test/h5t/Makefile.am

test/h5u/Makefile.am
test/h5b/H5BlockTestAttributes.c
test/h5b/Makefile.am
src/H5Part.c
src/H5Block.c
src/H5Part.h
src/Makefile.am
src/h5/errorhandling.c
src/h5/h5_types.h
src/h5/attribs.c
src/h5/t_readwrite.c
src/h5/u_readwrite.c
src/h5/t_openclose.c
src/h5/h5_private.h
src/h5/readwrite.c
src/h5/openclose.c
src/h5/Makefile.am
- changes due to removed H5PartTypes.h, H5BlockTyes.h and H5PartPrivate.h

src/H5Block.c

@@ -43,14 +43,11 @@
 #include <string.h>
 
 #include <hdf5.h>
-#include "H5Part.h"
-#include "H5PartPrivate.h"
 
-#include "H5BlockTypes.h"
-#include "H5Block.h"
 #include "h5/h5.h"
 #include "h5/h5_private.h"
-
+#include "H5Part.h"
+#include "H5Block.h"
 
 /********************** declarations *****************************************/
 

src/H5Part.c

@@ -90,11 +90,9 @@ Last modified on April 19, 2007.
 #define close _close
 #endif /* WIN32 */
 
-#include "H5PartTypes.h"
-#include "H5Part.h"
-#include "H5PartPrivate.h"
 #include "h5/h5.h"
 #include "h5/h5_private.h"
+#include "H5Part.h"
 
 extern h5part_error_handler	_err_handler;
 extern h5part_int64_t		_h5part_errno;

src/H5Part.h

@@ -4,6 +4,7 @@
 #include <stdlib.h>
 #include <stdarg.h>
 #include <hdf5.h>
+#include "h5.h"
 #ifdef PARALLEL_IO
 #include <mpi.h>
 #endif
@@ -12,8 +13,6 @@
 extern "C" {
 #endif
 
-#include "H5PartTypes.h"
-
 #define H5PART_SUCCESS		H5_SUCCESS
 #define H5PART_ERR_NOMEM	H5_ERR_NOMEM
 #define H5PART_ERR_INVAL	H5_ERR_INVAL

src/Makefile.am

@@ -10,7 +10,7 @@ CC = @CC@
 HDFINC = -I$(HDF5ROOT)/include
 MPIINC = @MPIINC@
 
-INC = $(HDFINC) ${MPIINC}
+INC = $(HDFINC) ${MPIINC} -I./h5
 
 # H5Part header file location
 H5PINC = -I@prefix@/include
@@ -44,13 +44,11 @@ EXTRA_LIBRARIES = libH5Part.a
 # Header files that I wish to install in $(prefix)/include
 include_HEADERS = \
 	H5Part.h \
-	H5PartTypes.h \
 	H5Block.h \
-	H5BlockTypes.h \
 	H5Fed.h
 
 # Listing of all possible headers that I may include
-EXTRA_HEADERS = H5PartPrivate.h H5BlockPrivate.h
+EXTRA_HEADERS =
 
 # Listing of sources
 libH5Part_a_SOURCES = \
@@ -72,8 +70,8 @@ libH5Part.a: $(libH5Part_a_OBJECTS)
 %.o : %.c
 	$(CC) $(CFLAGS) $(INC) -c $<
 
-H5Part.o: H5Part.c H5Part.h H5PartPrivate.h H5PartTypes.h
-H5Block.o: H5Block.c H5Part.h H5PartPrivate.h H5PartTypes.h H5Block.h H5BlockTypes.h
+H5Part.o: H5Part.c H5Part.h
+H5Block.o: H5Block.c H5Part.h H5Block.h
 
 clean: clean-recursive
 	$(RM) -f *~ *.o *.a *.so

src/h5/Makefile.am

@@ -12,7 +12,7 @@ CC = @CC@
 HDFINC = -I$(HDF5ROOT)/include
 MPIINC = @MPIINC@
 
-INC = $(HDFINC) ${MPIINC} -I../
+INC = $(HDFINC) ${MPIINC} -I. -I../
 
 # H5Part header file location
 H5PINC = -I@prefix@/include
@@ -42,7 +42,16 @@ lib_LIBRARIES = libH5.a
 EXTRA_LIBRARIES = libH5.a
 
