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2511-1.0.0-rc.102

2511-1.0.0-rc.104

2511-1.0.0-rc.105

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2511-1.0.0-rc.113

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2511-1.0.0-rc.114b

2511-1.0.0-rc.115

2511-1.0.0-rc.115c

2511-1.0.0-rc.116

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2511-1.0.0-rc.119b

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2511-eiger-mask

2511-eiger-mask-3

2511-rc.103

2511-viewer-enh

2511-viewer-enh-2

2512-1.0.0-rc.121

2512-1.0.0-rc.122

2512-scaling-merging

2601-1.0.0-rc.123

2601-1.0.0-rc.124

2601-completness

2602-residual

2602-scaling-d-limit

2603-ep

2603-multilattice

2603-pipeline-upgrades

2603-rc.129

2603-rc.130

2603-rc.131

2603-rc.131-2

2603-single-file

2604-async-start

2604-azint-mapping-parallel

2604-cuda-cleanup

2604-detector-parallel-logic

2604-hdf5-errors

2604-index-and-refine-fix

2604-more-fixes

2604-processing-options

2604-rc.135

2604-rc.136

2604-start-speed

2605-b-factor

2605-hdf-fixes

2605-hdf5-enospc

2605-hdf5-vds

2605-scaling

2605-sigma-correction

2605-speed-up-preview-start

2606-azint

2606-eiger-calib

2606-eiger-module-fix

2606-force-cpu-azint

2606-pixel-refine

2606-q-spacing

2606-rc.156-fixes

2606-sgsearch

2606-tcp

2606-viewer-processing

2606-xds-plugin

2607-rc-160

2607-res-prediction

2607-state-machine

2607-win-viewer

adaptive-spot-finding

french-wilson-model-maps

gitea-pages

main

stills-partiality-postrefine

viewer-windows

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gitea-test-10

test-docu

test-docu-2

test-docu-3

test-docu-4

test-docu-5

test-docu-6

test-docu-7

test-tag

test-tag-2

Mono Color

• abf7d5f45d frontend: visual polish pass (status pill, buttons, panels, empty states) leonarski_fandClaude Opus 4.8 2026-07-10 13:04:35 +02:00
• b474264a3f frontend: PSI logo in footer + wider, shorter settings pages leonarski_fandClaude Opus 4.8 2026-07-10 11:22:32 +02:00
• fd7e2ae6f9 image_preprocessing: treat the type-max marker as invalid for unsigned pixels leonarski_fandClaude Opus 4.8 2026-07-10 11:02:18 +02:00
• f0dc61ef58 rugnux: write refined geometry (beam, tilt, axis) to _process.h5 leonarski_fandClaude Opus 4.8 2026-07-10 08:52:18 +02:00
• 7d240a120c rugnux: recover a centred Bravais lattice from intensities (de-novo C2) leonarski_fandClaude Opus 4.8 2026-07-10 08:35:09 +02:00
• 12efbc1beb rugnux: emit non-standard mmCIF items under a "jfjoch" reserved prefix, not pdbx_ leonarski_fandClaude Opus 4.8 2026-07-10 13:01:05 +02:00
• 09c1a04786 rugnux: measure total processing time incl. scaling, not just the per-image pass leonarski_fandClaude Opus 4.8 2026-07-10 12:27:50 +02:00
• ca5ac9f838 Name the Windows NSIS installer jfjoch-viewer-*, not jfjoch-* leonarski_fandClaude Opus 4.8 2026-07-10 07:26:10 +02:00
• a4cc908ff1 rugnux: run the L-test on rhombohedral data + write twinning stats to CIF leonarski_fandClaude Opus 4.8 2026-07-09 21:59:37 +02:00
