leonarski_fandClaude Opus 5.5 e6b0dfafca Merge rc178 (Mol* viewer, changelog rules) into stills-tilt ...

Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Claude-Session: https://claude.ai/code/session_015CeEGgpKdfkCTJb3YNMJcu

2026-10-22 22:13:20 +02:00

..

images

docs: the stills workflow figure, overview and methods for rc178's stills

2026-10-21 00:15:42 +02:00

python_client

Anomalous difference map: ANOM/PHANOM in _maps.mtz, /rugnux/map.ccp4?type=anom, a magenta mesh in the viewer

2026-10-22 20:18:51 +02:00

ACKNOWLEDGEMENT.md

ACKNOWLEDGEMENT: the web frontend's Mol* viewer follows AareDB's setup (G. Gotthard, PSI)

2026-10-22 20:24:42 +02:00

BATTERY_REPORT.md

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

CBOR.md

writer: _model.cif from rugnux live keeps the input model's metadata, as the served model.cif does

2026-10-22 20:18:51 +02:00

CHANGELOG.md

CHANGELOG: 1.0.0-rc.178

2026-10-20 23:00:28 +02:00

conf.py

v1.0.0-rc.178: version bump

2026-10-20 23:00:10 +02:00

CPU_DATA_ANALYSIS_DECISIONS.md

Anomalous difference map: ANOM/PHANOM in _maps.mtz, /rugnux/map.ccp4?type=anom, a magenta mesh in the viewer

2026-10-22 20:18:51 +02:00

CPU_DATA_ANALYSIS_IMAGE.md

stills distance search: every centre scanned with a wider acceptance, a larger sample where nothing indexes

2026-10-22 18:27:40 +02:00

CPU_DATA_ANALYSIS_INDEXING.md

docs: the stills workflow figure, overview and methods for rc178's stills

2026-10-21 00:15:42 +02:00

CPU_DATA_ANALYSIS_INTEGRATION.md

RotationScaleMerge: scaling loops run to an rms step of 1e-5, accelerated from 1e-2 (RESULT-CHANGING)

2026-10-20 02:18:19 +02:00

CPU_DATA_ANALYSIS.md

RotationScaleMerge: Anderson-accelerate the per-frame scaling loops (RESULT-CHANGING)

2026-10-19 18:49:24 +02:00

DEPLOYMENT.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

DETECTOR_GEOMETRY.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

DETECTORS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

EXTERNAL_TEST_DATA_STILLS.md

still battery: Alvra sets take their pixel mask from the CrystFEL geometry, not --mask-good

2026-10-21 13:17:34 +02:00

EXTERNAL_TEST_DATA.md

tools/battery: the still battery - serial (XFEL stills) datasets against their depositions

2026-10-20 23:04:43 +02:00

FPGA_DATA_ANALYSIS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_DESIGN.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_LICENSE.md

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

FPGA_NETWORK.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_PCIE_DRIVER.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA_SETTINGS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

FPGA.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

GPU_DATA_ANALYSIS.md

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00

HARDWARE.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

HDF5.md

Panel id on spots and the panel table in the start message

2026-10-21 10:28:23 +02:00

IMAGE_STREAM.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

index.rst

tools/battery: the still battery - serial (XFEL stills) datasets against their depositions

2026-10-20 23:04:43 +02:00

JFJOCH_BROKER.md

broker: rugnux live settings and model need no bearer token

2026-10-20 07:43:47 +02:00

JFJOCH_VIEWER.md

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00

JFJOCH_WRITER.md

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

jfjoch.png

v1.0.0-rc.110 (#16)

2025-11-28 12:47:35 +01:00

LICENSE.md

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

NAMING.md

v1.0.0-rc.157 (#67)

2026-07-11 07:19:11 +02:00

OPENAPI_SPECS.rst

version 1.0.0-rc.27

2024-12-02 21:17:14 +01:00

OPENAPI.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

PIXEL_MASK.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

PYTHON_CLIENT.md

v1.0.0-rc.173 (#83)

2026-09-29 15:57:32 +02:00

RELEASE_CONTENTS.md

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00

REPOSITORIES.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

requirements.txt

version 1.0.0-rc.25

2024-11-22 21:25:20 +01:00

RUGNUX_ADVANCED.md

CrystFEL geometry: read the pixel masks and bad regions instead of ignoring them

2026-10-21 12:42:08 +02:00

RUGNUX_BENCHMARKING.md

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00

RUGNUX_CALIBRATION.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

RUGNUX_FORMATS.md

stills distance search: every centre scanned with a wider acceptance, a larger sample where nothing indexes

2026-10-22 18:27:40 +02:00

RUGNUX_INSTALL.md

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00

RUGNUX_INTEGRATION.md

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

RUGNUX_MODEL_AND_REFERENCE.md

v1.0.0-rc.177 (#87)

2026-10-19 16:07:31 +02:00

RUGNUX_OVERVIEW.md

docs: the stills workflow figure, overview and methods for rc178's stills

2026-10-21 00:15:42 +02:00

RUGNUX_REPORT.md

Stills keep an overloaded observation as a lower bound instead of dropping it

2026-10-22 10:36:33 +02:00

RUGNUX_TUTORIAL.md

v1.0.0-rc.177 (#87)

2026-10-19 16:07:31 +02:00

RUGNUX.md

Serial XFEL stills inputs: readers from the files themselves, module geometry and its refinement

2026-10-20 23:30:48 +02:00

SECURITY.md

broker: initialize drops the dataset's bearer tokens and everything they protected

2026-10-20 12:16:32 +02:00

SOFTWARE_INTEGRATION.md

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

SOFTWARE.md

v1.0.0-rc.175 (#85)

2026-10-16 15:34:43 +02:00

TESTS.md

tools/battery: the still battery - serial (XFEL stills) datasets against their depositions

2026-10-20 23:04:43 +02:00

THIRD_PARTY_NOTICES.md

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00

TOOLS.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

VERSIONING.md

v1.0.0-rc.171 (#81)

2026-09-17 14:42:52 +02:00

WEB_FRONTEND.md

v1.0.0-rc.176 (#86)

2026-10-19 07:03:28 +02:00