sf-mx/crystfel_tools
0
1
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Commit Graph

  • 4140cad8f2 runs partialator and makes mtz after taking boot stapped sample master beale_j 2025-11-28 17:45:07 +01:00
  • d7fa7e25da runs make mtz after partialator beale_j 2025-11-28 17:44:05 +01:00
  • ba8d7061c5 test commit assman_g 2025-06-13 12:03:38 +02:00
  • b4fdde80c2 updated instructions at top of script Beale John Henry 2025-05-08 15:41:21 +02:00
  • 4176f5425d script to select images by resolution Beale John Henry 2025-05-08 15:38:23 +02:00
  • 16138c9212 changed script name Beale John Henry 2025-05-08 10:50:16 +02:00
  • 0c9a90f77d debugged and added all argparse Beale John Henry 2025-05-08 00:37:38 +02:00
  • 2acd84d8a9 replacement for select xtals - works very similar to stream_random Beale John Henry 2025-05-08 00:23:12 +02:00
  • 5f23127a2f removed - did not work well Beale John Henry 2025-05-08 00:22:24 +02:00
  • cb25bbcb44 selection missing is current version Beale John Henry 2025-05-07 22:23:14 +02:00
  • 5ed62f2d98 deleted a couple of conditions - still needs a bit of cleaning Beale John Henry 2025-05-07 22:22:53 +02:00
  • 66d776eaab tool from GG to make custom slpits for dual partialator runs Beale John Henry 2025-03-18 16:14:04 +01:00
  • 82c9c30abf runs stats bit as a slurm job - since bash script doesn't load modules at the moment Beale John Henry 2025-03-11 08:32:28 +01:00
  • 5e34133fa6 makes summary files and stats for a partialator run Beale John Henry 2025-03-11 08:30:23 +01:00
  • d0607a5cdc updated way to open large .stream files without crashing Beale John Henry 2025-01-26 21:44:34 +01:00
  • 3fbfa5c31f fixed state bug - added try block Beale John Henry 2025-01-26 21:32:08 +01:00
  • 6f9605d801 fixed crash bug. rewrite of .stream open. couldn't open large stream files. Beale John Henry 2025-01-25 22:35:44 +01:00
  • 8704397750 script to randomly select a given number of crystals from a stream file Beale John Henry 2025-01-25 22:34:48 +01:00
  • 19a5c91043 fixed .lst big Beale John Henry 2025-01-24 12:40:37 +01:00
  • e08ba22e2c added % indexed + and sort index column Beale John Henry 2025-01-22 15:42:57 +01:00
  • a157901927 updated residues comment Beale John Henry 2025-01-22 15:20:01 +01:00
  • b9b81e4778 fixed if run partialator bug Beale John Henry 2025-01-22 14:56:00 +01:00
  • f7c2b91630 remove useless fn Beale John Henry 2025-01-22 12:43:12 +01:00
  • 93a2dc8cef now removes '*_cut.hkl' file Beale John Henry 2025-01-22 12:38:53 +01:00
  • 6d64d9248e more bug fixes Beale John Henry 2025-01-22 12:38:25 +01:00
  • 6f16f39015 more updates now runs ok with test data Beale John Henry 2025-01-22 12:37:45 +01:00
  • fb32283c9f added lines to log file Beale John Henry 2025-01-21 16:54:49 +01:00
  • a38a9b10b1 auto processing script combining split, partialator and make_mtz. in progress Beale John Henry 2025-01-21 15:45:46 +01:00
  • ab0f8213f6 image now images Beale John Henry 2025-01-21 13:58:35 +01:00
  • ff6f20884e Merge remote-tracking branch 'refs/remotes/origin/master' Beale John Henry 2025-01-21 13:45:15 +01:00
  • 8aaa3fb24d fixed A to deg bug Beale John Henry 2025-01-21 13:43:19 +01:00
  • db017a52e1 changes names of output files Beale John Henry 2025-01-19 22:43:34 +01:00
  • 753f0665c3 fixed readlines bug Beale John Henry 2025-01-19 22:43:01 +01:00
