-17 10:45:50 +00:00
Benedikt Oswald dfebe64c73 Definition of H5Fed C++ interface, class definition and implementation, first material. 2007-12-17 10:45:21 +00:00
gsell 921469eba8 src/H5Fed.h 
- new type 'h5_id_t' for object id's
	- new type 'h5_size_t' for size of objects
	- parameter 'parent_id' added to Get/Store functions
	- various other changes
 2007-12-16 23:56:00 +00:00
gsell 379de5735f added 2007-12-16 21:45:43 +00:00
gsell e474e78160 C API declaration for H5Fed 2007-12-10 14:28:12 +00:00
adelmann 7b43df2f79 add ierr to MPI_Finalize 2007-11-26 19:45:55 +00:00
gsell d9239fdd88 src/h5/errorhandling.c 
src/h5/u_readwrite.h
src/h5/H5.h
src/h5/errorhandling.h
src/h5/readwrite.c
src/h5/openclose.c
src/h5/attribs.c
src/h5/Makefile.am
src/h5/u_readwrite.c
src/h5/readwrite.h
src/h5/openclose.h
src/h5/attribs.h
	* added
 2007-11-22 11:08:23 +00:00
gsell 69600afb50 * Fortran bindings moved to src/bindings/Fortran 2007-11-22 11:05:10 +00:00
gsell 75de0e2754 src/bindings/Fortran 
* dirs added
	* Fortran bindings moved to bindings/Fortran
 2007-11-22 11:02:52 +00:00
gsell 535d18389c src/h5 
* added
 2007-11-22 11:01:48 +00:00
gsell 082724e233 src/H5PartTypes.h 
* entry to keep the ID of the root group added to struct H5PartFile
	* name of current step/index added to struct H5PartFile
 2007-11-22 10:52:34 +00:00
gsell b9e9b910f1 src/H5BlockErrors.h 
* function to get nam of currengt function has been renamed to H5_get_funcname()
 2007-11-22 10:48:06 +00:00
gsell 4ce50652bc src/Makefile.am 
* Fortran bindings have been moved to another directory
 2007-11-22 10:46:20 +00:00
gsell b2e2cf3b95 src/H5Block.c 
* use of H5 kernel functions
	* INIT(f) removed, Block stuff will now be initialized during file opening.
 2007-11-22 10:44:49 +00:00
gsell 698135bb91 src/H5PartErrors.h 
* _H5Part_get_funcname() has been renamed to H5_get_funcname()
 2007-11-22 10:42:19 +00:00
gsell 9a8a7a7fe9 src/H5PartPrivate.h 
* declarations moved to corresponding files in libH5
 2007-11-22 10:39:18 +00:00
gsell b4414ea058 src/H5Part.c 
* mostly everything moved to libH5.
 2007-11-22 10:36:20 +00:00
gsell 8abb105f2f configure.ac 
* set version number in AC_INIT to 1.5.0
        * set AC_PREREQ to 2.59
        * --with-hdf5path renamed to --with-hdf5
        * we don't distinguish serial and paralell version in the library name any more
	* src/h5/Makefile added to AC_CONFIG_FILES
 2007-11-22 10:34:26 +00:00
gsell 52fa2ad3ee Makefile.am 
o src/h5 added to subdirs
 2007-11-22 10:21:52 +00:00
gsell b9d3f8d2bd test/Makeffile.am 
o libH5 added to H5LIB
 2007-11-22 10:20:50 +00:00
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src/h5core/h5b_errorhandling_private.h -text
src/h5core/h5b_model.c -text
src/h5core/h5b_model_private.h -text
src/h5core/h5b_readwrite.c -text
src/h5core/h5b_types_private.h -text
src/h5core/h5t_access_private.h -text
src/h5core/h5t_access_tetm.c -text
src/h5core/h5t_access_trim.c -text
src/h5core/h5t_adjacencies.c -text
src/h5core/h5t_adjacencies_private.h -text
src/h5core/h5t_adjacencies_tetm.c -text
src/h5core/h5t_adjacencies_trim.c -text
src/h5core/h5t_core_private.h -text
src/h5core/h5t_errorhandling_private.h -text
src/h5core/h5t_hsearch.c -text
src/h5core/h5t_hsearch_private.h -text
src/h5core/h5t_inquiry.c -text
src/h5core/h5t_map.c -text
src/h5core/h5t_map_private.h -text
src/h5core/h5t_model.c -text
src/h5core/h5t_model_private.h -text
src/h5core/h5t_model_tetm.c -text
src/h5core/h5t_model_trim.c -text
src/h5core/h5t_readwrite.c -text
src/h5core/h5t_readwrite_private.h -text
src/h5core/h5t_readwrite_tetm.c -text
src/h5core/h5t_readwrite_trim.c -text
src/h5core/h5t_ref_elements.c -text
src/h5core/h5t_ref_elements_private.h -text
src/h5core/h5t_retrieve.c -text
src/h5core/h5t_retrieve_private.h -text
src/h5core/h5t_retrieve_tetm.c -text
src/h5core/h5t_retrieve_trim.c -text
src/h5core/h5t_store.c -text
src/h5core/h5t_store_private.h -text
src/h5core/h5t_store_tetm.c -text
src/h5core/h5t_store_trim.c -text
src/h5core/h5t_store_trim_private.h -text
src/h5core/h5t_tags.c -text
src/h5core/h5t_tags_private.h -text
src/h5core/h5t_types_private.h -text
src/h5core/h5u_errorhandling_private.h -text
src/h5core/h5u_model.c -text
src/h5core/h5u_readwrite.c -text
src/h5core/h5u_types_private.h -text
src/include/H5.h -text
src/include/H5Block.h -text
src/include/H5Block_readwrite.h -text
src/include/H5Fed.h -text
src/include/H5Fed_adjacency.h -text
src/include/H5Fed_inquiry.h -text
src/include/H5Fed_retrieve.h -text
src/include/H5Fed_store.h -text
src/include/H5Fed_tags.h -text
src/include/H5Part.h -text
src/include/H5_attachments.h -text
src/include/H5_attribs.h -text
src/include/H5hut.h -text
src/include/grephdr -text
src/include/h5core/h5_attach.h -text
src/include/h5core/h5_attribs.h -text
src/include/h5core/h5_core.h -text
src/include/h5core/h5_errno.h -text
src/include/h5core/h5_errorhandling.h -text
src/include/h5core/h5_hdf5.h -text
src/include/h5core/h5_maps.h -text
src/include/h5core/h5_openclose.h -text
src/include/h5core/h5_readwrite.h -text
src/include/h5core/h5_syscall.h -text
src/include/h5core/h5_types.h -text
src/include/h5core/h5b_attribs.h -text
src/include/h5core/h5b_model.h -text
src/include/h5core/h5b_readwrite.h -text
src/include/h5core/h5t_adjacencies.h -text
src/include/h5core/h5t_core.h -text
src/include/h5core/h5t_inquiry.h -text
src/include/h5core/h5t_map.h -text
src/include/h5core/h5t_model.h -text
src/include/h5core/h5t_readwrite.h -text
src/include/h5core/h5t_ref_elements.h -text
src/include/h5core/h5t_retrieve.h -text
src/include/h5core/h5t_storemesh.h -text
src/include/h5core/h5t_tags.h -text
src/include/h5core/h5u_model.h -text
src/include/h5core/h5u_readwrite.h -text
test/H5Block/BlockTestSpecs.txt -text
test/H5Block/H5BlockDissolveGhosts.c -text
test/H5Block/H5BlockParTestScalarField.c -text
test/H5Block/H5BlockParTestScalarField.pbs -text
test/H5Block/H5BlockParTestScalarFieldF.f90 -text
test/H5Block/H5BlockTestAttributes.c -text
test/H5Block/H5BlockTestAttributesF.f90 -text
test/H5Block/Makefile.am -text
test/H5Fed/Makefile.am -text
test/H5Fed/map_tet2globalid.c -text
test/H5Fed/map_triangle2globalid.c -text
test/H5Fed/tetmesh_adjacencies.c -text
test/H5Fed/tetmesh_read.c -text
test/H5Fed/tetmesh_read_tags.c -text
test/H5Fed/tetmesh_write.c -text
test/H5Fed/tetmesh_write1.c -text
test/H5Fed/tetmesh_write2.c -text
test/H5Fed/tetmesh_write_tags.c -text
test/H5Fed/trimesh_2gnuplot.c -text
test/H5Fed/trimesh_adjacencies.c -text
test/H5Fed/trimesh_read.c -text
test/H5Fed/trimesh_write.c -text
test/H5Fed/trimesh_write_dunetest.c -text
test/H5Fed/write_boundary.c -text
test/H5Part/Bench.c -text
test/H5Part/H5ParallelTest.cc -text
test/H5Part/H5PartAndreasTest.cc -text
test/H5Part/H5PartTest.cc -text
test/H5Part/H5PartTestParallel.cc -text
test/H5Part/H5test.cc -text
test/H5Part/H5testF.f -text
test/H5Part/H5testFpar.f90 -text
test/H5Part/Makefile.am -text
test/Makefile.am -text
test/h5_attach_test.c -text
test/h5b_read.c -text
test/h5b_test.c -text
test/h5b_write.c -text
test/h5u_read.c -text
test/h5u_test.c -text
test/h5u_write.c -text
test/params.h -text
test/read.c -text
test/test.c -text
test/testf.F90 -text
test/testframe.c -text
test/testframe.h -text
test/write.c -text
tools/H5BlockBench.c -text
tools/H5PartBench.c -text
tools/H5PartMerge/AUTHORS -text
tools/H5PartMerge/COPYING -text
tools/H5PartMerge/ChangeLog -text
tools/H5PartMerge/INSTALL -text
tools/H5PartMerge/NEWS -text
tools/H5PartMerge/README -text
tools/H5PartMerge/autogen.sh -text
tools/H5PartMerge/configure.ac -text
tools/H5PartMerge/makefile.am -text
tools/H5PartMerge/src/H5merge.cpp -text
tools/H5PartMerge/src/optparse.cpp -text
tools/H5PartMerge/src/optparse.hh -text
tools/Makefile.am -text
tools/README -text
tools/h5PartDcToVtk.cc -text
tools/h5PartSurfaceToVtk.cc -text
tools/h5hutcc.in -text
tools/h5pAttrib.cc -text
tools/h5pToGNUplot.cc -text
tools/homdynToH5p.cc -text
visit_plugins/databases/H5Part/.depend -text
visit_plugins/databases/H5Part/Makefile -text
visit_plugins/databases/H5Part/README.txt -text
visit_plugins/databases/H5Part/avth5partFileFormat.C -text
visit_plugins/databases/H5Part/avth5partFileFormat.h -text
visit_plugins/databases/H5Part/h5part.xml -text
visit_plugins/databases/H5Part/h5partCommonPluginInfo.C -text
visit_plugins/databases/H5Part/h5partEnginePluginInfo.C -text
visit_plugins/databases/H5Part/h5partMDServerPluginInfo.C -text
visit_plugins/databases/H5Part/h5partPluginInfo.C -text
visit_plugins/databases/H5Part/h5partPluginInfo.h -text
visit_plugins/operators/BinnerFilter/.depend -text
visit_plugins/operators/BinnerFilter/Binner.xml -text
visit_plugins/operators/BinnerFilter/BinnerCommonPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerEnginePluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerFilter.C -text
visit_plugins/operators/BinnerFilter/BinnerFilter.h -text
visit_plugins/operators/BinnerFilter/BinnerFilter.java -text
visit_plugins/operators/BinnerFilter/BinnerGUIPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerMakefile -text
visit_plugins/operators/BinnerFilter/BinnerPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerPluginInfo.h -text
visit_plugins/operators/BinnerFilter/BinnerScriptingPluginInfo.C -text
visit_plugins/operators/BinnerFilter/BinnerViewerPluginInfo.C -text
visit_plugins/operators/BinnerFilter/Binnerreplace.txt -text
visit_plugins/operators/BinnerFilter/Makefile -text
visit_plugins/operators/BinnerFilter/PyBinner.C -text
visit_plugins/operators/BinnerFilter/PyBinner.h -text
visit_plugins/operators/BinnerFilter/QvisBinnerWindow.C -text
visit_plugins/operators/BinnerFilter/QvisBinnerWindow.h -text
visit_plugins/operators/BinnerFilter/avtBinnerFilter.C -text
visit_plugins/operators/BinnerFilter/avtBinnerFilter.h -text
visit_plugins/operators/BinnerFilter/icon.xpm -text
visit_plugins/operators/RandomSample/.depend -text
visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.h -text
visit_plugins/operators/RandomSample/H5PartRandomSampleAttributes.java -text
visit_plugins/operators/RandomSample/H5PartRandomSampleCommonPluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleEnginePluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleGUIPluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSamplePluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSamplePluginInfo.h -text
visit_plugins/operators/RandomSample/H5PartRandomSampleScriptingPluginInfo.C -text
visit_plugins/operators/RandomSample/H5PartRandomSampleViewerPluginInfo.C -text
visit_plugins/operators/RandomSample/Makefile -text
visit_plugins/operators/RandomSample/PyH5PartRandomSampleAttributes.C -text
visit_plugins/operators/RandomSample/PyH5PartRandomSampleAttributes.h -text
visit_plugins/operators/RandomSample/QvisH5PartRandomSampleWindow.C -text
visit_plugins/operators/RandomSample/QvisH5PartRandomSampleWindow.h -text
visit_plugins/operators/RandomSample/RandomSample.xml -text
visit_plugins/operators/RandomSample/avtH5PartRandomSampleFilter.C -text
visit_plugins/operators/RandomSample/avtH5PartRandomSampleFilter.h -text
visit_plugins/operators/RandomSample/icon.xpm -text
.gitignore
+82
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@@ -0,0 +1,82 @@
/H5hut
/INSTALL
/Makefile
/Makefile.in
/aclocal.m4
/autom4te.cache
/build
/config.guess
/config.h
/config.h.in
/config.log
/config.status
/config.sub
/configure
/depcomp
doc/Makefile
doc/Makefile.in
/install-sh
/libtool
/ltmain.sh
/m4
/missing
src/.deps
src/C++/Makefile
src/C++/Makefile.in
src/C/.deps
src/C/Makefile
src/C/Makefile.in
src/C/libH5hutC.a
src/Fortran/.deps
src/Fortran/Makefile
src/Fortran/Makefile.in
src/Makefile
src/Makefile.in
src/h5core/.deps
src/h5core/Makefile
src/h5core/Makefile.in
src/h5core/libH5hut.a
src/include/H5hutF.h
src/lib
/stamp-h1
/svn-prop.tmp
test/.deps
test/H5Block/H5BlockParTestScalarField
test/H5Block/H5BlockTestAttributes
test/H5Block/Makefile
test/H5Block/Makefile.in
test/H5Fed/.deps
test/H5Fed/Makefile
test/H5Fed/Makefile.in
test/H5Fed/large_tet.h5
test/H5Fed/simple_tet.h5
test/H5Fed/simple_triangle.h5
test/H5Fed/small_tet.h5
test/H5Fed/tetmesh_adjacencies
test/H5Fed/tetmesh_read
test/H5Fed/tetmesh_read_tags
test/H5Fed/tetmesh_write
test/H5Fed/tetmesh_write2
test/H5Fed/tetmesh_write_tags
test/H5Fed/trimesh_adjacencies
test/H5Fed/trimesh_read
test/H5Fed/trimesh_write
test/H5Fed/trimesh_write_dunetest
test/H5Part/Bench
test/H5Part/H5PartAndreasTest
test/H5Part/H5PartTestP
test/H5Part/H5test
test/H5Part/Makefile
test/H5Part/Makefile.in
test/Makefile
test/Makefile.in
test/h5_attach.h5
test/h5_attach_test
test/h5b_test
test/h5u_test
tools/.deps
tools/Makefile
tools/Makefile.in
tools/h5PartDcToVtk
tools/h5PartSurfaceToVtk
tools/h5hutcc
AUTHORS
-1
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@@ -6,6 +6,5 @@ Benedikt Oswald (PSI)
Wes Bethel (NERSC/LBNL)
John Shalf (NERSC/LBNL)
Cristina Siegerist (NERSC/LBNL)
Mark Howison (NERSC/LBNL)
Please use h5part@lists.psi.ch for communicaion.
