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2511-1.0.0-rc.102

2511-1.0.0-rc.104

2511-1.0.0-rc.105

2511-1.0.0-rc.106

2511-1.0.0-rc.107

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2511-1.0.0-rc.113

2511-1.0.0-rc.114

2511-1.0.0-rc.114b

2511-1.0.0-rc.115

2511-1.0.0-rc.115c

2511-1.0.0-rc.116

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2511-1.0.0-rc.119b

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2511-eiger-mask

2511-eiger-mask-3

2511-rc.103

2511-viewer-enh

2511-viewer-enh-2

2512-1.0.0-rc.121

2512-1.0.0-rc.122

2512-scaling-merging

2601-1.0.0-rc.123

2601-1.0.0-rc.124

2601-completness

2602-residual

2602-scaling-d-limit

2603-ep

2603-multilattice

2603-pipeline-upgrades

2603-rc.129

2603-rc.130

2603-rc.131

2603-rc.131-2

2603-single-file

2604-async-start

2604-azint-mapping-parallel

2604-cuda-cleanup

2604-detector-parallel-logic

2604-hdf5-errors

2604-index-and-refine-fix

2604-more-fixes

2604-processing-options

2604-rc.135

2604-rc.136

2604-start-speed

2605-b-factor

2605-hdf-fixes

2605-hdf5-enospc

2605-hdf5-vds

2605-scaling

2605-sigma-correction

2605-speed-up-preview-start

2606-azint

2606-eiger-calib

2606-eiger-module-fix

2606-force-cpu-azint

2606-pixel-refine

2606-q-spacing

2606-rc.156-fixes

2606-sgsearch

2606-tcp

2606-viewer-processing

2606-xds-plugin

2607-rc-160

2607-res-prediction

2607-state-machine

2607-win-viewer

adaptive-spot-finding

french-wilson-model-maps

gitea-pages

main

stills-partiality-postrefine

viewer-windows

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gitea-test-10

test-docu

test-docu-2

test-docu-3

test-docu-4

test-docu-5

test-docu-6

test-docu-7

test-tag

test-tag-2

Mono Color

• 4bdf9309dd writer: remove CBF and TIFF writers; only HDF5 is written leonarski_fandClaude Opus 4.8 2026-07-15 10:11:39 +02:00
• 135765e5b5 rugnux: default --refine-geometry on for stills-with-cell; accept F/FP reference columns leonarski_fandClaude Opus 4.8 2026-07-15 07:27:25 +02:00
• 768a926e0c rugnux: reject 2nd-lattice overlaps in the space-group search (E^2 cap) leonarski_fandClaude Opus 4.8 2026-07-14 23:22:38 +02:00
• 4c050b576c rugnux: de-double spurious rotation supercell in candidate selection leonarski_fandClaude Opus 4.8 2026-07-14 21:53:08 +02:00
• 4c5da20eda rugnux: add --partiality-uncertainty stills merge term (partiality-model error) leonarski_fandClaude Opus 4.8 2026-07-14 19:52:46 +02:00
• 2f5ed411e2 rugnux: --refine-geometry stills two-pass (global bundle adjustment + re-index) leonarski_fandClaude Opus 4.8 2026-07-14 18:17:58 +02:00
• 49963ab855 rugnux: move indexing-ambiguity resolution out of ScaleOnTheFly leonarski_fandClaude Opus 4.8 2026-07-14 15:35:40 +02:00
• 3f6462b30f rugnux: rotation indexing always uses FFT/FFTW, never FFBIDX leonarski_fandClaude Opus 4.8 2026-07-14 15:18:58 +02:00
• 95af137146 rugnux: the external reference MTZ is never a scale anchor (stills + rotation) leonarski_fandClaude Opus 4.8 2026-07-14 12:18:19 +02:00
