Commit Graph

Select branches

Hide Pull Requests

2506-rot-all

2509-gitea

2509-rc.82

2510-fpga-clamp

2510-rc.88

2510-release

2510-viewer-3D

2510-viewer-improvements

2511-1.0.0-rc.102

2511-1.0.0-rc.104

2511-1.0.0-rc.105

2511-1.0.0-rc.106

2511-1.0.0-rc.107

2511-1.0.0-rc.108

2511-1.0.0-rc.109

2511-1.0.0-rc.110

2511-1.0.0-rc.111

2511-1.0.0-rc.112

2511-1.0.0-rc.113

2511-1.0.0-rc.114

2511-1.0.0-rc.114b

2511-1.0.0-rc.115

2511-1.0.0-rc.115c

2511-1.0.0-rc.116

2511-1.0.0-rc.117

2511-1.0.0-rc.118

2511-1.0.0-rc.119

2511-1.0.0-rc.119b

2511-1.0.0-rc.120

2511-eiger-mask

2511-eiger-mask-3

2511-rc.103

2511-viewer-enh

2511-viewer-enh-2

2512-1.0.0-rc.121

2512-1.0.0-rc.122

2512-scaling-merging

2601-1.0.0-rc.123

2601-1.0.0-rc.124

2601-completness

2602-residual

2602-scaling-d-limit

2603-ep

2603-multilattice

2603-pipeline-upgrades

2603-rc.129

2603-rc.130

2603-rc.131

2603-rc.131-2

2603-single-file

2604-async-start

2604-azint-mapping-parallel

2604-cuda-cleanup

2604-detector-parallel-logic

2604-hdf5-errors

2604-index-and-refine-fix

2604-more-fixes

2604-processing-options

2604-rc.135

2604-rc.136

2604-start-speed

2605-b-factor

2605-hdf-fixes

2605-hdf5-enospc

2605-hdf5-vds

2605-scaling

2605-sigma-correction

2605-speed-up-preview-start

2606-azint

2606-eiger-calib

2606-eiger-module-fix

2606-force-cpu-azint

2606-pixel-refine

2606-q-spacing

2606-rc.156-fixes

2606-sgsearch

2606-tcp

2606-viewer-processing

2606-xds-plugin

2607-rc-160

2607-res-prediction

2607-state-machine

2607-win-viewer

2608-performance

2608-rc-162

adaptive-spot-finding

arm64-bitshuffle-bench

fix-macos-build

french-wilson-model-maps

gitea-pages

macos-port

main

pool-B

rc163-unshare-doc-files

rc164

rc165

rc166

rc167

rc167-no-grid

rc168

rc169

rc170

rc171

rc172

rc172-2

rc173

rc174

rc175

stills-partiality-postrefine

viewer-httplib-mbedtls

viewer-windows

xds-plugin-license

#1

#10

#11

#12

#13

#15

#16

#17

#18

#19

#2

#20

#21

#22

#23

#24

#25

#26

#27

#28

#29

#3

#30

#31

#32

#33

#34

#35

#36

#37

#39

#4

#40

#41

#42

#43

#44

#45

#46

#47

#48

#49

#5

#50

#51

#52

#53

#54

#55

#56

#57

#58

#59

#6

#60

#61

#62

#63

#64

#65

#66

#67

#68

#69

#7

#70

#71

#72

#73

#74

#75

#76

#77

#78

#79

#8

#80

#81

#82

#83

#84

#9

1.0.0-rc.1

1.0.0-rc.100

1.0.0-rc.101

1.0.0-rc.102

1.0.0-rc.103

1.0.0-rc.104

1.0.0-rc.105

1.0.0-rc.106

1.0.0-rc.107

1.0.0-rc.108

1.0.0-rc.109

1.0.0-rc.110

1.0.0-rc.111

1.0.0-rc.112

1.0.0-rc.113

1.0.0-rc.114

1.0.0-rc.115

1.0.0-rc.116

1.0.0-rc.117

1.0.0-rc.118

1.0.0-rc.119

1.0.0-rc.12

1.0.0-rc.120

1.0.0-rc.121

1.0.0-rc.122

1.0.0-rc.123

1.0.0-rc.124

1.0.0-rc.125

1.0.0-rc.126

1.0.0-rc.127

1.0.0-rc.128

1.0.0-rc.129

1.0.0-rc.13

1.0.0-rc.130

1.0.0-rc.131

1.0.0-rc.132

1.0.0-rc.133

1.0.0-rc.134

1.0.0-rc.135

1.0.0-rc.136

1.0.0-rc.137

1.0.0-rc.138

1.0.0-rc.139

1.0.0-rc.14

1.0.0-rc.143

1.0.0-rc.144

1.0.0-rc.145

1.0.0-rc.146

1.0.0-rc.148

1.0.0-rc.149

1.0.0-rc.150