COPYING
+1 -1
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@@ -1,6 +1,6 @@
*** Copyright Notice ***
H5Part Copyright (c) 2006-2009, The Regents of the University of California,
H5hut Copyright (c) 2006-2010, The Regents of the University of California,
through Lawrence Berkeley National Laboratory (subject to receipt of any
required approvals from the U.S. Dept. of Energy) and the Paul Scherrer
Institut (Switzerland). All rights reserved.
GNUmakefile.orig
-133
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@@ -1,133 +0,0 @@
UNAME := $(shell uname | perl -pe 's/(sn\d\d\d\d|jsimpson)/UNICOS\/mk/')
# for host specific options
HOST := $(shell hostname)
# for processor-specific options
ifeq ($(UNAME), Linux)
PROC := $(shell uname -p)
endif
CXX = c++
CC = cc
H5HOME = /usr/local/hdf5
CFLAGS = -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# MacOS-X Serial
ifeq ($(UNAME), Darwin)
ifeq ($(PARALLEL), yes)
CXX = g++
CC = mpicc
H5HOME = /usr/local
CFLAGS = -O -g -I$(H5HOME)/include -DPARALLEL_IO
LDFLAGS = -L$(H5HOME)/lib -lmpich -lpmpich -lhdf5 -lz -lm
else
CXX = c++
CC = cc
F90 = xlf
H5HOME = /usr/local
CFLAGS = -O -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif
endif
# SGI MIPS/Irix
ifeq ($(UNAME), IRIX64)
CXX = CC
CC = cc
F90 = f90
ifeq ($(PARALLEL), yes)
H5HOME = $(HDF5_DIR)
CFLAGS = -64 -O3 -I$(H5HOME)/include -DPARALLEL_IO
LDFLAGS = -64 -O3 -L$(H5HOME)/lib -lhdf5 -lz -lmpi -lm
else
H5HOME = /usr/local
CFLAGS = -O3 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif
endif
# AIX/SP-2 Parallel/serial : Seaborg
ifeq ($(UNAME), AIX)
ifeq ($(PARALLEL), yes) # parallel
CXX = mpCC_r
CC = mpxlc_r
# H5HOME = /usr/common/usg/hdf5_64/1.4.5-post2/parallel
H5HOME = /usr/common/usg/hdf5_64/1.6.1/parallel
# /usr/common/usg/hdf5/1.4.4/parallel
H4HOME = /usr/common/usg/hdf/default
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
CFLAGS = -q64 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lsz -lm
else # serial
CXX = xlC
CC = xlc
H5HOME = /usr/common/usg/hdf5/1.4.4/serial
H4HOME = /usr/common/usg/hdf/default
OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
endif
endif
# Linux
ifeq ($(UNAME), Linux)
# if this machine is NERSC/Davinci Altix system
ifeq ($(PROC), ia64)
CC = icc
CXX = icc
ifeq ($(PARALLEL), yes)
# IA64 Linux Parallel
ifeq ($(HOST), davinci)
H5HOME = $(HDF5_PAR)
MPILIB = -lmpi
else
H5HOME = /usr/local
HDF5_PAR_LIB = -L$(H5HOME)/lib -lhdf5 -lz -lm
HDF5_PAR_INCLUDE = -I$(H5HOME)/include
MPIHOME = /usr/local
MPILIB = -lmpich
endif # HOST
CFLAGS = -O3 -DPARALLEL_IO -DH5_HAVE_PARALLEL $(HDF5_PAR_INCLUDE)
LDFLAGS = $(HDF5_PAR_LIB) $(MPILIB)
else # IA64 Linux Serial
CFLAGS = -O3 $(HDF5_INCLUDE)
LDFLAGS = $(HDF5_LIB) -lm
endif # PARALLEL
# else this is standard IA32 linux
else
ifeq ($(PARALLEL), yes)
# Linux Parallel
CC = gcc
CXX = g++
H5HOME = /usr/local
MPIHOME = /usr/local
CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
else # Linux Serial
CXX = g++
CC = gcc
CFLAGS = -O -g -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
endif # !PARALLEL
endif # PROC!ia64
endif # !Linux
ifeq ($(PARALLEL), yes) #parallel
ifdef F90
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest H5PartF.o
else
all: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest
endif
else
ifdef F90
all: H5PartTest H5PartTest.o H5Part.o H5PartF.o
else
all: H5PartTest H5PartTest.o H5Part.o
endif
endif
include rules.make
INSTALL
-437
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@@ -1,437 +0,0 @@
==============================================================================
README file for H5Part configure
==============================================================================
+ 0. HDF5 library
-----------------
Make sure you have a working version of the HDF5 library installed. If you plan
to use parallel I/O you need to use a parallel HDF5 version. Source files and
installation instructions are available from the HDF5 website:
http://www.hdfgroup.org/HDF5/
+ 1. Quick start (If you feel lucky...)
----------------------------------------
For many platforms, where compilers are installed in the "default" location
and all the environment variables are set correctly, it should be sufficient
to type:
./configure [OPTIONS] && make [install]
to have the libraries and test program compiled.
+ 2. Configure line options
----------------------------
To view a full list of configure option, use:
./configure --help
(1) Enable options
--enable-fortran
--enable-parallel
--enable-tools
--enable-python
--enable-64 (only for AIX and Irix)
(2) Setting compilers related variables manually
To assign environment variables (e.g., CC, CFLAGS...), specify them as
VAR=VALUE before running configure. For example, if you are using the bash
shell, you might type:
export CC=gcc
to set the default C compiler. See below for descriptions of some useful
variables.
Compiler environment variables:
CC C compiler command
CXX C++ compiler command
FC Fortran compiler command
MPICC MPI-enabled C compiler command
MPICXX MPI-enabled C++ compiler command
MPIFC MPI-enabled Fortran compiler command
CFLAGS flags to append when invoking the C compiler
Library environment variables:
LDFLAGS flags to append when invoking the linker
(3) Setting prefix for installation manually (by default, the package will
install itself in the 'build' subdirectory of your source directory)
--prefix=PREFIX install files in PREFIX
+ 3. Platform specific settings for compiling libraries & test programs
------------------------------------------------------------------------
Building
make : builds the libraries and test programs
make install: builds and installs
make clean : removes extraneous object files
make distclean : returns configuration to unconfigured state
As tested on hosts:
(0) Franklin <franklin.nersc.gov> (CNL - Cray XT4)
--------------------------------------------------
module add hdf5_par
module add zlib
module add szip
export CC=cc CXX=CC FC=ftn MPICC=cc MPICXX=CC MPIFC=ftn
export LDFLAGS=$HDF5
./configure --enable-fortran --enable-parallel --with-hdf5path=$HDF5_PAR_DIR --with-mpiposix
make install
(1) Davinci <davinci.nersc.gov> (Linux"SUSE"-ia64)
---------------------------------------------------
FIRST THING FIRST!! Type:
module load intel
to have the proper compilers set up for use.
module load hdf5_par
[NOTE: module load hdf5 does not work at this moment.
Possible installation error of HDF5 on Davinci.]
Brief profile:
CC = icc
CXX = icc
FC = ifort
MPICC = icc
MPICXX = icc
MPIFC = ifort
If default doesn't work, try:
For C shell:
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
For Korn or Bourne shell:
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=icc CXX=icc FC=ifort MPICC=icc MPICXX=icc MPIFC=ifort ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
run:
mpirun 2 H5testFpar
mpirun 2 H5PartTestP
NOTE: Number 2 above is a arbitrary number that indicates the number of processes.
(2) Jacquard <jacquard.nersc.gov> (Linux"SUSE"-x86_64)
-------------------------------------------------------
Brief profile:
CC = pathcc
CXX = pathCC
FC = pathf90
MPICC = mpicc
MPICXX = mpicxx
MPIFC = mpif90
If default doesn't work, try:
For C shell:
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
For Korn or Bourne shell:
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=pathcc CXX=pathCC FC=pathf90 MPICC=mpicc MPICXX=mpicxx MPIFC=mpif90 ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
In Jacquard, we need a script to run parallel programs, since Jacquard does not support interactive parallel processing. Instead, we need to submit the task to a queue. A sample script (run_H5testFpar.scr) may look like below:
+++++++++++++++++++++++++++++++++++++++
#!/bin/csh
#PBS -l nodes=1:ppn=2,walltime=00:05:00
#PBS -N H5testFpar
#PBS -o H5testFpar.out
#PBS -e H5testFpar.err
#PBS -q debug
#PBS -A mpccc
#PBS -V
setenv PBS_OWORKDIR /home/H5Part/test
cd $PBS_O_WORKDIR
mpirun -np 2 ./H5testFpar
+++++++++++++++++++++++++++++++++++++++
Then, we need to submit the task to a queue by running:
qsub run_H5testFpar.scr
After processed, the result will appear in H5testFpar.out, and error messages will appear in H5testFpar.err.
(3) Bassi <bassi.nersc.ogv> (AIX5.3.0.0-Power 3)
-------------------------------------------------
FIRST THING FIRST!! Type:
module load gcc
to have the proper compilers set up for use.
Brief profile:
CC = cc_r
CXX = cc_r
FC = xlf_r
MPICC = mpcc_r
MPICXX = mpcc_r
MPIFC = mpxlf_r
If default doesn't work, try:
For C shell:
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
For Korn or Bourne shell:
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
For Korn or Bourne shell:
CC=cc_r CXX=cc_r FC=xlf_r MPICC=mpcc_r MPICXX=mpcc_r MPIFC=mpxlf_r ./configure --enable-fortran --enable-parallel && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(ii) Parallel test
run:
unsetenv MP_SINGLE_THREAD
poe ./H5PartTestP -procs 2 -nodes 1
poe ./H5testFpar -procs 2 -nodes 1
For more details on how to run parallel programs on Bassi, go to:
http://www.nersc.gov/nusers/resources/bassi/running_jobs/
(4) Starsky <starsky.lbl.gov> (Darwin8.5.0-PowerPC)
----------------------------------------------------
FIRST THING FIRST!! Set environment variables: (in tcsh)
setenv LD_LIBRARY_PATH /usr/local/g95/lib/gcc-lib/powerpc-apple-darwin8.5.0/4.0.3/
setenv PATH ${PATH}:/usr/local/g95/bin
NOTE: This environment variable setting is specifit to Starsky. It is to make configure find the fortran compiler.
Brief profile:
CC = gcc
CXX = g++
FC = g95
If default doesn't work, try:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(5) Linux AMD64 Visualization group workstations (Linux"SUSE"-x86_64)
---------------------------------------------------------
Brief profile:
CC = gcc
CXX = g++
FC = g95
If default doesn't work, try:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure && make install
And, of course, you should add configure options, such as --enable-fortran --enable-parallel.
On this host, executing:
For C shell:
env CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
For Korn or Bourne shell:
CC=gcc CXX=g++ FC=g95 ./configure --enable-fortran && make install
has functioned correctly.
To run test program, go to test directory:
(i) Serial test
run:
./H5testF
./H5PartTest
(6) Cray XT3 @ CSCS gele
1) modules/3.1.6 9) PrgEnv-pgi/1.4.26 17) xt-lustre-ss/1.4.26
2) MySQL/4.0.26 10) xt-pbs/5.3.4 18) Base-opts/1.4.26
3) acml/3.0 11) xt-service/1.4.26 19) subversion/1.3.2
4) pgi/6.1.4 12) xt-libc/1.4.26 20) zlib/1.2.3
5) totalview/7.2.0 13) xt-os/1.4.26 21) szip/2.0
6) xt-libsci/1.4.26 14) xt-catamount/1.4.26 22) hdf5/1.6.5
7) xt-mpt/1.4.26 15) xt-boot/1.4.26
8) xt-pe/1.4.26 16) xt-crms/1.4.26
CFLAGS="-I$H5HOME/include -DF77_SINGLE_UNDERSCORE" LDFLAGS="-L$H5HOME/lib -L$ZHOME/lib" ./configure --enable-parallel --enable-fortran
(7) merlin00 / merlin3
Currently Loaded Modulefiles:
1) hdf5/hdf5-1.6.5 2) root/root-5.10.00 3) mpi/mpich2-1.0.3-pgi-6.1 4) pgi/pgi_64-6.1
FC=mpif90 ./configure --enable-parallel --enable-fortran
==============================================================================
+ 4. Trouble shooting (Things to check for...)
--------------------------------------------
(0) Have you set the LD_LIBRARY_PATH?
---Some systems require the user to manually set the environment variable, LD_LIBRARY_PATH. To do so:
set the environment variable HDF5ROOT or PHDF5ROOT to point to your installation of HDF5 (serial and/or parallel respectively).
For Korn or Bourne shell:
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${HDF5ROOT}/lib;export LD_LIBRARY_PATH
LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:{PHDF5ROOT}/lib;export LD_LIBRARY_PATH
For C shell:
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${HDF5ROOT}/lib
setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:${PHDF5ROOT}/lib
Note that the values of HDF5ROOT & PHDF5ROOT will be in the "summary" section when you run configure.
Not properly set LD_LIBRARY_PATH value may result in a runtime error:
./H5PartTest: error while loading shared libraries: libhdf5.so.0: cannot open shared object file: No such file or directory
(1) Are the compilers set correctly?
---Check with: which COMPILER
(2) Have you installed HDF5?
---You can get it at: http://vis.lbl.gov/Research/AcceleratorSAPP/index.html
(3) Have you loaded the proper modules?
---It is necessary in Davinci & Bassi, and configure && make install may not work without it.
