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This commit is contained in:
gsell
2010-04-15 16:05:16 +00:00
parent 462fb26ba4
commit d2b696959c
5 changed files with 0 additions and 371 deletions
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.gitattributes
-4
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@@ -424,10 +424,6 @@ src/h5_core/h5b_errorhandling_private.h -text
src/h5_core/h5b_types_private.h -text
src/h5_core/h5t_adjacencies.c -text
src/h5_core/h5t_adjacencies.h -text
src/h5_core/h5t_adjacencies_private.h -text
src/h5_core/h5t_boundaries.c -text
src/h5_core/h5t_boundaries.h -text
src/h5_core/h5t_boundaries_private.h -text
src/h5_core/h5t_consts.c -text
src/h5_core/h5t_consts_private.h -text
src/h5_core/h5t_core.h -text
src/h5_core/h5t_adjacencies_private.h
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@@ -1,6 +0,0 @@
#ifndef __H5T_ADJACENCIES_PRIVATE_H
#define __H5T_ADJACENCIES_PRIVATE_H
h5_err_t _h5t_rebuild_adj_data ( h5_file_t * const f );
h5_err_t _h5t_release_adjacencies ( h5_file_t * const f );
#endif
src/h5_core/h5t_boundaries.c
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@@ -1,305 +0,0 @@
#include <stdlib.h>
#include <string.h>
#include <hdf5.h>
#include "h5_core/h5_core.h"
#include "h5_core/h5_core_private.h"
static h5_err_t
_open_boundaries_group (
h5_file_t * const f
) {
struct h5t_fdata *t = f->t;
if ( t->cur_mesh < 0 )
return _h5t_error_undef_mesh ( f );
TRY( t->boundaries_gid = _h5_open_group (
f, t->mesh_gid, H5T_BOUNDARYMESH_GRPNAME ) );
return H5_SUCCESS;
}
static h5_err_t
_open_boundary_group (
h5_file_t * const f
) {
struct h5t_fdata *t = f->t;
boundary_t *boundary = &t->boundary;
if ( t->cur_mesh < 0 )
return _h5t_error_undef_mesh ( f );
if ( t->boundaries_gid < 0 ) {
TRY( _open_boundaries_group ( f ) );
}
boundary->gid = _h5_open_group (
f, t->boundaries_gid, boundary->name );
return H5_SUCCESS;
}
h5_id_t
h5t_get_num_boundaries (
h5_file_t * const f
) {
struct h5t_fdata *t = f->t;
if ( t->cur_mesh < 0 )
return _h5t_error_undef_mesh ( f );
if ( t->num_boundaries < 0 ) {
t->num_boundaries = hdf5_get_num_objects (
t->mesh_gid,
H5T_BOUNDARYMESH_GRPNAME,
H5G_GROUP );
}
if ( t->num_boundaries < 0 ) t->num_boundaries = 0;
return t->num_boundaries;
}
h5_err_t
h5t_set_boundary_label (
h5_file_t * const f,
const char * const bname
) {
return h5_error_not_implemented ( f, __FILE__, __func__, __LINE__ );
}
h5_err_t
h5t_get_boundary_label (
h5_file_t * const f,
char * const boundary_name,
const size_t size
) {
return h5_error_not_implemented ( f, __FILE__, __func__, __LINE__ );
}
h5_err_t
h5t_open_boundary (
h5_file_t * const f,
const h5_id_t boundary_id
) {
struct h5t_fdata *t = f->t;
boundary_t *boundary = &t->boundary;
TRY( h5t_close_boundary ( f ) );
if ( t->num_boundaries < 0 ) {
TRY( h5t_get_num_boundaries ( f ) );
}
if ( (boundary_id < -1) || (boundary_id >= t->num_boundaries) ) {
return HANDLE_H5_OUT_OF_RANGE_ERR( f, "boundary", boundary_id );
}
