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2512-scaling-merging

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2602-residual

2602-scaling-d-limit

2603-ep

2603-multilattice

2603-pipeline-upgrades

2603-rc.129

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2603-rc.131

2603-rc.131-2

2603-single-file

2604-async-start

2604-azint-mapping-parallel

2604-cuda-cleanup

2604-detector-parallel-logic

2604-hdf5-errors

2604-index-and-refine-fix

2604-more-fixes

2604-processing-options

2604-rc.135

2604-rc.136

2604-start-speed

2605-b-factor

2605-hdf-fixes

2605-hdf5-enospc

2605-hdf5-vds

2605-scaling

2605-sigma-correction

2605-speed-up-preview-start

2606-azint

2606-eiger-calib

2606-eiger-module-fix

2606-force-cpu-azint

2606-pixel-refine

2606-q-spacing

2606-rc.156-fixes

2606-sgsearch

2606-tcp

2606-viewer-processing

2606-xds-plugin

2607-rc-160

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2607-state-machine

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adaptive-spot-finding

french-wilson-model-maps

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main

stills-partiality-postrefine

viewer-windows

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gitea-test-10

test-docu

test-docu-2

test-docu-3

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test-tag

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Mono Color

• 2a31cf8d81 Viewer: stop forcing FullViewportUpdate in JFJochSimpleImage leonarski_fandClaude Opus 5 2026-07-26 20:13:21 +02:00
• 4892c57119 Viewer: paint the resolution readout in drawForeground, not as a scene item leonarski_fandClaude Opus 5 2026-07-26 20:13:04 +02:00
• 501ce1ba3d Viewer: rate-limit hover feedback to ~15 Hz leonarski_fandClaude Opus 5 2026-07-26 20:12:36 +02:00
• 3eccc58961 Viewer: colour the diffraction image straight from int32 leonarski_fandClaude Opus 5 2026-07-26 19:12:55 +02:00
• 0b926af5af Viewer: cache the traced resolution-ring contours leonarski_fandClaude Opus 5 2026-07-26 19:04:52 +02:00
• c3eba650e9 Viewer: one overlay rebuild per pan/zoom, and only invalidate the image when it changed leonarski_fandClaude Opus 5 2026-07-26 19:03:05 +02:00
• fd9f93e1f1 Viewer: stop copying the image in LoadImageInternal, parallelise it leonarski_fandClaude Opus 5 2026-07-26 19:00:37 +02:00
• 417170bc13 Viewer: coalesce foreground/background recolours leonarski_fandClaude Opus 5 2026-07-26 18:59:45 +02:00
• a704a2cd33 Viewer: draw the rendered image directly instead of via a QPixmap leonarski_fandClaude Opus 5 2026-07-26 18:58:55 +02:00
• 0cee55f654 Viewer: drop the full-size image_rgb mirror leonarski_fandClaude Opus 5 2026-07-26 18:56:17 +02:00
• 96e10fd1f0 Viewer: reuse the QImage buffer in GeneratePixmap leonarski_fandClaude Opus 5 2026-07-26 18:55:22 +02:00
• a8c1006c49 Choose min-pix-per-spot adaptively per image for serial-stills indexing leonarski_fandClaude Opus 4.8 2026-07-26 18:31:35 +02:00
• 9fdeed282a Add fused GPU adaptive spot finder (azint + spot finding in one pass) leonarski_fandClaude Opus 4.8 2026-07-25 20:10:45 +02:00
• 014e43a4c9 Remove non-helping stills merge/scaling knobs leonarski_fandClaude Opus 4.8 2026-07-25 17:40:48 +02:00
• 20bbcb1cd3 Remove --soft-weight and --local-snr spot-finder options leonarski_fandClaude Opus 4.8 2026-07-25 17:31:35 +02:00
• f72b4484e2 Remove dead per-crystal deltaCChalf rejection leonarski_fandClaude Opus 4.8 2026-07-25 15:05:06 +02:00
• ecf79af018 Remove threshold-free persistence spot-detection variant leonarski_fandClaude Opus 4.8 2026-07-25 12:41:44 +02:00
• ca7cbe206a Add opt-in local-SNR spot gate and acceptance-fraction knob (serial stills) leonarski_fandClaude Opus 4.8 2026-07-24 11:12:22 +02:00