Makefile.am
+1 -3
View File
@@ -1,8 +1,6 @@
# Trial by Antino Kim
# Top level Makefile.am
ACLOCAL_AMFLAGS = -I m4
SUBDIRS = \
doc \
src \
test \
tools
Makefile.orig
-59
View File
@@ -1,59 +0,0 @@
# This is a very rudimentary multiarchitecture makefile
# You need to uncomment the default block of make variables you need
# Some key things to watch for are the following defines
# -DREGRESSIONTEST : enables a main(){} inside of
# the H5Part.cc file that does simple regression testing.
# -DPARALLEL_IO : If you want to use parallel HDF5, you have to
# enable this. Otherwise, you get only the serial
# implementation of the library.
# MacOS-X Serial
#CXX = c++
#CC = cc
#F90 = xlf
#H5HOME = /usr/local
#CFLAGS = -O -g -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# AIX/SP-2 Parallel : Seaborg
#CXX = mpCC_r
#CC = mpcc_r
#F90 = mpxlf
#H5HOME = /usr/common/usg/hdf5/1.4.4/parallel
#H4HOME = /usr/common/usg/hdf/default
#OPT = -qarch=auto -qtune=auto-qcache=auto -O3 -qhot
#CFLAGS = -g -bmaxdata:800000000 -bmaxstack:256000000 -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -L$(H4HOME)/lib -lz -lm
# Linux Serial
#CXX = g++
#CC = gcc
#F90 = g77 # or could be pgif90
#CFLAGS = -O -g -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# Linux Jacquard
CC = mpicc
CXX = mpicxx
F90 = mpif90
H5HOME = /usr/common/usg/hdf5/1.6.3/parallel
CFLAGS = -O2 -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lz -lm
# Linux Parallel
#CC = gcc
#CXX = g++
#F90 = g77
#H5HOME = /usr/local
# /usr/common/usg/hdf5/1.6.3/parallel
#MPIHOME = /usr/local
#CFLAGS = -O -g -DPARALLEL_IO -DH5_HAVE_PARALLEL -I$(H5HOME)/include
#LDFLAGS = -L$(H5HOME)/lib -lhdf5 -lmpich -lrt -lz -lm
all: H5PartTest H5PartTest.o H5Part.o
parallel: H5PartTest H5PartTest.o H5Part.o H5PartTestParallel H5PartAndreasTest # parallel regression tests
fortran: H5PartF.o # fortran bindings
include rules.make
NEWS
-282
View File
@@ -1,282 +0,0 @@
#### H5PART 1.6 ##############################################################
Updated Documentation
---------------------
The Fortran API has been added to the doxygen documentation. Most entries have
a reference to their respective C API call.
Regression Test Suite
---------------------
The test subdirectory has been reorganized to include a systematic series
of regression tests of common use cases for the API. The goal is to have both
complete coverage of the API (every call is exercised) and testing of some
unlikely or unsuspected values and cases.
Currently, the C test covers the entire H5Part API and the Fortran test is
still in development.
Benchmark Utilities
-------------------
Two benchmarking utilities, H5PartBench and H5BlockBench, have been added to
the tools collection. Both require the parallel library and have functionality
and syntax similar to the IOR benchmark:
http://sourceforge.net/projects/ior-sio/
File Mode Flags
---------------
Previously, the only flags used were H5PART_READ, H5PART_WRITE, and
H5PART_APPEND, and these were mutually exclusive. Additional flags have been
added to select the underlying virtual file driver (VFD) that HDF5 uses in
parallel mode and to accommodate the lustre filesystem:
H5PART_VFD_MPIPOSIX (use the MPI-POSIX driver, which bypasses MPI-IO)
H5PART_VFD_MPIIO_IND (use MPI-IO in independent mode)
H5PART_FS_LUSTRE (activate H5P tunings for the lustre stripe size)
These flags can be specified using the typical bitwise OR method, e.g.
char flag = H5PART_WRITE | H5PART_VFD_MPIPOSIX | H5PART_FS_LUSTRE;
will select write mode with these two additional options.
The parallel library now defaults to using the MPI-IO collective mode driver
(previously it used independent mode). The collective buffering algorithm in
the Cray XT4/5 environment has been substantially improved in the last year,
and defaulting to collective mode allows us to take advantage of these
improvements automatically.
There are also new open calls H5PartOpenAlign and H5PartOpenParallelAlign that
take an additional 'alignment' value. This value is passed to HDF5 and used to
pad out objects so that they align to filesystem boundaries. For instance, it
would make sense to use the stripe size as the alignment value when writing to
a lustre filesystem.
Unified 'View' Model
--------------------
Views are now supported in both read and write mode (previously only supported
in read mode). It is possible to specify non-sensical views: you could for
instance specify a read view that is larger than the dataset on disk. Or you
could create a write view that is larger than the data in memory. In those
cases, you will encounter an error when you try to perform a read or write
operation on a dataset.
There are two new methods for selecting views. H5PartSetNumParticlesStrided
selects a view with $n$ particles per processor, but such that the data in
memory is expected to have a 'stride' factor. For instance, if you have
particle data with fields $x$ and $y$ and a single array with entries
$x1,y1,x2,y2...$, then the stride factor is 2. Striding works for both reads
and writes and only affects the view of memory: individual fields are still
stored as individual arrays on disk.
The second new method is H5PartSetViewIndices, which allows for point
selections of datasets. You can pass a list of indices for the points you
want to select. This is useful, for instance, when interfacing with FastBit
to perform queries that select a small subset of non-contiguous particles.
Because views are now supported on write, it is possible to write a dataset
using multiple 'passes' or to leave some values unwritten.
Also, all views are now *inclusive*, so that a view of (0,9) corresponds
to the 10 items 0, 1, 2, ... 9.
Internal Handling of Dataspaces
-------------------------------
H5PartSetNumParticles and H5PartSetNumParticlesStrided now share the same
HDF5 dataspace state in the H5PartFile struct with the calls that modify
the view (H5PartSetView etc.). Previously, the memory and disk dataspaces
were regenerated from the view on every read access, which was unnecessary.
Autogeneration of API Calls
---------------------------
Python scripts have been added to automatically generate read/write call
variants for different data types.
Renamed Fortran Include
-----------------------
The automake system no longer greps the *F90.inc files to generate an include
called 'H5Part.inc'. Instead, the *F90.inc files have been renamed to *.f90,
and awk is used to generate an 'H5PartF.h' file (the same naming convention
as in MPI's 'mpif.h').
The change to *.f90 was necessary to facilitate integration of the Fortran
API into doxygen. Note that the *.f90 files will not compile, nor can they
be included directly. Simply use
include 'H5PartF.h'
in your Fortran code to include all the definitions for Fortran H5Part/H5Block
calls.
64 Char Limit on Dataset Names
------------------------------
Previously, a user could overrun internal buffers for dataset names. Now, a
fixed limit of 64 chars is imposed. Dataset names that are longer than this are
truncated and a warning is printed. We expect that most users are using
short canoncical names like x, px, id, etc.
Changes to Existing API
-----------------------
The H5BlockGetFieldInfo and H5BlockGetFieldInfoByName calls now both include
a parameter for the 'type' of the field.
#### H5PART 1.4 ##############################################################
Error Handling
--------------
Now all functions, in which an error could occure, are returning a
value. This value is either a 64bit integer or a pointer.
A negative 64bit integer as result indicates an error. Values >= 0
indicates successfull execution. This is similiar to the convention
used in UNIX system calls, but we do not return -1 but the error
number (which is always negative).
For functions returning a pointer the NULL-pointer is used to indicate
an error. You can call the function H5PartGetErrno() to get the error
number. For the time being there is no strerror(3) or perror(3)
equivalent.
API Changes
-----------
There are several changes in the API of H5Part. The biggest change is
a side-effect of the implementation of strict error handling. The
impact to the existing C/C++ code is very small. But now you *can*
and *should* implement some kind of error handling. The simplest
error handling is to set an error handler which aborts the program as
soon as an error occured.
The next "biggest" change is the use of H5Part types instead of "long
long" and "double". The replacement of "long long" is "h5part_int64_t"
and for "double" "h5part_float64_t". This change has now effect in
Fortran.
In some functions the argument type changed from "int" to
"h5part_int64_t". Since on most systems "int" is a 32bit integer,
calls to these functions must be adapted to the new API. In C/C++ the
compiler will complain about it. But in Fortran you will *not* get an
error message.So, you must check your Fortran code carefully.
Changes in detail (not listed are functions where only the return
type changed from any to "h5part_int64_t"):
New API Changes to old API
h5part_int64_t void
H5PartSetNumParticles (
H5PartFile *f,
h5part_int64_t nparticles long long
);
h5part_int64_t int
H5PartWriteDataFloat64 (
H5PartFile *f,
char *name,
h5part_float64_t *dta double
);
h5part_int64_t int
H5PartWriteDataInt64 (
H5PartFile *f,
char *name,
h5part_int64_t *dta long long
);
h5part_int64_t void
H5PartSetStep (
H5PartFile *f,
h5part_int64_t step int
);
h5part_int64_t void
H5PartSetView (
H5PartFile *f,
h5part_int64_t start, long long
h5part_int64_t end long long
);
h5part_int64_t int
H5PartGetView (
H5PartFile *f,
h5part_int64_t *start, long long
h5part_int64_t *end long long
);
h5part_int64_t int
H5PartReadDataFloat64 (
H5PartFile *f,
char *name,
h5part_float64_t *dta double
);
h5part_int64_t int
H5PartReadDataInt64 (
H5PartFile *f,
char *name,
h5part_int64_t *dta long long
);
h5part_int64_t void
H5PartReadParticleStep (
H5PartFile *f,
h5part_int64_t step, int
h5part_float64_t *x, double
h5part_float64_t *y, double
h5part_float64_t *z, double
h5part_float64_t *px, double
h5part_float64_t *py, double
h5part_float64_t *pz, double
h5part_int64_t *id long long
);
New functions:
h5part_int64_t
H5PartSetVerbosityLevel (
unsigned int
);
h5part_int64_t
H5PartSetErrorHandler (
h5part_error_handler handler
);
h5part_int64_t
H5PartGetErrno (
void
);
h5part_int64_t
H5PartDefaultErrorHandler (
const char *funcname,
const h5part_int64_t eno,
const char *fmt,
...
);
h5part_int64_t
H5PartAbortErrorHandler (
const char *funcname,
const h5part_int64_t eno,
const char *fmt,
...
);
Removed functions:
int
H5PartFileIsValid (
H5PartFile *f
);
README
-29
View File
@@ -1,29 +0,0 @@
Website:
http://vis.lbl.gov/Research/AcceleratorSAPP/
Particle based simulations of accelerator beam-lines, especially in six
dimensional phase space, generate vast amounts of data. Even though a subset of
statistical information regarding phase space or analysis needs to be preserved,
reading and writing such enormous restart files on massively parallel
supercomputing systems remains challenging.
H5Part is a very simple data storage schema and provides an API that simplifies
the reading/writing of the data to the HDF5 file format. An important
foundation for a stable visualization and data analysis environment is a stable
and portable file storage format and its associated APIs. The presence of a
"common file storage format," including associated APIs, will help foster a
fundamental level of interoperability across the project's software
infrastructure. It will also help ensure that key data analysis capabilities
are present during the earliest phases of the software development effort.
H5Part is built on top of the HDF5 (Hierarchical Data Format). HDF5 offers a
self-describing machine-independent binary file format that supports scalable
parallel I/O performance for MPI codes on a variety of supercomputing systems,
and works equally well on laptop computers. The API is available for C, C++, and
Fortran codes. The H5Part file format and APIs enable disparate research groups
with different simulation implementations to transparently share datasets and
data analysis tools. For instance, the common file format will enable groups
that depend on completely different simulation implementations to share data
analysis tools.
autogen.sh
+26 -24
View File
@@ -1,46 +1,48 @@
#!/bin/sh
# Run this to generate all the initial makefiles, etc.
ACLOCAL_FLAGS="-I m4 $ACLOCAL_FLAGS"
LIBTOOLIZE_FLAGS="--force $LIBTOOLIZE_FLAGS"
AUTOMAKE_FLAGS="--add-missing --copy --foreign $AUTOMAKE_FLAGS"
LIBTOOLIZE=`which libtoolize`
if [ "$LIBTOOLIZE" = "" ]; then
LIBTOOLIZE=`which glibtoolize`
fi
if [ "$LIBTOOLIZE" = "" ]; then
echo "libtoolize not found" 1>&2
exit 1
fi
echo "+ making misc files ..."
touch NEWS README AUTHORS ChangeLog
echo
echo
$LIBTOOLIZE $LIBTOOLIZE_FLAGS || {
echo "libtoolize failed"
exit 1
}
echo
echo "+ running aclocal ..."
aclocal $ACLOCAL_FLAGS || {
echo
echo "aclocal failed - check that all needed development files are present on system"
exit 1
echo "aclocal failed - check that all needed development files are present on system"
exit 1
}
echo
echo
echo
echo
echo "+ running autoheader ... "
autoheader || {
echo
echo "autoheader failed"
exit 1
echo "autoheader failed"
exit 1
}
echo
echo
echo
echo "+ running autoconf ... "
autoconf || {
echo
echo "autoconf failed"
exit 1
echo "autoconf failed"
exit 1
}
echo
echo
echo
echo "+ running automake ... "
automake -a -c --foreign || {
echo
echo "automake failed"
exit 1
automake $AUTOMAKE_FLAGS || {
echo "automake failed"
exit 1
}
echo
echo
echo
config.guess
Vendored
-1469
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File diff suppressed because it is too large Load Diff
config.h.in
-99
View File
@@ -1,99 +0,0 @@
/* config.h.in. Generated from configure.ac by autoheader. */
/* Define to 1 if you have the <inttypes.h> header file. */
#undef HAVE_INTTYPES_H
/* Define to 1 if you have the <memory.h> header file. */
#undef HAVE_MEMORY_H
/* Define to 1 if you have the <stdint.h> header file. */
#undef HAVE_STDINT_H
/* Define to 1 if you have the <stdlib.h> header file. */
#undef HAVE_STDLIB_H
/* Define to 1 if you have the <strings.h> header file. */
#undef HAVE_STRINGS_H
/* Define to 1 if you have the <string.h> header file. */
#undef HAVE_STRING_H
/* Define to 1 if you have the <sys/stat.h> header file. */
#undef HAVE_SYS_STAT_H
/* Define to 1 if you have the <sys/types.h> header file. */
#undef HAVE_SYS_TYPES_H
/* Define to 1 if you have the <unistd.h> header file. */
#undef HAVE_UNISTD_H
/* "" */
#undef MY_BUILD_CPU
/* "" */
#undef MY_BUILD_OS
/* "" */
#undef MY_BUILD_VENDOR
/* "" */
#undef MY_GNUNAME
/* "" */
#undef MY_UNAME
/* Name of package */
#undef PACKAGE
/* Define to the address where bug reports for this package should be sent. */
#undef PACKAGE_BUGREPORT
/* Define to the full name of this package. */
#undef PACKAGE_NAME
/* Define to the full name and version of this package. */
#undef PACKAGE_STRING
/* Define to the one symbol short name of this package. */
#undef PACKAGE_TARNAME
/* Define to the version of this package. */
#undef PACKAGE_VERSION
/* Define to 1 if you have the ANSI C header files. */
#undef STDC_HEADERS
/* Enable extensions on AIX 3, Interix. */
#ifndef _ALL_SOURCE
# undef _ALL_SOURCE
#endif
/* Enable GNU extensions on systems that have them. */
#ifndef _GNU_SOURCE
# undef _GNU_SOURCE
#endif
/* Enable threading extensions on Solaris. */
#ifndef _POSIX_PTHREAD_SEMANTICS
# undef _POSIX_PTHREAD_SEMANTICS
#endif
/* Enable extensions on HP NonStop. */
#ifndef _TANDEM_SOURCE
# undef _TANDEM_SOURCE
#endif
/* Enable general extensions on Solaris. */
#ifndef __EXTENSIONS__
# undef __EXTENSIONS__
#endif
/* Version number of package */
#undef VERSION
/* Define to 1 if on MINIX. */
#undef _MINIX
/* Define to 2 if the system does not provide POSIX.1 features except with
this defined. */
#undef _POSIX_1_SOURCE
/* Define to 1 if you need to in order for `stat' and other things to work. */
#undef _POSIX_SOURCE
config.sub
Vendored
-1563
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File diff suppressed because it is too large Load Diff
