- renamed functions:

h5_get_num_hdf5_groups() -> hdf5_get_num_groups()
  h5_get_num_hdf5_groups_matching_prefix() -> hdf5_get_num_groups_matching_prefix()
  h5_get_hdf5_groupname_by_idx() -> h5_get_hdf5_groupname_by_idx()
  h5_get_hdf5_groupname_by_idx() -> hdf5_get_num_datasets()
  h5_get_hdf5_datasetname_by_idx() -> hdf5_get_name_of_dataset_by_idx()
  h5_get_objname() -> hdf5_get_objname()
- added functions:
  hdf5_get_dataset_info_by_idx()
- changed args:
  h5_get_dataset_type(): file handle removed
This commit is contained in:
2011-03-11 15:08:02 +00:00
parent a8dd08c5bf
commit b0c321dd54
11 changed files with 137 additions and 99 deletions
+1
View File
@@ -68,6 +68,7 @@
#define H5_BLOCKNAME_X "0"
#define H5_BLOCKNAME_Y "1"
#define H5_BLOCKNAME_Z "2"
#define H5_ATTACHMENT "Attachment"
#include "h5_types_private.h"
+2 -2
View File
@@ -3,13 +3,13 @@
#define HANDLE_H5_DATASET_RANK_ERR( m, n ) \
h5_error( \
H5_ERR_INVAL, \
H5_ERR_INVAL, \
"Wrong rank of dataset: Is %d, but should be %d", \
m, n );
#define HANDLE_H5_GROUP_EXISTS_ERR( name ) \
h5_error( \
H5_ERR_INVAL, \
H5_ERR_INVAL, \
"Group \"%s\" already exists", name )
/**************** H5 *********************/
+105 -75
View File
@@ -13,17 +13,17 @@ hdf5_open_group (
const char* const group_name
) {
HDF5_WRAPPER_ENTER3 (hid_t,
"loc_id=%d (%s), group_name=\"%s\"",
loc_id,
h5_get_objname (loc_id),
group_name);
"loc_id=%d (%s), group_name=\"%s\"",
loc_id,
hdf5_get_objname (loc_id),
group_name);
hid_t group_id = H5Gopen (loc_id, group_name, H5P_DEFAULT);
if (group_id < 0)
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot open group \"%s/%s\".",
h5_get_objname (loc_id),
hdf5_get_objname (loc_id),
group_name));
HDF5_WRAPPER_RETURN (group_id);
}
@@ -36,7 +36,7 @@ hdf5_create_group (
HDF5_WRAPPER_ENTER3 (hid_t,
"loc_id=%d (%s), group_name=\"%s\"",
loc_id,
h5_get_objname (loc_id),
hdf5_get_objname (loc_id),
group_name);
hid_t group_id = H5Gcreate (
loc_id, group_name, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT);
@@ -45,7 +45,7 @@ hdf5_create_group (
h5_error (
H5_ERR_HDF5,
"Cannot create group \"%s/%s\".",
h5_get_objname (loc_id),
hdf5_get_objname (loc_id),
group_name));
HDF5_WRAPPER_RETURN (group_id);
}
@@ -68,7 +68,7 @@ h5priv_open_group (
H5_PRIV_API_ENTER3 (hid_t,
"loc_id=%d (%s), group_name=\"%s\"",
loc_id,
h5_get_objname (loc_id),
hdf5_get_objname (loc_id),
group_name);
/*
@@ -105,7 +105,7 @@ hdf5_close_group (
HDF5_WRAPPER_ENTER2 (h5_err_t,
"group_id=%d (%s)",
group_id,
h5_get_objname (group_id));
hdf5_get_objname (group_id));
if (group_id == 0 || group_id == -1)
HDF5_WRAPPER_LEAVE (H5_SUCCESS);
@@ -114,7 +114,7 @@ hdf5_close_group (
h5_error (
H5_ERR_HDF5,
"Cannot terminate access to group \"%s\").",