• 8c288c8697 rugnux: recover genuine high symmetry in de-novo space-group search leonarski_fandClaude Opus 4.8 2026-07-09 21:14:18 +02:00
• 4f3153d6c7 rugnux: automatic CC1/2-logistic high-resolution cutoff leonarski_fandClaude Opus 4.8 2026-07-09 17:34:49 +02:00
• 4df811bf73 Remove rugnux work-in-progress documents from Git leonarski_f 2026-07-09 16:18:08 +02:00
• be937d0163 docs: rugnux automatic resolution-cutoff design (CC1/2 logistic, one shell too far) leonarski_fandClaude Fable 5 2026-07-09 15:44:40 +02:00
• c0f6522778 docs: rugnux de-novo symmetry/indexing investigation notes leonarski_fandClaude Fable 5 2026-07-09 15:42:28 +02:00
• ad73b4af99 writer: detect overwrite conflict at start for back-channel transports leonarski_fandClaude Fable 5 2026-07-09 15:16:34 +02:00
• 36be60774f image_pusher: reset writer when EndDataCollection finalization fails leonarski_fandClaude Fable 5 2026-07-09 14:43:42 +02:00
• ec05a6c4d6 Viewer: coral secondary-lattice spots, ring arcs, legend, ROI swatches, save JPEG leonarski_fandClaude Fable 5 2026-07-09 12:04:12 +02:00
• a4559e576d Preview: geometry-following arcs, true beam center, unified colours, predictions leonarski_fandClaude Fable 5 2026-07-09 12:04:00 +02:00
• 03dad9fe93 image_analysis: remove dead RotationParameters; receiver opts out of retain_outcomes leonarski_fandClaude Fable 5 2026-07-09 11:28:16 +02:00
• b2f0af12db image_analysis: add retain_outcomes flag to IndexAndRefine; viewer opts out leonarski_fandClaude Fable 5 2026-07-09 11:02:10 +02:00
• dc8a80f3e0 viewer: fix HTTP live-follow OOM via datasetLoaded backpressure + shared pixel mask leonarski_fandClaude Fable 5 2026-07-09 10:58:10 +02:00
• b4a29ebb32 Update grid scan_result test for dropped placeholder rows leonarski_fandClaude Fable 5 2026-07-09 09:44:21 +02:00
• c6af375dc0 CHANGELOG: move branch changes from rc.156 to a new rc.157 section leonarski_fandClaude Fable 5 2026-07-08 20:43:44 +02:00
• 1b5ffb4337 VERSION: 1.0.0-rc.157 leonarski_f 2026-07-08 20:29:08 +02:00
• 023a30cb08 Drop uncollected placeholder rows from scan_result leonarski_fandClaude Opus 4.8 2026-07-08 20:25:20 +02:00
• 4055e94b7d Fix inverted per-image compression ratio in Lite receiver leonarski_fandClaude Fable 5 2026-07-08 15:48:01 +02:00
• 51bfdd2b35 Fix acquisition error-handling and rugnux CLI issues from branch review leonarski_fandClaude Fable 5 2026-07-08 15:48:01 +02:00
• 77e53ac714 Fix exception handling in acquisition failure paths leonarski_fandClaude Fable 5 2026-07-08 14:36:25 +02:00
• 01e4f81e44 Consolidate offline tools into rugnux; merge on by default leonarski_fandClaude Fable 5 2026-07-08 14:09:15 +02:00
• 1caa57744a Rebrand offline processing as rugnux (jfjoch_process -> rugnux) leonarski_fandClaude Opus 4.8 2026-07-07 22:46:58 +02:00
• 0a28da7c2e Acquisition errors return to Idle instead of Error state leonarski_fandClaude Opus 4.8 2026-07-07 14:10:48 +02:00
• d6389e12da v1.0.0-rc.156 (#66) 1.0.0-rc.156 leonarski_f 2026-07-03 19:18:56 +02:00
• 3c03028fd8 fix(cpack): package viewer-only TGZ by component, build its CLI tools in CI 2606-rc.156-fixes leonarski_fandClaude Fable 5 2026-07-03 17:18:04 +02:00
