leonarski_f
a7b81b7db0
Trying with tag and uploading release
Build Packages / Build (push) Failing after 29s
2026-04-08 13:32:09 +02:00
leonarski_f
959636cbc3
Add version 1.0.0
2026-04-08 13:05:52 +02:00
leonarski_f
60135d9471
Include Node.js in the docker (needed for gitea)
2026-04-08 13:04:54 +02:00
leonarski_f
dd8bb91931
Add gitea process
Build Packages / Build (push) Successful in 29s
2026-04-08 12:49:39 +02:00
leonarski_f
15e8781a74
Use CMake to build the plugin and HDF5 (internally)
2026-04-08 12:39:50 +02:00
leonarski_f
cfe032b731
Remove need for hdf5_hl.h (so no need for unsupported configuration of HDF5)
2026-04-08 12:38:52 +02:00
leonarski_f
6421de97bb
Improve Makefile
2026-04-08 10:32:20 +02:00
leonarski_f
69470cd374
Update bitshuffle/lz4 code + embed bshuf_h5filter code into the library
2026-04-08 10:16:46 +02:00
2bcd3074cc
Null terminate buffer in file.c
...
Ensure the buffer is null terminated after allocation - otherwise correct results from strcmp below is undefined.
2026-02-04 11:20:21 +01:00
cfe0e78319
loop over all filters registered when printing
2024-12-18 16:46:14 +00:00
d7801cdb54
modified reading of NX_class attribute - to accommodate both
...
DATATYPE H5T_STRING {
STRSIZE 14;
STRPAD H5T_STR_NULLTERM;
CSET H5T_CSET_ASCII;
CTYPE H5T_C_S1;
}
and
DATATYPE H5T_STRING {
STRSIZE H5T_VARIABLE;
STRPAD H5T_STR_NULLTERM;
CSET H5T_CSET_UTF8;
CTYPE H5T_C_S1;
}
2024-12-17 09:59:55 +00:00
4cf18ceff4
Mechanism to read bitshuffle-compressed pixel-mask data - by
...
loading/using the normal bitshuffle source from
https://github.com/kiyo-masui/bitshuffle
(see Makefile).
2024-12-16 15:05:38 +00:00
44ba3cd278
Provide a mechanism to distinguish between an image number (as
...
understood on the XDS side) and the image ordinal (as stored in the
HDF data).
The 2D data arrays are not necessarily at image_nr_low=1 ;-)
2024-12-16 14:57:32 +00:00
ca8806c912
Merge pull request #2 from CV-GPhL/CV-GPhL-patch-1
...
Update plugin.c to write compilation time if available/set
2024-03-14 16:43:22 +01:00
163d5bdfb1
Update plugin.c to write compilation time if available/set
2024-03-14 16:42:52 +01:00
ca2c0ee0e7
Merge pull request #1 from DiamondLightSource/master
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Catching up 20240223
2024-02-23 12:55:55 +01:00
808f5fbd42
Do not depend on the strings being NULL terminated ( #29 )
...
Fixes #28
Instead make them NULL terminated by reading one longer into buffer
2023-08-09 09:42:16 +01:00
5d0b7bd104
New flag needed
2022-03-11 14:47:22 +00:00
77d2b84957
Better handling of (usually) unsigned data arrays when calling routine
...
to convert to (signed) int and apply pixel mask. The environment
variable DURIN_RESET_UNMASKED_PIXEL can now be used to set non-masked
saturated pixels in order to process them correctly with e.g. XDS.
2021-04-08 14:46:48 +01:00
0f27832f78
Resolved merge conflicts
2021-04-06 12:33:21 +01:00
300a980551
Use blocks for imports to prevent reorder; finish clang-format
2020-10-27 09:55:39 +00:00
4a6a75af70
clang-format err.*
2020-10-27 09:55:39 +00:00
b36870935a
clang-format file.*
2020-10-27 09:55:39 +00:00
d73d6d70cb
clang-format test.c
2020-10-27 09:55:39 +00:00
513bb10bf4
clang-format plugin
2020-10-27 09:55:39 +00:00
6ffef7d7c2
Typo; some comment formats
2020-10-27 09:55:39 +00:00
e3cad6a7c3
Switch to c99 from c89 default - fixes #20
...
auggested by @jcbollinger
2020-10-26 15:58:25 +00:00
9e7d609f42
allow for image offset via DURIN_IMAGE_NUMBER_OFFSET environment
...
variable
2020-06-12 15:57:14 +01:00
9b3236b084
First cut: use H5_USE_110_API ( #19 )
...