1.0.0-rc.151

1.0.0-rc.152

1.0.0-rc.153

1.0.0-rc.154

1.0.0-rc.155

1.0.0-rc.156

1.0.0-rc.157

1.0.0-rc.158

1.0.0-rc.159

1.0.0-rc.160

1.0.0-rc.161

1.0.0-rc.162

1.0.0-rc.163

1.0.0-rc.164

1.0.0-rc.165

1.0.0-rc.166

1.0.0-rc.167

1.0.0-rc.168

1.0.0-rc.169

1.0.0-rc.17

1.0.0-rc.170

1.0.0-rc.171

1.0.0-rc.172

1.0.0-rc.173

1.0.0-rc.174

1.0.0-rc.18

1.0.0-rc.20

1.0.0-rc.21

1.0.0-rc.22

1.0.0-rc.23

1.0.0-rc.24

1.0.0-rc.26

1.0.0-rc.27

1.0.0-rc.28

1.0.0-rc.29

1.0.0-rc.30

1.0.0-rc.31

1.0.0-rc.32

1.0.0-rc.33

1.0.0-rc.34

1.0.0-rc.35

1.0.0-rc.36

1.0.0-rc.37

1.0.0-rc.38

1.0.0-rc.39

1.0.0-rc.40

1.0.0-rc.41

1.0.0-rc.42

1.0.0-rc.43

1.0.0-rc.44

1.0.0-rc.45

1.0.0-rc.48

1.0.0-rc.49

1.0.0-rc.50

1.0.0-rc.51

1.0.0-rc.54

1.0.0-rc.55

1.0.0-rc.56

1.0.0-rc.57

1.0.0-rc.59

1.0.0-rc.60

1.0.0-rc.61

1.0.0-rc.62

1.0.0-rc.63

1.0.0-rc.64

1.0.0-rc.65

1.0.0-rc.66

1.0.0-rc.67

1.0.0-rc.68

1.0.0-rc.69

1.0.0-rc.70

1.0.0-rc.71

1.0.0-rc.72

1.0.0-rc.73

1.0.0-rc.74

1.0.0-rc.76

1.0.0-rc.77

1.0.0-rc.78

1.0.0-rc.79

1.0.0-rc.80

1.0.0-rc.81

1.0.0-rc.82

1.0.0-rc.83

1.0.0-rc.84

1.0.0-rc.85

1.0.0-rc.86

1.0.0-rc.87

1.0.0-rc.88

1.0.0-rc.89

1.0.0-rc.90

1.0.0-rc.91

1.0.0-rc.92

1.0.0-rc.94

1.0.0-rc.95

1.0.0-rc.96

1.0.0-rc.97

1.0.0-rc.98

1.0.0-rc.99

1.0.0-test5

1.0.0_rc.10

1.0.0_rc.11

1.0.0_rc.6

1.0.0_rc.7

1.0.0_rc.8

1.0.0_rc.9

gitea-test-10

test-docu

test-docu-2

test-docu-3

test-docu-4

test-docu-5

test-docu-6

test-docu-7

test-tag

test-tag-2

Mono Color

• 7c9a6c7d11 Merge branch 'par-centre' into rc175 rc175 leonarski_f 2026-10-08 17:06:49 +02:00
• 2981aedd3e Broker: a collection can be followed from /start, its start message comes in the event stream leonarski_fandClaude Opus 5.5 2026-10-08 17:03:09 +02:00
• de911fe126 rugnux: index at the measured beam centre beside the file centre's first pass, on a second GPU leonarski_fandClaude Opus 5.5 2026-10-08 13:08:44 +02:00
• 72c7409327 Merge branch 'streaming2' into rc175 leonarski_f 2026-10-08 16:46:57 +02:00
• a40ca3058a Merge branch 'partb-fix' into rc175 leonarski_f 2026-10-08 16:46:57 +02:00
• abea06c565 rugnux: the first-pass ladder reads as deep as its lattice still indexes leonarski_fandClaude Opus 5.5 2026-10-08 14:53:19 +02:00
• 1abe52cb64 Merge branch 'par-merge' into rc175 leonarski_f 2026-10-08 15:58:29 +02:00
• 8e134c405d tools: run the broker on a stored dataset, without a detector leonarski_fandClaude Opus 5.5 2026-10-08 15:52:22 +02:00
• 21f30549a7 rugnux: follow a collection from the broker while it is written leonarski_fandClaude Opus 5.5 2026-10-08 15:52:22 +02:00
• 509a54ef92 Broker: tell a reader which data files of the current collection are closed leonarski_fandClaude Opus 5.5 2026-10-08 15:52:21 +02:00
• f970972163 Writer and broker: the master file appears only after every data file it links to leonarski_fandClaude Opus 5.5 2026-10-08 11:35:10 +02:00
• c240690a1b Merge branch 'pp-angle' into rc175 leonarski_f 2026-10-08 14:41:29 +02:00