• 2f91af7352 test: gate DisconnectMidWrite test on writer connection to fix race leonarski_fandClaude Fable 5 2026-07-03 17:11:46 +02:00
• db27b63ccc merge: floor merged sigma at the systematic error so ISa is the I/sigma ceiling leonarski_fandClaude Opus 4.8 2026-07-03 16:54:04 +02:00
• b846e60e0d docs: record rc.156 changes since the last changelog update leonarski_fandClaude Opus 4.8 2026-07-03 16:13:50 +02:00
• 6df657fe62 SG search: gate the systematic-absence test on intensity, not just I/sigma leonarski_fandClaude Opus 4.8 2026-07-03 15:18:27 +02:00
• 2853cba3f0 Fix detector settings widget leonarski_f 2026-07-03 15:10:09 +02:00
• bff5c99cda Writer: don't write empty grid-scan position arrays when max_image_number == 0 leonarski_fandClaude Fable 5 2026-07-03 15:03:36 +02:00
• 4cda46c6b0 Wire BraggIntegrationEngine into the pipeline; deterministic prediction; integration_model API leonarski_fandClaude Opus 4.8 2026-07-03 14:35:20 +02:00
• b8e0f3dbd9 Frontend: use a wind-power icon for the Streaming nav entry leonarski_fandClaude Fable 5 2026-07-03 13:56:44 +02:00
• 1d328f40c7 Frontend: use a switch-camera icon for the Detector selection nav entry leonarski_fandClaude Fable 5 2026-07-03 13:52:50 +02:00
• 5d913d1d59 Frontend: use a camera icon for the Detector nav entry leonarski_fandClaude Fable 5 2026-07-03 13:51:09 +02:00
• 32c9e18950 Frontend: fix panels/preview overflow and Count time alignment leonarski_fandClaude Fable 5 2026-07-03 13:44:45 +02:00
• 03b5d906e8 CI: ship jfjoch_viewer to release as a Linux-agnostic .tgz leonarski_fandClaude Fable 5 2026-07-03 13:10:42 +02:00
• 7d5fb15413 Unify still processing on one --force-still flag; scaling follows rotation indexing leonarski_fandClaude Opus 4.8 2026-07-03 12:20:45 +02:00
• b4d3d40cd8 Replace the dead PartialityModel with a force_still_processing flag leonarski_fandClaude Opus 4.8 2026-07-03 11:58:34 +02:00
• 9f45935fd3 Scale/merge: rotation -> RotationScaleMerge, stills -> ScaleOnTheFly (fixed) leonarski_fandClaude Opus 4.8 2026-07-03 11:41:49 +02:00
• fccf9b83e7 RotationScaleMerge: drop profiling + env gates, honour forced mosaicity leonarski_fandClaude Opus 4.8 2026-07-03 11:41:31 +02:00
• 34b3c3c4e7 RotationScaleMerge: GPU merge + error-model reductions over the resident fulls leonarski_fandClaude Opus 4.8 2026-07-03 10:38:36 +02:00
• 786edf9929 RotationScaleMerge: GPU smooth-G, corr kept resident across the pass leonarski_fandClaude Opus 4.8 2026-07-03 09:49:31 +02:00
• 87c70195f8 RotationScaleMerge: faster group-hkl via flat group ids + skip Obs stamp leonarski_fandClaude Opus 4.8 2026-07-03 09:25:31 +02:00
• 7d804eb799 RotationScaleMerge: GPU post-smooth group means + per-frame CC leonarski_fandClaude Opus 4.8 2026-07-03 08:58:26 +02:00
• 617184041f RotationScaleMerge: enable GPU combine + scale-fulls by default leonarski_fandClaude Opus 4.8 2026-07-03 08:35:23 +02:00
• ced85bcd9d RotationScaleMerge: GPU scale-fulls, fulls kept resident (phase 2 step 2) leonarski_fandClaude Opus 4.8 2026-07-03 07:51:29 +02:00
