udp_cleardst in fpga (#490)

* set number of destination in fpga as well when using udp_cleardst

* ensures fpga destinations are also cleared up

* binaries in

.clang-tidy

@@ -19,6 +19,7 @@ Checks:          '*,
                     -google-readability-braces-around-statements,
                     -modernize-use-trailing-return-type,
                     -readability-isolate-declaration,
+                    -readability-implicit-bool-conversion,
                     -llvmlibc-*'
 
 HeaderFilterRegex: \.h

CMakeLists.txt

@@ -1,13 +1,15 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 cmake_minimum_required(VERSION 3.12)
 project(slsDetectorPackage)
-set(PROJECT_VERSION 5.1.0)
-include(CheckIPOSupported)
+set(PROJECT_VERSION 6.1.1)
+
 set(CMAKE_CXX_FLAGS_RELEASE "-O3 -DNDEBUG")
 
 cmake_policy(SET CMP0074 NEW)
 include(cmake/project_version.cmake)
-
-# Include additional modules that are used unconditionally
+include(cmake/SlsAddFlag.cmake)
+include(cmake/SlsFindZeroMQ.cmake)
 include(GNUInstallDirs)
 
 # If conda build, always set lib dir to 'lib'
@@ -21,7 +23,7 @@ string(TOLOWER "${PROJECT_NAME}" PROJECT_NAME_LOWER)
 
 # Set targets export name (used by slsDetectorPackage and dependencies)
 set(TARGETS_EXPORT_NAME "${PROJECT_NAME_LOWER}-targets")
-#set(namespace "${PROJECT_NAME}::")
+set(namespace "sls::")
 
 set(CMAKE_MODULE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
 
@@ -32,6 +34,8 @@ if (CMAKE_CURRENT_SOURCE_DIR STREQUAL CMAKE_SOURCE_DIR)
     set(SLS_MASTER_PROJECT ON)
 endif()
 
+
+
 option(SLS_USE_HDF5 "HDF5 File format" OFF)
 option(SLS_BUILD_SHARED_LIBRARIES "Build shared libaries" ON)
 option(SLS_USE_TEXTCLIENT "Text Client" ON)
@@ -51,7 +55,33 @@ option(SLS_TUNE_LOCAL "tune to local machine" OFF)
 option(SLS_DEVEL_HEADERS "install headers for devel" OFF)
 option(SLS_USE_MOENCH "compile zmq and post processing for Moench" OFF)
 
-# set(ClangFormat_BIN_NAME clang-format)
+#Convenience option to switch off defaults when building Moench binaries only
+option(SLS_BUILD_ONLY_MOENCH "compile only Moench" OFF)
+if(SLS_BUILD_ONLY_MOENCH)
+    message(STATUS "Build MOENCH binaries only!")
+    set(SLS_BUILD_SHARED_LIBRARIES OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
+    set(SLS_USE_TEXTCLIENT OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
+    set(SLS_USE_DETECTOR OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
+    set(SLS_USE_RECEIVER OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
+    set(SLS_USE_RECEIVER_BINARIES OFF CACHE BOOL "Disabled for MOENCH_ONLY" FORCE)
+    set(SLS_USE_MOENCH ON CACHE BOOL "Enable" FORCE)
+endif()
+
+
+option(SLS_EXT_BUILD "external build of part of the project" OFF)
+if(SLS_EXT_BUILD)
+    message(STATUS "External build using already installed libraries")
+    set(SLS_BUILD_SHARED_LIBRARIES OFF CACHE BOOL "Should already exist" FORCE)
+    set(SLS_USE_TEXTCLIENT OFF CACHE BOOL "Should already exist" FORCE)
+    set(SLS_USE_DETECTOR OFF CACHE BOOL "Should already exist" FORCE)
+    set(SLS_USE_RECEIVER OFF CACHE BOOL "Should already exist" FORCE)
+    set(SLS_USE_RECEIVER_BINARIES OFF CACHE BOOL "Should already exist" FORCE)
+    set(SLS_MASTER_PROJECT OFF CACHE BOOL "No master proj in case of extbuild" FORCE) 
+endif()
+
+#Maybe have an option guarding this?
+set(SLS_INTERNAL_RAPIDJSON_DIR ${CMAKE_CURRENT_SOURCE_DIR}/libs/rapidjson)
+
 set(ClangFormat_EXCLUDE_PATTERNS    "build/" 
                                     "libs/" 
                                     "slsDetectorCalibration/" 
@@ -62,11 +92,6 @@ set(ClangFormat_EXCLUDE_PATTERNS    "build/"
                                     ${CMAKE_BINARY_DIR})
 find_package(ClangFormat)
 
-#Enable LTO if available
-check_ipo_supported(RESULT SLS_LTO_AVAILABLE)
-message(STATUS "SLS_LTO_AVAILABLE:" ${SLS_LTO_AVAILABLE})
-
-
 set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
 
 if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
@@ -75,70 +100,77 @@ if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
 endif()
 
 
-#Add two fake libraries to manage options
-add_library(slsProjectOptions INTERFACE)
-add_library(slsProjectWarnings INTERFACE)
-target_compile_features(slsProjectOptions INTERFACE cxx_std_11)
-target_compile_options(slsProjectWarnings INTERFACE 
-                                            -Wall
-                                            -Wextra
-                                            -Wno-unused-parameter #Needs to be slowly mitigated
-                                            # -Wold-style-cast
-                                            -Wnon-virtual-dtor
-                                            -Woverloaded-virtual
-                                            -Wdouble-promotion
-                                            -Wformat=2
-                                            -Wredundant-decls
-                                            # -Wconversion
-                                            -Wvla
-                                            -Wdouble-promotion
-                                            -Werror=return-type
-
-                                 )
-
-#Settings for C code
-add_library(slsProjectCSettings INTERFACE)
-target_compile_features(slsProjectCSettings INTERFACE c_std_99)
-target_compile_options(slsProjectCSettings INTERFACE 
-                                            -Wall
-                                            -Wextra
-                                            -Wno-unused-parameter
-                                            -Wdouble-promotion
-                                            -Wformat=2
-                                            -Wredundant-decls
-                                            -Wdouble-promotion
-                                            -Werror=return-type
-                                )
+#Enable LTO if available
+include(CheckIPOSupported)
+check_ipo_supported(RESULT SLS_LTO_AVAILABLE)
+if((CMAKE_BUILD_TYPE STREQUAL "Release") AND SLS_LTO_AVAILABLE)
+    message(STATUS "Building with link time optimization")
+else()
+    message(STATUS "Building without link time optimization")
+endif()
 
 
-#Testing for minimum version for compilers
-if ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "Clang")
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 3.2)
-        message(FATAL_ERROR "Clang version must be at least 3.2!")
-    endif()
-    target_compile_options(slsProjectWarnings INTERFACE -Wshadow) #Clag does not warn on constructor
-elseif ("${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 4.8)
-            message(FATAL_ERROR "GCC version must be at least 4.8!")
-    endif()
+if(SLS_EXT_BUILD)
+    # Find ourself in case of external build
+    find_package(slsDetectorPackage ${PROJECT_VERSION} REQUIRED)
+endif()
 
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5)
+
+
+# slsProjectOptions and slsProjectWarnings are used
+# to control options for the libraries
+if(NOT TARGET slsProjectOptions)
+    add_library(slsProjectOptions INTERFACE)
+    target_compile_features(slsProjectOptions INTERFACE cxx_std_11)
+endif()
+
+if (NOT TARGET slsProjectWarnings)
+    add_library(slsProjectWarnings INTERFACE)
+    target_compile_options(slsProjectWarnings INTERFACE 
+        -Wall
+        -Wextra
+        -Wno-unused-parameter
+        # -Wold-style-cast
+        -Wnon-virtual-dtor
+        -Woverloaded-virtual
+        -Wdouble-promotion
+        -Wformat=2
+        -Wredundant-decls
+        # -Wconversion
+        -Wvla
+        -Wdouble-promotion
+        -Werror=return-type
+    )
+    # Add or disable warnings depending on if the compiler supports them 
+    # The function checks internally and sets HAS_warning-name
+    sls_enable_cxx_warning("-Wnull-dereference")
+    sls_enable_cxx_warning("-Wduplicated-cond")
+    sls_disable_cxx_warning("-Wclass-memaccess")
+
+    if (CMAKE_CXX_COMPILER_VERSION VERSION_LESS 5 AND "${CMAKE_CXX_COMPILER_ID}" STREQUAL "GNU")
             target_compile_options(slsProjectWarnings INTERFACE 
-                                             -Wno-missing-field-initializers)
+                                                -Wno-missing-field-initializers)
     endif()
-    
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_GREATER 6.0)
-        target_compile_options(slsProjectWarnings INTERFACE 
-                                                -Wno-misleading-indentation # mostly in rapidjson remove using clang format
-                                                -Wduplicated-cond
-                                                -Wnull-dereference )
 
-    endif()
-    if (CMAKE_CXX_COMPILER_VERSION VERSION_GREATER 8.0)
-        target_compile_options(slsProjectWarnings INTERFACE 
-                                                -Wno-class-memaccess )
 
-    endif()
+endif()
+
+
+if (NOT TARGET slsProjectCSettings)
+    #Settings for C code
+    add_library(slsProjectCSettings INTERFACE)
+    target_compile_options(slsProjectCSettings INTERFACE 
+                                                -std=gnu99 #fixed
+                                                -Wall
+                                                -Wextra
+                                                -Wno-unused-parameter
+                                                -Wdouble-promotion
+                                                -Wformat=2
+                                                -Wredundant-decls
+                                                -Wdouble-promotion
+                                                -Werror=return-type
+                                    )
+    sls_disable_c_warning("-Wstringop-truncation")
 endif()
 
 
@@ -154,68 +186,32 @@ if(SLS_TUNE_LOCAL)
 endif()
 
 
-#rapidjson
-add_library(rapidjson INTERFACE)
-target_include_directories(rapidjson INTERFACE
-    $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/libs/rapidjson>  
-)
-
-# Install fake the libraries
-install(TARGETS slsProjectOptions slsProjectWarnings rapidjson
+if(SLS_MASTER_PROJECT)
+install(TARGETS slsProjectOptions slsProjectWarnings 
     EXPORT "${TARGETS_EXPORT_NAME}"
     LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR}
     ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR}
     PUBLIC_HEADER DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
 )
+endif()
 
 set(CMAKE_POSITION_INDEPENDENT_CODE ON)
 set(CMAKE_INSTALL_RPATH $ORIGIN)
-# set(CMAKE_BUILD_WITH_INSTALL_RPATH TRUE)
 set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
 
 
-set(ZeroMQ_HINT "" CACHE STRING "Hint where ZeroMQ could be found")
-#Adapted from: https://github.com/zeromq/cppzmq/
-if (NOT TARGET libzmq)
-    if(ZeroMQ_HINT)
-        message(STATUS "Looking for ZeroMQ in: ${ZeroMQ_HINT}")
-        find_package(ZeroMQ 4 
-            NO_DEFAULT_PATH
-            HINTS ${ZeroMQ_DIR}
-        )
-    else()
-        find_package(ZeroMQ 4 QUIET)
-    endif()
-    
+custom_find_zmq()
 
 
-  # libzmq autotools install: fallback to pkg-config
-  if(NOT ZeroMQ_FOUND)
-    message(STATUS "CMake libzmq package not found, trying again with pkg-config (normal install of zeromq)")
-    list (APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_LIST_DIR}/libzmq-pkg-config)
-    find_package(ZeroMQ 4 REQUIRED)
-  endif()
-
-  # TODO "REQUIRED" above should already cause a fatal failure if not found, but this doesn't seem to work
-  if(NOT ZeroMQ_FOUND)
-    message(FATAL_ERROR "ZeroMQ was not found, neither as a CMake package nor via pkg-config")
-  endif()
-
-  if (ZeroMQ_FOUND AND NOT TARGET libzmq)
-    message(FATAL_ERROR "ZeroMQ version not supported!")
-  endif()
-endif()
-
 if (SLS_USE_TESTS)
     enable_testing()
     add_subdirectory(tests)
 endif(SLS_USE_TESTS)
 