  • 4e3f11064c Merge branch 'master' of https://gitlab.psi.ch/sf-mx/crystfel_tools Beale John Henry 2025-01-16 13:07:57 +01:00
  • 87223a5e26 copies of swissmx related tools Beale John Henry 2025-01-16 13:06:47 +01:00
  • c5868683f6 updated to be compatible with jfj/clara and old pipeline, fixed label bug - no both label, updated bool in argparse Beale John Henry 2025-01-16 11:56:42 +01:00
  • 58db2c33da updated bool in argparse Beale John Henry 2025-01-16 11:54:46 +01:00
  • 287780cc2c updated bool in argparse Beale John Henry 2025-01-16 11:54:14 +01:00
  • d5c4592ce7 upated log and print statements - now takes reservation - and changed threshold Beale John Henry 2025-01-15 02:51:48 +01:00
  • 84256080ed changed slurm default and a couple of more changes to plots Beale John Henry 2025-01-14 05:53:19 +01:00
  • 175ca597fe added wilson plot + d to second x-axis + improved log file Beale John Henry 2025-01-13 17:09:37 +01:00
  • 152e11dfea func. not check - added wilson to plot + tanh curve fits + relabelled axis Beale John Henry 2025-01-13 12:17:08 +01:00
  • 38284f77a5 added reservation to the aruguements and it also now gives sensible errors Beale John Henry 2025-01-13 10:38:13 +01:00
  • 9e3ee138b9 fixed observations bug Beale John Henry 2025-01-08 17:02:43 +01:00
  • 65408b8dd7 updated to also include truncate to create Fs and cut data resolution Beale John Henry 2025-01-08 16:58:27 +01:00
  • e93d06c242 scripts to analyse unit-cell size as a function of chip aperture Beale John Henry 2024-11-25 06:30:50 +01:00
  • 59a04abbef geom file with correct module groups for nexus script Beale John Henry 2024-02-13 16:47:57 +01:00
  • 6931ed2324 jf8m master from geom script Beale John Henry 2024-02-13 16:46:10 +01:00
  • 9ffee8ff7d now works with improved stats and does not overwrite Beale John Henry 2024-02-01 13:29:49 +01:00
  • 9b408bd2e4 Update README.md beale_j 2024-02-01 09:44:18 +01:00
  • 67ab4bd41b Update README.md beale_j 2024-02-01 09:43:15 +01:00
  • 09cfeb6c06 Update README.md beale_j 2024-02-01 09:41:20 +01:00
  • b27261127e Update README.md beale_j 2024-02-01 09:40:55 +01:00
  • 797d8b6b15 Update README.md beale_j 2024-02-01 09:39:22 +01:00
  • ec41b38ba3 Update README.md beale_j 2024-02-01 09:32:43 +01:00
  • 870d9eaa08 Update README.md beale_j 2024-02-01 09:29:03 +01:00
  • 4c5ade0f24 improved instructions Beale John Henry 2024-02-01 09:21:29 +01:00
  • 0488b99515 added bug fix for progress bar crash Beale John Henry 2024-02-01 09:10:10 +01:00
  • 88ce19d2d0 added some instructions Beale John Henry 2024-02-01 09:08:04 +01:00
  • 4724939a6c endstation added as variable + wait bug fix Beale John Henry 2024-01-31 12:19:54 +01:00
  • 0464e77288 updated with temporay crystfel version Beale John Henry 2024-01-31 11:06:17 +01:00
  • 201ead6441 updated help Beale John Henry 2024-01-31 10:58:37 +01:00
  • c1d077522f updated values with correct pixel size Beale John Henry 2024-01-31 10:58:10 +01:00
  • 4ce6bdfbb1 .lst name bug fix Beale John Henry 2024-01-31 10:33:42 +01:00
  • 6d4789d2a8 labels to graph and removal of argparse Beale John Henry 2024-01-31 10:28:12 +01:00
  • c3e3101997 makes plot with labels Beale John Henry 2024-01-31 09:25:27 +01:00
  • 3c92e69736 update - gaussian fit + dual scan Beale John Henry 2024-01-30 16:34:24 +01:00
