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2511-viewer-enh

2511-viewer-enh-2

2512-1.0.0-rc.121

2512-1.0.0-rc.122

2512-scaling-merging

2601-1.0.0-rc.123

2601-1.0.0-rc.124

2601-completness

2602-residual

2602-scaling-d-limit

gitea-pages

main

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gitea-test-10

test-docu

test-docu-2

test-docu-3

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Mono Color

• 5527fd0aa2 IndexAndRefine: For the moment - symmetry is enforced only if space group and unit cell are both provided 2602-scaling-d-limit leonarski_f 2026-02-20 18:15:17 +01:00
• 745755184a ScaleAndMerge: Split code into functions Filip Leonarski 2026-02-20 15:27:28 +01:00
• 6eeb9c0449 jfjoch_viewer: Read image scale factor Filip Leonarski 2026-02-20 15:08:40 +01:00
• b5a7ae14ff jfjoch_tests: Fix ordering of unit cell of lysozyme Filip Leonarski 2026-02-20 14:12:22 +01:00
• ff6e02046a ScaleAndMerge: Fix still case (though it doesn't really work at the moment) Filip Leonarski 2026-02-20 13:40:51 +01:00
• c33366f3d6 IndexAndRefine: Use mosaicity from indexing for scaling Filip Leonarski 2026-02-20 13:18:16 +01:00
• 203eefca66 jfjoch_process: Save scale factors Filip Leonarski 2026-02-20 11:48:34 +01:00
• 3819fe5a86 ScaleAndMerge: add option to cluster images for refinement (faster convergence, but pays price in quality) Filip Leonarski 2026-02-20 11:47:01 +01:00
• e6e0f5b2f0 ScaleAndMerge: clean-up (no log residual, no fixed mosaicity, return per-image values) Filip Leonarski 2026-02-20 11:37:59 +01:00
• 43c3402198 ScaleMerge: Simplify by removing log residual Filip Leonarski 2026-02-20 09:28:50 +01:00
• eefea7f36b XtalOptimizer: Don't regularize lattices at input, as this can give problems to downstream procedures. We assume that SearchLattice gave reasonable response. Need to better handle this in the future. Filip Leonarski 2026-02-20 09:23:34 +01:00
• 89d827a24f jfjoch_process: Add resolution limit Filip Leonarski 2026-02-19 10:29:38 +01:00
• 67b6096481 Deploy site gitea-pages Filip Leonarski (Gitea) 2026-02-19 06:49:28 +00:00
• 32b681e591 v1.0.0-rc.126 (#33) main 1.0.0-rc.126 Filip Leonarski 2026-02-19 07:01:38 +01:00
• b78ee35569 XtalOptimizer: Have one function to rebuild lattice from three arrays 2602-residual Filip Leonarski 2026-02-18 22:30:59 +01:00
• 50ec0fa1c7 XtalOptimizerTest: Check distance refinement Filip Leonarski 2026-02-18 22:14:33 +01:00
• 298ce8fd8e CHANGELOG Filip Leonarski 2026-02-18 22:07:15 +01:00
• b4d22f0030 VERSION: 1.0.0-rc.126 Filip Leonarski 2026-02-18 22:06:06 +01:00
• c6183f2e01 XtalOptimizer: Extend test a bit Filip Leonarski 2026-02-18 22:02:58 +01:00
• 5cfd8bcc13 XtalOptimizer: Fix error Filip Leonarski 2026-02-18 21:17:19 +01:00
• 7634cd819a XtalOptimizer: Fix how monoclinic is generated Filip Leonarski 2026-02-18 20:44:58 +01:00
• f05c1977f9 jfjoch_process: output lattice vectors Filip Leonarski 2026-02-18 20:10:48 +01:00
• 32b456135f XtalOptimizer: Improve performance Filip Leonarski 2026-02-18 20:01:52 +01:00
• 1ab257af6c v1.0.0-rc.125 (#32) 1.0.0-rc.125 Filip Leonarski 2026-02-18 16:17:21 +01:00
• cec57aec50 Frontend: updates + fixes 2601-completness Filip Leonarski 2026-02-18 15:57:03 +01:00
• 0adf7f2247 CHANGELOG: 1.0.0-rc.125 Filip Leonarski 2026-02-18 15:14:23 +01:00
• 5ed25b887b Frontend: Disable quick integration switch when not using spot finding Filip Leonarski 2026-02-18 15:10:19 +01:00
• 5e535b9d56 Frontend: Update JavaScript Filip Leonarski 2026-02-18 15:03:56 +01:00
• b38d14a34e VERSION: 1.0.0-rc.125 Filip Leonarski 2026-02-18 14:48:47 +01:00
• 838b225a44 OpenAPI: Use generator 7.20.0 Filip Leonarski 2026-02-18 14:35:10 +01:00