 # Header files that I wish to install in $(prefix)/include
-include_HEADERS = h5.h
+include_HEADERS = \
+	h5.h \
+	h5_types.h \
+	attribs.h \
+	errorhandling.h \
+	openclose.h \
+	readwrite.h \
+	t_openclose.h \
+	t_readwrite.h \
+	u_readwrite.h 
 
 # Listing of all possible headers that I may include
 EXTRA_HEADERS =

src/h5/attribs.c

@@ -6,13 +6,10 @@
 #include <fcntl.h>
 #include <hdf5.h>
 
-#include "H5PartTypes.h"
-#include "H5BlockTypes.h"
-#include "H5Part.h"
-#include "H5Block.h"
-#include "H5PartPrivate.h"
 #include "h5.h"
 #include "h5_private.h"
+#include "H5Part.h"
+#include "H5Block.h"
 
 h5part_int64_t
 H5_read_attrib (

src/h5/errorhandling.c

@@ -6,11 +6,9 @@
 #include <fcntl.h>
 #include <hdf5.h>
 
-#include "H5PartTypes.h"
-#include "H5Part.h"
-#include "H5PartPrivate.h"
 #include "h5.h"
 #include "h5_private.h"
+#include "H5Part.h"
 
 h5_error_handler	_err_handler = H5_report_errorhandler;
 h5_int64_t		_h5part_errno = H5PART_SUCCESS;

src/h5/h5_private.h

@@ -43,4 +43,120 @@
 			"Internal error: step_gid <= 0.");
 
 
+#define H5PART_GROUPNAME_STEP	"Step"
+
+/*!
+  The functions declared here are not part of the API, but may be used
+  in extensions like H5Block. We name these functions "private".
+
+  \note
+  Private function may change there interface even in stable versions.
+  Don't use them in applications!
+*/
+
+struct _iter_op_data {
+	int stop_idx;
+	int count;
+	int type;
+	char *name;
+	size_t len;
+	char *pattern;
+};
+
+h5part_int64_t
+H5_set_step (
+	h5_file *f,
+	const h5part_int64_t step
+	);
+
+h5part_int64_t
+H5_get_num_particles (
+	h5_file *f
+	);
+
+herr_t
+H5_iteration_operator (
+	hid_t group_id,
+	const char *member_name,
+	void *operator_data
+	);
+
+
+
+#define SET_FNAME( fname )	H5_set_funcname( fname );
+
+hid_t
+H5_normalize_h5_type (
+	hid_t type
+	);
+
+h5part_int64_t
+H5_read_attrib (
+	hid_t id,
+	const char *attrib_name,
+	void *attrib_value
+	);
+
+h5part_int64_t
+H5_write_attrib (
+	hid_t id,
+	const char *attrib_name,
+	const hid_t attrib_type,
+	const void *attrib_value,
+	const hsize_t attrib_nelem
+	);
+
+h5part_int64_t
+H5_get_attrib_info (
+	hid_t id,
+	const h5part_int64_t attrib_idx,
+	char *attrib_name,
+	const h5part_int64_t len_attrib_name,
+	h5part_int64_t *attrib_type,
+	h5part_int64_t *attrib_nelem
+	);
+
+h5part_int64_t
+H5_get_num_objects (
+	hid_t group_id,
+	const char *group_name,
+	const hid_t type
+	);
+
+h5part_int64_t
+H5_get_num_objects_matching_pattern (
+	hid_t group_id,
+	const char *group_name,
+	const hid_t type,
+	char * const pattern
+	);
+
+h5part_int64_t
+_H5Part_get_object_name (
+	hid_t group_id,
+	const char *group_name,
+	const hid_t type,
+	const h5part_int64_t idx,
+	char *obj_name,
+	const h5part_int64_t len_obj_name
+	);
+
+
+char *
+_H5Part_strdupfor2c (
+	const char *s,
+	const ssize_t len
+	);
+
+char *
+_H5Part_strc2for (
+	char * const str,
+	const ssize_t l_str
+	);
+
+
+#ifdef IPL_XT3
+# define SEEK_END 2 
+#endif
+
 #endif

src/h5/h5_types.h

@@ -248,5 +248,5 @@ struct h5_file {
 };
 
