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leonarski_fandClaude Opus 5.5 6f6f69a979 still battery: no distance pins and no per-set tuning flags; gain from the data except where a file's baseline hides it

The stills distance is found from the data, so the --detector-distance pins go. Ice-ring detection,
the polarisation degree on one Rayonix set, the geometry pre-pass switch-off and the Alvra/one AGIPD
gains are no longer given: each was neutral or better without it. Kept: --wavelength where the file
states none or a different one, the polarisation on the mixed-form set (its beam-stop mask depends on
it) and the gain of one AGIPD set whose frames carry an uncorrected baseline.

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu

2026-10-22 22:13:53 +02:00

.gitea/workflows

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

acquisition_device

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

broker

Anomalous difference map: ANOM/PHANOM in _maps.mtz, /rugnux/map.ccp4?type=anom, a magenta mesh in the viewer

2026-10-22 20:18:51 +02:00

common

writer: _model.cif from rugnux live keeps the input model's metadata, as the served model.cif does

2026-10-22 20:18:51 +02:00

compression

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

detector_control

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

docker

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

docs

Merge rc178 (Mol* viewer, changelog rules) into stills-tilt

2026-10-22 22:13:20 +02:00

etc

v1.0.0-rc.166 (#76 )

2026-09-02 21:17:31 +02:00

fpga

v1.0.0-rc.178: version bump

2026-10-20 23:00:10 +02:00

frame_serialize

writer: _model.cif from rugnux live keeps the input model's metadata, as the served model.cif does

2026-10-22 20:18:51 +02:00

frontend

Mol* viewer: in line with AareDB's StructureView at its current head (8ece2c2)

2026-10-22 20:24:42 +02:00

gemmi_gph

v1.0.0-rc.176 (#86 )

2026-10-19 07:03:28 +02:00

image_analysis

Merge stills-flags-alvra: a stills file's gain read off its single-photon peak

2026-10-22 22:13:20 +02:00

image_puller

Live rugnux timing: from the puller's receive time, and from the first image

2026-10-19 19:35:54 +02:00

image_pusher

broker: initialize drops the dataset's bearer tokens and everything they protected

2026-10-20 12:16:32 +02:00

include

v1.0.0-rc.133

2026-03-26 20:50:33 +01:00

jungfrau

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

licenses

v1.0.0-rc.176 (#86 )

2026-10-19 07:03:28 +02:00

preview

Merge branch 'panel-s4' into panel-s5

2026-10-21 11:27:51 +02:00

reader

rugnux: the gain of a stills file that states none is read off its single-photon peak where the background resolves photons

2026-10-22 20:22:15 +02:00

receiver

Anomalous difference map: ANOM/PHANOM in _maps.mtz, /rugnux/map.ccp4?type=anom, a magenta mesh in the viewer

2026-10-22 20:18:51 +02:00

rugnux

Merge stills-flags-alvra: a stills file's gain read off its single-photon peak

2026-10-22 22:13:20 +02:00

tests

Merge stills-flags-alvra: a stills file's gain read off its single-photon peak

2026-10-22 22:13:20 +02:00

tools

still battery: no distance pins and no per-set tuning flags; gain from the data except where a file's baseline hides it

2026-10-22 22:13:53 +02:00

viewer

Merge branch 'panel-s4' into panel-s5

2026-10-21 11:27:51 +02:00

writer

writer: _model.cif from rugnux live keeps the input model's metadata, as the served model.cif does

2026-10-22 20:18:51 +02:00

xds-plugin

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

.gitattributes

v1.0.0-rc.153 (#63 )

2026-06-23 20:29:49 +02:00

.gitignore

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

.readthedocs.yaml

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

CLAUDE.md

CLAUDE.md: the changelog is written once, just before the merge into main - condensed one-liners of what users get

2026-10-22 20:14:33 +02:00

CMakeLists.txt

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

CONTRIBUTING.md

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

gen_python_client.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

gitea_create_release.py

v1.0.0-rc.94

2025-10-25 22:05:47 +02:00

gitea_upload_file.py

v1.0.0-rc.156 (#66 )

2026-07-03 19:18:56 +02:00

LICENSE

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

make_doc.sh

v1.0.0.rc-161 (#71 )

2026-08-13 17:03:10 +02:00

README.md

1.0.0-rc.174 (#84 )

2026-10-06 14:03:18 +02:00

THIRD_PARTY_NOTICES.md

v1.0.0-rc.176 (#86 )

2026-10-19 07:03:28 +02:00

update_version.sh

v1.0.0-rc.175 (#85 )

2026-10-16 15:34:43 +02:00

VERSION

v1.0.0-rc.178: version bump

2026-10-20 23:00:10 +02:00

README.md

Jungfraujoch

Application to receive and analyse data from the PSI JUNGFRAU and EIGER detectors, together with rugnux, its program for processing stored diffraction data - rotation and serial, macromolecular and small-molecule - from images to merged reflections.

All documentation is now placed in docs/ subdirectory and for the current version hosted on Jungfraujoch Read The Docs page.