configure-crayxt
-18
View File
@@ -1,18 +0,0 @@
#!/bin/sh
./configure \
$@ \
--enable-parallel \
--enable-fortran \
--enable-tools \
CC=cc CXX=CC FC=pgf90 \
MPICC=cc MPICXX=CC MPIFC=ftn
sed -e 's/pgf90/ftn/g' <Makefile > newMakefile
mv newMakefile Makefile
sed -e 's/pgf90/ftn/g' <src/Makefile > newMakefile
mv newMakefile src/Makefile
sed -e 's/pgf90/ftn/g' <test/Makefile > newMakefile
mv newMakefile test/Makefile
sed -e 's/pgf90/ftn/g' <tools/Makefile > newMakefile
mv newMakefile tools/Makefile
configure.ac
+260 -478
View File
@@ -1,18 +1,25 @@
# Every configure script must call AC_INIT before doing anything else.
# AC_INIT (package, version, [bug-report], [tarname])
AC_INIT([H5Part], [1.6.0], [h5part@lists.psi.ch], H5Part)
AC_INIT([H5hut], [1.99.6], [h5part@lists.psi.ch], H5hut)
# Ensure that a recent enough version of Autoconf is being used.
# If the version of Autoconf being used to create configure is earlier than version,
# print an error message to the standard error output and do not create configure.
#AC_PREREQ(2.59)
AC_PREREQ(2.60)
# should be called right after AC_INIT.
# configure scripts can create a C header file containing `#define' directives.
# The AC_CONFIG_HEADERS macro selects this kind of output.
AC_CONFIG_HEADER(config.h)
AC_CONFIG_HEADERS(config.h)
AC_CONFIG_MACRO_DIR([m4])
# AM_INIT_AUTOMAKE is required to use autoconf with automake
AM_INIT_AUTOMAKE
BUILD_LIBS='libH5hut'
USE_C='yes'
###############################################################################
################# --enable-xxx and --with-xxx Argument ########################
@@ -21,68 +28,44 @@ AC_CONFIG_HEADER(config.h)
AC_ARG_ENABLE(
[debug],
[AC_HELP_STRING([--enable-debug],
[Compile with debug support [default=no]])],
[Compile with debug flags [default=no]])],
[USE_DEBUG=$enableval])
AC_ARG_ENABLE(
[shared],
[AC_HELP_STRING([--enable-shared],
[Compile with shared library support [default=no]])],
[USE_SHARED=$enableval])
AC_ARG_ENABLE(
[64],
[AC_HELP_STRING([--enable-64],
[Compile using 64-bit flags [default=no]])],
[USE_64=$enableval])
[c],
[AC_HELP_STRING([--enable-c],
[Compile the C interface [default=yes]])],
[USE_C=$enableval])
AC_ARG_ENABLE(
[fortran],
[AC_HELP_STRING([--enable-fortran],
[AC_HELP_STRING([--enable-fortran],
[Compile the Fortran interface [default=no]])],
[USE_FORTRAN=$enableval])
[USE_FORTRAN=$enableval])
AC_ARG_ENABLE(
[parallel],
[AC_HELP_STRING([--enable-parallel],
[AC_HELP_STRING([--enable-parallel],
[Compile the MPI/IO interface [default=no]])],
[USE_PARALLEL=$enableval])
AC_ARG_ENABLE(
[tools],
[AC_HELP_STRING([--enable-tools],
[Compile h5part tools [default=no]])],
[USE_TOOLS=$enableval])
[USE_PARALLEL=$enableval])
AC_ARG_WITH(
[mpipath],
[AC_HELP_STRING([--with-mpipath],
[path to MPI installation [default=""]])],
[MPIPATH=$withval], [MPIPATH=""])
AC_ARG_WITH(
[hdf5path],
[AC_HELP_STRING([--with-hdf5path],
[hdf5],
[AC_HELP_STRING([--with-hdf5],
[path to HDF5 installation [default=""]])],
[HDF5PATH=$withval], [HDF5PATH=""])
###############################################################################
################# A SIMPLE WORK AROUND TO USE ENV. VARS #######################
###############################################################################
AC_ARG_WITH(
[mpi],
[AC_HELP_STRING([--with-mpi],
[path to MPI installation [default=""]])],
[MPIPATH=$withval;PATH=$MPIPATH/bin:$PATH], [MPIPATH=""])
SAVE_CC=$CC
SAVE_CXX=$CXX
SAVE_FC=$FC
SAVE_MPICC=$MPICC
SAVE_MPICXX=$MPICXX
SAVE_MPIFC=$MPIFC
SAVE_MPILIB=$MPILIB
SAVE_MPIINC=$MPIINC
SAVE_CFLAGS=$CFLAGS
SAVE_FFLAGS=$FFLAGS
SAVE_MPIROOT=$MPIROOT
SAVE_HDF5ROOT=$HDF5ROOT
SAVE_LDFLAGS=$LDFLAGS
AC_ARG_WITH(
[lustre],
[AC_HELP_STRING([--with-lustre],
[path to lustre user API [default=""]])],
[LUSTREPATH=$withval], [LUSTREPATH=""])
###############################################################################
############### PATH SERACH FUNCTION - to be used later... ####################
@@ -96,35 +79,26 @@ SAVE_LDFLAGS=$LDFLAGS
# @enddesc
#@@*/
PATH_Search()
{
eval $1=""
if test $# -lt 4 ; then
h5part_basedir=""
else
h5part_basedir="$4/"
fi
for h5part_place in $2
do
echo -n "looking in $h5part_place ... $ac_c" #1>&6
if test -r "$h5part_basedir$h5part_place/$3" ; then
echo "$ac_t"" found" #1>&6
eval $1="$h5part_place"
break
fi
if test -d "$h5part_basedir$h5part_place/$3" ; then
echo "$ac_t"" found" #1>&6
eval $1="$h5part_place"
break
fi
echo "$ac_t"" no" #1>&6
done
return
PATH_Search() {
eval $1=""
if test $# -lt 4 ; then
h5part_basedir=""
else
h5part_basedir="$4/"
fi
for h5part_place in $2; do
AC_MSG_CHECKING([looking in $h5part_place ... ])
if test -r "$h5part_basedir$h5part_place/$3" ; then
AC_MSG_RESULT([found])
eval $1="$h5part_place"
break
fi
AC_MSG_RESULT([no])
done
return
}
###############################################################################
############# MISC SETTINGS INCLUDING C & C++ COMPILER SETTING ################
###############################################################################
@@ -132,81 +106,66 @@ PATH_Search()
# individual parts host_cpu, host_vendor, and host_os.
AC_CANONICAL_HOST
AC_PROG_MAKE_SET
uname=`uname -s`
if test $uname = "AIX"; then
AC_MSG_CHECKING([if system is AIX])
AC_MSG_RESULT([OK])
# If on AIX, define _ALL_SOURCE. Allows the use of some BSD functions.
# Should be called before any macros that run the C compiler.
AC_AIX
fi
# DAVINCI SPECIFIC!!!
if test `uname -n` = "davinci"; then
echo "DAVINCI SPECIFIC TESTING FOR STDC++ LIBRARY!"
PATH_Search STDCXX_CHECK '/usr/lib64 /usr/lib' libstdc++.a
# if STDCXX_CHECK is set...
if test "$STDCXX_CHECK" = "/usr/lib64"; then
echo "STDCXX setting ..."
echo "STDCXX_CHECK = $STDCXX_CHECK ..."
STDCXX="-L/usr/lib64 -lstdc++"
echo "STDCXX = $STDCXX ..."
elif test "$STDCXX_CHECK" = "/usr/lib"; then
echo "STDCXX setting ..."
echo "STDCXX_CHECK = $STDCXX_CHECK ..."
STDCXX="-L/usr/lib -lstdc++"
echo "STDCXX = $STDCXX ..."
fi
fi
# Determine a C compiler to use.
# Determine a C/C++ compiler to use.
# If CC is not already set in the environment, check for gcc and cc, then
# for other C compilers.
# Set output variable CC to the name of the compiler found.
AC_PROG_CC(pathcc icc cc_r gcc cc)
if test "x$USE_PARALLEL" = "xyes"; then
CCOMPILERS="mpicc cc"
CXXCOMPILERS="mpic++ c++"
else
CCOMPILERS="pgcc pathcc icc gcc cc_r cc"
CXXCOMPILERS="pgcc pathcc icc g++ cc_r c++"
fi
# AC_PROG_CC doesn't pick up cc_r in Bassi. The following AC_PATH_PROGS
# is the fix.
AC_PATH_PROGS([BAS_CC], [cc_r], [], [$PATH])
# if BAS_CC not empty
if test -n "$BAS_CC"; then
echo "CC setting for Bassi ..."
CC=$BAS_CC
echo "CC = $CC ..."
fi
# Determine a C++ compiler to use.
# Check if the environment variable CXX or CCC (in that order) is set;
# if so, then set output variable CXX to its value.
# Otherwise, if the macro is invoked without an argument,
# then search for a C++ compiler under the likely names (first g++ and c++
# then other names).
# If none of those checks succeed, then as a last resort set CXX to g++.
AC_PROG_CXX(pathCC icc cc_r g++ gcc cc)
AC_PROG_CC($CCOMPILERS)
CC=`which $CC`
AC_PROG_CXX($CXXCOMPILERS)
CXX=`which $CXX`
# Use macro to set C99 mode instead of checking for gcc, which breaks with
# parallel builds.
AC_PROG_CC_C99
if test "x$ac_cv_prog_cc_c99" = "xno"; then
AC_MSG_ERROR([Cannot set C compiler to use C99 standard!])
exit 1
fi
# Set output variable INSTALL to the path of a BSD-compatible install program,
# if one is found in the current PATH.
# Otherwise, set INSTALL to `dir/install-sh -c`
AC_PROG_INSTALL
AC_PROG_AWK
# AM_INIT_AUTOMAKE is required to use autoconf with automake
AM_INIT_AUTOMAKE()
AC_PROG_RANLIB
# Disable shared libraries by default: can be enabled with --enable-shared
LT_INIT([disable-shared])
AC_PROG_LIBTOOL
# Default prefix for bindir, etc... (eg >> ./build/bin)
AC_PREFIX_DEFAULT(`pwd`/build)
# Checks for header files.
AC_CHECK_HEADERS([fcntl.h limits.h stdint.h stdlib.h string.h sys/ioctl.h unistd.h])
# Checks for typedefs, structures, and compiler characteristics.
AC_HEADER_STDBOOL
AC_C_INLINE
AC_TYPE_INT16_T
AC_TYPE_INT32_T
AC_TYPE_INT64_T
AC_TYPE_SIZE_T
AC_TYPE_SSIZE_T
AC_TYPE_UINT16_T
AC_TYPE_UINT32_T
AC_TYPE_UINT64_T
AC_CHECK_TYPES([ptrdiff_t])
# Checks for library functions.
AC_FUNC_MALLOC
AC_FUNC_REALLOC
AC_CHECK_FUNCS([memmove memset pow strchr strdup strerror strstr])
# AC_DEFINE_UNQUOTED (variable, value, [description])
# Define the C preprocessor variable variable to value
@@ -218,7 +177,6 @@ AC_DEFINE_UNQUOTED(MY_GNUNAME, "${host_cpu}-${host_vendor}-${host_os}", "")
AC_DEFINE_UNQUOTED(MY_UNAME, "$uname", "")
###############################################################################
######################## CONFIGURE LINE OPTIONS ###############################
###############################################################################
@@ -228,225 +186,109 @@ AC_MSG_CHECKING([if debug is enabled])
if test "X$USE_DEBUG" = "Xyes"; then
AC_MSG_RESULT([yes])
CFLAGS="$CFLAGS -g"
FFLAGS="$FFLAGS -g"
else
AC_MSG_RESULT([no])
fi
# shared library
AC_MSG_CHECKING([if shared libraries are enabled])
if test "X$USE_SHARED" = "Xyes"; then
AC_MSG_RESULT([yes])
CFLAGS="$CFLAGS -fPIC"
FFLAGS="$FFLAGS -fPIC"
else
AC_MSG_RESULT([no])
############################ fortran enabled ##################################
AC_MSG_CHECKING([if C interface enabled])
if test "X$USE_C" = "Xyes"; then
AC_MSG_RESULT([yes])
BINDINGS="$BINDINGS C"
LIB_C="libH5hutC.la"
BUILD_LIBS="$BUILD_LIBS libH5hutC"
BUILD_TESTS="$BUILD_TESTS h5u_test h5b_test"
BUILD_TOOLS="$BUILD_TOOLS h5hutcc h5PartDcToVtk h5PartSurfaceToVtk"
fi
###################### 64-bit compilation enabled #############################
AC_MSG_CHECKING([if 64-bit compilation is enabled])
# If --enable-64 is set in the configure line
if test "X$USE_64" = "Xyes"; then
AC_MSG_RESULT([yes])
if test $uname = "AIX"; then
CFLAGS="$CFLAGS -q64"
FFLAGS="$FFLAGS -q64"
fi
if test $uname = "IRIX64"; then
CFLAGS="$CFLAGS -64"
FFLAGS="$FFLAGS -64 -fPIC -fno-second-underscore"
fi
else
AC_MSG_RESULT([no])
fi
############################ fortran enabled ##################################
AC_MSG_CHECKING([if fortran interface enabled])
if test "X$USE_FORTRAN" = "Xyes"; then
AC_MSG_RESULT([yes])
AC_MSG_RESULT([yes])
BINDINGS="$BINDINGS Fortran"
LIB_FORTRAN="libH5hutF.la"
BUILD_LIBS="$BUILD_LIBS libH5hutF"
AC_PROG_FC(ifort xlf_r pathf90 g95 g90 ftn gfortran)
if test -z "$FC" ; then
AC_MSG_ERROR([Cannot find a fortran compiler!!!])
