leonarski_f
b2dda42db9
BraggPrediction: Zeta set to 1.0 for stills, otherwise merging gets weird
2026-02-18 14:32:17 +01:00
leonarski_f
ca778992b0
CMake: More options for Ceres backends (to be determined how useful later)
2026-02-18 12:15:07 +01:00
leonarski_f
0599f1e918
Remove RotationScanAccumulator
2026-02-18 09:13:02 +01:00
leonarski_f
091b3808a4
ScaleAndMerge: Add statistics
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2026-02-17 19:54:37 +01:00
leonarski_f
0ed72eb2ea
ScaleAndMerge: Add statistics
2026-02-17 19:46:28 +01:00
leonarski_f
be5dff5370
Reflection: slightly reduce struct size
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2026-02-17 19:23:34 +01:00
leonarski_f
30791b1da0
MXAnalysisAfterFPGA: Add state management to handle disabling functionality properly
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2026-02-17 18:53:41 +01:00
leonarski_f
329be6eb33
ScaleAndMerge: Remove GoF, refactor merging part
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2026-02-17 13:56:12 +01:00
leonarski_f
c4d4b5d570
BraggIntegrate2D: Fix polarization correction division
2026-02-17 13:07:22 +01:00
leonarski_f
175e938616
BraggIntegrate2D: Lorentz-Polarization correction is not directly applied
2026-02-17 12:16:58 +01:00
leonarski_f
832bbe4d89
ScaleAndMerge: Minor fixes
2026-02-15 19:22:03 +01:00
leonarski_f
f0e17fde60
RotationParameters: More flexibility on moving average size
2026-02-15 10:37:09 +01:00
leonarski_f
8325d87982
WriteMmcif: Fix synchrotron site parameters
2026-02-13 20:33:29 +01:00
leonarski_f
936b63a7a9
ScaleAndMerge: Intensities come from merging
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2026-02-12 21:08:47 +01:00
leonarski_f
0ae85a63f9
ScaleAndMerge: sigma calculation included
2026-02-12 20:12:56 +01:00
leonarski_f
38199c480f
jfjoch_process: Save reflections as mmCIF (experimental)
2026-02-12 18:09:35 +01:00
leonarski_f
1dedd3de33
ScaleAndMerge: Add AI generated sigmas
2026-02-12 17:56:32 +01:00
leonarski_f
fd8e263934
jfjoch_process: More fixes
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2026-02-11 20:41:52 +01:00
leonarski_f
34b24133c7
jfjoch_process: More fixes
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2026-02-11 19:59:32 +01:00
leonarski_f
217e86c23b
ScaleAndMerge: Add option to turn off per image mosaicity
2026-02-11 16:22:45 +01:00
leonarski_f
86afb7697e
ScaleAndMerge: Add log-scaling residual
2026-02-11 16:20:14 +01:00
leonarski_f
45e4a642f9
ScaleAndMerge: Print full report (for now) and use max number of threads
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2026-02-10 08:12:47 +01:00
leonarski_f
44802ddac4
Ceres: Build with C++ threads
2026-02-10 08:04:14 +01:00
leonarski_f
247ed0e1eb
BraggPredictionGPU: Fix
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2026-02-09 20:35:55 +01:00
leonarski_f
14402f8175
BraggPredictionRotGPU: Save delta_phi in degrees, not radians
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2026-02-09 18:01:46 +01:00
leonarski_f
e0fd62df2b
ScaleAndMerge: Fix symbol names k --> g, remove setting first image scale factor to 1 (it is too weak), remove radians
2026-02-09 18:00:23 +01:00
leonarski_f
684c3df204
ScaleAndMerge: Fix partiality model
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2026-02-09 12:29:48 +01:00
leonarski_f
f49cb3a6f0
Revert "CCP4: Add library to save MTZs"
...