 typedef struct h5_file h5_file;
-
+typedef struct h5_file H5PartFile;
 #endif

src/h5/openclose.c

@@ -7,13 +7,10 @@
 #include <fcntl.h>
 #include <hdf5.h>
 
-#include "H5PartTypes.h"
-#include "H5BlockTypes.h"
-#include "H5Part.h"
-#include "H5Block.h"
-#include "H5PartPrivate.h"
 #include "h5.h"
 #include "h5_private.h"
+#include "H5Part.h"
+#include "H5Block.h"
 
 extern h5part_error_handler	_err_handler;
 extern h5part_int64_t		_h5part_errno;

src/h5/readwrite.c

@@ -6,13 +6,10 @@
 #include <fcntl.h>
 #include <hdf5.h>
 
-#include "H5PartTypes.h"
-#include "H5BlockTypes.h"
-#include "H5Part.h"
-#include "H5Block.h"
-#include "H5PartPrivate.h"
 #include "h5.h"
 #include "h5_private.h"
+#include "H5Part.h"
+#include "H5Block.h"
 
 h5part_int64_t
 H5_write_data (

src/h5/t_openclose.c

@@ -7,12 +7,9 @@
 #include <fcntl.h>
 #include <hdf5.h>
 
-#include "H5PartTypes.h"
-#include "H5BlockTypes.h"
-#include "H5Part.h"
-#include "H5PartPrivate.h"
 #include "h5/h5.h"
 #include "h5/h5_private.h"
+#include "H5Part.h"
 
 extern h5part_error_handler	_err_handler;
 extern h5part_int64_t		_h5part_errno;

src/h5/t_readwrite.c

@@ -6,13 +6,10 @@
 #include <fcntl.h>
 #include <hdf5.h>
 
-#include "H5PartTypes.h"
-#include "H5BlockTypes.h"
-#include "H5Part.h"
-#include "H5Block.h"
-#include "H5PartPrivate.h"
 #include "h5.h"
 #include "h5_private.h"
+#include "H5Part.h"
+#include "H5Block.h"
 
 /*
   Initialize required data structures only!

src/h5/u_readwrite.c

@@ -6,10 +6,9 @@
 #include <fcntl.h>
 #include <hdf5.h>
 
-#include "H5PartTypes.h"
-#include "H5Part.h"
 #include "h5.h"
 #include "h5_private.h"
+#include "H5Part.h"
 
 extern h5part_error_handler	_err_handler;
 extern h5part_int64_t		_h5part_errno;

test/h5b/H5BlockTestAttributes.c

@@ -3,7 +3,6 @@
 #include <hdf5.h>
 #include "H5Part.h"
 #include "H5Block.h"
-#include "H5BlockTypes.h"
 #ifndef PARALLEL_IO
 #ifndef MPI_COMM_WORLD
 #define MPI_COMM_WORLD 0

test/h5b/Makefile.am

@@ -28,7 +28,7 @@ LIBS = ${H5LIB} $(HDFLIB) $(MPILIB) -lm @STDCXX@
 # INCLUDES
 HDFINC = -I$(HDF5ROOT)/include
 MPIINC = @MPIINC@
-H5INC = -I@H5P_LIB_LOC@
+H5INC = -I@H5P_LIB_LOC@ -I@H5P_LIB_LOC@/h5
 
 INC = $(HDFINC) $(MPIINC) $(H5INC)
 

test/h5t/Makefile.am

@@ -30,7 +30,7 @@ LIBS = ${H5LIB} $(HDFLIB) $(MPILIB) -lm @STDCXX@
 # INCLUDES
 HDFINC = -I$(HDF5ROOT)/include
 MPIINC = @MPIINC@
-H5INC = -I@H5P_LIB_LOC@
+H5INC = -I@H5P_LIB_LOC@ -I@H5P_LIB_LOC@/h5
 
 INC = $(HDFINC) $(MPIINC) $(H5INC)
 

test/h5u/Makefile.am

@@ -28,7 +28,7 @@ LIBS = ${H5LIB} $(HDFLIB) $(MPILIB) -lm @STDCXX@
 # INCLUDES
 HDFINC = -I$(HDF5ROOT)/include
 MPIINC = @MPIINC@
-H5INC = -I@H5P_LIB_LOC@
+H5INC = -I@H5P_LIB_LOC@ -I@H5P_LIB_LOC@/h5
 
 INC = $(HDFINC) $(MPIINC) $(H5INC)