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Mono Color

• 1a970eef91 docs: regenerate THIRD_PARTY_NOTICES.md (Mbed TLS replaces curl, XDS plugin note) xds-plugin-license leonarski_fandClaude Opus 5.5 2026-10-07 21:21:18 +02:00
• 89207fe2bd viewer: cpp-httplib + Mbed TLS instead of libcurl for the broker client leonarski_fandClaude Opus 5.5 2026-10-07 20:37:27 +02:00
• 36366295f2 Windows: viewer installer and rugnux zip from one build leonarski_fandClaude Opus 5.5 2026-10-07 21:04:17 +02:00
• e7f21ec0fe viewer: cpp-httplib + Mbed TLS instead of libcurl for the broker client viewer-httplib-mbedtls leonarski_fandClaude Opus 5.5 2026-10-07 20:37:27 +02:00
• 07ae3c3a40 XDS plugin: GPL linking permission, own tgz with its notices, macOS build; one portable CI build leonarski_fandClaude Opus 5.5 2026-10-07 20:29:19 +02:00
• f97700e084 battery: read 8owm and 8rud as the deposited .cbf.gz; 6ZR0's zip is intact leonarski_fandClaude Opus 5.5 2026-10-07 19:59:40 +02:00
• 016430c0a1 rugnux: TIMING marks for the space-group decisions between the arms and the adopted merge leonarski_fandClaude Opus 5.5 2026-10-07 17:57:11 +02:00
• 1227d4168f rugnux: drop the P1 cross-check; --finalist-ledger makes its own P1 merge leonarski_fandClaude Opus 5.5 2026-10-07 17:57:09 +02:00
• f3c3ea5d3c battery: add 2ygz to the open arm leonarski_fandClaude Opus 5.5 2026-10-07 17:09:05 +02:00
• 5421c569ed rugnux: log the time of each section of the run's tail at debug level leonarski_fandClaude Opus 5.5 2026-10-07 16:13:17 +02:00
• df44edf9ee rugnux: gather the scaffold's shared helpers into one rugnux_internal block leonarski_fandClaude Opus 5.5 2026-10-07 16:01:03 +02:00
• 7b7002d8e3 rugnux: move scaling, merging and the space-group search to RugnuxScaleMerge.cpp leonarski_fandClaude Opus 5.5 2026-10-07 16:00:26 +02:00
• 64baec81e0 rugnux: move the first-pass rotation indexing to RugnuxFirstPass.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:57:02 +02:00
• 7bcdf2a081 rugnux: move the image pass to RugnuxImagePass.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:54:58 +02:00
• 2e0a3bb255 rugnux: move RunAllPasses and the pass arbitration to RugnuxPasses.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:48:43 +02:00
• a341c86b43 rugnux: move PreScan and MaskDefectivePixels to RugnuxPreScan.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:46:52 +02:00
• a4f727d5f9 rugnux: move the powder-calibration fit to RugnuxCalibration.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:44:00 +02:00
• df90848bcd rugnux: move RefineStillsGeometry to RugnuxStills.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:40:27 +02:00
• 9d0fc1dd52 rugnux: add RugnuxPipeline.h, the private header the Rugnux.cpp split shares leonarski_fandClaude Opus 5.5 2026-10-07 15:38:49 +02:00
• 570b8ac31c 1.0.0-rc.175 rc175 leonarski_fandClaude Opus 5.5 2026-10-07 14:14:39 +02:00
• 0c1c963379 Move SpotWidth to bragg_integration/, SpindleCuspLoss and LeftoverLattices to indexing/ leonarski_fandClaude Opus 5.5 2026-10-07 14:04:51 +02:00
• 9ad92b6bfe Move the atomic-model code to image_analysis/structure_refinement/ and WriteModel to writer/ leonarski_fandClaude Opus 5.5 2026-10-07 13:58:20 +02:00
• 08ca1d5764 Move the hot-pixel finder from rugnux/ to image_analysis/hot_pixels/ leonarski_fandClaude Opus 5.5 2026-10-07 13:57:25 +02:00
• e6bbfea4c4 Indexing: a coplanar cell leaves the frame unindexed instead of throwing leonarski_fandClaude Opus 5.5 2026-10-07 13:40:41 +02:00