h5_get_objname (group_id)));
hdf5_get_objname (group_id)));
}
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
@@ -126,14 +126,14 @@ hdf5_get_num_objs_in_group (
HDF5_WRAPPER_ENTER2 (h5_ssize_t,
"group_id=%d (%s)",
group_id,
h5_get_objname (group_id));
hdf5_get_objname (group_id));
H5G_info_t group_info;
if (H5Gget_info (group_id, &group_info) < 0) {
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot get number of objects in group \"%s\".",
h5_get_objname(group_id)));
hdf5_get_objname(group_id)));
}
HDF5_WRAPPER_RETURN ((h5_ssize_t)group_info.nlinks);
}
@@ -153,7 +153,7 @@ hdf5_get_objname_by_idx (
HDF5_WRAPPER_ENTER3 (h5_ssize_t,
"loc_id=%d (%s), idx=%lld",
loc_id,
h5_get_objname (loc_id),
hdf5_get_objname (loc_id),
(long long)idx);
if (name == NULL) {
@@ -170,7 +170,7 @@ hdf5_get_objname_by_idx (
H5_ERR_HDF5,
"Cannot get name of object %llu in group \"%s\".",
(unsigned long long)idx,
h5_get_objname (loc_id)));
hdf5_get_objname (loc_id)));
HDF5_WRAPPER_RETURN (len);
}
@@ -190,7 +190,7 @@ hdf5_open_dataset (
HDF5_WRAPPER_ENTER3 (hid_t,
"loc_id=%d (%s), dataset_name=\"%s\"",
loc_id,
h5_get_objname (loc_id),
hdf5_get_objname (loc_id),
dataset_name);
hid_t dataset_id = H5Dopen (
loc_id,
@@ -201,7 +201,7 @@ hdf5_open_dataset (
h5_error (
H5_ERR_HDF5,
"Cannot open dataset \"%s/%s\".",
h5_get_objname (loc_id),
hdf5_get_objname (loc_id),
dataset_name));
HDF5_WRAPPER_RETURN (dataset_id);
}
@@ -228,7 +228,7 @@ hdf5_create_dataset (
HDF5_WRAPPER_ENTER3 (hid_t,
"loc_id=%d (%s), dataset_name=\"%s\"",
loc_id,
h5_get_objname (loc_id),
hdf5_get_objname (loc_id),
dataset_name);
hid_t dataset_id = H5Dcreate (
loc_id,
@@ -243,7 +243,7 @@ hdf5_create_dataset (
h5_error(
H5_ERR_HDF5,
"Cannot create dataset \"%s/%s\"",
h5_get_objname (loc_id),
hdf5_get_objname (loc_id),
dataset_name));
HDF5_WRAPPER_RETURN (dataset_id);
}
@@ -261,7 +261,7 @@ hdf5_close_dataset (
HDF5_WRAPPER_ENTER2 (h5_err_t,
"dataset_id=%d (%s)",
dataset_id,
h5_get_objname (dataset_id));
hdf5_get_objname (dataset_id));
if (dataset_id == 0 || dataset_id == -1)
HDF5_WRAPPER_LEAVE (H5_SUCCESS);
@@ -270,7 +270,7 @@ hdf5_close_dataset (
h5_error(
H5_ERR_HDF5,
"Close of dataset \"%s\" failed.",
h5_get_objname (dataset_id)));
hdf5_get_objname (dataset_id)));
}
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
@@ -289,14 +289,14 @@ hdf5_get_dataset_space (
HDF5_WRAPPER_ENTER2 (hid_t,
"dataset_id=%d (%s)",
dataset_id,
h5_get_objname(dataset_id));
hdf5_get_objname(dataset_id));
hid_t dataspace_id = H5Dget_space (dataset_id);
if (dataspace_id < 0)
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot get dataspace for dataset \"%s\".",
h5_get_objname (dataset_id)));
hdf5_get_objname (dataset_id)));
