Charles Mita
369948795b
Source for the bitshuffle code is: https://github.com/kiyo-masui/bitshuffle Release Tag: 0.3.4 Commit at time of copy: 9ffba9de83036a91d345fa2f62fcaedf55f54c5f The LZF and HDF5 plugin parts are not included as they are not required.
Durin
XDS plugin for reading HDF5 files following the NeXuS format or those written by Dectris Eiger detectors.
See:
- https://www.nexusformat.org
- https://www.dectris.com/features/features-eiger-x/hdf5-and-nexus
- https://strucbio.biologie.uni-konstanz.de/xdswiki
Usage
In your XDS.INP add:
LIB=[path to durin-plugin.so]
NAME_TEMPLATE_OF_DATA_FRAMES=[data_path]/data_images_??????.h5
XDS will instruct the plugin to load [data_path]/data_images_master.h5 and this must be the
Eiger master file or the NeXus file for the data collection.
It is generally assumed that the files [data_path]/data_images_data_xxxxxx.h5 contain the actual
datasets and the master file contains HDF5 external links to these, but that is not required, so long as
the master file contains an NXdata or NXdetector group with either a dataset named data or a
series of datasets named data_000001, data_000002, etc.
Requirements
- HDF5 Library (https://www.hdfgroup.org/downloads)
Building
cd durin
make
Plugin file is build/durin-plugin.so