exit 1
fi
if test "X$USE_PARALLEL" = "Xyes"; then
AC_PROG_FC(mpif90 mpif77)
else
AC_PROG_FC(pgf90 ifort xlf_r pathf90 g95 g90 ftn gfortran)
fi
if test ! $uname = "AIX"; then
FFLAGS="${FFLAGS} -fPIC"
fi
if test -z "$FC" ; then
AC_MSG_ERROR([Cannot find a Fortran compiler!])
exit 1
fi
if test $FC = "g90"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
if test $FC = "g90"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
if test $FC = "g95"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
if test $FC = "g95"; then
FFLAGS="${FFLAGS} -fno-second-underscore"
fi
if test $FC = "gfortran"; then
FFLAGS="${FFLAGS} -DHAVE_GFORTRAN"
fi
AC_MSG_CHECKING([symbol convention in object files])
`cd src/Fortran && rm -f TestUnderscore.o TestUnderscoreC.o TestUnderscore`
`cd src/Fortran && ${FC} ${FFLAGS} -c TestUnderscore.f`
`cd src/Fortran && ${CC} ${CFLAGS} -c TestUnderscoreC.c`
`cd src/Fortran && ${FC} ${FFLAGS} -o TestUnderscore TestUnderscore.o TestUnderscoreC.o`
AC_MSG_CHECKING([symbol convention in object files])
`cd src && rm -f TestUnderscore.o TestUnderscoreC.o TestUnderscore`
`cd src && ${FC} ${FFLAGS} -c TestUnderscore.f`
`cd src && ${CC} ${CFLAGS} -c TestUnderscoreC.c`
`cd src && ${FC} ${FFLAGS} -o TestUnderscore TestUnderscore.o TestUnderscoreC.o -lc`
if test -f src/Fortran/TestUnderscore ; then
UNDERSCORE_H=Underscore.h
`cd src/Fortran && ./TestUnderscore > Underscore.h`
AC_MSG_RESULT([ok])
else
AC_MSG_RESULT([nok])
AC_MSG_ERROR([Cannot determine the symbon convention for Fortran object files!])
exit 1
fi
if test -f src/TestUnderscore ; then
UNDERSCORE_H=Underscore.h
`cd src && ./TestUnderscore > Underscore.h`
AC_MSG_RESULT([ok])
else
AC_MSG_RESULT([nok])
AC_MSG_ERROR([Cannot build fortran executables!!!])
exit 1
fi
else
AC_MSG_RESULT([no])
AC_MSG_RESULT([no])
fi
######################## parallel interface enabled ###########################
AC_MSG_CHECKING([if parallel interface enabled])
if test "X$USE_PARALLEL" = "Xyes"; then
AC_MSG_RESULT([yes])
AC_MSG_RESULT([yes])
CFLAGS="${CFLAGS} -DPARALLEL_IO -DH5_HAVE_PARALLEL -DMPICH_IGNORE_CXX_SEEK"
CFLAGS="${CFLAGS} -DPARALLEL_IO -DMPICH_IGNORE_CXX_SEEK"
AC_MSG_CHECKING([if we can compile MPI code without setting flags])
AC_TRY_LINK([#include "mpi.h"], [
MPI_Comm comm;
int n;
MPI_Comm_size( comm, &n ); ],
[echo 'yes'; r='yes'], [echo "no"; r='no'] )
AC_MSG_CHECKING([if we can compile MPI code without setting flags])
AC_TRY_LINK([#include "mpi.h"], [
MPI_Comm comm;
int n;
MPI_Comm_size( comm, &n ); ],
[AC_MSG_RESULT([yes]); r='yes'], [AC_MSG_RESULT([no]); r='no'] )
if test "X$r" = "Xno"; then
AC_PATH_PROGS([MPICC], [mpicc mpcc_r], [], [$PATH])
AC_PATH_PROGS([MPICXX], [mpicxx mpcc_r], [], [$PATH])
if test -z "$MPICC" -o -z "$MPICXX"; then
AC_MSG_CHECKING([for MPI root ])
AC_MSG_RESULT([])
if test -n "$MPIROOT"; then
P=${MPIROOT}
elif test -n "$MPIHOME"; then
P=${MPIHOME}
elif test -n "$MPIPATH"; then
P=${MPIPATH}
else
P=''
P="$P /usr"
P="$P /usr/local"
P="$P /usr/local/mpi"
P="$P /usr/local/packages/mpi"
P="$P /usr/local/mpich2"
P="$P /usr/local/mpich"
P="$P /opt/xt-mpt/default/mpich2-64/P2"
fi
PATH_Search MPIROOT "$P" include/mpi.h
if test ! -n "$MPIROOT"; then
AC_MSG_ERROR([Cannot determine MPI root!!!])
exit 1
fi
if test -e "${MPIROOT}/bin/mpicc"; then
MPICC=${MPIROOT}/bin/mpicc
fi
if test -e "${MPIROOT}/bin/mpicxx"; then
MPICXX=${MPIROOT}/bin/mpicxx
fi
if test "X$r" = "Xno"; then
AC_MSG_ERROR([MPI wrapper can't compile or link MPI program! Please set the INCLUDE and LIBS variables manually.])
exit 1
fi
if test -z "$MPICC" -o -z "$MPICXX"; then
MPIINC="${MPIINC} -I${MPIROOT}/include"
FFLAGS="${FFLAGS} -I${MPIROOT}/include"
AC_MSG_CHECKING([for name of MPI lib ])
if test -e ${MPIROOT}/lib/libmpi.a; then
MPILIB="-L${MPIROOT}/lib -lmpi"
elif test -e ${MPIROOT}/lib/libmpi.so; then
MPILIB="-L${MPIROOT}/lib -lmpi"
elif test -e ${MPIROOT}/lib/libmpich.a; then
MPILIB="-L${MPIROOT}/lib -lmpich"
elif test -e ${MPIROOT}/lib/libmpich.so; then
MPILIB="-L${MPIROOT}/lib -lmpich"
else
AC_MSG_RESULT([not found])
exit 1
fi
AC_MSG_RESULT([${MPILIB}])
TPTARGET="${TPTARGET} H5PartTestP H5PartAndreasTest Bench"
TBTARGET="${TBTARGET} H5BlockTestAttributes"
TBTARGET="${TBTARGET} H5BlockParTestScalarField"
# parallel + fortran
if test "X$USE_FORTRAN" = "Xyes"; then
TPTARGET="${TPTARGET} H5testFpar"
TBTARGET="${TBTARGET} H5BlockParTestScalarFieldF"
fi
if test -n "$MPICC"; then
CC=${MPICC}
fi
if test -n "$MPICXX"; then
CXX=${MPICXX}
fi
fi
H5P_LIB_NAME="-lpH5Part"
MTARGET="libpH5Part.a"
TTARGET="test"
# parallel + fortran
if test "X$USE_FORTRAN" = "Xyes"; then
AC_PATH_PROGS([MPIFC], [mpxlf_r mpif90], [], [$PATH])
FFLAGS="${FFLAGS} -DPARALLEL_IO"
if test -z "${MPIFC}" ; then
if test -e "${MPIROOT}/bin/mpif90"; then
MPIFC=${MPIROOT}/bin/mpif90
fi
fi
# if MPIFC empty
if test ! -n "$MPIFC"; then
AC_MSG_CHECKING([ No MPIFC detected. Setting MPIFC to FC.])
MPIFC=$FC
echo "MPIFC = $MPIFC ..."
fi
if test -n "$MPIFC"; then
FC=${MPIFC}
fi
H5P_LIB_NAME="-lpH5PartF"
MTARGET="${MTARGET} libpH5PartF.a"
TTARGET="${TTARGET} testf"
fi
else # --enable-parallel=no
AC_MSG_RESULT([no])
AC_MSG_RESULT([no])
H5P_LIB_NAME="-lH5Part"
MTARGET="libH5Part.a"
TTARGET="test"
TPTARGET="${TPTARGET} H5test"
TBTARGET="${TBTARGET} H5BlockTestAttributes"
if test "X$USE_FORTRAN" = "Xyes"; then
H5P_LIB_NAME="-lH5PartF"
MTARGET="${MTARGET} libH5PartF.a"
TTARGET="${TTARGET} testf"
fi
fi
AC_MSG_CHECKING([whether tools are enabled])
if test "X$USE_TOOLS" = "Xyes"; then
AC_MSG_RESULT([yes])
BUILD_TOOLS="h5pAttrib h5pToGNUplot homdynToH5p"
# tools + parallel
if test "X$USE_PARALLEL" = "Xyes"; then
BUILD_TOOLS="${BUILD_TOOLS} H5PartBench H5BlockBench"
fi
else
AC_MSG_RESULT([no])
if test "X$USE_FORTRAN" = "Xyes"; then
TPTARGET="${TPTARGET} H5testF"
TBTARGET="${TBTARGET} H5BlockTestAttributesF"
fi
fi
###############################################################################
@@ -455,165 +297,109 @@ fi
AC_MSG_CHECKING([for HDF5 root ])
AC_MSG_RESULT([])
if test -n "${HDF5ROOT}"; then
P=${HDF5ROOT}
if test -n "${HDF5PATH}" ; then
P=${HDF5PATH}
elif test -n "${HDF5ROOT}"; then
P=${HDF5ROOT}
elif test -n "${HDF5HOME}" ; then
P=${HDF5HOME}
elif test -n "${HDF5PATH}" ; then
P=${HDF5PATH}
P=${HDF5HOME}
elif test -n "${HDF5_DIR}" ; then
P=${HDF5_DIR}
else
P=''
P="$P /usr"
P="$P /usr/local"
P="$P /usr/local/hdf5"
P="$P /usr/local/packages/hdf5"
P="$P /apps/hdf5"
if test "X$USE_PARALLEL" = "Xyes"; then
P="$P /usr/local/phdf5"
P="$P /usr/local/hdf5/hdf5_par"
if test "X$USE_64" = "Xyes"; then
P="$P /usr/common/usg/hdf5/64/default/parallel"
else
P="$P /usr/common/usg/hdf5/32/default/parallel"
fi
else
P="$P /usr/local/hdf5/hdf5_serial"
if test "X$USE_64" = "Xyes"; then
P="$P /usr/common/usg/hdf5/64/default/serial"
else
P="$P /usr/common/usg/hdf5/32/default/serial"
fi
fi
P=''
P="$P /usr"
P="$P /usr/local"
P="$P /usr/local/hdf5"
P="$P /usr/local/packages/hdf5"
P="$P /apps/hdf5"
P="$P /opt/hdf5"
fi
PATH_Search HDF5ROOT "$P" include/hdf5.h
if test -z "$HDF5ROOT"; then
AC_MSG_ERROR([Cannot determine HDF5 root!!!])
exit 1
AC_MSG_ERROR([Cannot find an HDF5 library!])
exit 1
fi
INCLUDES="$INCLUDES -I$HDF5ROOT/include"
LDFLAGS="$LDFLAGS -L$HDF5ROOT/lib"
LIBS="$LIBS -lhdf5"
AC_MSG_CHECKING([if we need to link to libsz ])
if test -n "$HDF5ROOT"; then
if test -f $HDF5ROOT/lib/libsz.a; then
AC_MSG_RESULT([yes])
SZLIB="-L$HDF5ROOT/lib/ -lsz"
else
AC_MSG_RESULT([no])
SZLIB=""
fi
if test -f $HDF5ROOT/lib/libsz.a; then
AC_MSG_RESULT([yes])
LDFLAGS="$LDFLAGS -L$HDF5ROOT/lib"
LIBS="$LIBS -lsz"
else
AC_MSG_RESULT([no])
fi
fi
AC_MSG_CHECKING([for static zlib root ])
echo
PATH_Search ZLIBROOT '/apps/zlib' lib/libz.a
if test -n "$ZLIBROOT"; then
LDFLAGS="$LDFLAGS -L$ZLIBROOT/lib"
AC_MSG_CHECKING([for lustre API ])
AC_MSG_RESULT([])
if test -n "${LUSTREPATH}"; then
P=${LUSTREPATH}
elif test -n "${LUSTREROOT}" ; then
P=${LUSTREROOT}
elif test -n "${LUSTREHOME}" ; then
P=${LUSTREHOME}
elif test -n "${LUSTRE_DIR}" ; then
P=${LUSTRE_DIR}
else
P=''
P="$P /usr"
P="$P /usr/local"
P="$P /usr/local/lustre"
P="$P /opt/lustre"
fi
PATH_Search LUSTREROOT "$P" usr/include/lustre/liblustreapi.h
if test -z "$LUSTREROOT"; then
AC_MSG_WARN([Couldn't locate the lustre API... building without support for lustre striping!])
else
CFLAGS="$CFLAGS -DH5_USE_LUSTRE"
INCLUDES="$INCLUDES -I$LUSTREROOT/usr/include"
LDFLAGS="$LDFLAGS -L$LUSTREROOT/usr/lib"
LIBS="$LIBS -llustreapi"
fi
FCFLAGS=${FFLAGS}
CXXFLAGS=${CFLAGS}
###############################################################################
#################### MISC SETTINGS - path, flags, etc #########################
###############################################################################
H5P_LIB_LOC=`pwd`/src
###############################################################################
################# A SIMPLE WORK AROUND TO USE ENV. VARS #######################
###############################################################################
#if there was an external input for the variable...