HDF5_WRAPPER_RETURN (dataspace_id);
}
@@ -325,7 +325,7 @@ hdf5_write_dataset (
HDF5_WRAPPER_ENTER3 (h5_err_t,
"dataset_id=%d (%s) type_id=%d",
dataset_id,
h5_get_objname(dataset_id),
hdf5_get_objname(dataset_id),
type_id);
herr_t herr = H5Dwrite (
@@ -340,7 +340,7 @@ hdf5_write_dataset (
h5_error (
H5_ERR_HDF5,
"Write to dataset \"%s\" failed.", \
h5_get_objname (dataset_id)));
hdf5_get_objname (dataset_id)));
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
@@ -359,7 +359,7 @@ hdf5_read_dataset (
HDF5_WRAPPER_ENTER3 (h5_err_t,
"dataset_id=%d (%s) type_id=%d",
dataset_id,
h5_get_objname(dataset_id),
hdf5_get_objname(dataset_id),
type_id);
herr_t herr = H5Dread (
dataset_id,
@@ -373,7 +373,7 @@ hdf5_read_dataset (
h5_error(
H5_ERR_HDF5,
"Error reading dataset \"%s\".",
h5_get_objname (dataset_id)));
hdf5_get_objname (dataset_id)));
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
@@ -385,7 +385,7 @@ hdf5_get_dataset_type (
HDF5_WRAPPER_ENTER2 (h5_err_t,
"dataset_id=%d (%s)",
dataset_id,
h5_get_objname(dataset_id));
hdf5_get_objname(dataset_id));
hid_t datatype_id = H5Dget_type (dataset_id);
if (datatype_id < 0)
HDF5_WRAPPER_LEAVE (
@@ -405,14 +405,14 @@ hdf5_set_dataset_extent (
HDF5_WRAPPER_ENTER3 (h5_err_t,
"dataset_id=%d (%s), size=%llu",
dataset_id,
h5_get_objname(dataset_id),
hdf5_get_objname(dataset_id),
*size);
if (H5Dset_extent(dataset_id, size) < 0) {
HDF5_WRAPPER_LEAVE (
h5_error(
H5_ERR_HDF5,
"Changing size of dataset \"%s\" dimensions failed.",
h5_get_objname (dataset_id)));
hdf5_get_objname (dataset_id)));
}
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
@@ -424,7 +424,7 @@ hdf5_get_npoints_of_dataset (
HDF5_WRAPPER_ENTER2 (h5_ssize_t,
"dataset_id=%d (%s)",
dataset_id,
h5_get_objname(dataset_id));
hdf5_get_objname(dataset_id));
hid_t dspace_id;
hsize_t size;
TRY (dspace_id = hdf5_get_dataset_space (dataset_id));
@@ -441,7 +441,7 @@ hdf5_get_npoints_of_dataset_by_name (
HDF5_WRAPPER_ENTER3 (h5_ssize_t,
"loc_id=%d (%s), name=\"%s\"",
loc_id,
h5_get_objname(loc_id),
hdf5_get_objname(loc_id),
name);
hid_t dset_id;
hsize_t size;
@@ -809,14 +809,14 @@ hdf5_get_dataset_create_plist (
) {
HDF5_WRAPPER_ENTER2 (hid_t, "dataset_id=%d (%s)",
dataset_id,
h5_get_objname (dataset_id));
hdf5_get_objname (dataset_id));
hid_t plist_id = H5Dget_create_plist (dataset_id);
if (plist_id < 0)
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot get create properties for dataset \"%s\".",
h5_get_objname (dataset_id)));
hdf5_get_objname (dataset_id)));
HDF5_WRAPPER_RETURN (plist_id);
}
@@ -1015,13 +1015,13 @@ hdf5_close_file (
HDF5_WRAPPER_ENTER2 (h5_err_t,
"file_id=%d (%s)",
file_id,
h5_get_objname (file_id));
hdf5_get_objname (file_id));
if (H5Fclose (file_id) < 0)