 
-
-
-# Common functionallity to detector and receiver
-add_subdirectory(slsSupportLib)
+if(NOT SLS_EXT_BUILD)
+    add_subdirectory(slsSupportLib)
+endif()
 
 if (SLS_USE_DETECTOR OR SLS_USE_TEXTCLIENT)
     add_subdirectory(slsDetectorSoftware)
@@ -239,7 +235,7 @@ endif (SLS_USE_INTEGRATION_TESTS)
 
 if (SLS_USE_PYTHON)
     find_package (Python 3.6 COMPONENTS Interpreter Development)
-    add_subdirectory(libs/pybind11)
+    add_subdirectory(libs/pybind11  ${CMAKE_BINARY_DIR}/bin/)
     add_subdirectory(python)
 endif(SLS_USE_PYTHON)
 
@@ -259,16 +255,13 @@ if(SLS_BUILD_DOCS)
     add_subdirectory(docs)
 endif(SLS_BUILD_DOCS)
 
-
 if(SLS_USE_MOENCH)
+    add_subdirectory(slsDetectorCalibration/tiffio)
     add_subdirectory(slsDetectorCalibration/moenchExecutables)
 endif(SLS_USE_MOENCH)
 
 if(SLS_MASTER_PROJECT)
-    # Set install dir CMake packages
     set(CMAKE_INSTALL_DIR "share/cmake/${PROJECT_NAME}")
-    # Set the list of exported targets
     set(PROJECT_LIBRARIES slsSupportShared slsDetectorShared slsReceiverShared)
-    # Generate and install package config file and version
     include(cmake/package_config.cmake)
 endif()

COPYING

@@ -0,0 +1,17 @@
+The SLS Detector Package is provided under:
+
+	SPDX-License-Identifier: LGPL-3.0-or-later
+
+Being under the terms of the GNU Lesser General Public License version 3 or later, 
+according with:
+
+	LICENSES/LGPL-3.0
+
+Source code under the Apache 2.0 License have the SPDX Identifier and are 
+according with:
+
+	LICENSES/ThirdParty/Apache-2.0
+
+All contributions to the SLS Detector Package are subject to this COPYING file.
+
+

LICENSES/GPL-3.0

@@ -1,3 +1,17 @@
+Valid-License-Identifier: GPL-3.0
+Valid-License-Identifier: GPL-3.0+
+SPDX-URL: https://spdx.org/licenses/GPL-3.0-or-later.html
+Usage-Guide:
+  To use this license in source code, put one of the following SPDX
+  tag/value pairs into a comment according to the placement
+  guidelines in the licensing rules documentation.
+  For 'GNU Library General Public License (LGPL) version 3.0 only' use:
+    SPDX-License-Identifier: GPL-3.0
+  For 'GNU Library General Public License (LGPL) version 3.0 or any later
+  version' use:
+    SPDX-License-Identifier: GPL-3.0-or-later
+License-Text:
+
                     GNU GENERAL PUBLIC LICENSE
                        Version 3, 29 June 2007
 

LICENSES/LGPL-3.0

@@ -1,3 +1,17 @@
+Valid-License-Identifier: LGPL-3.0
+Valid-License-Identifier: LGPL-3.0+
+SPDX-URL: https://spdx.org/licenses/LGPL-3.0-or-later.html
+Usage-Guide:
+  To use this license in source code, put one of the following SPDX
+  tag/value pairs into a comment according to the placement
+  guidelines in the licensing rules documentation.
+  For 'GNU Library General Public License (LGPL) version 3.0 only' use:
+    SPDX-License-Identifier: LGPL-3.0
+  For 'GNU Library General Public License (LGPL) version 3.0 or any later
+  version' use:
+    SPDX-License-Identifier: LGPL-3.0-or-later
+License-Text:
+
                    GNU LESSER GENERAL PUBLIC LICENSE
                        Version 3, 29 June 2007
 

LICENSES/Third Party/Apache-2.0

@@ -0,0 +1,210 @@
+Valid-License-Identifier: Apache-2.0
+SPDX-URL: https://spdx.org/licenses/Apache-2.0.html
+Usage-Guide:
+  To use this license in source code, put one of the following SPDX
+  tag/value pairs into a comment according to the placement
+  guidelines in the licensing rules documentation.
+    SPDX-License-Identifier: Apache-2.0
+License-Text:
+
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+
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RELEASE.txt

@@ -1,7 +1,7 @@
-SLS Detector Package 6.0.0-rc1 released on 08.10.2021 (Release Candidate 1)
-===========================================================================
+SLS Detector Package Minor Release 7.0.0 released on 25.11.2021
+===============================================================
 
-This document describes the differences between v6.0.0-rc1 and v5.1.0.   
+This document describes the differences between v7.0.0 and v6.x.x   
 
 
 
@@ -9,8 +9,8 @@ This document describes the differences between v6.0.0-rc1 and v5.1.0.
     --------
     1.  New or Changed Features
     2.  Resolved Issues
-    3.  Known Issues
-    4.  Firmware Requirements
+    3.  Firmware Requirements
+    4.  Kernel Requirements
     5.  Download, Documentation & Support
 
 
@@ -19,235 +19,74 @@ This document describes the differences between v6.0.0-rc1 and v5.1.0.
 1. New or Changed Features
 ==========================
 
-    Client 
-    ------
-
-    1.  [Jungfrau] Chip version 
-        Features for chipv1.1 incorporated
-        Command line: chipversion, API: getchipVersion 
-        gets chip version (1.0 or 1.1)
-        chipv1.1 requires config_jungfrau.txt on detector server.
-    
-    2.  [Jungfrau] Chip configuration (only chipv1.1)
-        powering on the chip and changing settings will configure the chip.
-        Hence, required before acquisition.
-
-    3.  [Jungfrau] Settings and Gain mode 
-        Settings can be gain0 and highgain0. Gain mode can be dynamicgain, 
-        forceswitchg1, forceswitchg2, fixg1, fixg2, fixg0. fixg0 must be 
-        used with EXTRA caution as you can damage the detector.
-        Changing settings also changes dac values of 3 dacs () and reconfigures
-        chip (only v1.1)
-
-    4.  [Jungfrau] Storage cells (only chipv1.1)
-        Additional number of storage cells not applicable for chipv1.1.
-        Storage cell start is only allowed from 0 - 3 for chipv1.1 
-        (0 - 15 for chipv1.0).
-    
-    5.  [Gotthard2][Jungfrau] Filter Resistor 
-        Command line: filterresistor, API: getFilterResistor/ setFilterResistor
-        Previous Command: filter, setFilter/ getFilter
-        Set Filter resistor. Increasing values for increasing resistance.
-        [Jungfrau] only for chipv1.1. Options: [0|1]. Default is 1.
-        [Gotthard2] Options: [0|1|2|3]. Default is 0.
-
-    6.  [Jungfrau] Filter cell (only chipv1.1)
-        Command line: filtercell, API: getFilterCell/ setFilterCell
-        Set filter cell. Options: [0-12]. Advanced user command.
-
-    7.  [Jungfrau] Comparator disable time (only chipv1.1)
-        Command line: comp_disable_time, API: getComparatorDisableTime/ 
-        setComparatorDisableTime 
-        One can customize the period to disable comparator.
-
-    8.  [Eiger][Jungfrau] Flip rows
-        Command line: fliprows, API: getFlipRows/ setFlipRows
-        Previous command: flippeddatax, setBottom/ getBottom
-        [Jungfrau] Flips rows in detector only for HW v2.0.
-        slsReceiver and slsDetectorGui will not flip them again.
-        [Eiger] same as before.
-
-    9.  [Eiger][Jungfrau] Read n rows
-        Command line: readnrows, API: getReadNRows/ setReadNRows
-        Previous Command: readnlines, getPartialReadout/ setPartialReadout
-        [Eiger] same as before
-        [Jungfrau] Options: 8 - 512, multiples of 8. Default is 512.
-
-    10. [Gotthard2][Jungfrau] Current source 
-        Command line: currentsource, API: getCurrentSource, setCurrentSource
-        Enable or disable current source. Default is disabled.
-        [Gotthard2] Can only enable or disable.
-        [Jungfrau] Can choose to fix, select source and choose normal or low 
-        current. Normal/ low only for chipv1.1. 
-        Select source is 0-63 for chipv1.0 and a 64 bit mask for chipv1.1. 
-
-    11. Default dac 
-        Command line: defaultdac, API: getDefaultDac/ setDefaultDac
-        change default value of a dac
-        [Jungfrau][Mythen3] Also change default value of dac for particular 
-        setting.
-
-    12. Reset dacs
-        Command line: resetdacs, API: resetToDefaultDacs
-        Previous command: defaultdacs
-        Resets dacs to their default values or hard coded values.
-        
-    13. [Mythen3] Gain Capacitance
-        Command line: gaincaps, API: getGainCaps/ setGainCaps
-        Set various gain capacitances.
-
-    14. [Gotthard2] Veto Streaming from chip
-        Command line: veto, API: getVeto/ setVeto
-        This command used to mean veto streaming from detector. Now, it means
-        veto streaming from chip (New feature). Default is disabled.
-
-    15. [Gotthard2] Veto streaming from detector
-        Command line: vetostream, API: getVetoStream, setVetoStream
-        Options: None, local link interface, 10 10GbE, Both
-        Default: None
-        10GbE (as before) will enable 2 udp interfaces in receiver.
-
-    16. [Gotthard2] Veto algorithm
-        Command line: vetoalg, API: getVetoAlgorithm/ setVetoAlgorithm
-        Set veto algorithm for each interface.
-        Options: hits, raw
-        
-    17. [Eiger][Gotthard2][Mythen3] Module ID
-        Command line: moduleid, API: getModuleId
-        Previous command (Eiger only): serialnumber, getSerialNumber
-        Unique id read from txt file on detector and streamed out in udp header.
-    
-    18. [Gotthard2]
-        Command line: dbitpipeline, API: getDBITPipeline/ setDBITPipeline 
-        Set pipeline to latch digital bits. Options: 0-7
-
-    19. [Eiger][Jungfrau] Round Robin commands
-        Command line, udp_dstlist, API: getDestinationUDPList/ 
-        setDestinationUDPList
-        Round robin commands at the moment does not configure the receiver.
-        Set multiple udp destinations in the detector to stream udp data packets 
-        to. Upto 32 destinations. Refer documentation for details.
-
-        Command line, udp_numdst, API: getNumberofUDPDestinations
-
-        [Jungfrau] Command line, udp_firstdst, API: getFirstUDPDestination/ 
-        setFirstUDPDestination
-    
-    20. Command Line Parsing 
-        Parsing of detector index and module index has been modified to 
-        integrate round robin index.
-        [detector index]-[module index]:[round robin index] [command]
-
-        It is backwards compatible.
-        For ease, one can also execute
-        sls_detector_put [module index] [command]
-
-    21. Clear Udp Destination
-        Command line, udp_cleardst, API: clearUDPDestinations
-        This is useful when changing receivers for a detector or for round robin
-        system.
-
-    22. Shared Memory Naming
-        Shared memory name has been changed to reflect a more appropriate naming 
-        scheme.
-
-    23. [Eiger][Mythen3] Blocking trigger 
-        Command line: blockingtrigger, API: sendSoftwareTrigger
-        Sends software trigger signal to detector and blocks till frames are
-        sent out for that trigger.
-
-    24. [Eiger] Data stream enable for ports
-        Command line: datastream, API: getDataStream/ setDataStream
-        Enable or disable each port. Default: enabled
-
-    25. Changing TCP ports
-        This will only affect shared memory and will not try to change the
-        current tcp port of the control/stop server in detector.
-
-    26. [Eiger][Jungfrau][Gotthard2] Speed 
-        Command line: readoutspeed, readoutspeedlist API: getReadoutSpeed/ setReadoutSpeed /
-        getReadoutSpeedList
-        Previous command: speed, setSpeed/ getSpeed
-        [Eiger][Jungfrau] same as before.
-        [Gotthard2] New command to set readout speed. Options: 108, 144 (in MHz)
-        
-
-    Detector servers
-    ----------------
-
-    1.  [Gotthard2] Bad Channels moved to a new register, default settings 
-        including clock frequency changed
-
-    2.  [Gotthard2] Updated config file in detector server
-    
-
-    Virtual servers
-    ----------------
-
-    1.  Artifical pixel values increasing by every packet, instead of every pixel.
-
-    2.  All possible features updated.
-
-
-    Receiver
-    --------
-
-    1.  Frames caught in metadata
-        Frames caught by the master receiver is added to master file metadata.
-        Hdf5 and Binary version numbers changed to 6.3
-
-    2.  Removed Padding option for Deactivated half modules.
-
-    3.  Changing Receiver TCP ports
-        This will only affect shared memory and will not try to change the
-        current tcp port of the receiver.
-
-    Gui
-    ----
-
-    1. [Mythen3] counters added in settings tab
-
+- Fixed minor warnings (will fix commandline print of excess packets for missing packets)
+- ctb slow adcs and any other adcs (other than temp) goes to the control Server
+- number of udp interfaces is 2 for Eiger (CHANGE IN API??)
+- added module id for virtual servers into the udp header
+- refactoring (rxr)
+- fixed patsetbit and patsetmask for moench
+- changed default vref of adc9257 to 2V for moench (from 1.33V)
+- moench and ctb - can set the starting frame number of next acquisition
+- mythen server kernel check incompatible (cet timezone)
+- rx_arping
+- rx_threadsids max is now 9 (breaking api)
+- fixed datastream disabling for eiger. Its only available in 10g mode.
+- m3 server crash (vthrehsold dac names were not provided)
+- allow vtrim to be interpolated for Eiger settings
+- m3 setThresholdEnergy and setAllThresholdEnergy was overwriting gaincaps with settings enum
+- can set localhost with virtual server with minimum configuration: (hostname localhost, rx_hostname localhost, udp_dstip auto)
+- increases the progress according to listened index. (not processed index)
+- current frame index points to listened frame index (not processed index)
+- when in discard partial frames or empty mode, the frame number doesnt increase by 1, it increases to that number (so its faster)
+- file write disabled by default
+- eiger 12 bit mode
+- start non blocking acquisition at modular level
+- connect master commands to api (allow set master for eiger)
+--ignore-config command line
+- command line argument 'master' mainly for virtual servers (also master/top for real eiger), only one virtual server for eiger, use command lines for master/top
+- stop servers also check for errors at startup( in case it was running with an older version)
+- hostname cmd failed when connecting to servers in update mode (ctb, moench, jungfrau, eiger)
+- missingpackets signed (negative => extra packets)
+- framescaught and frameindex now returns a vector for each port
+- progress looks at activated or enabled ports, so progress does not stagnate
+- (eiger) disable datastreaming also for virtual servers only for 10g
+- missing packets also takes care of disabled ports
+- added geometry to metadata
+- 10g eiger nextframenumber get fixed.
+- stop, able to set nextframenumber to a consistent (max + 1) for all modules if different (eiger/ctb/jungfrau/moench)
+- ctb: can set names for all the dacs
+- fpga/kernel programming, checks if drive is a special file and not a normal file
+- gotthard 25 um image reconstructed in gui and virtual hdf5 (firmware updated for slave to reverse channels)
+- master binary file in json format now
+- fixed bug introduced in 6.0.0: hdf5 files created 1 file per frame after the initial file which had maxframesperfile
+- rx_roi
+- m3 polarity, interpolation (enables all counters when enabled), pump probe, analog pulsing, digital pulsing
+- updatedetectorserver - removes old server current binary pointing to for blackfin
+- removing copydetectorserver using tftp 
+- registerCallBackRawDataReady and registerCallBackRawDataModifyReady now gives a sls_receiver_header* instead of a char*, and uint32_t to size_t
+- registerCallBackStartAcquisition gave incorrect imagesize (+120 bytes). corrected.
+- registerCallBackStartAcquisition parameter is a const string reference
+- m3 (runnig config second time with tengiga 0, dr !=32, counters !=0x7) calculated incorrect image size expected
+- fixed row column indexing (mainly for multi module Jungfrau 2 interfaces )
+- eiger gui row indices not flipped anymore (fix in config)
+- m3 (settings dac check disabled temporarily?)
+- m3 virtual server sends the right pacets now
+- gap pixels in gui enabled by default
+- rxr src files and classes (detectordata, ZmqSocket, helpDacs) added to sls namespace, and macros (namely from logger (logINFO etc)), slsDetectorGui (make_unique in implemtnation requires sls nemspace (points to std otherwise) but not deectorImpl.cpp)
+- blackfin programing made seamless (nCE fixed which helps)
+-save settings file for m3 and eiger
+- m3 threshold changes
+- g2 and m3 clkdiv 2 (system clock) change should affect time settings (g2: exptime, period, delayaftertrigger, burstperiod, m3: exptime, gatedelay, gateperiod, period, delayaftertrigger)
+- g2 system frequency is the same irrespective of timing source
+- (apparently) rxr doesnt get stuck anymore from 6.1.1
+- rxr mem size changed (fifo header size from 8 to 16) due to sls rxr header = 112.. 112+ 16=128 (reduces packet losss especially for g2)
+-udp_srcip and udp_Srcip2: can set to auto (for virtual or 1g data networks)
+- set dataset name for all hdf5 files to "data" only
+- number of storage cells is not updated in teh receiver. done. and also allowing it to be modified in running status
 
