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Merlin and Ra cluster
assman_g edited this page 2024-06-23 19:22:25 +02:00

A cluster is a collection of compute nodes (CN), that have specific hardware (CPU, CPU, memory) specifications.

drawing

Hardware

Merlin

CPU-only cluster: merlin6 , merlin5 : CPU-Nodes

GPU cluster: gmerlin6 : GPU-Nodes

RA

Ra Cluster: Nodes

general info

sinfo

sinfo -M gmerlin6 -h -N

Storage on Merlin (Ra)

Personal

Merlin storage documentation: https://lsm-hpce.gitpages.psi.ch/merlin6/storage.html

Ra storage documentation: https://hpc-sysadmins.gitpages.psi.ch/ra/storage.html

Most important info:

  • /data/user/$username: 1TB , no backup
  • /psi/home/$username: 10GB , Backup

Data, Data Processing , Conda etc. should be in /data/user/$username, as it needs quite some storage, very important things that need to be backup-ed and are small go to /psi/home/$username

Group projects

Most (research) groups have a project folder with much more disk quota ("space"), BIO has a total of 2.0 PB , currently at ~ 1.9 PB. Check for the quotas (personal and group) with:

merlin_quotas

As a general rule, home and /data/user/$USER quotas are usually not changed by the admins (unless you have strong reasons), but the quota of the BIO group folders will be changed upon request by G. Assmann.

If you want to have access to a specific group folder, you can request this with a SNOW ticket. Please select the corresponding unx-bio_xxxx group. The same form is used to request access to merlin, the corresponding group would be svc-cluster_merlin6.