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot close file \"%s\".",
h5_get_objname (file_id)));
hdf5_get_objname (file_id)));
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
@@ -1052,7 +1052,7 @@ hdf5_open_attribute (
) {
HDF5_WRAPPER_ENTER3 (hid_t,
"loc_id=%d (%s), attr_name=\"%s\"",
loc_id, h5_get_objname (loc_id), attrib_name);
loc_id, hdf5_get_objname (loc_id), attrib_name);
hid_t attrib_id = H5Aopen (loc_id, attrib_name, H5P_DEFAULT);
if (attrib_id < 0)
HDF5_WRAPPER_LEAVE (
@@ -1060,7 +1060,7 @@ hdf5_open_attribute (
H5_ERR_HDF5,
"Cannot open attribute \"%s\" of \"%s\".",
attrib_name,
h5_get_objname (loc_id)));
hdf5_get_objname (loc_id)));
HDF5_WRAPPER_RETURN (attrib_id);
}
@@ -1071,7 +1071,7 @@ hdf5_open_attribute_idx (
) {
HDF5_WRAPPER_ENTER3 (hid_t,
"loc_id=%d (%s), idx=%u",
loc_id, h5_get_objname (loc_id), idx);
loc_id, hdf5_get_objname (loc_id), idx);
hid_t attr_id = H5Aopen_idx (loc_id, idx);
if (attr_id < 0)
HDF5_WRAPPER_LEAVE (
@@ -1079,7 +1079,7 @@ hdf5_open_attribute_idx (
H5_ERR_HDF5,
"Cannot open attribute \"%u\" of \"%s\".",
idx,
h5_get_objname (loc_id)));
hdf5_get_objname (loc_id)));
HDF5_WRAPPER_RETURN (attr_id);
}
@@ -1091,7 +1091,7 @@ hdf5_open_attribute_by_name (
) {
HDF5_WRAPPER_ENTER4 (hid_t,
"loc_id=%d (%s), obj_name=\"%s\", attr_name=\"%s\"",
loc_id, h5_get_objname (loc_id),
loc_id, hdf5_get_objname (loc_id),
obj_name, attr_name);
hid_t attr_id = H5Aopen_by_name (
loc_id,
@@ -1120,7 +1120,7 @@ hdf5_create_attribute (
) {
HDF5_WRAPPER_ENTER4 (hid_t,
"loc_id=%d (%s), attr_name=\"%s\", type_id=%d",
loc_id, h5_get_objname (loc_id),
loc_id, hdf5_get_objname (loc_id),
attr_name, type_id);
hid_t attr_id = H5Acreate (
loc_id,
@@ -1135,7 +1135,7 @@ hdf5_create_attribute (
H5_ERR_HDF5,
"Cannot create attribute \"%s\" for \"%s\".",
attr_name,
h5_get_objname (loc_id)));
hdf5_get_objname (loc_id)));
HDF5_WRAPPER_RETURN (attr_id);
}
@@ -1147,14 +1147,14 @@ hdf5_read_attribute (
) {
HDF5_WRAPPER_ENTER4 (h5_err_t,
"attr_id=%d (%s), mem_type_id=%d, buf=0x%p",
attr_id, h5_get_objname (attr_id),
attr_id, hdf5_get_objname (attr_id),
mem_type_id, buf);
if (H5Aread (attr_id, mem_type_id, buf) < 0)
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot read attribute \"%s\".",
h5_get_objname (attr_id)));
hdf5_get_objname (attr_id)));
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
@@ -1169,14 +1169,14 @@ hdf5_write_attribute (
) {
HDF5_WRAPPER_ENTER4 (h5_err_t,
"attr_id=%d (%s), mem_type_id=%d, buf=0x%p",
attr_id, h5_get_objname (attr_id),
attr_id, hdf5_get_objname (attr_id),
mem_type_id, buf);
if (H5Awrite (attr_id, mem_type_id, buf) < 0)
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot write attribute \"%s\".",