• 9527fa6e2c rugnux: scale self-referenced stills in a single pass (fix weak-data collapse) leonarski_fandClaude Opus 4.8 2026-07-14 12:05:08 +02:00
• 4a5028d98d rugnux: add -r multi geometry refinement (per-image best of three) leonarski_fandClaude Opus 4.8 2026-07-14 12:04:32 +02:00
• fb399480e5 rugnux: add opt-in stills partiality (--still-partiality) leonarski_fandClaude Opus 4.8 2026-07-14 12:03:21 +02:00
• b0202a3aa2 rugnux: default the stills integration box to r=6 (6,8,12) leonarski_fandClaude Opus 4.8 2026-07-14 12:00:26 +02:00
• db8ae0452e rugnux: fix --scale on a self-contained _process.h5 (reflections + error model) leonarski_fandClaude Opus 4.8 2026-07-14 10:06:07 +02:00
• 097b9a29d1 rugnux: add --spot-low-resolution CLI option (exclude beam halo) leonarski_fandClaude Opus 4.8 2026-07-13 23:14:27 +02:00
• 2f3041c44e rugnux: add --min-pix-per-spot CLI option (spot finding) leonarski_fandClaude Opus 4.8 2026-07-13 22:02:49 +02:00
• 2d7ddb1b67 ScaleOnTheFly: resolve the stills indexing ambiguity per image vs a reference leonarski_fandClaude Opus 4.8 2026-07-13 19:46:48 +02:00
• 87778c6500 reader: treat negative total_flux as unknown/absent leonarski_fandClaude Opus 4.8 2026-07-13 19:46:48 +02:00
• 3df9ad631b docker: fix build_in_rocky9.sh shed-check for RHEL9's glib/selinux sources leonarski_fandClaude Opus 4.8 2026-07-13 19:26:45 +02:00
• d90d498cdb docker: put the static libdbus on CMAKE_PREFIX_PATH for Qt6::DBus consumers leonarski_fandClaude Opus 4.8 2026-07-13 19:13:29 +02:00
• b6c2d5848d docker: build the static libdbus with -fPIC so Qt's PIE tools link it leonarski_fandClaude Opus 4.8 2026-07-13 15:52:50 +02:00
• 254bd82d52 docker: add parallel image-build + in-container viewer-verify scripts leonarski_fandClaude Opus 4.8 2026-07-13 15:43:18 +02:00
• 5baf2a2cac docker: static libdbus + disable Qt glib to shed the viewer's .so tail leonarski_fandClaude Opus 4.8 2026-07-13 14:53:23 +02:00
• dd0bffb283 v1.0.0-rc.159 (#69) 1.0.0-rc.159 leonarski_f 2026-07-13 13:54:03 +02:00
• d34c19f6d3 VERSION: 1.0.0-rc.159 french-wilson-model-maps leonarski_f 2026-07-13 11:58:24 +02:00
• 85fcac09b5 scale_merge: floor the R-free test-set size on small data leonarski_fandClaude Opus 4.8 2026-07-13 11:50:28 +02:00
• 069b00349f frontend: show calibration progress and relabel Pedestal as Calibration leonarski_fandClaude Opus 4.8 2026-07-13 11:40:30 +02:00
• d891551127 rugnux: make model validation batch-consistent for fragment screening leonarski_fandClaude Opus 4.8 2026-07-13 11:31:33 +02:00
• f81830df4f scale_merge: rescue a genuine high-symmetry merge from the chi2 gate by its systematic error leonarski_fandClaude Opus 4.8 2026-07-13 09:36:29 +02:00
• b350c46777 docs: reference-based space-group/ambiguity resolution and model alignment leonarski_fandClaude Opus 4.8 2026-07-13 08:58:11 +02:00
• 386f345758 rugnux: probe indexing ambiguities against the model in validation leonarski_fandClaude Opus 4.8 2026-07-13 08:20:27 +02:00
• 465cf1aa5e rugnux: resolve the indexing ambiguity against a reference MTZ (rotation) leonarski_fandClaude Opus 4.8 2026-07-13 08:20:19 +02:00