• 5b91444102 rugnux: take the decisions before pass 2 from the first part of a rotation sweep leonarski_fandClaude Opus 5.5 2026-10-08 09:37:02 +02:00
• 6079c5ab44 Merge branch 'rotscale' into rc175 leonarski_f 2026-10-08 14:12:15 +02:00
• a291c01c09 rugnux: the geometry pre-pass integrates at least 120 deg of the sweep leonarski_fandClaude Opus 5.5 2026-10-08 10:47:13 +02:00
• d9ddc1613d Merge branch 'pplot-det' into rc175 leonarski_f 2026-10-08 13:46:57 +02:00
• 09a8c4e5f3 Merge branch 'gpu-tail2' into rc175 leonarski_f 2026-10-08 13:33:04 +02:00
• 1102514039 rugnux: the rotation-scale walk runs beside the output pass; its probes share one spot detection leonarski_fandClaude Opus 5.5 2026-10-08 13:26:39 +02:00
• 3fa95eea29 RotationScaleMerge: the R_meas staging as members, its group pass on all threads leonarski_fandClaude Opus 5.5 2026-10-08 12:37:29 +02:00
• 308d1ed258 RotationScaleMerge: export the merged reflections on all threads leonarski_fandClaude Opus 5.5 2026-10-08 12:37:29 +02:00
• 76509be727 RotationScaleMerge: MergeAndStats' per-pass arrays as members, reset on all threads leonarski_fandClaude Opus 5.5 2026-10-08 12:37:29 +02:00
• 49abb4a079 XDSPluginTest: expect a signed image's INTx_MAX to pass through as saturated leonarski_fandClaude Opus 5.5 2026-10-08 12:36:40 +02:00
• f290e40d20 GPU azimuthal profile: sum the corrected values in fixed point leonarski_fandClaude Opus 5.5 2026-10-08 12:33:34 +02:00
• 08b318f939 RotationScaleMerge: build the correction surfaces' terms on the device leonarski_fandClaude Opus 5.5 2026-10-08 11:41:15 +02:00
• ef90b933da rugnux: the quality guard's merge on a second GPU, beside the main engine leonarski_fandClaude Opus 5.5 2026-10-08 08:40:15 +02:00
• 50006eff88 Thread count from the CPUs the process may use, not the machine's leonarski_fandClaude Opus 5.5 2026-10-08 08:40:09 +02:00
• 889418e00e Merge branch 'xds-plugin-license' into rc175 leonarski_f 2026-10-08 11:13:48 +02:00
• 2629f3821c XDS plugin 1.1.0: mask module/chip edges, pass saturation through; recommend Durin xds-plugin-license leonarski_fandClaude Opus 5.5 2026-10-08 10:56:34 +02:00
• af3ea9ccad Merge branch 'gpu-tail' into rc175 leonarski_f 2026-10-08 10:22:03 +02:00
• 87f0bdc870 RotationScaleMerge: fit the error model on the device in the GPU build (tier F) leonarski_fandClaude Opus 5.5 2026-10-08 08:52:04 +02:00
• 6e17ae36c8 RotationScaleMerge: the CC1/2 half-sets assigned on the device leonarski_fandClaude Opus 5.5 2026-10-08 08:51:37 +02:00
• e59d227294 RotationScaleMerge: the ISa asymptote's group sums on the device leonarski_fandClaude Opus 5.5 2026-10-08 08:48:46 +02:00
• 7d3766317c WilsonOutliersGPU: free each stage's buffers when it is done leonarski_fandClaude Opus 5.5 2026-10-08 08:51:56 +02:00
• ebc008ad94 Merge branch 'pp50-reg' into rc175 leonarski_f 2026-10-08 07:59:33 +02:00
• 8ed898d5a1 RotationScaleMerge: sort the outlier band's log-spread pairs on the device leonarski_fandClaude Opus 5.5 2026-10-08 07:27:25 +02:00
• 1ad41c875f RotationScaleMerge: the Bijvoet widening of the pooled outlier test measured on the device leonarski_fandClaude Opus 5.5 2026-10-08 07:21:47 +02:00