• b2dda42db9 BraggPrediction: Zeta set to 1.0 for stills, otherwise merging gets weird Filip Leonarski 2026-02-18 14:32:17 +01:00
• b77ba44de1 jfjoch_process: Remove comment about polarization factor Filip Leonarski 2026-02-18 12:16:26 +01:00
• 682ce5e418 IndexingSettings: FFT should handle cells up to 500.0 A Filip Leonarski 2026-02-18 12:16:13 +01:00
• 08f98dab3c Definitions: Increase MAX_SPOT_COUNT to 64*1024 Filip Leonarski 2026-02-18 12:15:40 +01:00
• ca778992b0 CMake: More options for Ceres backends (to be determined how useful later) Filip Leonarski 2026-02-18 12:15:07 +01:00
• 8759d1f8db Gitea: Add Rocky9 with SLS9 Filip Leonarski 2026-02-18 09:40:28 +01:00
• 87c8a2e93b CMake: All packages are named jfjoch, irrespective of slsdet version (for now) Filip Leonarski 2026-02-18 09:38:57 +01:00
• 0599f1e918 Remove RotationScanAccumulator Filip Leonarski 2026-02-18 09:13:02 +01:00
• 09b74e78e3 CBOR: Fix serialization of h,k,l leonarski_f 2026-02-17 20:27:02 +01:00
• 091b3808a4 ScaleAndMerge: Add statistics leonarski_f 2026-02-17 19:54:37 +01:00
• 0ed72eb2ea ScaleAndMerge: Add statistics leonarski_f 2026-02-17 19:46:28 +01:00
• be5dff5370 Reflection: slightly reduce struct size leonarski_f 2026-02-17 19:23:34 +01:00
• f7f13c45e8 Docs: Add jumbo frames leonarski_f 2026-02-17 18:59:17 +01:00
• 30791b1da0 MXAnalysisAfterFPGA: Add state management to handle disabling functionality properly leonarski_f 2026-02-17 18:53:06 +01:00
• 329be6eb33 ScaleAndMerge: Remove GoF, refactor merging part Filip Leonarski 2026-02-17 13:56:12 +01:00
• 21059d1662 CBOR: Add scale factors (work in progress) Filip Leonarski 2026-02-17 13:43:52 +01:00
• 957980307f jfjoch_process: Add anomalous mode Filip Leonarski 2026-02-17 13:18:40 +01:00
• f3e8379a55 jfjoch_process: Write amplitudes at the end into hkl file in addition to mmCIF file (to be improved later) Filip Leonarski 2026-02-17 13:08:59 +01:00
• c4d4b5d570 BraggIntegrate2D: Fix polarization correction division Filip Leonarski 2026-02-17 13:07:22 +01:00
• 981c8ce0d4 AzimuthalIntegration: Clear naming for polarization factor Filip Leonarski 2026-02-17 13:05:45 +01:00
• c7bf8c4d13 jfjoch_process: Don't write header row for hkl file Filip Leonarski 2026-02-17 12:18:05 +01:00
• 175e938616 BraggIntegrate2D: Lorentz-Polarization correction is not directly applied Filip Leonarski 2026-02-17 11:56:39 +01:00
• 411276415e jfjoch_viewer: Display partiality and reverse LP correction Filip Leonarski 2026-02-17 11:25:07 +01:00
• 1295ee9f85 jfjoch_process: Reformat Filip Leonarski 2026-02-15 19:22:44 +01:00
• 832bbe4d89 ScaleAndMerge: Minor fixes Filip Leonarski 2026-02-15 19:22:03 +01:00
• f0e17fde60 RotationParameters: More flexibility on moving average size Filip Leonarski 2026-02-15 10:37:09 +01:00
• 8325d87982 WriteMmcif: Fix synchrotron site parameters Filip Leonarski 2026-02-13 20:33:29 +01:00
• 936b63a7a9 ScaleAndMerge: Intensities come from merging Filip Leonarski 2026-02-12 21:08:47 +01:00
• 0ae85a63f9 ScaleAndMerge: sigma calculation included Filip Leonarski 2026-02-12 20:12:56 +01:00
• 38199c480f jfjoch_process: Save reflections as mmCIF (experimental) Filip Leonarski 2026-02-12 18:09:35 +01:00
• 1dedd3de33 ScaleAndMerge: Add AI generated sigmas Filip Leonarski 2026-02-12 17:56:32 +01:00
• fd8e263934 jfjoch_process: More fixes Filip Leonarski 2026-02-11 20:41:52 +01:00
• 34b24133c7 jfjoch_process: More fixes Filip Leonarski 2026-02-11 19:59:32 +01:00
• 161df2f5a1 jfjoch_process: Fixes Filip Leonarski 2026-02-11 19:31:07 +01:00
• de8e8d3a64 jfjoch_process: More options Filip Leonarski 2026-02-11 16:26:36 +01:00
• 217e86c23b ScaleAndMerge: Add option to turn off per image mosaicity Filip Leonarski 2026-02-11 16:22:45 +01:00