 2. Resolved Issues
 ==================
 
-    Detector Servers
-    ----------------
-
-    1.  [Gotthard2] Tolerance in time parameters. 
-        Eg. 220 ns was being set to 215 ns, instead of 222ns.
-
-    2.  [Jungfrau] Stopping in trigger mode and then switching to auto timing mode 
-        blocks data streaming from detector. Workaround fix made in 
-        detector server to reset core until next firmware release.
-
-    3.  [Jungfrau][CTB][Moench][Gotthard][Gotthard2][Mythen3] Firmware Programming
-        Firmware programming incorporates more validations such as checksum of 
-        program. Always ensure client and server are of same release before 
-        programming firmware.
-
-    4.  [Eiger] Stop sends last frame
-        Stop acquisition will now also send out all complete frames in fifo.
-
-    5.  [Eiger] Bottom not rotated in quad mode. Fixed.
-
-    6.  [Mythen3] counter mask effect on vthreshold
-        Setting counter mask changes vth daac values (ie. disabling sets to 2800),
-        vthreshold only changes for enabled counters, setting vth overwrites
-        dac even if counter disabled and when counters enabled, remembers set 
-        values.
-    
-    7.  [Eiger] fast quad fix for loading trimbits
-    
-    Receiver
-    --------
-
-    1.  Disabled port or deactivated (half) modules will not create files.
-
-
-- better control of what is built (PR)?
-- cmake package has hardcoded path to zeromq library
-
 
 3. Firmware Requirements
 ========================
@@ -268,11 +107,11 @@ This document describes the differences between v6.0.0-rc1 and v5.1.0.
 
     Mythen3
     =======
-    Compatible version : 10.09.2021 (development)
+    Compatible version : 10.09.2021 (v1.1)
 
     Gotthard2
     =========
-    Compatible version : 27.05.2021 (v1.0)
+    Compatible version : 27.05.2021 (v0.1)
 
     Moench
     ======
@@ -284,7 +123,6 @@ This document describes the differences between v6.0.0-rc1 and v5.1.0.
 
     Detector Upgrade
     ================
-
     The following can be upgraded remotely:
     Eiger      via bit files
     Jungfrau   via command <.pof>
@@ -303,25 +141,34 @@ This document describes the differences between v6.0.0-rc1 and v5.1.0.
 
 
 
+4. Kernel Requirements
+======================
 
+    Blackfin 
+    ========
+    Latest version: Fri Oct 29 00:00:00 2021
+    
+    Older ones will work, but might have issues with programming firmware via
+    the package.
 
-5. Known Issues
-===============
+    Nios
+    ====
+    Compatible version: Mon May 10 18:00:21 CEST 2021
 
-    Receiver
-    --------
-    1.  It does not handle readnrows or partial readout. Only the summary
-        is adjusted to print in red. However, it will still write complete
-        images with missing data padded. Roi will be implemented in future
-        that can be complimented with this feature to remove the additional
-        data in files.
+    Kernel Upgrade
+    ==============
+    Eiger   via bit files
+    Others  via command
 
-    2.  Round robin is not implemented in receiver side, ie. one cannot configure
-        more than 1 receiver at a time. This will/might be done in the future.
+    Commands: udpatekernel, kernelversion
+    Instructions available at
+        https://slsdetectorgroup.github.io/devdoc/commandline.html
+        https://slsdetectorgroup.github.io/devdoc/detector.html
+        https://slsdetectorgroup.github.io/devdoc/pydetector.html
 
 
 
-6. Download, Documentation & Support
+5. Download, Documentation & Support
 ====================================
 
     Download

cmake/SlsAddFlag.cmake

@@ -0,0 +1,64 @@
+include(CheckCXXCompilerFlag)
+include(CheckCCompilerFlag)
+
+
+function(enable_cxx_warning flag target)
+    string(REPLACE "-W" "HAS_" flag_name ${flag})
+    check_cxx_compiler_flag(${flag} ${flag_name})
+    if(${flag_name})
+        target_compile_options(${target} INTERFACE ${flag})
+        message(STATUS "Adding: ${flag} to ${target}")
+    else()
+        message(STATUS "Flag: ${flag} not supported")
+    endif()
+endfunction()
+
+function(enable_c_warning flag target)
+    string(REPLACE "-W" "HAS_" flag_name ${flag})
+    check_c_compiler_flag(${flag} ${flag_name})
+    if(${flag_name})
+        target_compile_options(${target} INTERFACE ${flag})
+        message(STATUS "Adding: ${flag} to ${target}")
+    else()
+        message(STATUS "Flag: ${flag} not supported")
+    endif()
+endfunction()
+
+
+function(disable_cxx_warning flag target)
+    string(REPLACE "-W" "HAS_" flag_name ${flag})
+    check_cxx_compiler_flag(${flag} ${flag_name})
+
+    if(${flag_name})
+        string(REPLACE "-W" "-Wno-" neg_flag ${flag})
+        message(STATUS "Adding: ${neg_flag} to ${target}")
+        target_compile_options(${target} INTERFACE ${neg_flag})
+    else()
+        message(STATUS "Warning: ${flag} not supported no need to disable")
+    endif()
+endfunction()
+
+function(disable_c_warning flag target)
+    string(REPLACE "-W" "HAS_" flag_name ${flag})
+    check_c_compiler_flag(${flag} ${flag_name})
+    if(${flag_name})
+        string(REPLACE "-W" "-Wno-" neg_flag ${flag})
+        message(STATUS "Adding: ${neg_flag} to ${target}")
+        target_compile_options(${target} INTERFACE ${neg_flag})
+    else()
+        message(STATUS "Warning: ${flag} not supported no need to disable")
+    endif()
+endfunction()
+
+
+function(sls_disable_c_warning flag)
+    disable_c_warning(${flag} slsProjectCSettings)
+endfunction()
+
+function(sls_enable_cxx_warning flag)
+    enable_cxx_warning(${flag} slsProjectWarnings)
+endfunction()
+
+function(sls_disable_cxx_warning flag)
+    disable_cxx_warning(${flag} slsProjectWarnings)
+endfunction()

cmake/SlsFindZeroMQ.cmake

@@ -0,0 +1,38 @@
+function(custom_find_zmq)
+    set(ZeroMQ_HINT "" CACHE STRING "Hint where ZeroMQ could be found")
+    #Adapted from: https://github.com/zeromq/cppzmq/
+    if (NOT TARGET libzmq)
+        if(ZeroMQ_HINT)
+            message(STATUS "Looking for ZeroMQ in: ${ZeroMQ_HINT}")
+            find_package(ZeroMQ 4 
+                NO_DEFAULT_PATH
+                HINTS ${ZeroMQ_HINT}
+            )
+        else()
+            find_package(ZeroMQ 4 QUIET)
+        endif()
+        
+    # libzmq autotools install: fallback to pkg-config
+    if(ZeroMQ_FOUND)
+        message(STATUS "Found libzmq using find_package")
+    else()
+        message(STATUS "CMake libzmq package not found, trying again with pkg-config (normal install of zeromq)")
+        list (APPEND CMAKE_MODULE_PATH ${CMAKE_CURRENT_LIST_DIR}/cmake/libzmq-pkg-config)
+        find_package(ZeroMQ 4 REQUIRED)
+    endif()
+
+    # TODO "REQUIRED" above should already cause a fatal failure if not found, but this doesn't seem to work
+    if(NOT ZeroMQ_FOUND)
+        message(FATAL_ERROR "ZeroMQ was not found, neither as a CMake package nor via pkg-config")
+    endif()
+
+    if (ZeroMQ_FOUND AND NOT TARGET libzmq)
+        message(FATAL_ERROR "ZeroMQ version not supported!")
+    endif()
+    endif()
+
+    get_target_property(VAR libzmq IMPORTED_LOCATION)
+    message(STATUS "Using libzmq: ${VAR}")
+
+
+endfunction()