• 8f605449f2 RotationScaleMergeGPU: hand the error-model samples down compacted and complete leonarski_fandClaude Opus 5.5 2026-10-08 07:14:07 +02:00
• b6f2096015 RotationScaleMerge: the Wilson outlier test on the device in the GPU build leonarski_fandClaude Opus 5.5 2026-10-08 07:07:32 +02:00
• 697ffc9a18 ResolutionCutoff: a bin's CC1/2 is the median over groups of its reflections leonarski_fandClaude Opus 5.5 2026-10-08 06:53:40 +02:00
• 1bb6d59bf7 HotPixelFinder: mask dead pixels, and run on CCD sweeps too leonarski_fandClaude Opus 5.5 2026-10-08 06:53:40 +02:00
• 35f42e7334 BraggPredictionRot: walk only the l of each column that can pass the phi test leonarski_fandClaude Opus 5.5 2026-10-08 06:46:28 +02:00
• c7824f8429 MiniCBF: read a gzipped frame without zero-filling the buffer first leonarski_fandClaude Opus 5.5 2026-10-08 06:46:28 +02:00
• 729dd1706d RotationScaleMerge: the surfaces' resolution-shell edges by selection, not a sort leonarski_fandClaude Opus 5.5 2026-10-08 06:46:28 +02:00
• a8ea35ab97 rugnux: fit the canonical pass's post-refinement beside its merge chain leonarski_fandClaude Opus 5.5 2026-10-08 06:46:26 +02:00
• 11122e4924 Docs: battery report of the rc.175 branch after phase 1, with commentary and figures leonarski_fandClaude Opus 5.5 2026-10-07 23:39:25 +02:00
• 9ced4c4448 RotationScaleMerge: gather the SHELX file's scaled fulls on all threads leonarski_fandClaude Opus 5.5 2026-10-07 20:32:28 +02:00
• 9cc8172da5 rugnux: ingest the scaling engine's host half beside the post-refinement leonarski_fandClaude Opus 5.5 2026-10-07 20:13:29 +02:00
• 19b3499a1a scale_merge: comments no longer name the P1 cross-check, which is gone leonarski_fandClaude Opus 5.5 2026-10-07 19:08:24 +02:00
• bcfa0b11c6 RotationScaleMerge: solve the fulls-scale smoothing's cross-validation side by side leonarski_fandClaude Opus 5.5 2026-10-07 19:02:43 +02:00
• 661f812202 SearchSpaceGroup: prepare a merge once for several single-operator correlations leonarski_fandClaude Opus 5.5 2026-10-07 18:53:49 +02:00
• de9b2a7cd6 rugnux: merge the quality guard's pre-pass frames beside the post-refinement leonarski_fandClaude Opus 5.5 2026-10-07 17:39:13 +02:00
• 1a970eef91 docs: regenerate THIRD_PARTY_NOTICES.md (Mbed TLS replaces curl, XDS plugin note) leonarski_fandClaude Opus 5.5 2026-10-07 21:21:18 +02:00
• 89207fe2bd viewer: cpp-httplib + Mbed TLS instead of libcurl for the broker client leonarski_fandClaude Opus 5.5 2026-10-07 20:37:27 +02:00
• 36366295f2 Windows: viewer installer and rugnux zip from one build leonarski_fandClaude Opus 5.5 2026-10-07 21:04:17 +02:00
• e7f21ec0fe viewer: cpp-httplib + Mbed TLS instead of libcurl for the broker client viewer-httplib-mbedtls leonarski_fandClaude Opus 5.5 2026-10-07 20:37:27 +02:00
• 07ae3c3a40 XDS plugin: GPL linking permission, own tgz with its notices, macOS build; one portable CI build leonarski_fandClaude Opus 5.5 2026-10-07 20:29:19 +02:00
• f97700e084 battery: read 8owm and 8rud as the deposited .cbf.gz; 6ZR0's zip is intact leonarski_fandClaude Opus 5.5 2026-10-07 19:59:40 +02:00