if test -n "$SAVE_CC"; then
CC=$SAVE_CC
fi
if test -n "$SAVE_CXX"; then
CXX=$SAVE_CXX
fi
if test -n "$SAVE_FC"; then
FC=$SAVE_FC
fi
if test -n "$SAVE_MPICC"; then
MPICC=$SAVE_MPICC
fi
if test -n "$SAVE_MPICXX"; then
MPICXX=$SAVE_MPICXX
fi
if test -n "$SAVE_MPIFC"; then
MPIFC=$SAVE_MPIFC
fi
if test -n "$SAVE_MPILIB"; then
MPILIB=$SAVE_MPILIB
fi
if test -n "$SAVE_MPIINC"; then
MPIINC=$SAVE_MPIINC
fi
if test -n "$SAVE_CFLAGS"; then
CFLAGS="$SAVE_CFLAGS ${CFLAGS}"
fi
if test -n "$SAVE_FFLAGS"; then
FFLAGS=$SAVE_FFLAGS
fi
if test -n "$SAVE_MPIROOT"; then
MPIROOT=$SAVE_MPIROOT
fi
if test -n "$SAVE_HDF5ROOT"; then
HDF5ROOT=$SAVE_HDF5ROOT
fi
if test -n "$SAVE_LDFLAGS"; then
LDFLAGS=$SAVE_LDFLAGS
fi
LIBS="$LIBS -lz -lm"
###############################################################################
############## EXPORTING VARIABLES & CREATING OUTPUT FILES ####################
###############################################################################
# AC_SUBST (variable, [value])
# Create an output variable from a shell variable.
# Make AC_OUTPUT substitute the variable variable into output files (typically one or more `Makefile's).
# This means that AC_OUTPUT will replace instances of `@variable@' in input files with the value that
# the shell variable variable has when AC_OUTPUT is called.
# This value of variable should not contain literal newlines.
# If value is given, in addition assign it to variable.
AC_SUBST(MPIROOT)
# Create an output variable from a shell variable. Make AC_OUTPUT substitute
# the variable variable into output files (typically one or more `Makefile's).
# This means that AC_OUTPUT will replace instances of `@variable@' in input
# files with the value that the shell variable variable has when AC_OUTPUT is
# called. This value of variable should not contain literal newlines. If
# value is given, in addition assign it to variable.
AC_SUBST(HDF5ROOT)
AC_SUBST(MPIINC)
AC_SUBST(MPILIB)
AC_SUBST(MPICC)
AC_SUBST(MPICXX)
AC_SUBST(MPIFC)
AC_SUBST(MTARGET)
AC_SUBST(TTARGET)
AC_SUBST(SZLIB)
AC_SUBST(LUSTREROOT)
AC_SUBST(CFLAGS)
AC_SUBST(FFLAGS)
AC_SUBST(STDCXX)
AC_SUBST(H5P_LIB_LOC)
AC_SUBST(H5P_LIB_NAME)
AC_SUBST(UNDERSCORE_H)
AC_SUBST(BUILD_TOOLS)
AC_SUBST(INCLUDES)
AC_SUBST(LDFLAGS)
AC_SUBST(LIBS)
AC_SUBST(UNDERSCORE_H)
AC_SUBST(LIB_C)
AC_SUBST(LIB_FORTRAN)
AC_SUBST(BINDINGS)
AC_SUBST(BUILD_TESTS)
AC_SUBST(BUILD_TOOLS)
# Make AC_OUTPUT create each `file' by copying an input file (by default `file.in'),
# substituting the output variable values.
AC_CONFIG_FILES([
Makefile
doc/Makefile
src/Makefile
test/Makefile
tools/Makefile
Makefile
src/Makefile
src/C/Makefile
src/h5core/Makefile
src/Fortran/Makefile
test/Makefile
test/H5Fed/Makefile
tools/Makefile
tools/h5hutcc
])
AC_OUTPUT
@@ -621,27 +407,23 @@ AC_OUTPUT
###############################################################################
########################## PRINTING SUMMARY ###################################
###############################################################################
echo
echo
echo "Summary for `(hostname || uname -n) 2>/dev/null | sed 1q`:"
echo
echo "Host OS: $host_os"
echo "Host CPU: $host_cpu"
echo "Host vendor: $host_vendor"
echo "Build libraries: $MTARGET"
echo "Build test programs: $TTARGET"
echo "Build tools: $BUILD_TOOLS"
echo "CC = $CC"
echo "CXX = $CXX"
echo "FC = $FC"
echo "MPICC = $MPICC"
echo "MPICXX = $MPICXX"
echo "MPIFC = $MPIFC"
echo "CFLAGS = $CFLAGS"
echo "FFLAGS = $FFLAGS"
echo "MPILIB = $MPILIB"
echo "MPIINC = $MPIINC"
echo "MPIROOT = $MPIROOT"
echo "HDF5ROOT = $HDF5ROOT"
echo "LDFLAGS = $LDFLAGS"
echo
AC_MSG_RESULT([ ])
AC_MSG_RESULT([Summary:])
AC_MSG_RESULT([ ])
AC_MSG_RESULT([Host OS: $host_os])
AC_MSG_RESULT([Host CPU: $host_cpu])
AC_MSG_RESULT([Host vendor: $host_vendor])
AC_MSG_RESULT([Build libraries: $BUILD_LIBS])
AC_MSG_RESULT([Build test programs: $BUILD_TESTS])
AC_MSG_RESULT([Build tools: $BUILD_TOOLS])
AC_MSG_RESULT([CC = $CC])
AC_MSG_RESULT([CXX = $CXX])
AC_MSG_RESULT([FC = $FC])
AC_MSG_RESULT([CFLAGS = $CFLAGS])
AC_MSG_RESULT([FFLAGS = $FFLAGS])
AC_MSG_RESULT([INCLUDES = $INCLUDES])
AC_MSG_RESULT([LDFLAGS = $LDFLAGS])
AC_MSG_RESULT([LIBS = $LIBS])
AC_MSG_RESULT([HDF5ROOT = $HDF5ROOT])
AC_MSG_RESULT([LUSTREROOT = $LUSTREROOT])
AC_MSG_RESULT([ ])
depcomp
-529
View File
@@ -1,529 +0,0 @@
#! /bin/sh
# depcomp - compile a program generating dependencies as side-effects
scriptversion=2005-02-09.22
# Copyright (C) 1999, 2000, 2003, 2004, 2005 Free Software Foundation, Inc.
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation; either version 2, or (at your option)
# any later version.
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
# You should have received a copy of the GNU General Public License
# along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
# 02111-1307, USA.
# As a special exception to the GNU General Public License, if you
# distribute this file as part of a program that contains a
# configuration script generated by Autoconf, you may include it under
# the same distribution terms that you use for the rest of that program.
# Originally written by Alexandre Oliva <oliva@dcc.unicamp.br>.
case $1 in
'')
echo "$0: No command. Try \`$0 --help' for more information." 1>&2
exit 1;
;;
-h | --h*)
cat <<\EOF
Usage: depcomp [--help] [--version] PROGRAM [ARGS]
Run PROGRAMS ARGS to compile a file, generating dependencies
as side-effects.
Environment variables:
depmode Dependency tracking mode.
source Source file read by `PROGRAMS ARGS'.
object Object file output by `PROGRAMS ARGS'.
DEPDIR directory where to store dependencies.
depfile Dependency file to output.
tmpdepfile Temporary file to use when outputing dependencies.
libtool Whether libtool is used (yes/no).
Report bugs to <bug-automake@gnu.org>.
EOF
exit $?
;;
-v | --v*)
echo "depcomp $scriptversion"
exit $?
;;
esac
if test -z "$depmode" || test -z "$source" || test -z "$object"; then
echo "depcomp: Variables source, object and depmode must be set" 1>&2
exit 1
fi
# Dependencies for sub/bar.o or sub/bar.obj go into sub/.deps/bar.Po.
depfile=${depfile-`echo "$object" |
sed 's|[^\\/]*$|'${DEPDIR-.deps}'/&|;s|\.\([^.]*\)$|.P\1|;s|Pobj$|Po|'`}
tmpdepfile=${tmpdepfile-`echo "$depfile" | sed 's/\.\([^.]*\)$/.T\1/'`}
rm -f "$tmpdepfile"
# Some modes work just like other modes, but use different flags. We
# parameterize here, but still list the modes in the big case below,
# to make depend.m4 easier to write. Note that we *cannot* use a case
# here, because this file can only contain one case statement.
if test "$depmode" = hp; then
# HP compiler uses -M and no extra arg.
gccflag=-M
depmode=gcc
fi
if test "$depmode" = dashXmstdout; then
# This is just like dashmstdout with a different argument.
dashmflag=-xM
depmode=dashmstdout
fi
case "$depmode" in
gcc3)
## gcc 3 implements dependency tracking that does exactly what
## we want. Yay! Note: for some reason libtool 1.4 doesn't like
## it if -MD -MP comes after the -MF stuff. Hmm.
"$@" -MT "$object" -MD -MP -MF "$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
mv "$tmpdepfile" "$depfile"
;;
gcc)
## There are various ways to get dependency output from gcc. Here's
## why we pick this rather obscure method:
## - Don't want to use -MD because we'd like the dependencies to end
## up in a subdir. Having to rename by hand is ugly.
## (We might end up doing this anyway to support other compilers.)
## - The DEPENDENCIES_OUTPUT environment variable makes gcc act like
## -MM, not -M (despite what the docs say).
## - Using -M directly means running the compiler twice (even worse
## than renaming).
if test -z "$gccflag"; then
gccflag=-MD,
fi
"$@" -Wp,"$gccflag$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
echo "$object : \\" > "$depfile"
alpha=ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz
## The second -e expression handles DOS-style file names with drive letters.
sed -e 's/^[^:]*: / /' \
-e 's/^['$alpha']:\/[^:]*: / /' < "$tmpdepfile" >> "$depfile"
## This next piece of magic avoids the `deleted header file' problem.
## The problem is that when a header file which appears in a .P file
## is deleted, the dependency causes make to die (because there is
## typically no way to rebuild the header). We avoid this by adding
## dummy dependencies for each header file. Too bad gcc doesn't do
## this for us directly.
tr ' ' '
' < "$tmpdepfile" |
## Some versions of gcc put a space before the `:'. On the theory
## that the space means something, we add a space to the output as
## well.
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
hp)
# This case exists only to let depend.m4 do its work. It works by
# looking at the text of this script. This case will never be run,
# since it is checked for above.
exit 1
;;
sgi)
if test "$libtool" = yes; then
"$@" "-Wp,-MDupdate,$tmpdepfile"
else
"$@" -MDupdate "$tmpdepfile"
fi
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
if test -f "$tmpdepfile"; then # yes, the sourcefile depend on other files
echo "$object : \\" > "$depfile"
# Clip off the initial element (the dependent). Don't try to be
# clever and replace this with sed code, as IRIX sed won't handle
# lines with more than a fixed number of characters (4096 in
# IRIX 6.2 sed, 8192 in IRIX 6.5). We also remove comment lines;
# the IRIX cc adds comments like `#:fec' to the end of the
# dependency line.
tr ' ' '
' < "$tmpdepfile" \
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' | \
tr '
' ' ' >> $depfile
echo >> $depfile
# The second pass generates a dummy entry for each header file.
tr ' ' '
' < "$tmpdepfile" \
| sed -e 's/^.*\.o://' -e 's/#.*$//' -e '/^$/ d' -e 's/$/:/' \
>> $depfile
else
# The sourcefile does not contain any dependencies, so just
# store a dummy comment line, to avoid errors with the Makefile
# "include basename.Plo" scheme.
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
aix)
# The C for AIX Compiler uses -M and outputs the dependencies
# in a .u file. In older versions, this file always lives in the
# current directory. Also, the AIX compiler puts `$object:' at the
# start of each line; $object doesn't have directory information.
# Version 6 uses the directory in both cases.
stripped=`echo "$object" | sed 's/\(.*\)\..*$/\1/'`
tmpdepfile="$stripped.u"
if test "$libtool" = yes; then
"$@" -Wc,-M
else
"$@" -M
fi
stat=$?
if test -f "$tmpdepfile"; then :
else
stripped=`echo "$stripped" | sed 's,^.*/,,'`
tmpdepfile="$stripped.u"
fi
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
if test -f "$tmpdepfile"; then
outname="$stripped.o"
# Each line is of the form `foo.o: dependent.h'.
# Do two passes, one to just change these to
# `$object: dependent.h' and one to simply `dependent.h:'.
sed -e "s,^$outname:,$object :," < "$tmpdepfile" > "$depfile"
sed -e "s,^$outname: \(.*\)$,\1:," < "$tmpdepfile" >> "$depfile"
else
# The sourcefile does not contain any dependencies, so just
# store a dummy comment line, to avoid errors with the Makefile
# "include basename.Plo" scheme.
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
icc)
# Intel's C compiler understands `-MD -MF file'. However on
# icc -MD -MF foo.d -c -o sub/foo.o sub/foo.c
# ICC 7.0 will fill foo.d with something like
# foo.o: sub/foo.c
# foo.o: sub/foo.h
# which is wrong. We want:
# sub/foo.o: sub/foo.c
# sub/foo.o: sub/foo.h
# sub/foo.c:
# sub/foo.h:
# ICC 7.1 will output
# foo.o: sub/foo.c sub/foo.h
# and will wrap long lines using \ :
# foo.o: sub/foo.c ... \
# sub/foo.h ... \
# ...
"$@" -MD -MF "$tmpdepfile"
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile"
exit $stat
fi
rm -f "$depfile"
# Each line is of the form `foo.o: dependent.h',
# or `foo.o: dep1.h dep2.h \', or ` dep3.h dep4.h \'.
# Do two passes, one to just change these to
# `$object: dependent.h' and one to simply `dependent.h:'.
sed "s,^[^:]*:,$object :," < "$tmpdepfile" > "$depfile"
# Some versions of the HPUX 10.20 sed can't process this invocation
# correctly. Breaking it into two sed invocations is a workaround.
sed 's,^[^:]*: \(.*\)$,\1,;s/^\\$//;/^$/d;/:$/d' < "$tmpdepfile" |
sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
tru64)
# The Tru64 compiler uses -MD to generate dependencies as a side
# effect. `cc -MD -o foo.o ...' puts the dependencies into `foo.o.d'.
# At least on Alpha/Redhat 6.1, Compaq CCC V6.2-504 seems to put
# dependencies in `foo.d' instead, so we check for that too.
# Subdirectories are respected.
dir=`echo "$object" | sed -e 's|/[^/]*$|/|'`
test "x$dir" = "x$object" && dir=
base=`echo "$object" | sed -e 's|^.*/||' -e 's/\.o$//' -e 's/\.lo$//'`
if test "$libtool" = yes; then
# With Tru64 cc, shared objects can also be used to make a
# static library. This mecanism is used in libtool 1.4 series to
# handle both shared and static libraries in a single compilation.
# With libtool 1.4, dependencies were output in $dir.libs/$base.lo.d.
#
# With libtool 1.5 this exception was removed, and libtool now
# generates 2 separate objects for the 2 libraries. These two
# compilations output dependencies in in $dir.libs/$base.o.d and
# in $dir$base.o.d. We have to check for both files, because
# one of the two compilations can be disabled. We should prefer
# $dir$base.o.d over $dir.libs/$base.o.d because the latter is
# automatically cleaned when .libs/ is deleted, while ignoring
# the former would cause a distcleancheck panic.
tmpdepfile1=$dir.libs/$base.lo.d # libtool 1.4
tmpdepfile2=$dir$base.o.d # libtool 1.5
tmpdepfile3=$dir.libs/$base.o.d # libtool 1.5
tmpdepfile4=$dir.libs/$base.d # Compaq CCC V6.2-504
"$@" -Wc,-MD
else
tmpdepfile1=$dir$base.o.d
tmpdepfile2=$dir$base.d
tmpdepfile3=$dir$base.d
tmpdepfile4=$dir$base.d
"$@" -MD
fi
stat=$?
if test $stat -eq 0; then :
else
rm -f "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
exit $stat
fi
for tmpdepfile in "$tmpdepfile1" "$tmpdepfile2" "$tmpdepfile3" "$tmpdepfile4"
do
test -f "$tmpdepfile" && break
done
if test -f "$tmpdepfile"; then
sed -e "s,^.*\.[a-z]*:,$object:," < "$tmpdepfile" > "$depfile"
# That's a tab and a space in the [].
sed -e 's,^.*\.[a-z]*:[ ]*,,' -e 's,$,:,' < "$tmpdepfile" >> "$depfile"
else
echo "#dummy" > "$depfile"
fi
rm -f "$tmpdepfile"
;;
#nosideeffect)
# This comment above is used by automake to tell side-effect
# dependency tracking mechanisms from slower ones.
dashmstdout)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout, regardless of -o.