• 503bd36738 Apply --min-image-cc merge-consistency filter on the stills merge path leonarski_fandClaude Opus 4.8 2026-07-24 08:41:48 +02:00
• 17eed80ff9 Seed still indexing with the strongest spots; refine with all leonarski_fandClaude Opus 4.8 2026-07-23 23:53:40 +02:00
• 7c5bedfd74 Add soft per-spot quality weighting for adaptive spot detection leonarski_fandClaude Opus 4.8 2026-07-23 19:53:55 +02:00
• 6de03bc443 Add threshold-free persistence variant of adaptive spot detection leonarski_fandClaude Opus 4.8 2026-07-23 17:38:18 +02:00
• 9a8c946555 Add self-calibrating adaptive spot detection for offline stills leonarski_fandClaude Opus 4.8 2026-07-23 17:23:19 +02:00
• efe96fe2ae Add physical partiality post-refinement for stills (default on) stills-partiality-postrefine leonarski_fandClaude Opus 4.8 2026-07-23 14:45:43 +02:00
• 1a2b0181a5 Add physical partiality post-refinement for stills (default on) leonarski_fandClaude Opus 4.8 2026-07-23 14:45:43 +02:00
• cc850f181d viewer: don't rebuild the overlay while panning 2607-res-prediction leonarski_fandClaude Opus 4.8 2026-07-23 11:04:14 +02:00
• 54b1699d1f viewer: coalesce overlay rebuilds from navigation events leonarski_fandClaude Opus 4.8 2026-07-23 11:02:35 +02:00
• 975ae421f0 viewer: crisp nearest-neighbour detector image (drop SmoothPixmapTransform) leonarski_fandClaude Opus 4.8 2026-07-23 11:01:36 +02:00
• cbc6a85157 Debias stills merge with expected-variance weighting leonarski_fandClaude Opus 4.8 2026-07-22 22:50:25 +02:00
• c52886c8ff Guard degenerate asymptotic-ISa fit on low-multiplicity data leonarski_fandClaude Opus 4.8 2026-07-21 23:02:40 +02:00
• 81dbf9a385 Fix empty spot-plot and resolution percentile in SpotAnalyze leonarski_fandClaude Opus 4.8 2026-07-21 09:53:33 +02:00
• 2fb47d9ffe Deploy site gitea-pages leonarski_f 2026-07-19 09:00:52 +00:00
• 67dca388bd v1.0.0-rc.160 (#70) main 1.0.0-rc.160 leonarski_f 2026-07-19 09:39:28 +02:00
• a79f05134b rugnux: also write merged reflections as SHELX HKLF-4 (.hkl) 2607-rc-160 leonarski_fandClaude Opus 4.8 2026-07-19 07:56:55 +02:00
• 55efd42045 tests: seed spindle-parallel beam at truth in XtalOptimizer_rotation leonarski_fandClaude Opus 4.8 2026-07-19 07:08:44 +02:00
• 074aca55e8 rugnux: supercell-collapse guard forces pass-1's full indexer result leonarski_fandClaude Opus 4.8 2026-07-19 00:14:09 +02:00
• e6cb627c6f rugnux: two-pass supercell-collapse guard + post-refine fixes leonarski_fandClaude Opus 4.8 2026-07-18 23:14:41 +02:00
• 812ea94a86 rugnux: code-review fixes across the offline path leonarski_fandClaude Opus 4.8 2026-07-18 23:14:25 +02:00
• 99617c549a docs: rc.160 changelog + CPU_DATA_ANALYSIS/RUGNUX updates leonarski_fandClaude Opus 4.8 2026-07-18 23:14:09 +02:00
• fcafc61be6 rugnux: two-pass refined pass takes the canonical (unsuffixed) output name leonarski_fandClaude Opus 4.8 2026-07-18 22:21:07 +02:00
• 09e4c1116e rugnux/viewer: rotation geometry post-refine on by default leonarski_fandClaude Opus 4.8 2026-07-18 22:14:53 +02:00
• 6e277668b6 rugnux: header line for the per-image _image.dat scaling table leonarski_fandClaude Opus 4.8 2026-07-18 22:08:18 +02:00
• c5cfdcef7e rugnux: per-batch relative-B correction + radiation-damage B monitor leonarski_fandClaude Opus 4.8 2026-07-18 22:08:09 +02:00
• e97a610091 rugnux: reindex the de-novo primitive cell to the group's conventional setting (two-pass) leonarski_fandClaude Opus 4.8 2026-07-18 20:03:47 +02:00
• 290c30b9be rugnux: post-refine commits detector/cell geometry only for a small (< 1 %) move leonarski_fandClaude Opus 4.8 2026-07-18 19:41:12 +02:00
• 0ebf90a1ad rugnux: two-pass second pass re-indexes de novo, reuses the group for the merge only leonarski_fandClaude Opus 4.8 2026-07-18 19:41:12 +02:00