• e91b520863 rugnux: fix SG/cell from a reference MTZ, and reindex data into the model's enantiomorph leonarski_fandClaude Opus 4.8 2026-07-12 22:30:33 +02:00
• d00f4303c8 scale_merge: add a reindexing-ambiguity resolver leonarski_fandClaude Opus 4.8 2026-07-12 22:30:18 +02:00
• 9f23976e02 tests: add Catch2 tests for R-free flag assignment and French-Wilson leonarski_fandClaude Opus 4.8 2026-07-12 22:06:13 +02:00
• e7fe203625 docs: add rc.159 changelog (rugnux --model, French-Wilson amplitudes, R-free flags) leonarski_fandClaude Opus 4.8 2026-07-12 21:40:40 +02:00
• 97e6d99d03 docs: document French-Wilson amplitudes, R-free flags and model-based maps leonarski_fandClaude Opus 4.8 2026-07-12 21:34:52 +02:00
• d6924aa901 rugnux: add --model for R-free and 2Fo-Fc / Fo-Fc maps from an atomic model leonarski_fandClaude Opus 4.8 2026-07-12 21:22:37 +02:00
• 87af0f419b scale_merge: compute French-Wilson amplitudes at end of merge, write them alongside intensities leonarski_fandClaude Opus 4.8 2026-07-12 21:12:26 +02:00
• 4c95a289b6 scale_merge: harden R-free flag assignment (Bijvoet-safe, deterministic, stratified) leonarski_fandClaude Opus 4.8 2026-07-12 21:08:59 +02:00
• 5addb4483c gemmi_gph: vendor the model / structure-factor headers into the single gemmi target leonarski_fandClaude Opus 4.8 2026-07-12 20:35:02 +02:00
• 451310f43d v1.0.0-rc.158 (#68) 1.0.0-rc.158 leonarski_f 2026-07-12 19:42:29 +02:00
• 575d5d09e4 docs: drop specific sample names/results from the rc.157 changelog note 2607-win-viewer leonarski_fandClaude Opus 4.8 2026-07-12 17:15:37 +02:00
• 523301bc6b docs: note the symmetry/twinning and refined-geometry fixes leonarski_fandClaude Opus 4.8 2026-07-12 17:13:09 +02:00
• 4d20298523 scale_merge: hoist the resolution-cutoff apply/trim into one shared helper leonarski_fandClaude Opus 4.8 2026-07-12 17:05:41 +02:00
• 8ecfa780eb viewer: drop the cached pixel mask when switching HTTP source leonarski_fandClaude Opus 4.8 2026-07-12 17:00:30 +02:00
• d90888b5f9 viewer: give the libcurl HTTP reader a 5 s connect/transfer timeout leonarski_fandClaude Opus 4.8 2026-07-12 17:00:15 +02:00
• 1aac0495e1 frontend: guard the TIFF value colour span against zero/negative leonarski_fandClaude Opus 4.8 2026-07-12 16:59:57 +02:00
• d033b378ae broker: make the writer-error status message self-explanatory leonarski_fandClaude Opus 4.8 2026-07-12 16:59:57 +02:00
• 6c80dbdc32 writer: write refined detector geometry once at the end, incl. translation leonarski_fandClaude Opus 4.8 2026-07-12 16:59:57 +02:00
• 4aab8078d6 rugnux: keep merohedral twins in true symmetry, robustify twinning stats leonarski_fandClaude Opus 4.8 2026-07-12 16:48:27 +02:00
• fbebc0d56e rugnux: run decay + absorption surfaces on the GPU and enable by default leonarski_fandClaude Opus 4.8 2026-07-12 10:56:39 +02:00
• bab52a8077 rugnux: optional decay + absorption correction surfaces for rotation scaling leonarski_fandClaude Opus 4.8 2026-07-12 10:14:00 +02:00
• dee679380b rugnux: exclude merge-rejected outliers from the error-model fit leonarski_fandClaude Opus 4.8 2026-07-12 10:04:43 +02:00