• 016430c0a1 rugnux: TIMING marks for the space-group decisions between the arms and the adopted merge leonarski_fandClaude Opus 5.5 2026-10-07 17:57:11 +02:00
• 1227d4168f rugnux: drop the P1 cross-check; --finalist-ledger makes its own P1 merge leonarski_fandClaude Opus 5.5 2026-10-07 17:57:09 +02:00
• f3c3ea5d3c battery: add 2ygz to the open arm leonarski_fandClaude Opus 5.5 2026-10-07 17:09:05 +02:00
• 5421c569ed rugnux: log the time of each section of the run's tail at debug level leonarski_fandClaude Opus 5.5 2026-10-07 16:13:17 +02:00
• df44edf9ee rugnux: gather the scaffold's shared helpers into one rugnux_internal block leonarski_fandClaude Opus 5.5 2026-10-07 16:01:03 +02:00
• 7b7002d8e3 rugnux: move scaling, merging and the space-group search to RugnuxScaleMerge.cpp leonarski_fandClaude Opus 5.5 2026-10-07 16:00:26 +02:00
• 64baec81e0 rugnux: move the first-pass rotation indexing to RugnuxFirstPass.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:57:02 +02:00
• 7bcdf2a081 rugnux: move the image pass to RugnuxImagePass.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:54:58 +02:00
• 2e0a3bb255 rugnux: move RunAllPasses and the pass arbitration to RugnuxPasses.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:48:43 +02:00
• a341c86b43 rugnux: move PreScan and MaskDefectivePixels to RugnuxPreScan.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:46:52 +02:00
• a4f727d5f9 rugnux: move the powder-calibration fit to RugnuxCalibration.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:44:00 +02:00
• df90848bcd rugnux: move RefineStillsGeometry to RugnuxStills.cpp leonarski_fandClaude Opus 5.5 2026-10-07 15:40:27 +02:00
• 9d0fc1dd52 rugnux: add RugnuxPipeline.h, the private header the Rugnux.cpp split shares leonarski_fandClaude Opus 5.5 2026-10-07 15:38:49 +02:00
• 570b8ac31c 1.0.0-rc.175 leonarski_fandClaude Opus 5.5 2026-10-07 14:14:39 +02:00
• 0c1c963379 Move SpotWidth to bragg_integration/, SpindleCuspLoss and LeftoverLattices to indexing/ leonarski_fandClaude Opus 5.5 2026-10-07 14:04:51 +02:00
• 9ad92b6bfe Move the atomic-model code to image_analysis/structure_refinement/ and WriteModel to writer/ leonarski_fandClaude Opus 5.5 2026-10-07 13:58:20 +02:00
• 08ca1d5764 Move the hot-pixel finder from rugnux/ to image_analysis/hot_pixels/ leonarski_fandClaude Opus 5.5 2026-10-07 13:57:25 +02:00
• e6bbfea4c4 Indexing: a coplanar cell leaves the frame unindexed instead of throwing leonarski_fandClaude Opus 5.5 2026-10-07 13:40:41 +02:00
• 280ff0a4a0 rugnux: remove --estimate-beam-center and the spot-symmetry beam-centre estimator leonarski_fandClaude Opus 5.5 2026-10-07 11:26:12 +02:00
• 082f77eaa8 rugnux: remove the beam-centre ladder (--beam-center-search) leonarski_fandClaude Opus 5.5 2026-10-07 11:05:00 +02:00
• 8c7c222e7d rugnux: the two-pass geometry pre-pass integrates the first half of the sweep by default leonarski_fandClaude Opus 5.5 2026-10-07 11:01:11 +02:00