• 2c928b27cd RotationScaleMerge: GPU 3D-combine (CUDA port, phase 2 step 1) leonarski_fandClaude Opus 4.8 2026-07-03 07:27:33 +02:00
• dd25de461d RotationScaleMerge: GPU partial-scaling loop (CUDA port, phase 1) leonarski_fandClaude Opus 4.8 2026-07-02 22:26:29 +02:00
• 29c8ba6112 rotation: deterministic frame-order mosaicity smoothing + partiality recompute leonarski_fandClaude Opus 4.8 2026-07-02 21:58:10 +02:00
• b5d9167bf4 RotationScaleMerge: chunked parallelism -> scale/merge phase ~2s leonarski_fandClaude Opus 4.8 2026-07-02 21:31:41 +02:00
• 29c5410328 rotation scaling: dedicated allocate-once RotationScaleMerge, ~3.4x faster scale/merge leonarski_fandClaude Opus 4.8 2026-07-02 20:58:07 +02:00
• 711216e116 scan_result: short "ice" field + global Bravais lattice type leonarski_fandClaude Opus 4.8 2026-07-02 18:56:58 +02:00
• ddddfb6ffc bragg_integration: GPU box + profile-fit integrator (standalone engine) leonarski_fandClaude Opus 4.8 2026-07-02 20:59:45 +02:00
• 347228d008 jfjoch_process: azimuthal-integration CLI + default 0.01 1/A q-spacing leonarski_fandClaude Fable 5 2026-07-02 17:24:05 +02:00
• 5737d2e1d0 ice score: measure against a smooth whole-profile background, not shoulders leonarski_fandClaude Fable 5 2026-07-02 17:05:39 +02:00
• 65c7eb6366 docs: complete the per-image-quantity recipe with the HDF5 read-back path leonarski_fandClaude Fable 5 2026-07-02 16:43:02 +02:00
• 0399d1799d ice score: read back from stored HDF5 (viewer) + write to the NXmx master leonarski_fandClaude Fable 5 2026-07-02 16:42:17 +02:00
• f422988cd2 ice score: per-image ice-ring indicator plumbed through all layers leonarski_fandClaude Fable 5 2026-07-02 16:37:12 +02:00
• 6ffb16f142 merge: mask ice rings whose CC1/2 collapses below their resolution neighbours leonarski_fandClaude Fable 5 2026-07-02 16:06:39 +02:00
• cdbd0bed5d partiality: fix the rotation-prediction wedge, use the stored value in scaling leonarski_fandClaude Fable 5 2026-07-02 14:57:16 +02:00
• 8c084021e6 ice rings: exclude from scaling, keep in the final merge (recover completeness) leonarski_fandClaude Fable 5 2026-07-02 14:29:37 +02:00
• 1ca5a69054 ScaleOnTheFly: solve the per-image scale by IRLS instead of Ceres leonarski_fandClaude Fable 5 2026-07-02 13:55:04 +02:00
• 5c9175688a jfjoch_process: let --detect-ice-rings=on|off override the dataset leonarski_fandClaude Fable 5 2026-07-02 13:18:09 +02:00
• ed9f6ac9eb integration: remove --reciprocal-profile (proven per-frame dead-end) leonarski_fandClaude Opus 4.8 2026-07-02 11:39:09 +02:00
• 7e3ad84a5b jfjoch_process/scale: default to mmCIF, auto-detect rotation, rot3d partiality leonarski_fandClaude Fable 5 2026-07-02 08:34:50 +02:00
• 4b393082d4 ci: drop requests dependency and use PowerShell for the Windows release upload leonarski_fandClaude Opus 4.8 2026-07-01 21:51:54 +02:00
• ae1ea41151 ci: matrix the Windows build and upload installers to the release on tag leonarski_fandClaude Opus 4.8 2026-07-01 21:47:01 +02:00
• 48a7a67283 docs: publish third-party notices as a documentation page leonarski_fandClaude Opus 4.8 2026-07-01 21:42:22 +02:00