• a854523fee rugnux: fix resolution-cutoff over-extension on low-res crystals leonarski_fandClaude Opus 4.8 2026-07-12 07:08:44 +02:00
• 27802a30a3 docs: changelog for rc.158 rugnux/viewer/robustness changes leonarski_fandClaude Opus 4.8 2026-07-11 23:26:26 +02:00
• 0dfaf0a58a rugnux: don't reuse absent spots on plain DECTRIS datasets leonarski_fandClaude Opus 4.8 2026-07-11 22:56:28 +02:00
• f737424bdf rugnux: move rugnux_cli.cpp from tools/ to rugnux/ leonarski_fandClaude Opus 4.8 2026-07-11 22:38:38 +02:00
• b1cd49c6b5 rugnux: parallelize two-pass rotation first phase leonarski_fandClaude Opus 4.8 2026-07-11 22:35:54 +02:00
• c37bc2d005 viewer/curl: keep <curl/curl.h> out of JFJochHttpReader.h (MSVC build fix) leonarski_fandClaude Opus 4.8 2026-07-11 21:46:53 +02:00
• b3b4f5824e viewer/curl: link vendored libcurl_static directly, not the CURL::libcurl alias leonarski_fandClaude Opus 4.8 2026-07-11 19:17:52 +02:00
• 3b02156fba viewer/curl: dump CURL::libcurl type + imported path when it shadows leonarski_fandClaude Opus 4.8 2026-07-11 19:11:44 +02:00
• 180f93341a viewer/curl: assert CURL::libcurl is the vendored libcurl_static, and log it leonarski_fandClaude Opus 4.8 2026-07-11 19:04:07 +02:00
• 7fd2105f96 tools: add rugnux_vs_xds.py — rugnux vs XDS regression table leonarski_fandClaude Opus 4.8 2026-07-11 18:51:41 +02:00
• 53ffb56aae viewer/curl: clean stale CI build dir + guard against system libcurl shadowing leonarski_fandClaude Opus 4.8 2026-07-11 18:45:51 +02:00
• 4fcbb09771 Dockerfile: For rocky8 one should NOT run dnf update, because it will like to update cuda to 13.3 leonarski_f 2026-07-11 18:00:52 +02:00
• cdcd5d28ca viewer: reuse one libcurl handle so the HTTP reader keeps the connection alive leonarski_fandClaude Opus 4.8 2026-07-11 17:07:05 +02:00
• 007e65cdfe viewer: accept https:// endpoints and add an http/https selector to the connect dialog leonarski_fandClaude Opus 4.8 2026-07-11 15:10:08 +02:00
• 49d078563c viewer: move JFJochHttpReader to the viewer and switch it to libcurl leonarski_fandClaude Opus 4.8 2026-07-11 13:29:15 +02:00
• efd5f3513a Remove upload artifact from Gitea for jfjoch_viewer on Windows (upload doesn't work) leonarski_f 2026-07-11 13:12:58 +02:00
• 6c9a22d7f3 docs: tilt-invariant solid-angle correction; brief changelog docs entry leonarski_fandClaude Opus 4.8 2026-07-11 13:06:39 +02:00
• 05feb74602 VERSION: 1.0.0-rc.158 leonarski_f 2026-07-11 11:33:32 +02:00
• 4b72a89249 harden untrusted-input size handling in TIFF read and raw-TCP frames leonarski_fandClaude Opus 4.8 2026-07-11 11:31:12 +02:00
• acd2025676 azint: tilt-correct solid-angle correction; honour imported rot3 in refinement leonarski_fandClaude Opus 4.8 2026-07-11 11:18:19 +02:00
• e7fbeb527f docs: update analysis references to match current code leonarski_fandClaude Opus 4.8 2026-07-11 10:59:15 +02:00
• c3468eef6c ci: use actions/upload-artifact@v4 for the Windows/CUDA artifact leonarski_fandClaude Opus 4.8 2026-07-11 10:35:00 +02:00
• 7da60c3385 ci: use gitea-upload-artifact@v4 for the Windows/CUDA artifact leonarski_fandClaude Opus 4.8 2026-07-11 10:33:32 +02:00