h5_get_objname (attr_id)));
hdf5_get_objname (attr_id)));
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
@@ -1189,7 +1189,7 @@ hdf5_get_attribute_name (
) {
HDF5_WRAPPER_ENTER4 (h5_ssize_t,
"attr_id=%d (%s), buf_size=%llu, buf=0x%p",
attr_id, h5_get_objname (attr_id),
attr_id, hdf5_get_objname (attr_id),
(unsigned long long)buf_size, buf);
ssize_t size = H5Aget_name ( attr_id, buf_size, buf );
if (size < 0)
@@ -1206,14 +1206,14 @@ hdf5_get_attribute_type (
) {
HDF5_WRAPPER_ENTER2 (hid_t,
"attr_id=%d (%s)",
attr_id, h5_get_objname (attr_id));
attr_id, hdf5_get_objname (attr_id));
hid_t datatype_id = H5Aget_type (attr_id);
if (datatype_id < 0)
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot get type of attribute \"%s\".",
h5_get_objname (attr_id)));
hdf5_get_objname (attr_id)));
HDF5_WRAPPER_RETURN (datatype_id);
}
@@ -1223,14 +1223,14 @@ hdf5_get_attribute_dataspace (
) {
HDF5_WRAPPER_ENTER2 (hid_t,
"attr_id=%d (%s)",
attr_id, h5_get_objname (attr_id));
attr_id, hdf5_get_objname (attr_id));
hid_t space_id = H5Aget_space (attr_id);
if (space_id < 0)
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot get dataspace of attribute \"%s\".",
h5_get_objname (attr_id)));
hdf5_get_objname (attr_id)));
HDF5_WRAPPER_RETURN (space_id);
}
@@ -1240,14 +1240,14 @@ hdf5_get_num_attribute (
) {
HDF5_WRAPPER_ENTER2 (int,
"loc_id=%d (%s)",
loc_id, h5_get_objname (loc_id));
loc_id, hdf5_get_objname (loc_id));
int num = H5Aget_num_attrs (loc_id);
if (num < 0)
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot get number of attributes of \"%s\".",
h5_get_objname (loc_id)));
hdf5_get_objname (loc_id)));
HDF5_WRAPPER_RETURN (num);
}
@@ -1258,13 +1258,13 @@ hdf5_close_attribute (
) {
HDF5_WRAPPER_ENTER2 (h5_err_t,
"attr_id=%d (%s)",
attr_id, h5_get_objname (attr_id));
attr_id, hdf5_get_objname (attr_id));
if (H5Aclose (attr_id))
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot close attribute \"%s\".",
h5_get_objname (attr_id)));
hdf5_get_objname (attr_id)));
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
@@ -1277,7 +1277,7 @@ hdf5_link_exists (
) {
HDF5_WRAPPER_ENTER3 (h5_err_t,
"loc_id=%d (%s), name=\"%s\"",
loc_id, h5_get_objname (loc_id), name);
loc_id, hdf5_get_objname (loc_id), name);
/* Save old error handler */
H5E_auto2_t old_func;
void *old_client_data;
@@ -1298,7 +1298,7 @@ hdf5_link_exists (
h5_error (
H5_ERR_HDF5,
"Cannot query link %s/%s.",
h5_get_objname (loc_id), name));
hdf5_get_objname (loc_id), name));
HDF5_WRAPPER_RETURN (exists);
}
@@ -1310,13 +1310,13 @@ hdf5_delete_link (
) {
HDF5_WRAPPER_ENTER4 (h5_err_t,
"loc_id=%d (%s), name=\"%s\", lapl_id=%d",
loc_id, h5_get_objname (loc_id), name, lapl_id);
loc_id, hdf5_get_objname (loc_id), name, lapl_id);
