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Filip Leonarski
fbdc0423da Implement raw TCP/IP in jfjoch_broker and jfjoch_writer
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2026-03-01 19:45:16 +01:00
Filip Leonarski
84432efff4 Implement raw TCP/IP in jfjoch_broker and jfjoch_writer
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2026-03-01 19:19:33 +01:00
Filip Leonarski
0239854dfe VERSION: 1.0.0-rc.127
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2026-03-01 16:44:18 +01:00
Filip Leonarski
fa5da877cf Experimental support for raw TCP/IP with zero copy feature 2026-03-01 16:42:29 +01:00
Filip Leonarski
eb67d537fd jfjoch_tests: Fix
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2026-03-01 12:52:20 +01:00
Filip Leonarski
a9e8908c6b jfjoch_tests: Shorten message 2026-03-01 11:38:13 +01:00
Filip Leonarski
84e2191f0b JFJochReceiverPlots: Add plots of buffer locations in sending/processing 2026-03-01 11:37:31 +01:00
Filip Leonarski
d4c077edc3 DetectorSetup: Increase EIGER read out time to 20 us 2026-03-01 09:50:54 +01:00
leonarski_f
8280fde0a2 ImagePusher: Make ZMQStream2Pusher similar to HDF5FilePusher, with a message queue and sending thread
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2026-02-28 23:25:32 +01:00
leonarski_f
c897008d6e ImageBuffer: Improved logic for slot management 2026-02-28 21:47:51 +01:00
leonarski_f
c92afa95fb ZeroCopyReturnValue: Add GetHandle() 2026-02-28 20:59:03 +01:00
leonarski_f
7f416b0956 ZMQWrappers: SendZeroCopy can be blocking 2026-02-28 20:31:58 +01:00
leonarski_f
c2d930a599 ZMQWrappers: Make SendZeroCopy more robust for error handling 2026-02-28 20:07:44 +01:00
leonarski_f
8691d0e83f AcquisitionCounters: Fixes 2026-02-28 17:32:54 +01:00
leonarski_f
fe61cfcfde AcquisitionDevice: Fix potential infinite loop 2026-02-28 17:32:34 +01:00
leonarski_f
ab077625b9 StatusVector: Handle (hypothetical) situation when one image is overwritten by itself 2026-02-28 17:02:27 +01:00
leonarski_f
a9e88a9b6e AcquisiotnCounters: Add more synchronization and avoid busy waiting 2026-02-28 17:00:27 +01:00
leonarski_f
64067f7430 CBOR: Handle rotation_lattice having no set value 2026-02-28 16:55:08 +01:00
leonarski_f
0ba6f495d1 ScaleAndMerge: Fix fall through in switch 2026-02-28 16:47:10 +01:00
leonarski_f
6e2c65011e Remove volatile, use std::atomic instead 2026-02-28 16:29:18 +01:00
leonarski_f
88020744cf JFJochReceiverCurrentStatus: Use std::atomic for progress 2026-02-28 16:18:25 +01:00
leonarski_f
79cb6d3073 ImageBuffer: Minor fixes 2026-02-28 16:18:05 +01:00
leonarski_f
6e97b7c15c JFJochReceiverPlots: Safer code 2026-02-28 16:09:14 +01:00
leonarski_f
e432edb5d9 JFJochReceiverPlots: Tiny bit safer code 2026-02-28 15:40:44 +01:00
leonarski_f
9bb91ee849 ScaleAndMerge: Minor fixes 2026-02-28 13:06:23 +01:00
leonarski_f
b179ac0d81 StatusVector: Prereserve arrays for better performance 2026-02-28 13:05:56 +01:00
leonarski_f
b00ff5c9c1 ScaleAndMerge: Change bounds for R 2026-02-23 15:44:12 +01:00
Filip Leonarski
64390c71d1 ScaleAndMerge: Don't allow zero in still mode (need to figure out proper bounds...)
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2026-02-23 15:07:41 +01:00
Filip Leonarski
94aea965eb jfjoch_process: Add still partiality model (though why it fails)? 2026-02-23 14:53:19 +01:00
leonarski_f
f8c326191f ScaleAndMerge: Refine partiality model options
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2026-02-23 14:43:06 +01:00
Filip Leonarski
3a33944dc4 ScaleAndMerge: Set iteration limit to 10
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2026-02-22 10:02:35 +01:00
Filip Leonarski
7535ba56e3 ScaleAndMerge: Add more partiality models 2026-02-22 09:38:00 +01:00
leonarski_f
5527fd0aa2 IndexAndRefine: For the moment - symmetry is enforced only if space group and unit cell are both provided
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2026-02-20 18:15:17 +01:00
Filip Leonarski
745755184a ScaleAndMerge: Split code into functions
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2026-02-20 15:27:28 +01:00
Filip Leonarski
6eeb9c0449 jfjoch_viewer: Read image scale factor 2026-02-20 15:08:40 +01:00
Filip Leonarski
b5a7ae14ff jfjoch_tests: Fix ordering of unit cell of lysozyme
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2026-02-20 14:12:22 +01:00
Filip Leonarski
ff6e02046a ScaleAndMerge: Fix still case (though it doesn't really work at the moment)
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2026-02-20 13:40:51 +01:00
Filip Leonarski
c33366f3d6 IndexAndRefine: Use mosaicity from indexing for scaling 2026-02-20 13:18:16 +01:00
Filip Leonarski
203eefca66 jfjoch_process: Save scale factors
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2026-02-20 11:48:34 +01:00
Filip Leonarski
3819fe5a86 ScaleAndMerge: add option to cluster images for refinement (faster convergence, but pays price in quality) 2026-02-20 11:47:01 +01:00
Filip Leonarski
e6e0f5b2f0 ScaleAndMerge: clean-up (no log residual, no fixed mosaicity, return per-image values) 2026-02-20 11:37:59 +01:00
Filip Leonarski
43c3402198 ScaleMerge: Simplify by removing log residual 2026-02-20 09:28:50 +01:00
Filip Leonarski
eefea7f36b XtalOptimizer: Don't regularize lattices at input, as this can give problems to downstream procedures. We assume that SearchLattice gave reasonable response. Need to better handle this in the future. 2026-02-20 09:23:34 +01:00
Filip Leonarski
89d827a24f jfjoch_process: Add resolution limit 2026-02-19 10:37:26 +01:00
Filip Leonarski
32b681e591 v1.0.0-rc.126 (#33)
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This is an UNSTABLE release. If things go wrong with analysis, it is better to revert to 1.0.0-rc.124.