• 280ff0a4a0 rugnux: remove --estimate-beam-center and the spot-symmetry beam-centre estimator leonarski_fandClaude Opus 5.5 2026-10-07 11:26:12 +02:00
• 082f77eaa8 rugnux: remove the beam-centre ladder (--beam-center-search) leonarski_fandClaude Opus 5.5 2026-10-07 11:05:00 +02:00
• 8c7c222e7d rugnux: the two-pass geometry pre-pass integrates the first half of the sweep by default leonarski_fandClaude Opus 5.5 2026-10-07 11:01:11 +02:00
• 01a4e95041 Two-pass: a partial pre-pass is a sweep of the frames it read, and the guard compares those frames leonarski_fandClaude Opus 5.5 2026-10-07 11:00:25 +02:00
• ed2e0ffadf rugnux: drop the Innosuisse line from the banner leonarski_fandClaude Opus 5.5 2026-10-07 10:37:40 +02:00
• 37b7fdd38d rugnux: the terminal shows numbered steps with timing; the full log goes to <prefix>_log.txt leonarski_fandClaude Opus 5.5 2026-10-07 09:55:44 +02:00
• 91bfb4ae51 Logger: route every logger to one sink; buffered lines keep their own time leonarski_fandClaude Opus 5.5 2026-10-07 09:55:44 +02:00
• 5282dd6199 RotationScaleMerge::RunArm: free the fulls before growing them leonarski_fandClaude Opus 5.5 2026-10-07 11:58:39 +02:00
• 1907f47368 SearchSpaceGroup: per-reflection work on all threads, every sum still serial in the old order leonarski_fandClaude Opus 5.5 2026-10-07 11:58:39 +02:00
• a7a60eb128 jfjoch_viewer: FFT frequency axis 1000x too low leonarski_fandClaude Opus 5.5 2026-10-07 11:14:32 +02:00
• c8e2e6ef56 RotationScaleMerge (tier F): decay / relative-B / radiation-damage sums over the fulls in fixed blocks leonarski_fandClaude Opus 5.5 2026-10-07 01:09:14 +02:00
• ea8132ceca RotationScaleMerge: with the GPU resident, build the per-space-group grouping on the device leonarski_fandClaude Opus 5.5 2026-10-07 01:08:50 +02:00
• 70859bcb60 WilsonOutliers: judged list, per-reflection verdicts and both sorts on all threads leonarski_fandClaude Opus 5.5 2026-10-07 01:08:12 +02:00
• 1f5c63f13c R-free flags: none on a space-group search merge; the assignment on all threads leonarski_fandClaude Opus 5.5 2026-10-07 01:08:12 +02:00
• 437f8729fe RotationScaleMerge: MergeAndStats walks over a group CSR of the fulls, on all threads leonarski_fandClaude Opus 5.5 2026-10-07 01:07:48 +02:00
• 801faa797c --prepass-fraction: the geometry pre-pass image loop on the first part of the sweep only leonarski_fandClaude Opus 5.5 2026-10-07 06:30:20 +02:00
• 9b9c5118c5 Beam-centre ladder: screen each rung on the starting spots, re-find spots only to adopt leonarski_fandClaude Opus 5.5 2026-10-07 00:48:29 +02:00
• 0f9f3ac73c Beam-centre ladder: each trial centre fed, indexed and scored in one go leonarski_fandClaude Opus 5.5 2026-10-06 23:10:26 +02:00
• 76b3956e11 French-Wilson once, on the written merge; none for the P1 cross-check leonarski_fandClaude Opus 5.5 2026-10-06 23:10:26 +02:00
• fc61700c95 Azimuthal geometry cache keeps six geometries instead of one leonarski_fandClaude Opus 5.5 2026-10-06 23:10:07 +02:00
• cf145bcb3e Deploy site gitea-pages leonarski_f 2026-10-06 20:38:39 +00:00
• a395f358ef 1.0.0-rc.174 (#84) main 1.0.0-rc.174 leonarski_f 2026-10-06 14:03:18 +02:00
• 7ad34fc659 Docs: battery report of release 1.0.0-rc.174, with commentary and figures rc174 leonarski_fandClaude Opus 5.5 2026-10-06 08:00:09 +02:00
• ee86aa4bfe Battery: the time figures can count more arms, and a second one zooms on the first 60 s leonarski_fandClaude Opus 5.5 2026-10-06 08:00:09 +02:00