if (H5Ldelete (loc_id, name, lapl_id) < 0)
HDF5_WRAPPER_LEAVE (
h5_error (
H5_ERR_HDF5,
"Cannot remove link %s/%s.",
h5_get_objname (loc_id), name));
hdf5_get_objname (loc_id), name));
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
@@ -1455,11 +1455,11 @@ iter_op_count_match (
}
ssize_t
h5_get_num_hdf5_groups (
hdf5_get_num_groups (
const hid_t loc_id
) {
HDF5_WRAPPER_ENTER2 (ssize_t,
"loc_id=%d (%s)", loc_id, h5_get_objname (loc_id));
"loc_id=%d (%s)", loc_id, hdf5_get_objname (loc_id));
op_data_t op_data;
memset (&op_data, 0, sizeof (op_data));
op_data.type = H5O_TYPE_GROUP;
@@ -1472,19 +1472,19 @@ h5_get_num_hdf5_groups (
h5_error (
H5_ERR_HDF5,
"Cannot get number of groups in \"%s\".",
h5_get_objname (loc_id)));
hdf5_get_objname (loc_id)));
}
HDF5_WRAPPER_RETURN (op_data.cnt);
}
ssize_t
h5_get_num_hdf5_groups_matching_prefix (
hdf5_get_num_groups_matching_prefix (
const hid_t loc_id,
char* prefix
) {
HDF5_WRAPPER_ENTER3 (ssize_t,
"loc_id=%d (%s), prefix=\"%s\"",
loc_id, h5_get_objname (loc_id), prefix);
loc_id, hdf5_get_objname (loc_id), prefix);
op_data_t op_data;
memset (&op_data, 0, sizeof (op_data));
op_data.type = H5O_TYPE_GROUP;
@@ -1499,13 +1499,13 @@ h5_get_num_hdf5_groups_matching_prefix (
H5_ERR_HDF5,
"Cannot get number of groups with prefix"
" \"%s\" in \"%s\".",
prefix, h5_get_objname (loc_id)));
prefix, hdf5_get_objname (loc_id)));
}
HDF5_WRAPPER_RETURN (op_data.cnt);
}
h5_err_t
h5_get_hdf5_groupname_by_idx (
hdf5_get_name_of_group_by_idx (
hid_t loc_id,
hsize_t idx,
char *name,
@@ -1513,7 +1513,7 @@ h5_get_hdf5_groupname_by_idx (
) {
HDF5_WRAPPER_ENTER5 (h5_err_t,
"loc_id=%d (%s), idx=%llu, name=0x%p, len=%llu",
loc_id, h5_get_objname (loc_id),
loc_id, hdf5_get_objname (loc_id),
idx, name, (unsigned long long)len);
op_data_t op_data;
memset (&op_data, 0, sizeof (op_data));
@@ -1533,17 +1533,17 @@ h5_get_hdf5_groupname_by_idx (
"Cannot get name of group with index"
" \"%lu\" in \"%s\".",
(long unsigned int)idx,
h5_get_objname (loc_id)));
hdf5_get_objname (loc_id)));
}
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
ssize_t
h5_get_num_hdf5_datasets (
hdf5_get_num_datasets (
const hid_t loc_id
) {
HDF5_WRAPPER_ENTER2 (ssize_t,
"loc_id=%d (%s)", loc_id, h5_get_objname (loc_id));
"loc_id=%d (%s)", loc_id, hdf5_get_objname (loc_id));
op_data_t op_data;
memset (&op_data, 0, sizeof (op_data));
op_data.type = H5O_TYPE_DATASET;
@@ -1556,7 +1556,7 @@ h5_get_num_hdf5_datasets (
h5_error (
H5_ERR_HDF5,
"Cannot get number of datasets in \"%s\".",
h5_get_objname (loc_id)));
hdf5_get_objname (loc_id)));
}
HDF5_WRAPPER_RETURN (op_data.cnt);
}
@@ -1565,7 +1565,7 @@ h5_get_num_hdf5_datasets (
Get name of the \c idx th dataset in group \c loc_id.