For #18 - compile against 1.10 API (may need to do more work to make sure this
does what we actually want)
2020-06-08 10:55:24 +01:00
f25a73c667
Set to NULL after free; though fixes nothing
2020-04-02 14:21:52 +01:00
6165d14c31
Force linking against HDF5 shared library ( #16 )
2020-01-22 06:40:22 +00:00
19b16ad2a1
Fix sprintf usage ( #15 )
2020-01-21 10:52:49 +00:00
4e2b0c7506
Point at release
2019-05-08 09:28:59 +01:00
34a38e15fd
Update README.md
2019-01-29 19:58:27 +00:00
8eaacaed77
Set plugin target as the default target in Makefile
...
This makes "make" build only the most useful software by default.
Building the test_plugin target requires fortran and openmp, which are
otherwise not required for the durin plugin itself, and is not of
interest to most building the software.
2019-01-29 14:11:20 +00:00
2f6348e8d2
Replace placeholders in LICENSE with the equivalent terms
2019-01-29 13:31:58 +00:00
ffebc60cdb
Stop errors when no pixel mask is provided
2019-01-29 13:31:58 +00:00
c129d095e0
CFLAGS to -fPIC
2019-01-18 15:00:28 +00:00
1e202a7429
more detail on how to use
2018-10-11 10:55:58 +01:00
1929c1149b
Merge branch 'chunk_read'
2018-10-09 14:21:09 +01:00
78d49aa161
Add -std=c89 to compile flags
...
Helps with some of the fixed-width typedefs in the bitshuffle library.
2018-10-09 14:12:30 +01:00
59f4983524
Fix nasty hacks
2018-10-04 04:12:39 +01:00
38b43be701
Nasty hack to work around non-masked data
2018-10-04 12:07:39 +09:00
d433e6b1d0
Apply mask at same time as data conversion
2018-08-20 12:51:19 +01:00
5c0b6e8366
Check if the bitshuffle filter was applied before decompressing
2018-08-17 18:00:14 +01:00
f6ba8eb2aa
Use the dataset's datatype for H5Dread, convert manually later.
...
Hopefully this results in less work for the HDF5 library (which would
not be done in parallel) and ensures the conversion is consistent
across all data retrieval strategies.
2018-08-17 18:00:14 +01:00
d1b25e18b8
Refactor description structs
2018-08-17 18:00:14 +01:00
ace6a46717
Implement direct-chunk reading to read data when possible
...
The HDF5 library was made thread-safe via excessive locking, so does
not gain much from reads being parallelized.
By using the H5DOread_chunk function (introduced in HDF5 1.10.2)
we reduce the time spent the library, improving performance for
when XDS uses multiple threads to process data.
The decompression and type conversions have to be done manually
however, and this is only used in a limited case.
2018-08-17 18:00:14 +01:00
38660b17fd
Fixes to allow bitshuffle-lz4 to compile with -std=c89
...
Removes all "//" style comments, adds a missing typedef
for "int16_t" (although these are not checked for correct width)
and removes duplicated "intX_t" typedefs.
It would be preferable to detect GCC (with its extensions) and use
its definitions of fixed-with integers if not compiling with C99.
2018-08-17 17:59:42 +01:00
369948795b
Add the bitshuffle-lz4 code and add to the build.
...
Source for the bitshuffle code is:
https://github.com/kiyo-masui/bitshuffle
Release Tag: 0.3.4
Commit at time of copy:
9ffba9de83036a91d345fa2f62fcaedf55f54c5f
The LZF and HDF5 plugin parts are not included as they are
not required.
2018-08-15 16:55:52 +01:00
leonarski_f
CV-GPhL