if ( boundary_id == -1 ) { /* append new boundary */
boundary->id = t->num_boundaries++;
boundary->changed = boundary_id;
} else {
boundary->id = boundary_id;
}
snprintf ( boundary->name, sizeof (boundary->name),
"%lld", boundary->id );
TRY( _open_boundary_group ( f ) );
return H5_SUCCESS;
}
h5_err_t
h5t_open_boundary_with_label (
h5_file_t * const f,
const char * const boundary_label
) {
return h5_error_not_implemented ( f, __FILE__, __func__, __LINE__ );
}
h5_err_t
_h5t_read_boundaryfaces (
h5_file_t * const f
) {
struct h5t_fdata *t = f->t;
boundary_t *boundary = &t->boundary;
hid_t diskspace_id;
const char * const dataset_name = "Faces";
hid_t dataset_id;
h5_size_t num_faces;
TRY ( dataset_id = _hdf_open_dataset ( f, boundary->gid, dataset_name ) );
TRY ( diskspace_id = _hdf_get_dataset_space ( f, dataset_id ) );
TRY ( num_faces = _hdf_get_npoints_of_dataspace ( f, diskspace_id ) );
TRY ( _hdf_close_dataspace( f, diskspace_id ) );
TRY ( _hdf_close_dataset( f, dataset_id ) );
TRY ( h5t_add_num_boundaryfaces ( f, num_faces ) );
TRY ( _hdf_read_dataset (
f,
dataset_id,
H5T_NATIVE_INT32,
H5S_ALL,
H5S_ALL,
f->xfer_prop,
boundary->faces ) );
TRY ( _hdf_close_dataset( f, dataset_id ) );
return H5_SUCCESS;
}
static hid_t
_open_space_all (
h5_file_t * const f,
hid_t dataset_id
) {
return H5S_ALL;
}
h5_err_t
_h5t_write_boundary (
h5_file_t * const f
) {
struct h5t_fdata *t = f->t;
boundary_t *boundary = &t->boundary;
return _h5_write_dataset_by_name (
f,
boundary->gid,
&boundary->dsinfo,
_open_space_all,
_open_space_all,
(void*)boundary->faces
);
}
h5_err_t
h5t_close_boundary (
h5_file_t * const f
) {
struct h5t_fdata *t = f->t;
boundary_t *boundary = &t->boundary;
if ( boundary->changed ) {
h5_err_t h5err = _h5t_write_boundary ( f );
if ( h5err < 0 ) return h5err;
}
if ( boundary->faces ) free ( boundary->faces );
if ( boundary->lfaces ) free ( boundary->faces );
if ( boundary->num_faces ) free ( boundary->num_faces );
if ( boundary->num_faces_on_level ) free ( boundary->num_faces_on_level );
bzero ( boundary, sizeof(*boundary) );
TRY( _hdf_close_group( f, boundary->gid ) );
boundary->id = -1;
boundary->gid = -1;
boundary->last_accessed_face = -1;
return H5_SUCCESS;
}
h5_err_t
h5t_add_num_boundaryfaces (
h5_file_t * const f,
const h5_id_t num_faces
) {
struct h5t_fdata *t = f->t;
boundary_t *b = &t->boundary;
size_t size = t->num_levels * sizeof(b->num_faces[0]);
TRY ( b->num_faces = _h5_alloc ( f, b->num_faces, size ) );
memset ( b->num_faces, 0, size );
size = t->num_levels * sizeof(b->num_faces_on_level[0]);
TRY ( b->num_faces_on_level = _h5_alloc ( f, b->num_faces_on_level, size ) );
memset ( b->num_faces_on_level, 0, size );
size = num_faces * sizeof(b->faces[0]);
TRY ( b->faces = _h5_alloc ( f, b->faces, size ) );
memset ( b->faces, -1, size );
size = num_faces*sizeof(b->lfaces[0]);
TRY ( b->lfaces = _h5_alloc ( f, b->lfaces, size ) );
memset ( b->lfaces, 0, size );
b->num_faces[0] = num_faces;
b->last_accessed_face = -1;
return H5_SUCCESS;
}
/*!