cmake/libzmq-pkg-config/FindZeroMQ.cmake

@@ -0,0 +1,36 @@
+#From: https://github.com/zeromq/cppzmq/
+set(PKG_CONFIG_USE_CMAKE_PREFIX_PATH ON)
+find_package(PkgConfig)
+pkg_check_modules(PC_LIBZMQ QUIET libzmq)
+
+set(ZeroMQ_VERSION ${PC_LIBZMQ_VERSION})
+
+find_path(ZeroMQ_INCLUDE_DIR zmq.h
+        PATHS ${ZeroMQ_DIR}/include
+        ${PC_LIBZMQ_INCLUDE_DIRS}
+)
+
+find_library(ZeroMQ_LIBRARY
+        NAMES zmq
+        PATHS ${ZeroMQ_DIR}/lib
+        ${PC_LIBZMQ_LIBDIR}
+        ${PC_LIBZMQ_LIBRARY_DIRS}
+)
+
+if(ZeroMQ_LIBRARY OR ZeroMQ_STATIC_LIBRARY)
+    set(ZeroMQ_FOUND ON)
+    message(STATUS "Found libzmq using PkgConfig")
+endif()
+
+set ( ZeroMQ_LIBRARIES ${ZeroMQ_LIBRARY} )
+set ( ZeroMQ_INCLUDE_DIRS ${ZeroMQ_INCLUDE_DIR} )
+
+if (NOT TARGET libzmq)
+    add_library(libzmq UNKNOWN IMPORTED)
+    set_target_properties(libzmq PROPERTIES
+            IMPORTED_LOCATION ${ZeroMQ_LIBRARIES}
+            INTERFACE_INCLUDE_DIRECTORIES ${ZeroMQ_INCLUDE_DIRS})
+endif()
+
+include ( FindPackageHandleStandardArgs )
+find_package_handle_standard_args ( ZeroMQ DEFAULT_MSG ZeroMQ_LIBRARIES ZeroMQ_INCLUDE_DIRS )

cmake/package_config.cmake

@@ -26,7 +26,7 @@ install(FILES
 )
 
 install(FILES
-  "${CMAKE_SOURCE_DIR}/libzmq-pkg-config/FindZeroMQ.cmake"
+  "${CMAKE_SOURCE_DIR}/cmake/libzmq-pkg-config/FindZeroMQ.cmake"
   COMPONENT devel
   DESTINATION ${CMAKE_INSTALL_DIR}/libzmq-pkg-config
 )

cmk.sh

@@ -1,4 +1,6 @@
 #!/bin/bash
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 CMAKE="cmake3"
 BUILDDIR="build"
 INSTALLDIR=""

conda-recepie/build.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 mkdir build
 mkdir install

conda-recepie/build_pylib.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 echo "|<-------- starting python build"
 cd python

conda-recepie/conda_build_config.yaml

@@ -3,6 +3,7 @@ python:
     - 3.7
     - 3.8
     - 3.9
+    - 3.10
     
 numpy: 
-    - 1.17
+    - 1.17

conda-recepie/copy_ctbgui.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 mkdir $PREFIX/lib
 mkdir $PREFIX/bin
 mkdir $PREFIX/include

conda-recepie/copy_gui.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 #Copy the GUI 
 mkdir -p $PREFIX/bin
 cp build/install/bin/slsDetectorGui $PREFIX/bin/.

conda-recepie/copy_lib.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 mkdir -p $PREFIX/lib
 mkdir -p $PREFIX/bin
@@ -17,4 +19,4 @@ cp build/install/bin/slsMultiReceiver $PREFIX/bin/.
 
 
 cp build/install/include/sls/* $PREFIX/include/sls
-cp -r build/install/share/ $PREFIX/share
+cp -rv build/install/share $PREFIX

conda-recepie/copy_moench.sh

@@ -1,4 +1,6 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
+
 #Copy the Moench executables 
 mkdir -p $PREFIX/bin
-cp build/install/bin/moench04ZmqProcess $PREFIX/bin/.
-cp build/install/bin/moenchZmqProcess $PREFIX/bin/.
+cp build/install/bin/moench* $PREFIX/bin/.

conda-recepie/run_test.sh

@@ -1 +1,3 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 ctest -j2

ctbGui/CMakeLists.txt

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 find_package(ROOT CONFIG REQUIRED  COMPONENTS Core Gui)
@@ -32,7 +34,7 @@ add_executable(ctbGui
     ctbAdcs.cpp
     ctbPattern.cpp
     ctbAcquisition.cpp
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/tiffIO.cpp
+    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/tiffio/src/tiffIO.cpp
 )
 
 
@@ -41,6 +43,7 @@ target_include_directories(ctbGui PRIVATE
     ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/dataStructures
     ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/interpolations
     ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/
+    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/tiffio/include/
 )
 
 # Headders needed for ROOT dictionary generation
@@ -59,7 +62,6 @@ set( HEADERS
 #set(ROOT_INCLUDE_PATH ${CMAKE_CURRENT_SOURCE_DIR})
 
 # ROOT dictionary generation 
-include("${ROOT_DIR}/RootMacros.cmake")
 root_generate_dictionary(ctbDict ${HEADERS} LINKDEF ctbLinkDef.h)
 add_library(ctbRootLib SHARED ctbDict.cxx)
 target_include_directories(ctbRootLib PUBLIC ${CMAKE_CURRENT_SOURCE_DIR})
@@ -84,4 +86,5 @@ target_link_libraries(ctbGui PUBLIC
 set_target_properties(ctbGui PROPERTIES
     RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
 
-)
+)
+

ctbGui/Makefile.root5

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 INCS=ctbMain.h ctbDacs.h   ctbPattern.h  ctbSignals.h  ctbAdcs.h ctbAcquisition.h ctbPowers.h   ctbSlowAdcs.h 

ctbGui/Makefile.root6

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 INCS=ctbMain.h ctbDacs.h   ctbPattern.h  ctbSignals.h  ctbAdcs.h ctbAcquisition.h ctbPowers.h   ctbSlowAdcs.h  

ctbGui/ctbAcquisition.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 //#define TESTADC
 
 
@@ -826,14 +828,14 @@ void ctbAcquisition::setCanvas(TCanvas* c) {
   myCanvas->AddExec("dynamic",Form("((ctbAcquisition*)%p)->canvasClicked()",this));
   // myCanvas->AddExec("ex","canvasClicked()");
 }
-void ctbAcquisition::dataCallback(detectorData *data, long unsigned int index, unsigned int dum, void* pArgs) {
+void ctbAcquisition::dataCallback(sls::detectorData *data, long unsigned int index, unsigned int dum, void* pArgs) {
 
   // return 
   ((ctbAcquisition*)pArgs)->plotData(data,index);
 }
 
 
-int ctbAcquisition::plotData(detectorData *data, int index) {
+int ctbAcquisition::plotData(sls::detectorData *data, int index) {
 
   /*
 ******************************************************************

ctbGui/ctbAcquisition.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef CTBACQUISITION_H
 #define CTBACQUISITION_H
 #include  <TGFrame.h>
@@ -26,8 +28,8 @@ class TGTextButton;
 namespace sls
 {
    class Detector;
+   class detectorData;
 };
-class detectorData;
 
 template <class dataType> class slsDetectorData;
 
@@ -199,10 +201,10 @@ class ctbAcquisition : public TGGroupFrame {
    void setBitGraph (int i ,int en, Pixel_t col);
    void startAcquisition();
    static   void progressCallback(double,void*);
-   static void dataCallback(detectorData*, long unsigned int, unsigned int,  void*);
+   static void dataCallback(sls::detectorData*, long unsigned int, unsigned int,  void*);
    int StopFlag;
    
-   int plotData(detectorData*, int);
+   int plotData(sls::detectorData*, int);
 
    void setPatternFile(const char* t);
 

ctbGui/ctbAdcs.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <TApplication.h>
 #include <TGClient.h>
 #include <TCanvas.h>

ctbGui/ctbAdcs.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 

ctbGui/ctbDacs.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 #include <stdio.h>
 #include <iostream>

ctbGui/ctbDacs.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 #ifndef CTBDACS_H

ctbGui/ctbDefs.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #pragma once
 
 #include <string>

ctbGui/ctbGui.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <TApplication.h>
 #include <TColor.h>
 

ctbGui/ctbLinkDef.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #pragma link C++ class ctbMain;
 #pragma link C++ class ctbDacs;
 #pragma link C++ class ctbDac;

ctbGui/ctbMain.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <TApplication.h>
 #include <TGClient.h>
 #include <TCanvas.h>

ctbGui/ctbMain.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef CTBMAIN_H
 #define CTBMAIN_H
 #include <TGFrame.h>

ctbGui/ctbPattern.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <TApplication.h>
 #include <TGClient.h>
 #include <TCanvas.h>

ctbGui/ctbPattern.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef CTBPATTERN_H
 #define CTBPATTERN_H
 #include  <TGFrame.h>

ctbGui/ctbPowers.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include  <TGFrame.h>
 
 

ctbGui/ctbPowers.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef CTBPOWERS_H
 #define CTBPOWERS_H
 

ctbGui/ctbSignals.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include <TApplication.h>
 #include <TGClient.h>
 #include <TCanvas.h>

ctbGui/ctbSignals.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #ifndef CTBSIGNALS_H
 #define CTBSIGNALS_H
 #include  <TGFrame.h>

ctbGui/ctbSlowAdcs.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 #include <stdio.h>
 #include <iostream>

ctbGui/ctbSlowAdcs.h

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 #ifndef CTBSLOWADCS_H

ctbGui/patternGenerator/deserializer.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 #include <stdlib.h>  
 #include <stdint.h>  

ctbGui/patternGenerator/generate.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 if [ "$#" -eq 0 ]; then
     echo "Wrong number of arguments: usage should be $0 patname"
     exit 1
@@ -19,9 +21,10 @@ fi
 
 if [ -f "$infile" ]
 then
-gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c ; 
+dir=$(dirname $infile)
+gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c -I$dir; 
 echo compiling
-echo gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c ; 
+echo gcc -DINFILE="\"$infile\"" -DOUTFILE="\"$outfile\""  -DOUTFILEBIN="\"$outfilebin\"" -o $exe generator.c  -I$dir; 
 $exe ; 
 echo cleaning
 rm $exe

ctbGui/patternGenerator/generator.c

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 /****************************************************************************
 usage to generate a patter test.pat from test.p
 
@@ -67,14 +69,14 @@ void setoutput(int bit) {
   mask=mask<<bit;
   iopat |= mask;
 }
-
+/*
 void setclk(int bit) {
   uint64_t mask=1;
   mask=mask<<bit;
   iopat |= mask;
   clkpat |= mask;
 }
-
+*/
 void clearbit(int bit){
   uint64_t mask=1;
   mask=mask<<bit;
@@ -155,7 +157,7 @@ main(void) {
 #include INFILE
 
   fprintf(fd,"patioctrl 0x%016llx\n",iopat);
-  fprintf(fd,"patclkctrl 0x%016llx\n",clkpat);
+  //fprintf(fd,"patclkctrl 0x%016llx\n",clkpat);
   fprintf(fd,"patlimits 0x%04x 0x%04x\n",start, stop);
 
   for (iloop=0; iloop<MAXLOOPS; iloop++) {

docs/CMakeLists.txt

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 find_package(Doxygen REQUIRED)
 find_package(Sphinx REQUIRED)
 

docs/src/dependencies.rst

@@ -34,6 +34,12 @@ Python bindings
  * pybind11 (packaged in libs/)
 
 
+-----------------------
+Moench executables
+-----------------------
+
+ * libtiff
+
 -----------------------
 Documentation
 -----------------------

docs/src/firmware.rst

@@ -1,8 +1,6 @@
 Firmware Upgrade
 =================
 
-
-
 Eiger
 -------------
 
@@ -18,30 +16,9 @@ Upgrade
 ^^^^^^^^
 #. Tftp must be already installed on your pc to use the bcp script.
 
-#. Kill the on-board servers and copy new servers to the board. 
+#. Copy new servers to the board. See :ref:`how to upgrade detector servers<Detector Server Upgrade>` for more detals. A reboot should have started the new linked servers automatically. For Eiger, do not reboot yet as we need to program the firmware via bit files.
 