• ec904bc21d Remove Gitlab remains leonarski_f 2026-07-01 21:36:36 +02:00
• 91cae946a9 VERSION: 1.0.0-rc.156 leonarski_f 2026-07-01 21:33:37 +02:00
• 0f327e4550 docs: add rc.156 changelog entry leonarski_fandClaude Opus 4.8 2026-07-01 21:32:51 +02:00
• fa121f0079 jfjoch_viewer: show "Multiple lattices detected" in image statistics leonarski_fandClaude Opus 4.8 2026-07-01 21:30:10 +02:00
• 00821e32ef rotation indexer: refine candidate cells and pick the best after refinement leonarski_fandClaude Opus 4.8 2026-07-01 21:05:22 +02:00
• dfc6703f4a jfjoch_process: don't double-smooth per-frame G on the reference path leonarski_fandClaude Opus 4.8 2026-07-01 14:24:05 +02:00
• ab2176960f OpenAPI: Fix smargon descriptions leonarski_f 2026-07-01 14:12:09 +02:00
• c67ea2fa42 receiver: guard size_t underflow in compression buffer sizing leonarski_fandClaude Opus 4.8 2026-07-01 14:05:20 +02:00
• b7613c559c smargon: write chi/phi goniometer position into NXmx transformations leonarski_fandClaude Opus 4.8 2026-07-01 11:45:08 +02:00
• 35607057d9 CC1/2 merge: assign half-sets by deterministic per-image hash leonarski_fandClaude Opus 4.8 2026-07-01 07:25:34 +02:00
• a773aaa6a9 WriteReflections: write merging statistics + ISa to the mmCIF output leonarski_fandClaude Opus 4.8 2026-06-30 22:29:45 +02:00
• ff91ca5e3a jfjoch_process: default --reject-outliers 6 for rot3d (XDS-like) leonarski_fandClaude Opus 4.8 2026-06-30 22:04:36 +02:00
• 636ed1e180 space group: use merge reduced chi^2 (not R-meas) for the consistency check leonarski_fandClaude Opus 4.8 2026-06-30 21:54:51 +02:00
• fea2790a41 rotation_indexer: detect hexagonal metric de-novo (fixes trigonal cytC indexing) leonarski_fandClaude Opus 4.8 2026-06-30 21:31:20 +02:00
• 52248b8f5c docs: design for auto-gated, data-driven ice-ring detection leonarski_fandClaude Opus 4.8 2026-06-30 21:22:31 +02:00
• f3c51b0266 jfjoch_process: --min-image-cc is in percent, not a fraction (fix crash) leonarski_fandClaude Opus 4.8 2026-06-30 21:09:18 +02:00
• 73d9e1de39 ice rings: widen the exclusion band to 0.03 q (measured ring FWHM) leonarski_fandClaude Opus 4.8 2026-06-30 21:09:18 +02:00
• a74b8767de ice rings: add --detect-ice-rings and exclude ice-ring reflections from scaling leonarski_fandClaude Opus 4.8 2026-06-30 20:40:51 +02:00
• 7ade6d9906 space group: reject over-symmetrised point groups by merge R-meas consistency leonarski_fandClaude Opus 4.8 2026-06-30 20:32:03 +02:00
• 23d58b6202 integration: robust, well-conditioned per-frame --reciprocal-profile fit leonarski_fandClaude Opus 4.8 2026-06-30 20:01:05 +02:00
• 0783af247c scaling: express rot3d smooth-g as a rotation range in degrees (XDS DELPHI-like) leonarski_fandClaude Opus 4.8 2026-06-30 20:00:53 +02:00
• 8d18c635ff scaling: robust (Cauchy) loss on the per-image scale fit leonarski_fandClaude Opus 4.8 2026-06-30 20:00:42 +02:00
• e45a1577d6 jfjoch_process: optional absorption surface for rot3d scaling (--absorption) leonarski_fandClaude Opus 4.8 2026-06-30 15:23:01 +02:00