"$@" || exit $?
# Remove the call to Libtool.
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# Remove `-o $object'.
IFS=" "
for arg
do
case $arg in
-o)
shift
;;
$object)
shift
;;
*)
set fnord "$@" "$arg"
shift # fnord
shift # $arg
;;
esac
done
test -z "$dashmflag" && dashmflag=-M
# Require at least two characters before searching for `:'
# in the target name. This is to cope with DOS-style filenames:
# a dependency such as `c:/foo/bar' could be seen as target `c' otherwise.
"$@" $dashmflag |
sed 's:^[ ]*[^: ][^:][^:]*\:[ ]*:'"$object"'\: :' > "$tmpdepfile"
rm -f "$depfile"
cat < "$tmpdepfile" > "$depfile"
tr ' ' '
' < "$tmpdepfile" | \
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
dashXmstdout)
# This case only exists to satisfy depend.m4. It is never actually
# run, as this mode is specially recognized in the preamble.
exit 1
;;
makedepend)
"$@" || exit $?
# Remove any Libtool call
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# X makedepend
shift
cleared=no
for arg in "$@"; do
case $cleared in
no)
set ""; shift
cleared=yes ;;
esac
case "$arg" in
-D*|-I*)
set fnord "$@" "$arg"; shift ;;
# Strip any option that makedepend may not understand. Remove
# the object too, otherwise makedepend will parse it as a source file.
-*|$object)
;;
*)
set fnord "$@" "$arg"; shift ;;
esac
done
obj_suffix="`echo $object | sed 's/^.*\././'`"
touch "$tmpdepfile"
${MAKEDEPEND-makedepend} -o"$obj_suffix" -f"$tmpdepfile" "$@"
rm -f "$depfile"
cat < "$tmpdepfile" > "$depfile"
sed '1,2d' "$tmpdepfile" | tr ' ' '
' | \
## Some versions of the HPUX 10.20 sed can't process this invocation
## correctly. Breaking it into two sed invocations is a workaround.
sed -e 's/^\\$//' -e '/^$/d' -e '/:$/d' | sed -e 's/$/ :/' >> "$depfile"
rm -f "$tmpdepfile" "$tmpdepfile".bak
;;
cpp)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout.
"$@" || exit $?
# Remove the call to Libtool.
if test "$libtool" = yes; then
while test $1 != '--mode=compile'; do
shift
done
shift
fi
# Remove `-o $object'.
IFS=" "
for arg
do
case $arg in
-o)
shift
;;
$object)
shift
;;
*)
set fnord "$@" "$arg"
shift # fnord
shift # $arg
;;
esac
done
"$@" -E |
sed -n '/^# [0-9][0-9]* "\([^"]*\)".*/ s:: \1 \\:p' |
sed '$ s: \\$::' > "$tmpdepfile"
rm -f "$depfile"
echo "$object : \\" > "$depfile"
cat < "$tmpdepfile" >> "$depfile"
sed < "$tmpdepfile" '/^$/d;s/^ //;s/ \\$//;s/$/ :/' >> "$depfile"
rm -f "$tmpdepfile"
;;
msvisualcpp)
# Important note: in order to support this mode, a compiler *must*
# always write the preprocessed file to stdout, regardless of -o,
# because we must use -o when running libtool.
"$@" || exit $?
IFS=" "
for arg
do
case "$arg" in
"-Gm"|"/Gm"|"-Gi"|"/Gi"|"-ZI"|"/ZI")
set fnord "$@"
shift
shift
;;
*)
set fnord "$@" "$arg"
shift
shift
;;
esac
done
"$@" -E |
sed -n '/^#line [0-9][0-9]* "\([^"]*\)"/ s::echo "`cygpath -u \\"\1\\"`":p' | sort | uniq > "$tmpdepfile"
rm -f "$depfile"
echo "$object : \\" > "$depfile"
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s:: \1 \\:p' >> "$depfile"
echo " " >> "$depfile"
. "$tmpdepfile" | sed 's% %\\ %g' | sed -n '/^\(.*\)$/ s::\1\::p' >> "$depfile"
rm -f "$tmpdepfile"
;;
none)
exec "$@"
;;
*)
echo "Unknown depmode $depmode" 1>&2
exit 1
;;
esac
exit 0
# Local Variables:
# mode: shell-script
# sh-indentation: 2
# eval: (add-hook 'write-file-hooks 'time-stamp)
# time-stamp-start: "scriptversion="
# time-stamp-format: "%:y-%02m-%02d.%02H"
# time-stamp-end: "$"
# End:
doc/Doxyfile
+30 -36
View File
@@ -3,8 +3,8 @@
#---------------------------------------------------------------------------
# Project related configuration options
#---------------------------------------------------------------------------
PROJECT_NAME = H5Part
PROJECT_NUMBER = 1.6.0
PROJECT_NAME = H5hut
PROJECT_NUMBER = 1.9.9
OUTPUT_DIRECTORY = ./ReferencePages
CREATE_SUBDIRS = NO
OUTPUT_LANGUAGE = English
@@ -35,7 +35,7 @@ INHERIT_DOCS = YES
SEPARATE_MEMBER_PAGES = NO
TAB_SIZE = 8
ALIASES =
OPTIMIZE_OUTPUT_FOR_C = NO
OPTIMIZE_OUTPUT_FOR_C = YES
OPTIMIZE_OUTPUT_JAVA = NO
BUILTIN_STL_SUPPORT = NO
DISTRIBUTE_GROUP_DOC = NO
@@ -57,9 +57,9 @@ CASE_SENSE_NAMES = YES
HIDE_SCOPE_NAMES = NO
SHOW_INCLUDE_FILES = NO
INLINE_INFO = YES
SORT_MEMBER_DOCS = YES
SORT_BRIEF_DOCS = YES
SORT_BY_SCOPE_NAME = YES
SORT_MEMBER_DOCS = NO
SORT_BRIEF_DOCS = NO
SORT_BY_SCOPE_NAME = NO
GENERATE_TODOLIST = YES
GENERATE_TESTLIST = YES
GENERATE_BUGLIST = YES
@@ -67,7 +67,7 @@ GENERATE_DEPRECATEDLIST= YES
ENABLED_SECTIONS =
MAX_INITIALIZER_LINES = 30
SHOW_USED_FILES = NO
SHOW_DIRECTORIES = YES
SHOW_DIRECTORIES = NO
FILE_VERSION_FILTER =
#---------------------------------------------------------------------------
# configuration options related to warning and progress messages
@@ -82,28 +82,22 @@ WARN_LOGFILE =
#---------------------------------------------------------------------------
# configuration options related to the input files
#---------------------------------------------------------------------------
INPUT += ../src/H5Part.c
INPUT += ../src/H5PartAttrib.c
INPUT += ../src/H5Block.c
INPUT += ../src/H5BlockReadWrite.c
INPUT += ../src/H5MultiBlock.c
INPUT += ../src/H5MultiBlockReadWrite.c
INPUT += ../src/H5Part.f90
INPUT += ../src/H5PartAttrib.f90
INPUT += ../src/H5Block.f90
INPUT += ../src/H5BlockReadWrite.f90
FILE_PATTERNS =
RECURSIVE = YES
EXCLUDE =
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS =
EXAMPLE_PATH =
EXAMPLE_PATTERNS = *
EXAMPLE_RECURSIVE = NO
IMAGE_PATH =
INPUT_FILTER =
FILTER_PATTERNS =
FILTER_SOURCE_FILES = NO
INPUT += H5.dox
INPUT += ../src/h5core/
INPUT += ../src/C/
INPUT += ../src/Fortran/
FILE_PATTERNS =
RECURSIVE = YES
EXCLUDE =
EXCLUDE_SYMLINKS = NO
EXCLUDE_PATTERNS =
EXAMPLE_PATH =
EXAMPLE_PATTERNS = *
EXAMPLE_RECURSIVE = NO
IMAGE_PATH =
INPUT_FILTER =
FILTER_PATTERNS =
FILTER_SOURCE_FILES = NO
#---------------------------------------------------------------------------
# configuration options related to source browsing
#---------------------------------------------------------------------------
@@ -126,8 +120,8 @@ IGNORE_PREFIX =
GENERATE_HTML = YES
HTML_OUTPUT = .
HTML_FILE_EXTENSION = .html
HTML_HEADER =
HTML_FOOTER = doxyfooter
HTML_HEADER =
HTML_FOOTER =
HTML_STYLESHEET =
HTML_ALIGN_MEMBERS = YES
GENERATE_HTMLHELP = NO
@@ -205,7 +199,7 @@ SKIP_FUNCTION_MACROS = YES
#---------------------------------------------------------------------------
# Configuration::additions related to external references
#---------------------------------------------------------------------------
TAGFILES =
TAGFILES =
GENERATE_TAGFILE =
ALLEXTERNALS = NO
EXTERNAL_GROUPS = YES
@@ -214,7 +208,7 @@ PERL_PATH = /usr/bin/perl
# Configuration options related to the dot tool
#---------------------------------------------------------------------------
CLASS_DIAGRAMS = NO
HIDE_UNDOC_RELATIONS = NO
HIDE_UNDOC_RELATIONS = YES
HAVE_DOT = NO
CLASS_GRAPH = NO
COLLABORATION_GRAPH = NO
@@ -224,10 +218,10 @@ TEMPLATE_RELATIONS = NO
INCLUDE_GRAPH = NO
INCLUDED_BY_GRAPH = NO
CALL_GRAPH = NO
GRAPHICAL_HIERARCHY = YES
DIRECTORY_GRAPH = YES
GRAPHICAL_HIERARCHY = NO
DIRECTORY_GRAPH = NO
DOT_IMAGE_FORMAT = png
DOT_PATH =
DOT_PATH =
DOTFILE_DIRS =
MAX_DOT_GRAPH_WIDTH = 1024
MAX_DOT_GRAPH_HEIGHT = 1024
doc/Examples/meshexample.dxf
+47962
View File
File diff suppressed because it is too large Load Diff
doc/Examples/meshexample.txt
+77
View File
@@ -0,0 +1,77 @@
NumLevels: 2
NumVerticesOnLevel: 11 20 29
Vertices:
1 0.0 0.0
2 60.0 -70.0
3 90.0 -10.0
4 140.0 -70.0
5 180.0 -10.0
6 240.0 -60.0
7 220.0 60.0
8 140.0 90.0
9 200.0 120.0
10 130.0 150.0
11 50.0 80.0
12 115.0 40.0
13 95.0 85.0
14 70.0 35.0
15 160.0 -40.0
16 135.0 -10.0
17 115.0 -40.0
18 200.0 25.0
19 180.0 75.0
20 160.0 40.0
21 125.0 15.0
22 112.5 -10.0
23 102.5 15.0
24 147.5 15.0
25 137.5 40.0
26 150.0 65.0
27 127.5 65.0
28 117.5 87.5
29 105.0 62.5
NumElemsOnLevel: 12 24 36
NumElems: 12 28 44
Elements:
ID PID CID VertexIDs Adj Translation Tbl (dim num lvls - 1)
1 -1 -1 1 2 3 2 11 -1 1
2 -1 -1 2 3 4 3 -1 1 2
3 -1 12 3 4 5 4 12 2 -1
4 -1 -1 4 5 6 5 -1 3 3
5 -1 -1 5 7 6 -1 4 6 4
6 -1 17 8 5 7 5 7 12 -1
7 -1 -1 8 9 7 -1 6 8 5
8 -1 -1 10 8 9 7 -1 9 6
9 -1 -1 11 10 8 8 10 -1 7
10 -1 25 11 3 8 12 9 11 -1
11 -1 -1 1 11 3 10 1 -1 8
12 -1 21 3 8 5 6 3 10 -1
13 3 -1 3 14 13 16 21 2 9
14 3 -1 14 4 12 4 16 2 10
15 3 -1 13 12 5 4 23 16 11
16 3 -1 14 13 12 15 14 13 12
17 6 -1 8 17 16 20 5 22 13
18 6 -1 17 5 15 5 20 23 14
19 6 -1 16 15 7 5 7 20 15
20 6 -1 17 16 15 19 18 17 16
21 12 -1 3 18 13 24 13 26 17
22 12 -1 18 8 17 17 24 27 18
23 12 -1 13 17 5 18 15 24 19
24 12 -1 18 13 17 23 22 21 20
25 10 -1 11 20 19 28 9 11 21
26 10 -1 20 3 18 21 28 11 22
27 10 -1 19 18 8 22 9 28 23
28 10 -1 20 3 18 27 26 25 24
3,0 3,1 4,2 2,3 16,4
1 2 -1 3 4
1 2 3
1 3 6
2 11 1 13 14
doc/Examples/simple_tet.vtk
+107
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@@ -0,0 +1,107 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 18 90
4 0 3 2 1
4 0 4 3 1
4 0 5 6 7
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
4 0 11 12 13
4 11 5 14 15
4 12 14 6 16
4 13 15 16 7
4 11 12 13 15
4 11 12 14 15
4 12 13 15 16
4 12 14 15 16
CELL_TYPES 18
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 18
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
doc/Examples/simple_tet_level0.vtk
+59
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@@ -0,0 +1,59 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 2 10
4 0 3 2 1
4 0 4 3 1
CELL_TYPES 2
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 2
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
doc/Examples/simple_tet_level1.vtk
+80
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@@ -0,0 +1,80 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 9 45
4 0 4 3 1
4 0 5 6 7
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
CELL_TYPES 9
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 9
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
doc/Examples/simple_tet_level2.vtk
+101
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@@ -0,0 +1,101 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 17 DOUBLE
-1 0 0
1 0 0
0 1 0
0 0 1
0 -1 0
-0.5 0 0.5
-0.5 0.5 0
0 0 0
0 0.5 0.5
0.5 0 0.5
0.5 0.5 0
-0.75 0 0.25
-0.75 0.25 0
-0.5 0 0
-0.5 0.25 0.25
-0.25 0 0.25
-0.25 0.25 0
CELLS 16 80
4 0 4 3 1
4 5 3 8 9
4 6 8 2 10
4 7 9 10 1
4 5 6 7 9
4 5 6 8 9
4 6 7 9 10
4 6 8 9 10
4 0 11 12 13
4 11 5 14 15
4 12 14 6 16
4 13 15 16 7
4 11 12 13 15
4 11 12 14 15
4 12 13 15 16
4 12 14 15 16
CELL_TYPES 16
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
10
POINT_DATA 17
SCALARS vertex_id int 1
LOOKUP_TABLE default
0
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
CELL_DATA 16
SCALARS cell_attribute_data int 1
LOOKUP_TABLE default
1
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
doc/Examples/trimesh_dgraph_level0.metis
+13
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@@ -0,0 +1,13 @@
12 14
2 11
1 3
2 4 12
3 5
4 6
5 7 12
6 8
7 9
8 10
9 11 12
1 10
3 6 10
doc/Examples/trimesh_dgraph_level0.metis.part.2
+12
View File
@@ -0,0 +1,12 @@
0
1
1
1
1
1
0
0
0
0
0
1
doc/Examples/trimesh_dgraph_level0.metis.part.3
+12
View File
@@ -0,0 +1,12 @@
1
1
2
2
2
0
0
0
0
1
1
2
doc/Examples/trimesh_dnode_level1.metis
+49
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@@ -0,0 +1,49 @@
24 35
%1
2 8
%2
1 9 10
%3
4 10 11
%4
3 14 15
%5
6 13 15
%6
5 7
%7
6 21 23
%8
1 21 22
%9
2 12 17
%10
2 3 12
%11
3 12 19
%12
9 10 11
%13
5 16 18
%14
4 16 19
%15
4 5 16
%16
13 14 15
%17
9 20 22
%18
13 20 23
%19
11 14 20
%20
17 18 19
%21
7 8 24
%22
8 17 24
%23
7 18 24
%24
21 22 23
doc/Examples/trimesh_dnode_level1.metis.part.2
+24
View File
@@ -0,0 +1,24 @@
1
1
0
0
0
0
1
1
1
1
0
1
0
0
0
0
1
0
0
0
1
1
1
1
doc/Examples/trimesh_level0.metis
+13
View File
@@ -0,0 +1,13 @@
12 1
1 2 3
2 3 4
3 4 6
4 5 6
5 6 7
6 7 8
7 8 11
8 10 11
8 9 10
3 8 9
1 3 9
3 6 8
doc/Examples/trimesh_level0.metis.epart.2
+12
View File
@@ -0,0 +1,12 @@
1
1
1
1
0
0
0
0
0
0
1
1
doc/Examples/trimesh_level0.metis.ngraph
+12
View File
@@ -0,0 +1,12 @@
11 22
2 3 9
1 3 4
1 2 4 6 8 9
2 3 6 5
4 6 7
3 4 5 7 8
5 6 8 11
6 7 11 10 9 3
8 10 3 1
8 11 9
7 8 10
doc/Examples/trimesh_level0.metis.npart.2
+11
View File
@@ -0,0 +1,11 @@
1
1
1
1
1
0
0
0
0
0
0
doc/Examples/trimesh_level1.metis
+41
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@@ -0,0 +1,41 @@
20 43
%1
2 3 11
%2
1 3 4
%3
1 2 14 13 18 20
%4
2 14 12 6
%5
12 6 15 17 13
%6
4 5 7
%7
6 15 16 9
%8
9 10 19 18 17 16
%9
7 8 10
%10
8 9 11
%11
1 20 19 10
%12
4 14 13 5
%13
3 14 12 5 17 18
%14
3 13 12 4
%15
5 17 17 7
%16
7 8 17 15
%17
5 15 16 8 18 13
%18
3 13 17 8 19 20
%19
8 11 20 18
%20
3 18 19 11
doc/Examples/trimesh_level1.metis.part.2
+20
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@@ -0,0 +1,20 @@
1
1
1
0
0
0
0
1
1
1
1
0
0
0
0
0
0
1
1
1
doc/H5.dox
+139
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@@ -0,0 +1,139 @@
/*!