-    .. code-block:: bash
-
-        # Option 1: from detector console
-        # kill old server
-        ssh root@bebxxx
-        killall eigerDetectorServer
-
-        # copy new server
-        cd executables
-        scp user@pc:/path/eigerDetectorServerxxx .
-        chmod 777 eigerDetectorServerxxx
-        ln -sf eigerDetectorServerxxx eigerDetectorServer
-        sync
-
-        # Options 2: from client console for multiple modules
-        for i in bebxxx bebyyy;
-        do ssh root@$i killall eigerDetectorServer;
-        scp eigerDetectorServerxxx root@$i:~/executables/eigerDetectorServer;
-        ssh root@$i sync; done
-
-
-    * This is crucial when registers between firmwares change. Failure to do so will result in linux on boards to crash and boards can't be pinged anymore.
+    * This step is crucial when registers between firmwares change. Failure to do so will result in linux on boards to crash and boards can't be pinged anymore.
 
 #. Bring the board into programmable mode using either of the 2 ways. Both methods result in only the central LED blinking.
     
@@ -50,8 +27,13 @@ Upgrade
         Do a hard reset for each half module on back panel boards, between the LEDs, closer to each of the 1G ethernet connectors. Push until all LEDs start to blink.
     
     * Software:  
+
         .. code-block:: bash
 
+            # Option 1: if the old server is still running:
+            sls_detector_put execcommand "./boot_recovery"
+
+            # Option 2:
             ssh root@bebxxx
             cd executables
             ./boot_recovery
@@ -79,11 +61,24 @@ Upgrade
         #update front right fpga
         bcp download.bit bebxxx:/febr
 
-        #update kernel (only if required by the SLS Detector Group)
+        #update kernel (only if required by us)
         bcp download.bit bebxxx:/kernel
 
 #. Reboot the detector.
 
+    .. code-block:: bash
+
+        # In the first terminal where we saw "Succeess"
+        # reconfig febX is necessary only if you have flashed a new feb firmware
+        reconfig febl
+        reconfig febr
+        # will reboot controller
+        reconfig fw0
+
+.. note :: 
+
+    If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
+
 Jungfrau
 -------------
 
@@ -94,75 +89,26 @@ Download
 - `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
 
 
-Upgrade (from v4.x.x)
-^^^^^^^^^^^^^^^^^^^^^^
+Upgrade
+^^^^^^^^
 
-Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
+.. note :: 
 
-#. Tftp must be installed on pc.
+    These instructions are for upgrades from v5.0.0. For earlier versions, contact us.
 
-#. Update client package to the latest (5.x.x).
-
-#. Disable server respawning or kill old server
-    .. code-block:: bash
-
-        # Option 1: if respawning enabled
-        telnet bchipxxx
-        # edit /etc/inittab
-        # comment out line #ttyS0::respawn:/jungfrauDetectorServervxxx
-        reboot
-        # ensure servers did not start up after reboot
-        telnet bchipxxx
-        ps
-
-        #  Option 2: if respawning already disabled
-        telnet bchipxxx
-        killall jungfrauDetectorServerv*
-
-#. Copy new server and start in update mode
-    .. code-block:: bash
-
-        tftp pcxxx -r jungfrauDetectorServervxxx -g
-        chmod 777 jungfrauDetectorServervxxx
-        ./jungfrauDetectorServervxxx -u
-
-#. Program fpga from the client console
-    .. code-block:: bash
-
-        sls_detector_get free
-        # Crucial that the next command executes without any errors
-        sls_detector_put hostname bchipxxx
-        sls_detector_put programfpga xxx.pof
-
-#. After programming, kill 'update server' using Ctrl + C in server console.
-
-#. Enable server respawning if needed
-    .. code-block:: bash
-
-        telnet bchipxxx
-        # edit /etc/inittab
-        # uncomment out line #ttyS0::respawn:/jungfrauDetectorServervxxx
-        # ensure the line has the new server name
-        reboot
-        # ensure both servers are running using ps
-        jungfrauDetectorServervxxx
-        jungfrauDetectorServervxxx --stop-server 1953
-
-
-Upgrade (from v5.0.0)
-^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
 
 Always ensure that the client and server software are of the same release.
 
 
-#. Program from console
+Program from console
     .. code-block:: bash
 
-        # copies server from tftp folder of pc, programs fpga,
-        # removes old server from respawn, sets up new server to respawn
-        # and reboots
+        # copies server from tftp folder of pc, links new server to jungfrauDetectorServer, 
+        # removes old server from respawn, sets up new lnked server to respawn
+        # programs fpga,
+        # reboots
         sls_detector_put update jungfrauDetectorServervxxx pcxxx xx.pof
 
         # Or only program firmware
@@ -170,8 +116,8 @@ Always ensure that the client and server software are of the same release.
 
 
 
-Gotthard
----------
+Gotthard I
+-----------
 
 Download 
 ^^^^^^^^^^^^^
@@ -186,7 +132,7 @@ Upgrade
 ^^^^^^^^
 .. warning ::
     | Gotthard firmware cannot be upgraded remotely and requires the use of USB-Blaster.
-    | It is generally updated by the SLS Detector group.
+    | It is generally updated by us.
 
 #. Download `Altera Quartus software or Quartus programmer <https://fpgasoftware.intel.com/20.1/?edition=standard&platform=linux&product=qprogrammer#tabs-4>`__.
    
@@ -197,7 +143,7 @@ Upgrade
 
 #. Plug the end of your USB-Blaster with the adaptor provided to the connector 'AS config' on the Gotthard board.
 
-#. Click on 'Add file'. Select programming (pof) file provided by the SLS Detector group.
+#. Click on 'Add file'. Select programming (pof) file provided by us.
 
 #. Check "Program/Configure" and "Verify". Push the start button. Wait until the programming process is finished.
 
@@ -206,68 +152,69 @@ Upgrade
 #. Reboot the detector.
 
 
-Mythen3
--------
+Mythen III
+-----------
 
 .. note :: 
 
-  As it is still in developement, the rbf files must be picked up from the SLS Detector Group.
+  As it is still in development, the rbf files must be picked up from us.
 
 Download 
 ^^^^^^^^^^^^^
 
 - detector server corresponding to package in slsDetectorPackage/serverBin
 
-- rbf files (in developement)
+- `rbf files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
 
 
-Upgrade (from v5.0.0)
-^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Upgrade
+^^^^^^^^
 
 Always ensure that the client and server software are of the same release.
 
-#. Program from console
+Program from console
     .. code-block:: bash
 
-        # copies server from tftp folder of pc, programs fpga,
-        # and reboots (new server not respawned currently)
+        # copies server from tftp folder of pc, links new server to mythen3DetectorServer, 
+        # programs fpga,
+        # reboots
         sls_detector_put update mythen3DetectorServervxxx pcxxx xxx.rbf
 
         # Or only program firmware
         sls_detector_put programfpga xxx.rbf
 
-
-
-Gotthard2
--------------
-
 .. note :: 
 
-  As it is still in developement, the rbf files must be picked up from the SLS Detector Group.
+    If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
+
+Gotthard II
+-------------
 
 Download 
 ^^^^^^^^^^^^^
 - detector server corresponding to package in slsDetectorPackage/serverBin
 
-- rbf files (in development)
+- `rbf files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
 
-
-Upgrade (from v5.0.0)
-^^^^^^^^^^^^^^^^^^^^^^^^^^
+Upgrade
+^^^^^^^^
 
 Always ensure that the client and server software are of the same release.
 
-#. Program from console
+Program from console
     .. code-block:: bash
 
-        # copies server from tftp folder of pc, programs fpga,
-        # and reboots (new server not respawned currently)
+        # copies server from tftp folder of pc, links new server to gotthard2DetectorServer, 
+        # programs fpga,
+        # reboots
         sls_detector_put update gotthard2DetectorServervxxx pcxxx xxx.rbf
 
         # Or only program firmware
         sls_detector_put programfpga xxx.rbf
 
+.. note :: 
 
+    If the detector servers did not start up automatically after reboot, you need to add scripts to do that. See :ref:`Automatic start<Automatic start servers>` for more details.
 
 Moench
 -------
@@ -279,19 +226,21 @@ Download
 - `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
 
 
-Upgrade (from v5.0.0)
-^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Upgrade
+^^^^^^^^
 
 Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
 
 Always ensure that the client and server software are of the same release.
 
-#. Program from console
+Program from console
     .. code-block:: bash
 
-        # copies server from tftp folder of pc, programs fpga,
-        # removes old server from respawn, sets up new server to respawn
-        # and reboots
+        # copies server from tftp folder of pc, links new server to moenchDetectorServer, 
+        # removes old server from respawn, sets up new lnked server to respawn
+        # programs fpga,
+        # reboots
         sls_detector_put update moenchDetectorServervxxx pcxxx xx.pof
 
         # Or only program firmware
@@ -307,19 +256,21 @@ Download
 - `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
 
 
-Upgrade (from v5.0.0)
-^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Upgrade
+^^^^^^^^
 
 Check :ref:`firmware troubleshooting <blackfin firmware troubleshooting>` if you run into issues while programming firmware.
 
 Always ensure that the client and server software are of the same release.
 
-#. Program from console
+Program from console
     .. code-block:: bash
 
-        # copies server from tftp folder of pc, programs fpga,
-        # removes old server from respawn, sets up new server to respawn
-        # and reboots
+        # copies server from tftp folder of pc, links new server to ctbDetectorServer, 
+        # removes old server from respawn, sets up new lnked server to respawn
+        # programs fpga,
+        # reboots
         sls_detector_put update ctbDetectorServervxxx pcxxx xx.pof
 
         # Or only program firmware
@@ -354,43 +305,53 @@ Firmware Troubleshooting with blackfin
 
 5. If one can't list it, read the next section to try to get the blackfin to list it.
 
-How to get back mtd3 drive remotely (copying new kernel)
+How to get back mtd3 drive remotely (udpating kernel)
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+    You have 2 alternatives to update the kernel.
 
-  .. code-block:: bash
-    
-    # step 1: get the kernel image (uImage.lzma) from slsdetectorgroup
-    # and copy it to pc's tftp folder
+    1. Commands via software (>= v6.0.0)
 
-    # step 2: connect to the board
-    telnet bchipxxx
+        .. code-block:: bash
 
-    #step 3: go to directory for space
-    cd /var/tmp/
+            sls_detector_put updatekernel /home/...path-to-kernel-image
 
-    # step 3: copy kernel to board
-    tftp pcxxx -r uImage.lzma -g
 
-    # step 4: verify kernel copied properly
-    ls -lrt
-    
-    # step 5: erase flash
-    flash_eraseall /dev/mtd1
-    
-    # step 6: copy new image to kernel drive
-    cat uImage.lzma > /dev/mtd1
-    
-    # step 7:
-    sync
-    
-    # step 8:
-    reboot
-    
-    # step 9: verification
-    telnet bchipxxx
-    uname -a # verify kernel date
-    more /proc/mtd # verify mtd3 is listed
+    2. or command line 
     
+        .. code-block:: bash
+            
+            # step 1: get the kernel image (uImage.lzma) from slsdetectorgroup
+            # and copy it to pc's tftp folder
+
+            # step 2: connect to the board
+            telnet bchipxxx
+
+            #step 3: go to directory for space
+            cd /var/tmp/
+
+            # step 3: copy kernel to board
+            tftp pcxxx -r uImage.lzma -g
+
+            # step 4: verify kernel copied properly
+            ls -lrt
+            
+            # step 5: erase flash
+            flash_eraseall /dev/mtd1
+            
+            # step 6: copy new image to kernel drive
+            cat uImage.lzma > /dev/mtd1
+            
+            # step 7:
+            sync
+            
+            # step 8:
+            reboot
+            
+            # step 9: verification
+            telnet bchipxxx
+            uname -a # verify kernel date
+            more /proc/mtd # verify mtd3 is listed
+            
 
 Last Resort using USB Blaster
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

docs/src/gendoc.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 /**
  * Utility program to generate input files for the command line
  * documentation. Uses the string returned from sls_detector_help cmd
@@ -43,6 +45,7 @@ int main() {
 
     for (const auto &cmd : commands) {
         std::ostringstream os;
+        std::cout << cmd << '\n';
         proxy.Call(cmd, {}, -1, slsDetectorDefs::HELP_ACTION, os);
 
         auto tmp = os.str().erase(0, cmd.size());

docs/src/pyenums.rst

@@ -71,4 +71,19 @@ exposed to Python through pybind11.
     :undoc-members:
 
 .. autoclass:: timingSourceType
+    :undoc-members:
+
+.. autoclass:: M3_GainCaps
+    :undoc-members:    
+
+.. autoclass:: portPosition
+    :undoc-members:
+
+.. autoclass:: streamingInterface
+    :undoc-members:
+
+.. autoclass:: vetoAlgorithm
+    :undoc-members:
+
+.. autoclass:: gainMode
     :undoc-members:

docs/src/pygettingstarted.rst

@@ -136,7 +136,7 @@ can use dir()
     '__str__', '__subclasshook__', '_adc_register', '_frozen', 
     '_register', 'acquire', 'adcclk', 'adcphase', 'adcpipeline', 
     'adcreg', 'asamples', 'auto_comp_disable', 'clearAcquiringFlag', 
-    'clearBit', 'clearROI', 'client_version', 'config', 'copyDetectorServer', 
+    'clearBit', 'clearROI', 'client_version', 'config',  
     'counters', 'daclist', 'dacvalues', 'dbitclk', 'dbitphase' ...
 