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This reverts commit d4d1f6cd9c
2026-02-09 10:08:39 +01:00
leonarski_f
d4d1f6cd9c
CCP4: Add library to save MTZs
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2026-02-08 19:55:48 +01:00
leonarski_f
69ebbed8fb
jfjoch_process: Add French-Wilson (completely written by Opus 4.6...need to understand it properly first :) )
2026-02-08 19:02:48 +01:00
leonarski_f
6e28ad3523
jfjoch_process: Include scaling - to be tested
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2026-02-08 18:45:39 +01:00
leonarski_f
7f1f28f8d3
ScaleAndMerge: Merge intensities taken from scaling - variances taken directly from least-squares (with some magic from Opus 4.6, which I don't yet understand)
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2026-02-08 17:22:02 +01:00
leonarski_f
d6265fe589
IndexAndRefine: Save all reflections...to integrate scale and merge
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2026-02-08 14:44:26 +01:00
leonarski_f
068ea2eea7
ScaleAndMerge: Further improvement
2026-02-08 14:36:06 +01:00
leonarski_f
fb493e8ac2
ScaleAndMerge: Add rotation partiality model
2026-02-08 14:26:08 +01:00
leonarski_f
7177d0fed0
BraggPredictionRot: Fix partiality
2026-02-08 14:25:52 +01:00
leonarski_f
e15944ab56
Reflection: Save zeta
2026-02-08 13:10:06 +01:00
leonarski_f
70343ec058
Reflection: Add delta_phi
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2026-02-08 12:42:38 +01:00
leonarski_f
b7a3fb09ef
IndexAndRefine: Fix wrong include file
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2026-02-06 11:40:02 +01:00
leonarski_f
4edebe888e
IndexAndRefine: Simple optimization was not good enough - using a non-linear solver leads to considerably better predictions.
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2026-02-06 11:02:27 +01:00
leonarski_f
e2ab97c09b
XtalOptimizer: Use rotation angle from spot (so it should work for centroid angles)
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2026-02-05 11:22:49 +01:00
leonarski_f
ecc924fe4a
RotationSpotAccumulator: Should be a bit faster
2026-02-05 11:00:02 +01:00
leonarski_f
1f6477e34f
RotationSpotAccumulator: Works, but super slow
2026-02-05 10:53:50 +01:00
leonarski_f
392af14013
RotationSpotAccumulator: Add (Claude 4.5 Opus)
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2026-02-04 14:46:35 +01:00
leonarski_f
e0b7594429
BraggPredictionRot: Getting it (slowly) right with XDS implementation
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2026-02-04 10:49:58 +01:00
leonarski_f
fed8fd0f57
AnalyzeIndexing: Log-likelihood approach for mosaicity calculation (like XDS)
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2026-02-04 08:48:14 +01:00
leonarski_f
f388922515
XtalOptimizer: Fix rotation angles (Claude Opus suggestion :) )
2026-02-04 08:47:40 +01:00
leonarski_f
60e03bfda6
BraggPrediction: Fix for GPU code
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2026-02-03 16:32:15 +01:00
leonarski_f
7edad6b7c1
BraggPrediction: Add partiality calculation
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2026-02-03 14:31:29 +01:00
leonarski_f
07fe4dd3bb
v1.0.0-rc.124 ( #31 )
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This is an UNSTABLE release. This version significantly rewrites code to predict reflection position and integrate them,
especially in case of rotation crystallography. If things go wrong with analysis, it is better to revert to 1.0.0-rc.123.
* jfjoch_broker: Improve refection position prediction and Bragg integration code.
* jfjoch_broker: Align with XDS way of calculating Lorentz correction and general notation.
* jfjoch_writer: Fix saving mosaicity properly in HDF5 file.
* jfjoch_viewer: Introduce high-dynamic range mode for images
* jfjoch_viewer: Ctrl+mouse wheel has exponential change in foreground (+/-15%)
* jfjoch_viewer: Zoom-in numbers have better readability
Reviewed-on: #31
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch >
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch >
2026-02-01 13:29:33 +01:00
leonarski_f