* jfjoch_broker: Fix bug for monoclinic space groups being wrongly refined when beta is much different from 90 deg.

Reviewed-on: #33
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
1.0.0-rc.126 		2026-02-19 07:01:38 +01:00
Filip Leonarski
1ab257af6c v1.0.0-rc.125 (#32)
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This is an UNSTABLE release. This version adds scalign and merging. These are experimental at the moment, and should not be used for production analysis.
If things go wrong with analysis, it is better to revert to 1.0.0-rc.124.

* jfjoch_broker: Improve logic on switching on/off spot finding
* jfjoch_broker: Increase maximum spot count for FFBIDX to 65536
* jfjoch_broker: Increase default maximum unit cell for FFT to 500 A (could have performance impact, TBD)
* jfjoch_process: Add scalign and merging functionality - program is experimental at the moment and should not be used for production analysis
* jfjoch_viewer: Display partiality and reciprocal Lorentz-polarization correction for each reflection
* jfjoch_writer: Save more information about each reflection

Reviewed-on: #32
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
1.0.0-rc.125 		2026-02-18 16:17:21 +01:00
Filip Leonarski
07fe4dd3bb v1.0.0-rc.124 (#31)
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This is an UNSTABLE release. This version significantly rewrites code to predict reflection position and integrate them,
especially in case of rotation crystallography. If things go wrong with analysis, it is better to revert to 1.0.0-rc.123.

* jfjoch_broker: Improve refection position prediction and Bragg integration code.
* jfjoch_broker: Align with XDS way of calculating Lorentz correction and general notation.
* jfjoch_writer: Fix saving mosaicity properly in HDF5 file.
* jfjoch_viewer: Introduce high-dynamic range mode for images
* jfjoch_viewer: Ctrl+mouse wheel has exponential change in foreground (+/-15%)
* jfjoch_viewer: Zoom-in numbers have better readability

Reviewed-on: #31
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
1.0.0-rc.124 		2026-02-01 13:29:33 +01:00
Filip Leonarski
1c4dfd03e2 v1.0.0-rc.123 (#30)
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This is an UNSTABLE release.

* jfjoch_broker: Use newer version of Google Ceres for (potential) CUDA 13 compatibility
* jfjoch_broker: Improve performance of generating preview images, especially for large detectors (9M-16M)
* jfjoch_viewer: Improve performance of displaying images, especially for large detectors (9M-16M)
* jfjoch_viewer: Add more color schemes for better image readability
* HDF5: Common mutex for reading and writing HDF5 if both operations were to happen in the same executable
* HDF5: suppress warning if path (upstream group) doesn't exists when checking if leaf exists

Reviewed-on: #30
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
1.0.0-rc.123 		2026-01-30 13:43:09 +01:00
Filip Leonarski
27496b8207 v1.0.0-rc.122 (#29)
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This is an UNSTABLE release.

* jfjoch_broker: Add thresholding to prefer shorter vectors after FFT
* jfjoch_broker: Add experimental mosaicity estimation for rotation experiments (this is work in progress)
* jfjoch_viewer: Display file opening errors
* jfjoch_viewer: When loading files over DBus add retry/back-off till the file is available

Reviewed-on: #29
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
1.0.0-rc.122 		2025-12-16 15:27:40 +01:00
Filip Leonarski
e2b240356c v1.0.0-rc.121 (#28)
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This is an UNSTABLE release.

* jfjoch_broker: Report changes in the image buffer, so viewer doesn't reload constantly
* jfjoch_viewer: Improve performance of loading images
* jfjoch_viewer: Auto-throttle image loading in HTTP-sync / movie modes
* jfjoch_viewer: Auto-foreground calculated with histogram
* jfjoch_viewer: Fix rare segmentation fault

Reviewed-on: #28
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch>
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>
1.0.0-rc.121 		2025-12-12 21:24:20 +01:00