 Since the list for Detector is rather long it's an good idea to filter it. 

docs/src/servers.rst

@@ -36,6 +36,7 @@ Detector Servers include:
 When using a blocking acquire command (sls_detector_acquire or Detector::acquire), the control server is blocked until end of acquisition. However, stop server commands could be used in parallel.
 
 
+.. _Automatic start servers:
 Automatic start 
 ------------------
 

docs/src/serverupgrade.rst

@@ -1,114 +1,66 @@
+.. _Detector Server Upgrade:
 Detector Server Upgrade
 =======================
 
 
-
-Eiger
--------------
-
-
 **Location:** slsDetectorPackage/serverBin/ folder for every release.
 
+.. note :: 
+
+    For Mythen3, Gotthard2 and Eiger, you need to add scripts to automatically start detector server upon power on. See :ref:`Automatic start<Automatic start servers>` for more details.
+
+ .. note :: 
+
+    Eiger requires a manual reboot. Or killall the servers and restart the new linked one. If you are in the process of updating firmware, then don't reboot yet.
+
+
+From 6.1.1 and above (no tftp required)
+---------------------------------------
+
+#. Program from console
 
-#. Kill old server and copy new server
     .. code-block:: bash
 
-        # Option 1: from detector console
-        # kill old server
-        ssh root@bebxxx
-        killall eigerDetectorServer
+        # the following command copies new server, creates a soft link to xxxDetectorServerxxx
+        # [Jungfrau][CTB][Moench] also deletes the old server binary and edits initttab to respawn server on reboot
+        # Then, the detector controller will reboot (except Eiger)
+        sls_detector_put updatedetectorserver /complete-path-to-binary/xxxDetectorServerxxx
 
-        # copy new server
-        cd executables
-        scp user@pc:/path/eigerDetectorServerxxx .
-        chmod 777 eigerDetectorServerxxx
-        ln -sf eigerDetectorServerxxx eigerDetectorServer
-        sync
+#. Copy the detector server specific config files or any others required to the detector:
 
-        # Options 2: from client console for multiple modules
-        for i in bebxxx bebyyy;
-        do ssh root@$i killall eigerDetectorServer;
-        scp eigerDetectorServerxxx root@$i:~/executables/eigerDetectorServer;
-        ssh root@$i sync; done
+   .. code-block:: bash
 
+        sls_detector_put execcommand "tftp pcxxx -r configxxx -g"
 
-#. Reboot the detector.
-
-
-Jungfrau
--------------
-
-**Location:** slsDetectorPackage/serverBin/ folder for every release.
+5.0.0 - 6.1.1
+--------------
 
 #. Install tftp and copy detector server binary to tftp folder
-#. Program from console (only from 5.0.0-rcx)
+#. Program from console
+
     .. code-block:: bash
 
-        # copies new server from pc tftp folder, respawns and reboots
-        sls_detector_put copydetectorserver jungfrauDetectorServerxxx pcxxx
+        # the following command copies new server from pc tftp folder, creates a soft link to xxxDetectorServerxxx
+        # [Jungfrau][CTB][Moench] also edits initttab to respawn server on reboot
+        # Then, the detector controller will reboot (except Eiger)
+        sls_detector_put copydetectorserver xxxDetectorServerxxx pcxxx
+
+#. Copy the detector server specific config files or any others required to the detector:
+
+   .. code-block:: bash
+
+        sls_detector_put execcommand "tftp pcxxx -r configxxx -g"
 
 
-Gotthard
----------
+Troubleshooting with tftp
+^^^^^^^^^^^^^^^^^^^^^^^^^
 
-**Location:** slsDetectorPackage/serverBin/ folder for every release.
+#. tftp write error: There is no space left. Please delete some old binaries and try again.
 
-#. Install tftp and copy detector server binary to tftp folder
-#. Program from console (only from 5.0.0-rcx)
-    .. code-block:: bash
-
-        # copies new server from pc tftp folder, respawns and reboots
-        sls_detector_put copydetectorserver gotthardDetectorServerxxx pcxxx
+#. text file busy: You are trying to copy the same server.
 
 
+Older than 5.0.0
+-----------------
 
-Mythen3
--------
-
-**Location:** slsDetectorPackage/serverBin/ folder for every release.
-
-#. Install tftp and copy detector server binary to tftp folder
-#. Program from console (only from 5.0.0-rcx)
-    .. code-block:: bash
-
-        # copies new server from pc tftp folder and reboots (does not respawn)
-        sls_detector_put copydetectorserver mythen3DetectorServerxxx pcxxx
-
-
-Gotthard2
-----------
-
-**Location:** slsDetectorPackage/serverBin/ folder for every release.
-
-#. Install tftp and copy detector server binary to tftp folder
-#. Program from console (only from 5.0.0-rcx)
-    .. code-block:: bash
-
-        # copies new server from pc tftp folder and reboots (does not respawn)
-        sls_detector_put copydetectorserver gotthard2DetectorServerxxx pcxxx
-
-
-Moench
-------
-
-**Location:** slsDetectorPackage/serverBin/ folder for every release.
-
-#. Install tftp and copy detector server binary to tftp folder
-#. Program from console (only from 5.0.0-rcx)
-    .. code-block:: bash
-
-        # copies new server from pc tftp folder, respawns and reboots
-        sls_detector_put copydetectorserver moenchDetectorServerxxx pcxxx
-
-
-Ctb
----
-
-**Location:** slsDetectorPackage/serverBin/ folder for every release.
-
-#. Install tftp and copy detector server binary to tftp folder
-#. Program from console (only from 5.0.0-rcx)
-    .. code-block:: bash
-
-        # copies new server from pc tftp folder, respawns and reboots
-        sls_detector_put copydetectorserver ctbDetectorServerxxx pcxxx
+Please contact us.

docs/src/troubleshooting.rst

@@ -247,6 +247,19 @@ Possible causes could be the following:
     * For Jungfrau, refer to :ref:`Jungfrau Power Supply Troubleshooting<Jungfrau Troubleshooting Power Supply>`.
 
 
+Cannot ping module (Nios)
+^^^^^^^^^^^^^^^^^^^^^^^^^
+
+If you executed "reboot" command on the board, you cannot ping it anymore unless you power cycle. To reboot the controller, please use the software command ("rebootcontroller"), which talks to the microcontroller.
+
+Gotthard2
+---------
+
+Cannot get data without a module attached
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+You cannot get data without a module attached as a specific pin is floating. Attach module to get data.
+
 
 Gotthard
 ----------

evalVersionVariables.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 GITREPO1='git remote -v'
 GITREPO2=" | grep \"fetch\" | cut -d' ' -f1"
 BRANCH1='git branch -v'

examples/moench03_T1.config

@@ -3,33 +3,33 @@
 ### edit with hostname or IP address of your detector 
 ############################################
 #hostname bchip181+
-hostname bchip181+
+hostname bchip119.psi.ch
 
 #############################################
 ### edit with hostname or 1Gbs IP address of your server
 ############################################
-rx_hostname mpc2011
+rx_hostname mpc2011:1777
 
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-udp_dstip 10.1.1.102
+udp_dstip 10.1.2.102
 #############################################
 ### edit with any number in the subnet of your server (first 3 numbers as above)
 ############################################
-udp_srcip 10.1.1.19
-udp_dstport 32411
+udp_srcip 10.1.2.19
+udp_dstport 32000
 
 #############################################
 ### edit with 10 Gbs IP of your server
 ############################################
-rx_zmqip 10.1.1.102
-rx_zmqport 50003
+rx_zmqip 10.1.2.102
+rx_zmqport 77000
 #############################################
 ### edit with 1 Gbs IP of PC where you will run the GUI
 ############################################
-zmqip 129.129.202.98
-zmqport 50001
+zmqip  129.129.202.132
+zmqport 77001
 
 
 
@@ -38,7 +38,7 @@ rx_zmqstream 1
 
 
 
-frames 100000
+frames 1000
 period 0.0006
 exptime 0.00035
 
@@ -62,3 +62,9 @@ highvoltage 90
 #adcreg 0x14 0x40
 
 
+
+frames 10
+period 0.1
+rx_jsonpara subframes 1
+rx_jsonpara frameMode raw
+rx_jsonpara detectorMode analog

genVersionHeader.sh

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 #####! /bin/awk -f
 
 

integrationTests/CMakeLists.txt

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 # MESSAGE( STATUS "CMAKE_CURRENT_SOURCE_DIR: " ${CMAKE_CURRENT_SOURCE_DIR} )
 # MESSAGE( STATUS "PROJECT_SOURCE_DIR: " ${PROJECT_SOURCE_DIR} )
 

integrationTests/test-eigerIntegration.cpp

@@ -1,9 +1,13 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include "DetectorImpl.h"
 #include "catch.hpp"
 #include "sls/string_utils.h"
 #include "tests/globals.h"
 #include <iostream>
 
+namespace sls {
+
 class MultiDetectorFixture {
   protected:
     DetectorImpl d;
@@ -134,7 +138,7 @@ TEST_CASE_METHOD(MultiDetectorFixture, "Get ID", "[.eigerintegration][cli]") {
     std::string hn = test::hostname;
     hn.erase(std::remove(begin(hn), end(hn), 'b'), end(hn));
     hn.erase(std::remove(begin(hn), end(hn), 'e'), end(hn));
-    auto hostnames = sls::split(hn, '+');
+    auto hostnames = split(hn, '+');
     CHECK(hostnames.size() == d.getNumberOfDetectors());
     for (int i = 0; i != d.getNumberOfDetectors(); ++i) {
         CHECK(d.getId(defs::DETECTOR_SERIAL_NUMBER, 0) ==
@@ -196,3 +200,5 @@ TEST_CASE_METHOD(MultiDetectorFixture, "rate correction",
     d.setRateCorrection(200);
     CHECK(d.getRateCorrection() == 200);
 }
+
+} // namespace sls

integrationTests/test-integrationDectector.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 
 #include "catch.hpp"
 
@@ -22,6 +24,8 @@
 // extern std::string detector_type;
 // extern dt type;
 
+namespace sls {
+
 TEST_CASE("Single detector no receiver", "[.integration][.single]") {
     auto t = Module::getTypeFromDetector(test::hostname);
     CHECK(t == test::type);
@@ -281,14 +285,14 @@ TEST_CASE(
     CHECK(m.getRateCorrection() == ratecorr);
 
     // ratecorr fail with dr 4 or 8
-    CHECK_THROWS_AS(m.setDynamicRange(8), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setDynamicRange(8), RuntimeError);
     CHECK(m.getRateCorrection() == 0);
     m.setDynamicRange(16);
     m.setDynamicRange(16);
     m.setRateCorrection(ratecorr);
     m.setDynamicRange(16);
     m.setRateCorrection(ratecorr);
-    CHECK_THROWS_AS(m.setDynamicRange(4), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setDynamicRange(4), RuntimeError);
     CHECK(m.getRateCorrection() == 0);
 }
 
@@ -327,11 +331,11 @@ TEST_CASE("Chiptestboard Loading Patterns", "[.ctbintegration]") {
     m.setPatternWord(addr, word);
     CHECK(m.setPatternWord(addr, -1) == word);
     addr = MAX_ADDR;
-    CHECK_THROWS_AS(m.setPatternWord(addr, word), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setPatternWord(addr, word), RuntimeError);
     CHECK_THROWS_WITH(m.setPatternWord(addr, word),
                       Catch::Matchers::Contains("be between 0 and"));
     addr = -1;
-    CHECK_THROWS_AS(m.setPatternWord(addr, word), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setPatternWord(addr, word), RuntimeError);
     CHECK_THROWS_WITH(m.setPatternWord(addr, word),
                       Catch::Matchers::Contains("be between 0 and"));
 