• 3770f42c90 Merge branch 'perf-scale-c1' into rc174 leonarski_f 2026-10-05 20:10:28 +02:00
• 9c72235783 Docs: rewrite the beam-centre section from the code leonarski_fandClaude Opus 5.5 2026-10-05 16:51:35 +02:00
• dfb7f119af Acknowledgement: d*TREK SMV reader credits Pflugrath (1999) and dxtbx leonarski_fandClaude Opus 5.5 2026-10-05 16:42:57 +02:00
• d9f3b32d46 Docs: overloaded rocking events are in neither the unmerged MTZ nor the .hkl leonarski_fandClaude Opus 5.5 2026-10-05 16:38:35 +02:00
• 5ee839b271 Docs: the viewer's merge window - subscripted space group and the pathology checklist leonarski_fandClaude Opus 5.5 2026-10-05 16:37:05 +02:00
• 989b3cdc5d Docs: jfjoch_viewer opens marCCD and SMV sweeps as well as miniCBF leonarski_fandClaude Opus 5.5 2026-10-05 16:36:49 +02:00
• e9833936bc Docs: README names rugnux; install page on the GPU pre-scan and flag-independent results leonarski_fandClaude Opus 5.5 2026-10-05 16:36:29 +02:00
• ea9e926d20 Battery README: KDP among the in-house small-molecule standards leonarski_fandClaude Opus 5.5 2026-10-05 16:35:46 +02:00
• b7a440bcbd Docs: verified DOIs for Wilson (1949) and Whittaker; centre-of-symmetry references leonarski_fandClaude Opus 5.5 2026-10-05 16:34:59 +02:00
• e2084895db Docs: data-analysis reference brought up to the rc.174 behaviour leonarski_fandClaude Opus 5.5 2026-10-05 16:34:31 +02:00
• 7f29215e71 rugnux: make the P1 cross-check merge beside the tail after the final merge leonarski_fandClaude Opus 5.5 2026-10-05 16:32:47 +02:00
• 420d5d5844 Rotation scaling: sort the outlier band's spread on all threads leonarski_fandClaude Opus 5.5 2026-10-05 15:15:01 +02:00
• 17f3c48cfc Rotation scaling: sort the ASU keys on all threads leonarski_fandClaude Opus 5.5 2026-10-05 15:14:50 +02:00
• fc358720ed Rotation scaling: skip the fulls-alone merge when the partials' merge decides leonarski_fandClaude Opus 5.5 2026-10-05 14:45:42 +02:00
• e7c4cb128c Docs: results report - rejection counters, every CENTRE_STATISTICS key, build flags leonarski_fandClaude Opus 5.5 2026-10-05 16:32:36 +02:00
• 39abdb9f58 Docs: processing small-molecule data, and taking it into SHELXT / SHELXL leonarski_fandClaude Opus 5.5 2026-10-05 16:32:10 +02:00
• d80579221b Docs: Rigaku d*TREK SMV headers; SMV saturation is read where stated leonarski_fandClaude Opus 5.5 2026-10-05 16:29:41 +02:00
• db7cd6282e Docs: repair sigma_rho / sigma_tau in the spot-footprint paragraph leonarski_fandClaude Opus 5.5 2026-10-05 16:23:41 +02:00
• 09ba6d7225 CHANGELOG: rc.174 Rugnux entries most important first; SMV reader with the home-source battery sets leonarski_fandClaude Opus 5.5 2026-10-05 16:21:52 +02:00
• e5e93893b6 CLAUDE.md: changelog entries are written only on the maintainer's request, once per branch leonarski_fandClaude Opus 5.5 2026-10-05 16:21:52 +02:00
• ca8eff396a CHANGELOG: rc.174 release notes leonarski_fandClaude Opus 5.5 2026-10-05 16:15:28 +02:00
• aa4455b18e Merge branch 'rc174-all3' into rc174 leonarski_f 2026-10-05 14:51:27 +02:00
• aeae9adb27 Docker: build Qt without JPEG and TIFF support leonarski_fandClaude Opus 5.5 2026-10-05 12:47:55 +02:00
• 9459444b6a Viewer: link one libjpeg - drop Qt's JPEG and TIFF plugins leonarski_fandClaude Opus 5.5 2026-10-05 12:47:55 +02:00
• 379a24393e Merge branch 'dq-reg1' into rc174-all3 leonarski_f 2026-10-05 10:22:27 +02:00
• 51e612b54b Merge branch 'battery-cytc-model' into rc174-all3 leonarski_f 2026-10-05 10:15:26 +02:00