• 1089b75906 rugnux: two-pass writes both passes (_01 header geometry, _02 refined) leonarski_fandClaude Opus 4.8 2026-07-18 17:45:39 +02:00
• c140b3567d rugnux: restrain the gauge-weak beam centre toward the header in geometry refinement leonarski_fandClaude Opus 4.8 2026-07-18 17:31:45 +02:00
• c9ed9c3776 rugnux: two-pass reuses pass-1 space group; floor the fed mosaicity leonarski_fandClaude Opus 4.8 2026-07-18 13:04:04 +02:00
• 1b91823eed rugnux: --rotation-post-refine two-pass geometry post-refinement (opt-in) leonarski_fandClaude Opus 4.8 2026-07-18 12:19:33 +02:00
• f396385e11 rugnux: record the detector distance and beam centre in the merged mmCIF leonarski_fandClaude Opus 4.8 2026-07-18 12:19:16 +02:00
• 9bfecaadf5 beam_stop: add ShadowFinder detection class (unwired) leonarski_fandClaude Opus 4.8 2026-07-18 12:05:05 +02:00
• 1911875e1c integration: carry the box-sum observed centroid through the profile path leonarski_fandClaude Opus 4.8 2026-07-18 10:23:17 +02:00
• 7ceffde5a4 rugnux: rank space groups by net absences, not gross (fix C222 over-centering) leonarski_fandClaude Opus 4.8 2026-07-17 22:35:12 +02:00
• 742a1c1b94 rugnux: identify the producing software in the merged mmCIF and MTZ leonarski_fandClaude Opus 4.8 2026-07-17 21:29:47 +02:00
• e209069ccd docs: compress the rc.160 changelog entries to one-line summaries leonarski_fandClaude Opus 4.8 2026-07-17 21:02:34 +02:00
• 3a23c79ea4 docs: document the asymptotic ISa reporting and the azint Q-field precision leonarski_fandClaude Opus 4.8 2026-07-17 20:58:38 +02:00
• 59e260876a rugnux: recover the asymptotic ISa on weak / radiation-damaged data leonarski_fandClaude Opus 4.8 2026-07-17 20:33:26 +02:00
• 88359a57ee rugnux: report ISa at its asymptotic definition (strong-reflection limit) leonarski_fandClaude Opus 4.8 2026-07-17 20:14:53 +02:00
• 174b9585c5 docs: document SigAno and the low-energy centering fix leonarski_fandClaude Opus 4.8 2026-07-17 17:06:00 +02:00
• 7fe12773de rugnux: report anomalous signal-to-noise SigAno (stats table + mmCIF) leonarski_fandClaude Opus 4.8 2026-07-17 17:05:41 +02:00
• 1b5eb80ba4 rugnux: recover I-centering on weak / low-energy data (centering rate gate) leonarski_fandClaude Opus 4.8 2026-07-17 17:05:17 +02:00
• 32c7f9f59f rugnux: don't veto genuine high symmetry on excellent data (b-veto floor) leonarski_fandClaude Opus 4.8 2026-07-17 14:51:27 +02:00
• afae1dec2f rugnux: index long finely-spaced axes (de-novo two-pass long-axis rescue) leonarski_fandClaude Opus 4.8 2026-07-17 14:33:58 +02:00
• 799e1e15ec frontend: configurable decimal precision, 5 places for azint Q fields leonarski_fandClaude Opus 4.8 2026-07-17 19:25:16 +02:00
• 65bc40e7c7 merge: deltaCChalf uses the deterministic HalfForImage split, not an RNG leonarski_fandClaude Opus 4.8 2026-07-17 13:19:51 +02:00
• 0c33139983 rugnux: radiation-damage report for rotation (per-image CC vs dose) leonarski_fandClaude Opus 4.8 2026-07-17 11:57:51 +02:00
• b647cf454c rugnux: write I(+)/I(-) and F(+)/F(-) by default (rotation) leonarski_fandClaude Opus 4.8 2026-07-17 11:52:31 +02:00
• b945444372 rugnux_vs_xds.py: find the current rugnux binary (build*/rugnux/rugnux) leonarski_fandClaude Opus 4.8 2026-07-17 10:46:09 +02:00
• 67a18357b5 rugnux: fix de-novo space-group centering and weak-data high symmetry leonarski_fandClaude Opus 4.8 2026-07-17 10:46:09 +02:00
• d1f6b382a6 docs: rc.160 changelog (trim + scrub) and CPU_DATA_ANALYSIS updates leonarski_fandClaude Opus 4.8 2026-07-17 09:25:39 +02:00
• 7d1fb8db77 bragg integration: clarify that the trimmed background applies to stills too leonarski_fandClaude Opus 4.8 2026-07-17 09:23:13 +02:00