@@ -406,7 +410,7 @@ TEST_CASE("Chiptestboard Dbit offset, list, sampling, advinvert",
     CHECK(m.getReceiverDbitList().size() == 10);
 
     list.push_back(64);
-    CHECK_THROWS_AS(m.setReceiverDbitList(list), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setReceiverDbitList(list), RuntimeError);
     CHECK_THROWS_WITH(m.setReceiverDbitList(list),
                       Catch::Matchers::Contains("be between 0 and 63"));
 
@@ -474,7 +478,7 @@ TEST_CASE("Eiger or Jungfrau nextframenumber",
     CHECK(m.acquire() == slsDetectorDefs::OK);
     CHECK(m.getReceiverCurrentFrameIndex() == val);
 
-    CHECK_THROWS_AS(m.setNextFrameNumber(0), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setNextFrameNumber(0), RuntimeError);
 
     if (m.getDetectorTypeAsString() == "Eiger") {
         val = 281474976710655;
@@ -509,8 +513,10 @@ TEST_CASE("Eiger partialread", "[.eigerintegration][partialread]") {
     m.setDynamicRange(8);
     m.setPartialReadout(256);
     CHECK(m.getPartialReadout() == 256);
-    CHECK_THROWS_AS(m.setPartialReadout(1), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setPartialReadout(1), RuntimeError);
     CHECK(m.getPartialReadout() == 256);
-    CHECK_THROWS_AS(m.setPartialReadout(0), sls::RuntimeError);
+    CHECK_THROWS_AS(m.setPartialReadout(0), RuntimeError);
     m.setPartialReadout(256);
-}
+}
+
+} // namespace sls

integrationTests/test-integrationMulti.cpp

@@ -1,13 +1,17 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 #include "DetectorImpl.h"
 #include "catch.hpp"
 #include "sls/string_utils.h"
 #include "tests/globals.h"
 #include <iostream>
 
+namespace sls {
+
 using namespace Catch::literals;
 
 TEST_CASE("Initialize a multi detector", "[.integration][.multi]") {
-    auto hostnames = sls::split(test::hostname, '+');
+    auto hostnames = split(test::hostname, '+');
 
     DetectorImpl d(0, true, true);
     d.setHostname(test::hostname.c_str());
@@ -100,3 +104,6 @@ TEST_CASE("Set and read timers", "[.integration][.multi]") {
 
     d.freeSharedMemory();
 }
+
+} // namespace sls
+

integrationTests/test.cpp

@@ -1,3 +1,5 @@
+// SPDX-License-Identifier: LGPL-3.0-or-other
+// Copyright (C) 2021 Contributors to the SLS Detector Package
 // tests-main.cpp
 #define CATCH_CONFIG_MAIN
 #include "catch.hpp"

libzmq-pkg-config/FindZeroMQ.cmake

@@ -1,27 +0,0 @@
-#From: https://github.com/zeromq/cppzmq/
-set(PKG_CONFIG_USE_CMAKE_PREFIX_PATH ON)
-find_package(PkgConfig)
-pkg_check_modules(PC_LIBZMQ QUIET libzmq)
-
-set(ZeroMQ_VERSION ${PC_LIBZMQ_VERSION})
-find_library(ZeroMQ_LIBRARY NAMES libzmq.so libzmq.dylib libzmq.dll
-             PATHS ${PC_LIBZMQ_LIBDIR} ${PC_LIBZMQ_LIBRARY_DIRS})
-find_library(ZeroMQ_STATIC_LIBRARY NAMES libzmq-static.a libzmq.a libzmq.dll.a
-             PATHS ${PC_LIBZMQ_LIBDIR} ${PC_LIBZMQ_LIBRARY_DIRS})
-
-if(ZeroMQ_LIBRARY OR ZeroMQ_STATIC_LIBRARY)
-    set(ZeroMQ_FOUND ON)
-endif()
-
-if (TARGET libzmq)
-    # avoid errors defining targets twice
-    return()
-endif()
-
-add_library(libzmq SHARED IMPORTED)
-set_property(TARGET libzmq PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${PC_LIBZMQ_INCLUDE_DIRS})
-set_property(TARGET libzmq PROPERTY IMPORTED_LOCATION ${ZeroMQ_LIBRARY})
-
-add_library(libzmq-static STATIC IMPORTED ${PC_LIBZMQ_INCLUDE_DIRS})
-set_property(TARGET libzmq-static PROPERTY INTERFACE_INCLUDE_DIRECTORIES ${PC_LIBZMQ_INCLUDE_DIRS})
-set_property(TARGET libzmq-static PROPERTY IMPORTED_LOCATION ${ZeroMQ_STATIC_LIBRARY})

notice_to_add_for_every_file

@@ -1,16 +0,0 @@
-    Copyright (C) 2021 Contributors to the SLS Detector Package
-    
-    This file is part of the SLS Detecotor Package.
-
-    SLS Detecotor Package is free software: you can redistribute it and/or modify
-    it under the terms of the GNU Lesser General Public License as published by
-    the Free Software Foundation, either version 3 of the License, or
-    (at your option) any later version.
-
-    SLS Detecotor Package is distributed in the hope that it will be useful,
-    but WITHOUT ANY WARRANTY; without even the implied warranty of
-    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-    GNU Lesser General Public License for more details.
-
-    You should have received a copy of the GNU Lesser General Public License
-    along with SLS Detecotor Package.  If not, see <https://www.gnu.org/licenses/>.

python/CMakeLists.txt

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 pybind11_add_module(_slsdet 
     src/main.cpp 

python/README.md

@@ -1,63 +0,0 @@
-# sls_detector: Python interface to slsDetectorPackage
-Python interface to the Sls Detector Software. 
-
-### Documentation ###
-Sphinx built documentation is available here:
-[https://slsdetectorgroup.github.io/sls_detector/](https://slsdetectorgroup.github.io/sls_detector/)
-
-
-### Install using conda ###
-
-Binaries are available using conda. This installs both the detector software and the Python
-interface.
-
-```bash
-#Add conda channels
-conda config --add channels conda-forge
-conda config --add channels slsdetectorgroup
-
-#Install latest version
-conda install sls_detector
-
-#Install specific version
-conda install sls_detector=3.0.1
-
-#Scientific Linux 6 version (GLIBC2.12)
-conda install sls_detector=SL6_3.0.1
-```
-
-### Building using conda-build ###
-
-Needs [sls_detector_software](https://github.com/slsdetectorgroup/sls_detector_software) installed.
-
-```bash
-#Clone source code
-git clone https://github.com/slsdetectorgroup/sls_detector.git
-
-#Checkout the branch needed
-git checkout 3.0.1
-
-#Build and install the local version
-conda-build sls_detector
-conda install --use-local sls_detector
-
-
-```
-### Developer build ###
-
-IF you if you are developing and are making constant changes to the code it's a bit cumbersome 
-to build with conda and install. Then an easier way is to build the C/C++ parts in the package 
-directory and temporary add this to the path
-
-```bash
-#in path/to/sls_detector  
-python setup.py build_ext --inplace
-```
-Then in your Python script
-```python
-
-import sys
-sys.path.append('/path/to/sls_detector')
-from sls_detector import Detector
-```
-

python/examples/exposure_time.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 """
 Example showing how to set and get exposure times
 """

python/examples/manipulate_pattern.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 
 from slsdet import Detector, patternParameters

python/examples/non-blocking-acquire-process.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 import time
 from multiprocessing import Process
 from slsdet import Detector, runStatus

python/examples/non-blocking-acquire.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 import time
 from slsdet import Detector, runStatus
 

python/examples/reading_dacs.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 from slsdet import Detector, Eiger, dacIndex
 
 

python/examples/reading_temperature.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 from slsdet import Detector, Eiger, dacIndex
 
 

python/examples/threshold_scan.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 from slsdet import Eiger
 
 d = Eiger()

python/examples/use_currentsource.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 from slsdet import Detector, currentSrcParameters
 
 s = currentSrcParameters()

python/examples/use_enum.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 # Most settings are represented as enums that can be 
 # explicitly imported
 

python/examples/using_scan.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 
 from slsdet import Mythen3, scanParameters, dacIndex
 

python/scripts/basic.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 import os
 import sys
 import numpy as np

python/scripts/compare_with_commandline.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 import subprocess
 import locale
 out = subprocess.run(['g', 'list'], stdout = subprocess.PIPE, encoding=locale.getpreferredencoding())

python/scripts/compile_servers.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 import subprocess
 import os
 import sys

python/scripts/generate_enums.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 """
 Code generator for enum bindings in the Python extension. 
 Reads the sls_detector_defs.h and enums_in.cpp then outputs 
@@ -11,11 +13,11 @@ import subprocess
 
 from parse import remove_comments
 
-allow_bitwise_op = ["M3_GainCaps"]
-allow_bitwise_op = ["streamingInterface"]
 
-op_key = {"operator|": "__or__", 
-          "operator&" : "__and__"}
+allow_bitwise_op = ["streamingInterface", "M3_GainCaps"]
+
+op_key = {"operator|": "|", 
+          "operator&" : "&"}
 
 def single_line_enum(line):
     sub = line[line.find('{')+1:line.find('}')]
@@ -90,8 +92,7 @@ def generate_enum_string(enums):
 
         #Here add the operators 
         for op in operators:
-            data.append(f"\n\t.def(\"{op_key[op]}\", py::overload_cast< const slsDetectorDefs::streamingInterface&,  const slsDetectorDefs::streamingInterface&>(&{op}))")
-
+            data.append(f"\n\t.def(py::self {op_key[op]} slsDetectorDefs::{key}())")
 
         data.append(';\n\n')
     return ''.join(data)

python/scripts/generate_functions.py

@@ -1,52 +1,62 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 """
 This file is used to auto generate Python bindings for the 
 sls::Detector class. The tool needs the libclang bindings
 to be installed. 
 
 When the Detector API is updated this file should be run
-manually
+manually.
 """
 from clang import cindex
 import subprocess
 import argparse
+import sys
+import time
+from pathlib import Path
+from parse import system_include_paths, clang_format_version
 
+REDC = '\033[91m'
+GREENC = '\033[92m'
+ENDC = '\033[0m'
+def red(msg):
+    return f'{REDC}{msg}{ENDC}'
+
+def green(msg):
+    return f'{GREENC}{msg}{ENDC}'
+
+def check_clang_format_version(required_version):
+    if (ver := clang_format_version()) != required_version:
+        msg = red(f'Clang format version {required_version} required, detected: {ver}. Bye!')
+        print(msg)
+        sys.exit(1)
+    else:
+        msg = green(f'Found clang-format version {ver}')
+        print(msg)
+
+def check_for_compile_commands_json(path):
+    # print(f"Looking for compile data base in: {path}")
+    compile_data_base_file = path/'compile_commands.json'
+    if not compile_data_base_file.exists():
+        msg = red(f"No compile_commands.json file found in {path}. Bye!")
+        print(msg)
+        sys.exit(1)
+    else:
+        msg = green(f'Found: {compile_data_base_file}')
+        print(msg)
 
-from parse import system_include_paths
 
 default_build_path = "/home/l_frojdh/sls/build/"
 fpath = "../../slsDetectorSoftware/src/Detector.cpp"
 
 
-parser = argparse.ArgumentParser()
-parser.add_argument(
-    "-p",
-    "--build_path",
-    help="Path to the build database",
-    type=str,
-    default=default_build_path,
-)
-cargs = parser.parse_args()
 
-db = cindex.CompilationDatabase.fromDirectory(cargs.build_path)
-index = cindex.Index.create()
-args = db.getCompileCommands(fpath)
-args = list(iter(args).__next__().arguments)[0:-1]
-args = args + "-x c++ --std=c++11".split()
-syspath = system_include_paths("clang++")
-incargs = ["-I" + inc for inc in syspath]
-args = args + incargs
-
-
-tu = index.parse(fpath, args=args)
 
 
 m = []
 ag = []
-
 lines = []
-
 ag2 = []
-
 cn = []
 
 def get_arguments(node):
@@ -64,7 +74,7 @@ def get_arguments_with_default(node):
     args = []
     for arg in node.get_arguments():
         tokens = [t.spelling for t in arg.get_tokens()]
-        print(tokens)
+        # print(tokens)
         if '=' in tokens:
             if arg.type.spelling == "sls::Positions": #TODO! automate
                 args.append("py::arg() = Positions{}")
@@ -109,33 +119,67 @@ def visit(node):
                     lines.append(
                         f'.def("{child.spelling}",{fs} &Detector::{child.spelling}{args})'
                     )
+                    if cargs.verbose:
+                        print(f'&Detector::{child.spelling}{args})')
                     cn.append(child)
     for child in node.get_children():
         visit(child)
 