*/
h5_err_t
h5_get_hdf5_datasetname_by_idx (
hdf5_get_name_of_dataset_by_idx (
hid_t loc_id,
hsize_t idx,
char *name,
@@ -1573,7 +1573,7 @@ h5_get_hdf5_datasetname_by_idx (
) {
HDF5_WRAPPER_ENTER5 (h5_err_t,
"loc_id=%d (%s), idx=%llu, name=0x%p, len=%llu",
loc_id, h5_get_objname (loc_id),
loc_id, hdf5_get_objname (loc_id),
idx, name, (unsigned long long)len);
op_data_t op_data;
memset (&op_data, 0, sizeof (op_data));
@@ -1593,15 +1593,45 @@ h5_get_hdf5_datasetname_by_idx (
"Cannot get name of dataset with index"
" \"%lu\" in \"%s\".",
(long unsigned int)idx,
h5_get_objname (loc_id)));
hdf5_get_objname (loc_id)));
}
HDF5_WRAPPER_RETURN (H5_SUCCESS);
}
h5_err_t
hdf5_get_dataset_info_by_idx (
const hid_t loc_id, /*!< [in] Group */
const hsize_t idx, /*!< [in] Index of the dataset */
char* const name, /*!< [out] Name of dataset */
const size_t len_name, /*!< [in] Size of buffer \c name */
h5_int64_t* const type, /*!< [out] Type of data in dataset */
hsize_t* const npoints /*!< [out] Number of elements. */
) {
HDF5_WRAPPER_ENTER5 (h5_err_t,
"loc_id=%d (%s), idx=%llu, name=0x%p, len_name=%llu",
loc_id, hdf5_get_objname (loc_id),
idx, name, (unsigned long long)len_name);
TRY (hdf5_get_name_of_dataset_by_idx (loc_id, idx, name, len_name));
if (npoints) {
h5_ssize_t np;
TRY (np = hdf5_get_npoints_of_dataset_by_name (loc_id, name));
*npoints = np;
}
if (type) {
h5_int64_t t;
TRY (t = h5_get_dataset_type (loc_id, name));
*type = t;
}
H5_CORE_API_RETURN (H5_SUCCESS);
}
/****** I d e n t i f i e r **************************************************/
const char *
h5_get_objname (
hdf5_get_objname (
hid_t id
) {
static char objname[256];
+1 -1
View File
@@ -2,7 +2,7 @@
h5_size_t
h5_get_num_steps(
return h5_get_num_hdf5_groups_matching_prefix (
return hdf5_get_num_groups_matching_prefix (
f,
f->step_gid,
f->prefix_step_name);
+1 -1
View File
@@ -437,7 +437,7 @@ h5_size_t
h5_get_num_steps(
h5_file_t* const f /*!< file handle */
) {
return h5_get_num_hdf5_groups_matching_prefix (
return hdf5_get_num_groups_matching_prefix (
f->step_gid,
f->prefix_step_name);
}
+3 -5
View File
@@ -23,13 +23,13 @@ h5priv_write_dataset_by_name (
) {
H5_PRIV_API_ENTER (h5_err_t);
h5_info ("Writing dataset %s/%s.",
h5_get_objname (loc_id), dsinfo->name);
hdf5_get_objname (loc_id), dsinfo->name);
h5_err_t exists;
TRY (exists = hdf5_link_exists (loc_id, dsinfo->name));
if ((exists > 0) && ((f->mode==H5_O_WRONLY) || (f->mode==H5_O_APPEND))) {
h5_warn ("Dataset %s/%s already exist.",
h5_get_objname (loc_id), dsinfo->name);
hdf5_get_objname (loc_id), dsinfo->name);
H5_PRIV_API_LEAVE (h5priv_handle_file_mode_error(f->mode));
}
@@ -214,11 +214,9 @@ h5_normalize_h5_type (
h5_int64_t
h5_get_dataset_type(
h5_file_t* const f,
hid_t group_id,
const hid_t group_id,
const char* dset_name
) {
UNUSED_ARGUMENT (f);
H5_CORE_API_ENTER (h5_int64_t);
hid_t dset_id;
hid_t hdf5_type;
+1 -1
View File
@@ -29,7 +29,7 @@ h5t_get_num_meshes (
TRY (meshes_gid = hdf5_open_group (topo_gid, h5tpriv_meshes_grpnames[type_id]));
h5_ssize_t num_meshes;
TRY (num_meshes = h5_get_num_hdf5_groups (meshes_gid));
TRY (num_meshes = hdf5_get_num_groups (meshes_gid));
TRY (hdf5_close_group (meshes_gid) );
TRY (hdf5_close_group (topo_gid) );
+4 -4
View File
@@ -28,7 +28,7 @@ h5u_get_num_particles (
* for this timestep */
char dataset_name[H5_DATANAME_LEN];
dataset_name[0] = '\0';
h5_err_t exists = h5_get_hdf5_datasetname_by_idx(
h5_err_t exists = hdf5_get_name_of_dataset_by_idx (
f->step_gid,
0,
dataset_name,
@@ -403,7 +403,7 @@ h5u_get_num_datasets (
h5_file_t *const f /*!< [in] Handle to open file */
) {
H5_CORE_API_ENTER (h5_ssize_t);
H5_CORE_API_RETURN (h5_get_num_hdf5_datasets (f->step_gid ));
H5_CORE_API_RETURN (hdf5_get_num_datasets (f->step_gid));
}
/*!