• 01a4e95041 Two-pass: a partial pre-pass is a sweep of the frames it read, and the guard compares those frames leonarski_fandClaude Opus 5.5 2026-10-07 11:00:25 +02:00
• ed2e0ffadf rugnux: drop the Innosuisse line from the banner leonarski_fandClaude Opus 5.5 2026-10-07 10:37:40 +02:00
• 37b7fdd38d rugnux: the terminal shows numbered steps with timing; the full log goes to <prefix>_log.txt leonarski_fandClaude Opus 5.5 2026-10-07 09:55:44 +02:00
• 91bfb4ae51 Logger: route every logger to one sink; buffered lines keep their own time leonarski_fandClaude Opus 5.5 2026-10-07 09:55:44 +02:00
• 5282dd6199 RotationScaleMerge::RunArm: free the fulls before growing them leonarski_fandClaude Opus 5.5 2026-10-07 11:58:39 +02:00
• 1907f47368 SearchSpaceGroup: per-reflection work on all threads, every sum still serial in the old order leonarski_fandClaude Opus 5.5 2026-10-07 11:58:39 +02:00
• a7a60eb128 jfjoch_viewer: FFT frequency axis 1000x too low leonarski_fandClaude Opus 5.5 2026-10-07 11:14:32 +02:00
• c8e2e6ef56 RotationScaleMerge (tier F): decay / relative-B / radiation-damage sums over the fulls in fixed blocks leonarski_fandClaude Opus 5.5 2026-10-07 01:09:14 +02:00
• ea8132ceca RotationScaleMerge: with the GPU resident, build the per-space-group grouping on the device leonarski_fandClaude Opus 5.5 2026-10-07 01:08:50 +02:00
• 70859bcb60 WilsonOutliers: judged list, per-reflection verdicts and both sorts on all threads leonarski_fandClaude Opus 5.5 2026-10-07 01:08:12 +02:00
• 1f5c63f13c R-free flags: none on a space-group search merge; the assignment on all threads leonarski_fandClaude Opus 5.5 2026-10-07 01:08:12 +02:00
• 437f8729fe RotationScaleMerge: MergeAndStats walks over a group CSR of the fulls, on all threads leonarski_fandClaude Opus 5.5 2026-10-07 01:07:48 +02:00
• 801faa797c --prepass-fraction: the geometry pre-pass image loop on the first part of the sweep only leonarski_fandClaude Opus 5.5 2026-10-07 06:30:20 +02:00
• 9b9c5118c5 Beam-centre ladder: screen each rung on the starting spots, re-find spots only to adopt leonarski_fandClaude Opus 5.5 2026-10-07 00:48:29 +02:00
• 0f9f3ac73c Beam-centre ladder: each trial centre fed, indexed and scored in one go leonarski_fandClaude Opus 5.5 2026-10-06 23:10:26 +02:00
• 76b3956e11 French-Wilson once, on the written merge; none for the P1 cross-check leonarski_fandClaude Opus 5.5 2026-10-06 23:10:26 +02:00
• fc61700c95 Azimuthal geometry cache keeps six geometries instead of one leonarski_fandClaude Opus 5.5 2026-10-06 23:10:07 +02:00
• cf145bcb3e Deploy site gitea-pages leonarski_f 2026-10-06 20:38:39 +00:00
• a395f358ef 1.0.0-rc.174 (#84) main 1.0.0-rc.174 leonarski_f 2026-10-06 14:03:18 +02:00
• 7ad34fc659 Docs: battery report of release 1.0.0-rc.174, with commentary and figures rc174 leonarski_fandClaude Opus 5.5 2026-10-06 08:00:09 +02:00
• ee86aa4bfe Battery: the time figures can count more arms, and a second one zooms on the first 60 s leonarski_fandClaude Opus 5.5 2026-10-06 08:00:09 +02:00
• 3770f42c90 Merge branch 'perf-scale-c1' into rc174 leonarski_f 2026-10-05 20:10:28 +02:00