-        # .def("setRxHostname",
-        #      (void (Detector::*)(const std::string &, Positions)) &
-        #          Detector::setRxHostname,
-        #      py::arg(), py::arg() = Positions{})
-        # .def("setRxHostname",
-        #      (void (Detector::*)(const std::vector<std::string> &)) &
-        #          Detector::setRxHostname,
-        #      py::arg())
 
+if __name__ == "__main__":
+    parser = argparse.ArgumentParser()
+    parser.add_argument(
+        "-p",
+        "--build_path",
+        help="Path to the build database",
+        type=Path,
+        default=default_build_path,
+    )
+    parser.add_argument(
+        "-v",
+        "--verbose",
+        help="more output",
+        action='store_true',
+    )
+    cargs = parser.parse_args()
+    
+    check_clang_format_version(12)
+    check_for_compile_commands_json(cargs.build_path)
 
-visit(tu.cursor)
+    print("Parsing functions in Detector.h - ", end = "", flush = True)
+    t0 = time.perf_counter()
+    #parse functions
+    db = cindex.CompilationDatabase.fromDirectory(cargs.build_path)
+    index = cindex.Index.create()
+    args = db.getCompileCommands(fpath)
+    args = list(iter(args).__next__().arguments)[0:-1]
+    args = args + "-x c++ --std=c++11".split()
+    syspath = system_include_paths("clang++")
+    incargs = ["-I" + inc for inc in syspath]
+    args = args + incargs
+    tu = index.parse(fpath, args=args)
+    visit(tu.cursor)
+    print(green('OK'))
+    print(f'Parsing took {time.perf_counter()-t0:.3f}s')
 
+    print("Read detector_in.cpp - ", end = "")
+    with open("../src/detector_in.cpp") as f:
+        data = f.read()
+    s = "".join(lines)
+    s += ";"
+    text = data.replace("[[FUNCTIONS]]", s)
+    warning = "/* WARINING This file is auto generated any edits might be overwritten without warning */\n\n"
+    print(green("OK"))
+    print("Writing to detector.cpp - ", end = "")
+    with open("../src/detector.cpp", "w") as f:
+        f.write(warning)
+        f.write(text)
+    print(green('OK'))
 
-with open("../src/detector_in.cpp") as f:
-    data = f.read()
-s = "".join(lines)
-s += ";"
-text = data.replace("[[FUNCTIONS]]", s)
-warning = "/* WARINING This file is auto generated any edits might be overwritten without warning */\n\n"
-with open("../src/detector.cpp", "w") as f:
-    f.write(warning)
-    f.write(text)
-
-# run clang format on the output
-subprocess.run(["clang-format", "../src/detector.cpp", "-i"])
+    # run clang format on the output
+    print('Running clang format on generated source -', end = "")
+    subprocess.run(["clang-format", "../src/detector.cpp", "-i"])
+    print(green(" OK"))
 
+    print("Changes since last commit:")
+    subprocess.run(['git',  'diff', '../src/detector.cpp'])

python/scripts/list_tested_cmd.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 """
 Utility to find and list which command line functions have tests and
 where the tests are located

python/scripts/parse.py

@@ -1,8 +1,16 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 import re
 import subprocess
 from subprocess import PIPE
 import os
 
+def clang_format_version():
+    p = subprocess.run(['clang-format', '--version'], capture_output = True)
+    ver = p.stdout.decode().split()[2]
+    major = int(ver.split('.')[0])
+    return major
+
 
 def remove_comments(text):
     def replacer(match):

python/scripts/test_virtual.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 import pytest
 import subprocess
 import os

python/setup.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 """
 Setup file for slsdet
 Build upon the pybind11 example found here: https://github.com/pybind/python_example
@@ -25,6 +27,7 @@ ext_modules = [
     Pybind11Extension(
         '_slsdet',
         ['src/main.cpp',
+        'src/current.cpp',
         'src/enums.cpp',
         'src/detector.cpp',
         'src/network.cpp',

python/slsdet/__init__.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 # from .detector import Detector, DetectorError, free_shared_memory
 from .eiger import Eiger
 from .ctb import Ctb

python/slsdet/adcs.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 from functools import partial
 class Adc:
     def __init__(self, name, enum, detector):

python/slsdet/ctb.py

@@ -1,41 +1,45 @@
-from .detector import Detector
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
+from .detector import Detector, freeze
 from .utils import element_if_equal
-from .dacs import DetectorDacs
+from .dacs import DetectorDacs, NamedDacs
 import _slsdet
 dacIndex = _slsdet.slsDetectorDefs.dacIndex
 from .detector_property import DetectorProperty
 
-class CtbDacs(DetectorDacs):
-    """
-    Ctb dacs
-    """
-    _dacs = [('dac0',  dacIndex(0), 0, 4000,    1400),
-             ('dac1',  dacIndex(1), 0, 4000,    1200),
-             ('dac2',  dacIndex(2), 0, 4000,    900),
-             ('dac3',  dacIndex(3), 0, 4000,    1050),
-             ('dac4',  dacIndex(4), 0, 4000,     1400),
-             ('dac5',  dacIndex(5), 0, 4000,    655),
-             ('dac6',  dacIndex(6), 0, 4000,    2000),
-             ('dac7',  dacIndex(7), 0, 4000,     1400),
-             ('dac8',  dacIndex(8), 0, 4000,    850),
-             ('dac9',  dacIndex(9), 0, 4000,    2000),
-             ('dac10', dacIndex(10), 0, 4000,    2294),
-             ('dac11', dacIndex(11), 0, 4000,    983),
-             ('dac12', dacIndex(12), 0, 4000,    1475),
-             ('dac13', dacIndex(13), 0, 4000,    1200),
-             ('dac14', dacIndex(14), 0, 4000,    1600),
-             ('dac15', dacIndex(15), 0, 4000,    1455),
-             ('dac16', dacIndex(16), 0, 4000,       0),
-             ('dac17', dacIndex(17), 0, 4000,    1000),
-            ]
-    _dacnames = [_d[0] for _d in _dacs]
+# class CtbDacs(DetectorDacs):
+#     """
+#     Ctb dacs
+#     """
+#     _dacs = [('dac0',  dacIndex(0), 0, 4000,    1400),
+#              ('dac1',  dacIndex(1), 0, 4000,    1200),
+#              ('dac2',  dacIndex(2), 0, 4000,    900),
+#              ('dac3',  dacIndex(3), 0, 4000,    1050),
+#              ('dac4',  dacIndex(4), 0, 4000,     1400),
+#              ('dac5',  dacIndex(5), 0, 4000,    655),
+#              ('dac6',  dacIndex(6), 0, 4000,    2000),
+#              ('dac7',  dacIndex(7), 0, 4000,     1400),
+#              ('dac8',  dacIndex(8), 0, 4000,    850),
+#              ('dac9',  dacIndex(9), 0, 4000,    2000),
+#              ('dac10', dacIndex(10), 0, 4000,    2294),
+#              ('dac11', dacIndex(11), 0, 4000,    983),
+#              ('dac12', dacIndex(12), 0, 4000,    1475),
+#              ('dac13', dacIndex(13), 0, 4000,    1200),
+#              ('dac14', dacIndex(14), 0, 4000,    1600),
+#              ('dac15', dacIndex(15), 0, 4000,    1455),
+#              ('dac16', dacIndex(16), 0, 4000,       0),
+#              ('dac17', dacIndex(17), 0, 4000,    1000),
+#             ]
+#     _dacnames = [_d[0] for _d in _dacs]
 
 from .utils import element
+@freeze
 class Ctb(Detector):
     def __init__(self, id = 0):
         super().__init__(id)
         self._frozen = False 
-        self._dacs = CtbDacs(self)
+        # self._dacs = CtbDacs(self)
+        self._dacs = NamedDacs(self)
     
     @property
     def dacs(self):

python/slsdet/dacs.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 from .detector_property import DetectorProperty
 from functools import partial
 import numpy as np
@@ -34,6 +36,79 @@ class Dac(DetectorProperty):
         dacstr = ''.join([f'{item:5d}' for item in self.get()])
         return f'{self.__name__:15s}:{dacstr}'
 
+class NamedDacs:
+    """
+    New implementation of the detector dacs. Used at the momen for 
+    Ctb but should replace the old one for all detectors
+    """
+    _frozen = False
+    _direct_access = ['_detector', '_current', '_dacnames']
+    def __init__(self, detector):
+        self._detector = detector
+        self._current = 0
+
+        self._dacnames = [n.replace(" ", "") for n in detector.getDacNames()]
+        # # Populate the dacs
+        for i,name in enumerate(self._dacnames):
+            #name, enum, low, high, default, detector
+            setattr(self, name, Dac(name, dacIndex(i), 0, 4000, 1000, detector))
+
+        self._frozen = True
+
+    # def __getattr__(self, name):
+    #     return self.__getattribute__('_' + name)
+
+    def __setattr__(self, name, value):
+        if not self._frozen:
+            #durining init we need to be able to set up the class
+            super().__setattr__(name, value)
+        else:
+            #Later we restrict us to manipulate dacs and a few fields
+            if name in self._direct_access:
+                super().__setattr__(name, value)
+            elif name in self._dacnames:
+                return self.__getattribute__(name).__setitem__(slice(None, None, None), value)
+            else:
+                raise AttributeError(f'Dac not found: {name}')
+
+    def __next__(self):
+        if self._current >= len(self._dacnames):
+            self._current = 0
+            raise StopIteration
+        else:
+            self._current += 1
+            return self.__getattribute__(self._dacnames[self._current-1])
+            # return self.__getattr__(self._dacnames[self._current-1])
+
+    def __iter__(self):
+        return self
+
+    def __repr__(self):
+        r_str = ['========== DACS =========']
+        r_str += [repr(dac) for dac in self]
+        return '\n'.join(r_str)
+    def get_asarray(self):
+        """
+        Read the dacs into a numpy array with dimensions [ndacs, nmodules]
+        """
+        dac_array = np.zeros((len(self._dacnames), len(self._detector)))
+        for i, _d in enumerate(self):
+            dac_array[i,:] = _d[:]
+        return dac_array
+
+    def to_array(self):
+        return self.get_asarray()       
+
+    def set_from_array(self, dac_array):
+        """
+        Set the dacs from an numpy array with dac values. [ndacs, nmodules]
+        """
+        dac_array = dac_array.astype(np.int)
+        for i, _d in enumerate(self):
+            _d[:] = dac_array[i]
+
+    def from_array(self, dac_array):
+        self.set_from_array(dac_array)
 
 class DetectorDacs:
     _dacs = []
@@ -48,7 +123,7 @@ class DetectorDacs:
         # Index to support iteration
         self._current = 0
 
-        # Populate the dacs
+        # Name the attributes? 
         for _d in self._dacs:
             setattr(self, '_'+_d[0], Dac(*_d, detector))
 
@@ -57,7 +132,10 @@ class DetectorDacs:
     def __getattr__(self, name):
         return self.__getattribute__('_' + name)
 
-
+    @property
+    def dacnames(self):
+        return [_d[0] for _d in _dacs]
+        
     def __setattr__(self, name, value):
         if name in self._dacnames:
             return self.__getattribute__('_' + name).__setitem__(slice(None, None, None), value)

python/slsdet/decorators.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 #!/usr/bin/env python3
 # -*- coding: utf-8 -*-
 """

python/slsdet/detector_property.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 from collections.abc import Iterable
 import numpy as np
 

python/slsdet/eiger.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 #!/usr/bin/env python3
 # -*- coding: utf-8 -*-
 """

python/slsdet/enums.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 """
 Automatically improt all enums from slsDetectorDefs and give an
 alias with their name in the enum module. All names from the enum

python/slsdet/errors.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 #!/usr/bin/env python3
 # -*- coding: utf-8 -*-
 """

python/slsdet/gotthard.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 #!/usr/bin/env python3
 # -*- coding: utf-8 -*-
 """

python/slsdet/gotthard2.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 #!/usr/bin/env python3
 # -*- coding: utf-8 -*-
 """

python/slsdet/jungfrau.py

@@ -1,3 +1,5 @@
+# SPDX-License-Identifier: LGPL-3.0-or-other
+# Copyright (C) 2021 Contributors to the SLS Detector Package
 #!/usr/bin/env python3
 # -*- coding: utf-8 -*-
 """