• 9d1650680e Battery report: 8xtg's twin-immune zone is now read at the other twin laws' fraction leonarski_fandClaude Opus 5.5 2026-10-05 10:15:04 +02:00
• 3167b4ce14 Merge branch 'battery-inhouse-model' into rc174-all3 leonarski_f 2026-10-05 10:14:54 +02:00
• 0741b2b298 Merge branch 'dq-reg4' into rc174-all3 leonarski_f 2026-10-05 10:14:47 +02:00
• 0d31d60f3e Battery: cytochrome C sets are scored against our own reference model leonarski_fandClaude Opus 5.5 2026-10-05 10:14:46 +02:00
• 5575558c5f Merge branch 'dq-reg3' into rc174-all3 leonarski_f 2026-10-05 10:14:40 +02:00
• 537544e958 Merge branch 'dq-reg2' into rc174-all3 leonarski_f 2026-10-05 10:14:40 +02:00
• f9ffc3d837 SearchSpaceGroup: ask a promotion's twin-immune zone on a twinned merge, read at the other twin laws' fraction leonarski_fandClaude Opus 5.5 2026-10-05 10:13:50 +02:00
• 636c6a3067 SearchSpaceGroup: operator-homogeneity gate reads the R gap between a subgroup and the rest leonarski_fandClaude Opus 5.5 2026-10-05 09:28:32 +02:00
• a628f06868 Space-group search: an ask that promotes over a twin-gate refusal is decided by the twin-immune zone leonarski_fandClaude Opus 5.5 2026-10-05 09:06:16 +02:00
• 442cf8889d Battery: in-house standard proteins carry a reference model for R-free and anomalous signal leonarski_fandClaude Opus 5.5 2026-10-05 08:47:21 +02:00
• 7eb8e93a0a Rugnux --model: report the anomalous map's mean height at the model's anomalous scatterers leonarski_fandClaude Opus 5.5 2026-10-05 07:56:32 +02:00
• 94cc5d7267 Anisotropy: a cubic result carries a principal frame, so its French-Wilson tensor is zero, not NaN leonarski_fandClaude Opus 5.5 2026-10-05 07:03:45 +02:00
• 2624a69726 Merge branch 'battery-myob-ref' into rc174-all2 leonarski_fandClaude Opus 5.5 2026-10-05 06:50:45 +02:00
• 0348462521 Battery: myoglobin in-house sets are scored against P 1 21 1 leonarski_fandClaude Opus 5.5 2026-10-05 06:50:45 +02:00
• f64f764d40 Merge branch 'dq-kdp-int' into rc174-all2 leonarski_fandClaude Opus 5.5 2026-10-04 23:49:16 +02:00
• 0e35cad1e2 Docs: split reflections in the measured footprint leonarski_fandClaude Opus 5.5 2026-10-04 23:32:29 +02:00
• 9223c27c1b Merge branch 'dq-sym-glide' into rc174-all2 leonarski_f 2026-10-04 23:29:11 +02:00
• 98f678ae89 Merge branch 'dq-sm2-rest' into rc174-all2 leonarski_fandClaude Opus 5.5 2026-10-04 23:29:07 +02:00
• 01c7d4636b Merge branch 'dq-sm2-int' into rc174-all2 leonarski_fandClaude Opus 5.5 2026-10-04 23:29:07 +02:00
• 6f42ca518f Merge branch 'dq-sm2-scale-band' into rc174-all2 leonarski_fandClaude Opus 5.5 2026-10-04 23:29:07 +02:00
• 60b7fb86fa SearchSpaceGroup: glide groups without a centre of symmetry; the centre decided by absences, a default, or the intensity distribution leonarski_fandClaude Opus 5.5 2026-10-04 21:42:39 +02:00
• fb9d4992bd Integration: the spot footprint includes how far the spots sit from their predicted reflections leonarski_fandClaude Opus 5.5 2026-10-04 22:48:04 +02:00
• 11199596b4 Merge branch 'battery-kdp' into dq-kdp-int leonarski_f 2026-10-04 21:27:20 +02:00
• 4ec197c68c Rotation merge: outlier band's multiplicative spread measured, not taken from b leonarski_fandClaude Opus 5.5 2026-10-04 20:51:01 +02:00
• a012a0b5cb Rotation merge: outlier band multiplicative in the error model's b term leonarski_fandClaude Opus 5.5 2026-10-04 18:34:52 +02:00
• b126b9fc15 Rotation merge: scale from the fulls alone only where that leaves an error model leonarski_fandClaude Opus 5.5 2026-10-04 21:03:02 +02:00