• 86afb7697e ScaleAndMerge: Add log-scaling residual Filip Leonarski 2026-02-11 16:20:14 +01:00
• 45e4a642f9 ScaleAndMerge: Print full report (for now) and use max number of threads Filip Leonarski 2026-02-10 08:12:47 +01:00
• 44802ddac4 Ceres: Build with C++ threads Filip Leonarski 2026-02-10 08:04:14 +01:00
• 247ed0e1eb BraggPredictionGPU: Fix Filip Leonarski 2026-02-09 20:35:55 +01:00
• 14402f8175 BraggPredictionRotGPU: Save delta_phi in degrees, not radians Filip Leonarski 2026-02-09 18:00:44 +01:00
• e0fd62df2b ScaleAndMerge: Fix symbol names k --> g, remove setting first image scale factor to 1 (it is too weak), remove radians Filip Leonarski 2026-02-09 18:00:23 +01:00
• 684c3df204 ScaleAndMerge: Fix partiality model Filip Leonarski 2026-02-09 12:29:48 +01:00
• c40a0332e7 jfjoch_process: minor fixes to input parameters Filip Leonarski 2026-02-09 10:27:47 +01:00
• f49cb3a6f0 Revert "CCP4: Add library to save MTZs" Filip Leonarski 2026-02-09 10:08:39 +01:00
• d4d1f6cd9c CCP4: Add library to save MTZs Filip Leonarski 2026-02-08 19:55:48 +01:00
• 58f29409e6 jfjoch_process: Fix Filip Leonarski 2026-02-08 19:29:00 +01:00
• 69ebbed8fb jfjoch_process: Add French-Wilson (completely written by Opus 4.6...need to understand it properly first :) ) Filip Leonarski 2026-02-08 19:02:48 +01:00
• 6e28ad3523 jfjoch_process: Include scaling - to be tested Filip Leonarski 2026-02-08 18:45:39 +01:00
• 7f1f28f8d3 ScaleAndMerge: Merge intensities taken from scaling - variances taken directly from least-squares (with some magic from Opus 4.6, which I don't yet understand) Filip Leonarski 2026-02-08 17:22:02 +01:00
• d6265fe589 IndexAndRefine: Save all reflections...to integrate scale and merge Filip Leonarski 2026-02-08 14:44:26 +01:00
• 068ea2eea7 ScaleAndMerge: Further improvement Filip Leonarski 2026-02-08 14:36:06 +01:00
• fb493e8ac2 ScaleAndMerge: Add rotation partiality model Filip Leonarski 2026-02-08 14:26:08 +01:00
• 7177d0fed0 BraggPredictionRot: Fix partiality Filip Leonarski 2026-02-08 14:25:52 +01:00
• e15944ab56 Reflection: Save zeta Filip Leonarski 2026-02-08 13:10:06 +01:00
• 666b52ffc1 JFJochHDF5Reader: Read delta phi Filip Leonarski 2026-02-08 13:00:56 +01:00
• 70343ec058 Reflection: Add delta_phi Filip Leonarski 2026-02-08 12:39:29 +01:00
• b7a3fb09ef IndexAndRefine: Fix wrong include file Filip Leonarski 2026-02-06 11:40:02 +01:00
• 4edebe888e IndexAndRefine: Simple optimization was not good enough - using a non-linear solver leads to considerably better predictions. Filip Leonarski 2026-02-06 11:02:27 +01:00
• aac982a239 DiffractionSpot: Consistent definition of rotation angle Filip Leonarski 2026-02-05 13:46:59 +01:00
• cb7e7ad576 XtalOptimizer: Fix test to include phi angle Filip Leonarski 2026-02-05 11:34:25 +01:00
• ae4c28f127 XtalOptimizer: Fix test to include phi angle Filip Leonarski 2026-02-05 11:26:23 +01:00
• e2ab97c09b XtalOptimizer: Use rotation angle from spot (so it should work for centroid angles) Filip Leonarski 2026-02-05 11:21:17 +01:00
• f9cc99f3c0 SpotToSave: Include phi angle of the spot Filip Leonarski 2026-02-05 11:18:19 +01:00
• a40e4118e6 DiffractionGeometry: Store rotation matrix Filip Leonarski 2026-02-05 11:15:34 +01:00
• ecc924fe4a RotationSpotAccumulator: Should be a bit faster Filip Leonarski 2026-02-05 11:00:02 +01:00
• 1f6477e34f RotationSpotAccumulator: Works, but super slow Filip Leonarski 2026-02-05 10:53:50 +01:00
• 392af14013 RotationSpotAccumulator: Add (Claude 4.5 Opus) Filip Leonarski 2026-02-04 14:46:35 +01:00
• 787e781eb2 jfjoch_tests: Add more tests Filip Leonarski 2026-02-04 11:14:32 +01:00
• e0b7594429 BraggPredictionRot: Getting it (slowly) right with XDS implementation Filip Leonarski 2026-02-04 10:49:58 +01:00