• 7a9d25850c rugnux: veto a b-ballooning merohedral-twin over-promotion (space-group search) leonarski_fandClaude Opus 4.8 2026-07-17 09:23:13 +02:00
• e9a913f84b scale_merge: remove sample identities from SearchSpaceGroup comments leonarski_fandClaude Opus 4.8 2026-07-17 08:58:17 +02:00
• 3bfce24faa rugnux: score the decay cross-validation on the sigma-independent metric leonarski_fandClaude Opus 4.8 2026-07-17 08:58:17 +02:00
• 8bd0977833 rugnux_vs_xds.py: drop the removed --scaling-output flag leonarski_fandClaude Opus 4.8 2026-07-17 08:58:17 +02:00
• 85cf826d2e rugnux: dataset Wilson B-factor estimate + robust per-image Wilson B leonarski_fandClaude Opus 4.8 2026-07-17 08:58:17 +02:00
• 3b168a1a46 viewer: expose detector-plane modulation and background trim in the settings dock leonarski_fandClaude Opus 4.8 2026-07-17 07:48:10 +02:00
• 74d7589abe stills: optional detector-plane modulation (flat-field) correction leonarski_fandClaude Opus 4.8 2026-07-16 20:45:44 +02:00
• c3e877d5ec bragg integration: trimmed-mean background, on by default for rotation leonarski_fandClaude Opus 4.8 2026-07-16 18:32:57 +02:00
• 118f0833dc common: remove dead Reflection.completeness field leonarski_fandClaude Opus 4.8 2026-07-16 18:32:40 +02:00
• 818ec8fcbf rugnux: add detector-plane modulation (flat-field) correction surface leonarski_fandClaude Opus 4.8 2026-07-16 13:24:10 +02:00
• eae7ea90dc rugnux: always write both MTZ and CIF; drop --scaling-output leonarski_fandClaude Opus 4.8 2026-07-16 10:45:08 +02:00
• ce12d69751 rugnux: write standard CCP4 anomalous MTZ (IMEAN + I(+)/I(-)) leonarski_fandClaude Opus 4.8 2026-07-16 10:37:56 +02:00
• ce15900471 changelog: add the 1.0.0-rc.160 section leonarski_fandClaude Opus 4.8 2026-07-15 22:20:14 +02:00
• 0e4f91b219 rugnux: validate offline spot-finding settings and bound numeric options leonarski_fandClaude Opus 4.8 2026-07-15 22:19:59 +02:00
• 8fea7f195a docs: stop advertising the removed CBF/TIFF writers leonarski_fandClaude Opus 4.8 2026-07-15 22:19:46 +02:00
• d393ec814c Remove residual sample identities missed by the earlier scrub leonarski_fandClaude Opus 4.8 2026-07-15 22:18:32 +02:00
• 68272a96e1 VERSION: 1.0.0-rc.160 leonarski_f 2026-07-15 21:41:51 +02:00
• b450140816 rugnux: warn when the cell/space group has an indexing ambiguity leonarski_fandClaude Opus 4.8 2026-07-15 20:38:31 +02:00
• 3e3545770f indexing: check candidate angles against the reference cell in Refine() leonarski_fandClaude Opus 4.8 2026-07-15 19:47:29 +02:00
• 0f07b7a499 rotation: widen candidate-refine angle bound to [30,150] deg leonarski_fandClaude Opus 4.8 2026-07-15 19:47:17 +02:00
• 643bda3dd3 stills: widen per-frame cell-refine angle bound to [30,150] deg leonarski_fandClaude Opus 4.8 2026-07-15 19:13:41 +02:00
• 7b2cfb20f8 changelog: document the supercell fix, -S symbol, and FFTW-on-GPU error leonarski_fandClaude Opus 4.8 2026-07-15 17:19:43 +02:00
• d8e909a393 indexing: clear error when the requested indexer is unavailable on this host leonarski_fandClaude Opus 4.8 2026-07-15 17:19:43 +02:00
• abbee2d4dc Remove sample identities from the repository; document the rule leonarski_fandClaude Opus 4.8 2026-07-15 17:19:43 +02:00
• 0f3ccda779 rugnux: fix de-novo rotation indexing adopting a spurious axis-multiple supercell leonarski_fandClaude Opus 4.8 2026-07-15 15:23:43 +02:00
• bd094e585f rugnux: accept a space-group symbol for -S, not just a number leonarski_fandClaude Opus 4.8 2026-07-15 15:23:31 +02:00
• ebe7e7ec5e jfjoch_viewer: retry deferred initial fit on resize (grid-scan zoom) leonarski_fandClaude Opus 4.8 2026-07-15 11:28:09 +02:00
• 5d1ddccee8 viewer: expose stills processing settings; rename geom refinement multi -> flex leonarski_fandClaude Opus 4.8 2026-07-15 11:28:09 +02:00