\mainpage H5hut: A High-Performance I/O Library for Particle-based Simulations
Particle-based simulations running on large high-performance computing systems
over many time steps can generate an enormous amount of particle- and
field-based data for post-processing and analysis. Achieving high-performance
I/O for this data, effectively managing it on disk, and interfacing it with
analysis and visualization tools can be challenging, especially for domain
scientists who do not have I/O and data management expertise. We present the
H5hut library, an implementation of several data models for particle-based
simulations that encapsulates the complexity of HDF5 and is simple to use, yet
does not compromise performance.
Developers:
<UL>
<LI> Andreas Adelmann (PSI) </LI>
<LI> Achim Gsell (PSI) </LI>
<LI> Benedikt Oswald (PSI) </LI>
<LI> Mark Howison (NERSC/LBNL) </LI>
<LI> Prabhat (NERSC/LBNL) </LI>
<LI> Wes Bethel (NERSC/LBNL) </LI>
</UL>
Previous developers:
<UL>
<LI> John Shalf (NERSC/LBNL)</LI>
<LI> Cristina Siegerist (NERSC/LBNL)</LI>
</UL>
For more information, please contact the <a href="mailto:h5part@lists.psi.ch">h5part</a> mailing list.
*/
/*!
\defgroup h5hut_c_api H5hut C API
*/
/*!
\ingroup h5hut_c_api
\defgroup h5hut_file File Handling
*/
/*!
\ingroup h5hut_c_api
\defgroup h5hut_error Error Handling
*/
/*!
\ingroup h5hut_c_api
\defgroup h5hut_model Setting up the Data Model
*/
/*!
\ingroup h5hut_c_api
\defgroup h5hut_attrib Reading and Writing Attributes
*/
/*!
\defgroup h5part_c_api H5Part C API
*/
/*!
\ingroup h5part_c_api
\defgroup h5part_model Setting up the Data Model
*/
/*!
\ingroup h5part_c_api
\defgroup h5part_data Reading and Writing Datasets
*/
/*!
\defgroup h5block_c_api H5Block C API
*/
*/!
\ingroup h5block_c_api
\defgroup h5block_model Setting up the Data Model
*/
\ingroup h5block_c_api
\defgroup h5block_data Reading and Writing Datasets
*/
\ingroup h5block_c_api
\defgroup h5block_attrib Reading and Writing Attributes
*/
/*!
\defgroup h5fed_c_api H5Fed C API
*/
/*!
\defgroup h5hut_f90_api H5hut F90 API
*/
/*!
\ingroup h5hut_f90_api
\defgroup h5hut_file_f File Handling
*/
/*!
\ingroup h5hut_f90_api
\defgroup h5hut_model_f Setting up the Data Model
*/
/*!
\ingroup h5hut_f90_api
\defgroup h5hut_attrib_f Reading and Writing Attributes
!<
/*!
\defgroup h5part_f90_api H5Part F90 API
*/
/*!
\ingroup h5part_f90_api
\defgroup h5part_model_f Setting up the Data Model
*/
/*!
\ingroup h5part_f90_api
\defgroup h5part_data_f Reading and Writing Datasets
*/
/*!
\defgroup h5block_f90_api H5Block F90 API
*/
/*!
\ingroup h5block_f90_api
\defgroup h5block_model_f Setting up the Data Model
*/
/*!
\ingroup h5block_f90_api
\defgroup h5block_data_f Reading and Writing Datasets
*/
/*!
\ingroup h5block_f90_api
\defgroup h5block_attrib_f Reading and Writing Attributes
*/
doc/Makefile.am
+12 -1
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@@ -1,2 +1,13 @@
EXTRA_DIST = \
Doxyfile doxyfooter
Doxyfile \
H5.dox
all:
doc:
doxydoc:
doxygen
clean:
${RM} -rf ReferencePages TWiki
doc/doxyheader
+6
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@@ -0,0 +1,6 @@
<HTML>
<HEAD>
<TITLE>H5/H5Part/H5Block/H5Fed API</TITLE>
<LINK HREF="doxygen.css" REL="stylesheet" TYPE="text/css">
</HEAD>
<BODY BGCOLOR="#FFFFFF">
doc/html2twiki
Executable
+36
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@@ -0,0 +1,36 @@
#!/bin/bash
shopt -s nullglob
function html2twiki() {
declare -rx infile=$1
declare -rx outdir=$2
declare -rx fname=$( sed -n 's/.* member="\([a-zA-Z0-9_.]*\)::\([_a-zA-Z0-9]*\)" .*/\2/p' "${infile}" )
declare -rx outfile="${outdir}/${fname}.txt"
grep -q " member=" "${infile}" || return 0
sed '/Generated by/,/anchor/d' "${infile}" > "${outfile}"
}
mkdir -p TWiki/h5_core
mkdir -p TWiki/H5
mkdir -p TWiki/H5Part
mkdir -p TWiki/H5Block
mkdir -p TWiki/H5Fed
for f in ReferencePages/group__h5__core_*.html; do
html2twiki $f TWiki/h5_core
done
for f in ReferencePages/group__h5__c__api_*.html; do
html2twiki $f TWiki/H5
done
for f in ReferencePages/group__h5part__c__api_*.html; do
html2twiki $f TWiki/H5Part
done
for f in ReferencePages/group__h5block__c__api_*.html; do
html2twiki $f TWiki/H5Block
done
for f in ReferencePages/group__h5fed__c__api_*.html; do
html2twiki $f TWiki/H5Fed
done
doc/meshexample.dxf
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doc/tetrahedron_refinements/1-edge/edge_01_refined/01.txt
+10
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TET no. 0:
0.5, 0.5, 0.0
0.0, 0.0, 1.0
0.0, 0.0, 0.0
0.0, 1.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_01_refined/01.vtk
+25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.5 0.0
0.0 0.0 1.0
0.0 0.0 0.0
0.0 1.0 0.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_01_refined/01_smal.png
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doc/tetrahedron_refinements/1-edge/edge_12_refined/12.txt
+10
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TET no. 0:
0.0, 0.5, 0.5
0.0, 0.0, 0.0
1.0, 0.0, 0.0
0.0, 1.0, 0.0
TET no. 1:
0.0, 0.5, 0.5
1.0, 0.0, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/1-edge/edge_12_refined/12.vtk
+25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.5 0.5
0.0 0.0 0.0
1.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_12_refined/12_small.png
BIN
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doc/tetrahedron_refinements/1-edge/edge_20_refined/20.txt
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TET no. 0:
0.5, 0.0, 0.5
0.0, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.0, 0.5
0.0, 1.0, 0.0
0.0, 0.0, 0.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_20_refined/20.vtk
+25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.0 0.5
0.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_20_refined/20_small.png
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doc/tetrahedron_refinements/1-edge/edge_23_refined/23.txt
+10
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TET no. 0:
0.0, 0.0, 0.5
1.0, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.0, 0.5
0.0, 1.0, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/1-edge/edge_23_refined/23.vtk
+25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.0 0.5
1.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 0.0
0.0 0.0 1.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
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doc/tetrahedron_refinements/1-edge/edge_30_refined/30.txt
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TET no. 0:
0.5, 0.0, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 1.0
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.0, 0.0
0.0, 0.0, 1.0
0.0, 1.0, 0.0
1.0, 0.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_30_refined/30.vtk
+25
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@@ -0,0 +1,25 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.5 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
0.0 0.0 0.0
1.0 0.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_30_refined/30_small.png
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doc/tetrahedron_refinements/1-edge/edge_31_refined/31.txt
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TET no. 0:
0.0, 0.5, 0.0
0.0, 0.0, 1.0
1.0, 0.0, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.5, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
0.0, 1.0, 0.0
doc/tetrahedron_refinements/1-edge/edge_31_refined/31.vtk
+25
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 5 DOUBLE
0.0 0.5 0.0
0.0 0.0 1.0
1.0 0.0 0.0
0.0 0.0 0.0
0.0 1.0 0.0
CELLS 2 10
4 0 1 2 3
4 0 2 1 4
CELL_TYPES 2
10
10
CELL_DATA 2
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
doc/tetrahedron_refinements/1-edge/edge_31_refined/31_small.png
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doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.txt
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TET no. 0:
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.5, 0.5
0.0, 0.0, 0.0
TET no. 1:
0.0, 0.5, 0.5
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.0
TET no. 2:
1.0, 0.0, 0.0
0.0, 0.5, 0.5
0.0, 0.0, 1.0
0.0, 0.0, 0.0
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12.vtk
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.5 0.0
0.0 1.0 0.0
0.0 0.5 0.5
0.0 0.0 0.0
1.0 0.0 0.0
0.0 0.0 1.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-12_refined/01-12_smal.png
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doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.txt
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TET no. 0:
0.5, 0.0, 0.5
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 1.0
0.5, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 2:
0.0, 0.0, 1.0
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.0
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20.vtk
+29
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.0 0.5
1.0 0.0 0.0
0.5 0.5 0.0
0.0 0.0 0.0
0.0 0.0 1.0
0.0 1.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-20_refined/01-20_small.png
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doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.txt
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TET no. 0:
1.0, 0.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 1.0, 0.0
0.0, 0.0, 0.5
0.0, 0.0, 0.0
TET no. 2:
0.5, 0.5, 0.0
0.0, 0.0, 0.5
0.0, 1.0, 0.0
0.0, 0.0, 1.0
TET no. 3:
1.0, 0.0, 0.0
0.0, 0.0, 0.5
0.5, 0.5, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23.vtk
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
1.0 0.0 0.0
0.5 0.5 0.0
0.0 0.0 0.5
0.0 0.0 0.0
0.0 1.0 0.0
0.0 0.0 1.0
CELLS 4 20
4 0 1 2 3
4 1 4 2 3
4 1 2 4 5
4 0 2 1 5
CELL_TYPES 4
10
10
10
10
CELL_DATA 4
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
3
doc/tetrahedron_refinements/2-edges/edge_01-23_refined/01-23_smal.png
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doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.txt
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TET no. 0:
0.5, 0.5, 0.0
1.0, 0.0, 0.0
0.5, 0.0, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.0, 0.0
0.0, 1.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 1.0
TET no. 2:
0.0, 1.0, 0.0
0.5, 0.0, 0.0
0.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30.vtk
+29
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# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.5 0.5 0.0
1.0 0.0 0.0
0.5 0.0 0.0
0.0 0.0 1.0
0.0 1.0 0.0
0.0 0.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-30_refined/01-30_small.png
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doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.txt
+15
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@@ -0,0 +1,15 @@
TET no. 0:
0.0, 0.5, 0.0
0.0, 1.0, 0.0
0.5, 0.5, 0.0
0.0, 0.0, 1.0
TET no. 1:
0.5, 0.5, 0.0
0.0, 0.0, 0.0
0.0, 0.5, 0.0
0.0, 0.0, 1.0
TET no. 2:
0.0, 0.0, 0.0
0.5, 0.5, 0.0
1.0, 0.0, 0.0
0.0, 0.0, 1.0
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31.vtk
+29
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@@ -0,0 +1,29 @@
# vtk DataFile Version 2.0
VTK LEGACY FILE FORMAT ASCII - tetrahedral sample file for H5FED test
ASCII
DATASET UNSTRUCTURED_GRID
POINTS 6 DOUBLE
0.0 0.5 0.0
0.0 1.0 0.0
0.5 0.5 0.0
0.0 0.0 1.0
0.0 0.0 0.0
1.0 0.0 0.0
CELLS 3 15
4 0 1 2 3
4 2 4 0 3
4 4 2 5 3
CELL_TYPES 3
10
10
10
CELL_DATA 3
SCALARS cell_attribute_data float 1
LOOKUP_TABLE default
0
1
2
doc/tetrahedron_refinements/2-edges/edge_01-31_refined/01-31_small.png
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