• 54de990100 viewer: show only the high-resolution limit in the stats hero card leonarski_fandClaude Opus 4.8 2026-07-11 10:32:23 +02:00
• 668855a9e7 viewer: show the merge resolution range in the stats hero row leonarski_fandClaude Opus 4.8 2026-07-11 10:20:34 +02:00
• 61eb661eca ci: upload the Windows/CUDA viewer installer as a build artifact leonarski_fandClaude Opus 4.8 2026-07-11 10:14:25 +02:00
• 85cf1b04d1 docs: changelog for rc.158 viewer/rugnux/packaging changes leonarski_fandClaude Opus 4.8 2026-07-11 10:14:01 +02:00
• 4374babe26 viewer: add a Browse button to the processing output prefix leonarski_fandClaude Opus 4.8 2026-07-11 10:06:04 +02:00
• 936d2efd4a viewer: bundle cuFFT in the Linux .tar.gz like the Windows build leonarski_fandClaude Opus 4.8 2026-07-11 09:57:21 +02:00
• 0ed943dd4d viewer: show the space group in the merge-statistics window leonarski_fandClaude Opus 4.8 2026-07-11 09:52:25 +02:00
• 228841870d rugnux: honour an absolute -o output prefix leonarski_fandClaude Opus 4.8 2026-07-11 09:51:03 +02:00
• 9b1ab02c41 viewer: control _process.h5 and merged .mtz/.cif output independently leonarski_fandClaude Opus 4.8 2026-07-11 09:42:23 +02:00
• 343af8deed viewer: write processing output next to the input file leonarski_fandClaude Opus 4.8 2026-07-11 09:40:28 +02:00
• 8858951419 rugnux: allow absolute output paths for offline processing leonarski_fandClaude Opus 4.8 2026-07-11 09:39:46 +02:00
• 4292c990ea viewer: open WSL/UNC paths by converting to native separators leonarski_fandClaude Opus 4.8 2026-07-11 09:36:53 +02:00
• 54c0100e8e v1.0.0-rc.157 (#67) 1.0.0-rc.157 leonarski_f 2026-07-11 07:19:11 +02:00
• d4544bd3c8 rugnux: trim phase/timing log noise, keep step results 2607-state-machine leonarski_fandClaude Opus 4.8 2026-07-10 22:24:35 +02:00
• ef103d2ea2 rugnux: raise default min-captured-fraction to 0.7 (recover weak F-cubic space groups) leonarski_fandClaude Opus 4.8 2026-07-10 22:11:30 +02:00
• 1ea3846957 docs: CHANGELOG entries for weak-data indexing and min-captured-fraction leonarski_fandClaude Opus 4.8 2026-07-10 20:40:01 +02:00
• 7b8e08cd96 rugnux: index weakly-diffracting low-resolution rotation data (Benas F-cubic) leonarski_fandClaude Opus 4.8 2026-07-10 20:29:59 +02:00
• f0799f780b rugnux: drop edge-of-sweep truncated fulls + honest R-meas over accepted obs leonarski_fandClaude Opus 4.8 2026-07-10 20:13:06 +02:00
• 403e6e7a68 docs: bring the rc.157 CHANGELOG up to date with the branch leonarski_fandClaude Opus 4.8 2026-07-10 15:32:05 +02:00
• 1b6831a2d3 rugnux: gate the P1 space-group-search scaling at <I/sigma> >= 1 leonarski_fandClaude Opus 4.8 2026-07-10 15:20:10 +02:00
• f6eca6c69e bragg_integration: quantization-noise variance floor + summation fallback leonarski_fandClaude Opus 4.8 2026-07-10 14:30:15 +02:00
• 04bce94f4e frontend: visualize mask + pedestal TIFFs in-browser leonarski_fandClaude Opus 4.8 2026-07-10 14:07:13 +02:00
• 314caacee7 frontend: reflow ROI panel into readable rows leonarski_fandClaude Opus 4.8 2026-07-10 13:24:59 +02:00