Number of boundary faces in current level
*/
h5_id_t
h5t_get_num_boundaryfaces (
h5_file_t * const f
) {
return h5_error_not_implemented ( f, __FILE__, __func__, __LINE__ );
}
h5_id_t
h5t_store_boundaryface (
h5_file_t * const f,
h5_id_t * const global_vids
) {
return h5_error_not_implemented (
f, __FILE__, __func__, __LINE__ );
}
h5_id_t
h5t_store_boundaryface_local_id (
h5_file_t * const f,
const h5_id_t local_fid
) {
struct h5t_fdata *t = f->t;
boundary_t *boundary = &t->boundary;
if ( boundary->num_faces == NULL )
return HANDLE_H5_OVERFLOW_ERR (
f,
"boundary faces",
(h5_ssize_t)-1 );
if ( ++(boundary->last_accessed_face) >= boundary->num_faces[0] )
return HANDLE_H5_OVERFLOW_ERR (
f,
"boundary faces",
boundary->num_faces[0] );
switch ( t->mesh_type ) {
case H5_OID_TETRAHEDRON: {
h5_id_t local_tet_id = _h5t_get_elem_idx ( local_fid );
if ( t->elems.tets[local_tet_id].global_parent_eid != -1 ) {
return _h5t_error_store_boundaryface_local_id (
f,
local_fid );
}
h5_id_t global_tid = h5t_map_local_triangle_id2global(
f, local_fid );
boundary->faces[boundary->last_accessed_face] = global_tid;
return H5_SUCCESS;
}
default:
return h5_error_not_implemented (
f, __FILE__, __func__, __LINE__ );
}
}
h5_err_t
h5t_start_traverse_boundary_faces (
h5_file_t * const f
) {
struct h5t_fdata *t = f->t;
boundary_t *boundary = &t->boundary;
if ( boundary->faces == NULL ) {
TRY( _h5t_read_boundaryfaces ( f ) );
}
boundary->last_accessed_face = -1;
return H5_SUCCESS;
}
h5_id_t
h5t_traverse_boundary_faces (
h5_file_t * const f,
h5_id_t * const global_id,
h5_id_t * const parent_id,
h5_id_t vids[]
) {
return h5_error_not_implemented ( f, __FILE__, __func__, __LINE__ );
}
src/h5_core/h5t_boundaries.h
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#ifndef __H5T_BOUNDARIES_H
#define __H5T_BOUNDARIES_H
h5_err_t
h5t_open_boundary (
h5_file_t * const f,
const h5_id_t boundary_id
);
h5_err_t
h5t_close_boundary (
h5_file_t * const f
);
h5_err_t
h5t_add_num_boundaryfaces (
h5_file_t * const f,
const h5_id_t num
);
h5_id_t
h5t_get_num_boundaryfaces (
h5_file_t * const f
);
h5_id_t
h5t_store_boundaryface (
h5_file_t * const f,
h5_id_t * const vertices
);
h5_id_t
h5t_store_boundaryface_local_id (
h5_file_t * const f,
const h5_id_t local_fid
);
h5_err_t
h5t_start_traverse_boundary_faces (
h5_file_t * const f
);
h5_id_t
h5t_traverse_boundary_faces (
h5_file_t * const f,
h5_id_t * const global_id,
h5_id_t * const parent_id,
h5_id_t vids[]
);
#endif
src/h5_core/h5t_boundaries_private.h
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@@ -1,6 +0,0 @@
#ifndef __H5T_BOUNDARIES_PRIVATE_H
#define __H5T_BOUNDARIES_PRIVATE_H
#define H5T_BOUNDARYMESH_GRPNAME "Boundaries"
#endif