@@ -420,7 +420,7 @@ h5u_get_dataset_info (
h5_size_t *nelem /*!< [out] Number of elements. */
) {
H5_CORE_API_ENTER (h5_err_t);
TRY (h5_get_hdf5_datasetname_by_idx (
TRY (hdf5_get_name_of_dataset_by_idx (
f->step_gid,
idx,
dataset_name, len_dataset_name) );
@@ -435,7 +435,7 @@ h5u_get_dataset_info (
}
if ( type ) {
*type = h5_get_dataset_type( f, f->step_gid, dataset_name );
*type = h5_get_dataset_type (f->step_gid, dataset_name);
if ( *type < 0 ) return *type;
}
+2 -2
View File
@@ -126,7 +126,7 @@ h5u_write_data (
if (dset_id > 0) {
h5_warn("Dataset %s/%s already exists",
h5_get_objname(f->step_gid), name2);
hdf5_get_objname(f->step_gid), name2);
} else {
TRY (dset_id = hdf5_create_dataset (
f->step_gid,
@@ -140,7 +140,7 @@ h5u_write_data (
TRY (h5_start_throttle (f));
#endif
h5_info ("Writing dataset %s/%s.",
h5_get_objname(f->step_gid), name2);
hdf5_get_objname(f->step_gid), name2);
TRY (hdf5_write_dataset (
dset_id,
type,
+16 -6
View File
@@ -2,18 +2,18 @@
#define __H5_HDF5_H
ssize_t
h5_get_num_hdf5_groups (
hdf5_get_num_groups (
const hid_t loc_id
);
ssize_t
h5_get_num_hdf5_groups_matching_prefix (
hdf5_get_num_groups_matching_prefix (
const hid_t loc_id,
char* prefix
);
h5_err_t
h5_get_hdf5_groupname_by_idx (
hdf5_get_name_of_group_by_idx (
hid_t loc_id,
hsize_t idx,
char *name,
@@ -21,20 +21,30 @@ h5_get_hdf5_groupname_by_idx (
);
ssize_t
h5_get_num_hdf5_datasets (
hdf5_get_num_datasets (
const hid_t loc_id
);
h5_err_t
h5_get_hdf5_datasetname_by_idx (
hdf5_get_name_of_dataset_by_idx (
hid_t loc_id,
hsize_t idx,
char *name,
size_t len
);
h5_err_t
hdf5_get_dataset_info_by_idx (
const hid_t loc_id,
const hsize_t idx,
char* const name,
const size_t len_name,
h5_int64_t* const type,
hsize_t* const npoints
);
const char *
h5_get_objname (
hdf5_get_objname (
hid_t id
);
+1 -2
View File
@@ -14,8 +14,7 @@ h5_normalize_h5_type (
h5_int64_t
h5_get_dataset_type(
h5_file_t * const f,
hid_t group_id,
const hid_t group_id,
const char *dataset_name
);