CHANGELOG: 1.0.0-rc.184 condensed
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Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_01HVeDQsU5a8AJUdJPgWevAK
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leonarski_fandClaude Opus 5.5 committed 2026-11-10 16:55:59 +01:00
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### 1.0.0-rc.184
* Rugnux: Faster rotation processing, above all indexing and model refinement; live processing in jfjoch_broker finishes sooner after the last image.
* Rugnux: More reliable rotation processing - merged intensities are no longer bent along resolution where part of the detector is shadowed, a spurious spot and its Friedel mate no longer pass outlier rejection, a weak spot's position no longer upsets geometry refinement, and unit-cell e.s.d.s include the uncertainty of the detector distance.
* Rugnux: Model refinement no longer fails on a model whose residues are not in the restraint dictionary.
* Rugnux: More reliable indexing of small-molecule and supercell cases.
* Rugnux: More robust serial data - indexing ambiguity, detector distance and scaling; a cell given with `-C` is refined as a prior, with a warning where the data disagree.
* Rugnux: Molecular replacement also searches each chain of a multi-chain model on its own.
* jfjoch_broker (experimental): Live serial processing keeps the detector geometry fitted at the start of the run for the whole run, which fixes a failure when the geometry changed during the collection.
* jfjoch_broker: The per-image pixel sum is also computed without an FPGA (DECTRIS detectors) and read back from HDF5; pixels outside a CCD's active area have a pixel-mask bit of their own (bit 11).
* jfjoch_broker: Changing the indexing settings repeatedly no longer exhausts GPU memory, the metadata stream no longer holds up image processing, and an internal-generator run larger than the card's memory is refused with an error instead of hanging.
* jfjoch_broker: The broker's own rotation indexing and quick integration are removed (rugnux live mode does this); their API settings are deprecated and ignored. Rugnux's `--single-pass-rotation` is removed.
* jfjoch_viewer: Builds with a Qt that uses zstd, and a re-analysed image that no longer indexes shows no lattice.
* Documentation: A rewritten README on what Jungfraujoch, Rugnux and the viewer are and how to run Rugnux; processing several sweeps of one crystal in one run is documented as experimental.
* Rugnux: Rotation processing recovers most of the speed lost since 1.0.0-rc.180; live processing in jfjoch_broker finishes sooner.
* Rugnux: More reliable rotation processing and indexing, including small molecules and supercells.
* Rugnux: More robust serial data and model refinement; molecular replacement handles multi-chain models.
* jfjoch_broker (experimental): Live serial processing keeps the detector geometry fixed for the whole run.
* jfjoch_broker: Pixel sum without an FPGA, a mask bit for inactive pixels, and several stability fixes.
* jfjoch_broker: Rotation indexing and quick integration moved to rugnux live mode; their API settings are deprecated and ignored.
* jfjoch_broker, Rugnux: Azimuthal integration can use logarithmic (log10) Q bins or a given number of bins, set from the API, the web interface and the Rugnux command line.
* jfjoch_viewer: Build and display fixes; the README is rewritten.
### 1.0.0-rc.183