  • a469bc9d88 fixed uc bug Beale John Henry 2024-01-19 16:22:24 +01:00
  • 9fd4432d75 bug fix for multiple crystals in chunk Beale John Henry 2023-12-10 15:50:34 +01:00
  • a597e41a5c bug fix for missing runs Beale John Henry 2023-12-10 15:27:40 +01:00
  • 8fe51dc111 fixed naming bug Beale John Henry 2023-12-10 14:40:40 +01:00
  • 4f8adce28e improved arg explaination Beale John Henry 2023-12-10 14:12:29 +01:00
  • e76be54f28 fixed unit cell bug Beale John Henry 2023-12-10 13:06:37 +01:00
  • 8b032c6921 fixed unit cell bug Beale John Henry 2023-12-10 13:06:04 +01:00
  • 06dcf5b2d0 Rsplit bu fix Beale John Henry 2023-11-06 09:24:58 +01:00
  • 20517a6924 script to selectively remove unwanted crystals from a stream file based on their unit cell lengths and angles Beale John Henry 2023-11-03 10:29:00 +01:00
  • c1b8d83e46 removed mtz make function Beale John Henry 2023-11-03 10:18:59 +01:00
  • e37f082597 script to make mtz files from .hkl outputs Beale John Henry 2023-11-03 10:14:31 +01:00
  • cc873061ba small bug fix to plot output Beale John Henry 2023-11-03 09:54:18 +01:00
  • d43dce83ce some bug fixes and updated functionality, imporved plots, now also rsplit and mutl Beale John Henry 2023-11-03 09:52:13 +01:00
  • 5a2840ee3b fixed bug in scrub cells and updated crystfel default parameters Beale John Henry 2023-11-03 08:56:57 +01:00
  • 015a8817db added nograd and changed int-radius Beale John Henry 2023-11-03 08:46:42 +01:00
  • d5368b1004 script for concatenating list files together Beale John Henry 2023-10-10 09:36:56 +02:00
  • 82e17f4bcc cleaned Beale John Henry 2023-10-10 09:27:51 +02:00
  • 9a71a59e99 some updates Beale John Henry 2023-10-10 09:25:55 +02:00
  • ae019084f2 changes to argparese for endstation and use mosflm for indexing Beale John Henry 2023-10-10 09:14:30 +02:00
  • 5e6b5160f1 bug fix, clen substitution did not take into account the beam energy might be a float. Now, the possibility is taken into account Beale John Henry 2023-10-05 09:48:39 +02:00
  • 4c264a401f Merge branch 'master' of https://gitlab.psi.ch/beale_j/crmx-tools Beale John Henry 2023-10-05 09:43:53 +02:00
  • e81a9960a0 bug fix, input change on resolution type from int to float Beale John Henry 2023-10-05 09:43:06 +02:00
  • 650175215c Merge branch 'beale_e-master-patch-63359' into 'master' beale_j 2023-09-28 21:24:07 +02:00
  • ce1e46611d bug fix - wrong CC plot file name Beale John Henry 2023-09-28 12:52:11 +02:00
  • 632e98b6d2 script to scan push-res values in partialator Beale John Henry 2023-09-28 12:37:45 +02:00
  • 065ead4884 Adding panels instead of '16' beale_e 2023-09-28 11:49:09 +02:00
  • ee52220e85 updated loguru Beale John Henry 2023-09-27 15:42:54 +02:00
  • c8918fab75 partialator script with analysis functions Beale John Henry 2023-09-27 11:21:46 +02:00
  • 4b33332bf9 now has stream_stats output and log file - loguru still needs work Beale John Henry 2023-09-27 06:48:54 +02:00
  • 7eede81cec cheeky script that spits out a bunch of info about a stream file Beale John Henry 2023-09-26 21:35:40 +02:00
  • 399b5ad03d additions and bug fixes in script Beale John Henry 2023-09-26 17:06:30 +02:00
  • 70f855bd20 gui to create correctly formated .cell files Beale John Henry 2023-09-19 11:38:12 +02:00
  • 80884c5b1f Delete hewl.cell beale_j 2023-09-19 10:41:40 +02:00