leonarski_f
8a059f3b94
Include lattice count
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2026-06-07 22:07:49 +02:00
leonarski_f
1ca8fec789
NXmx: Save rotationExtraLattices (if present)
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2026-06-07 19:26:38 +02:00
leonarski_f
5edf7c7907
VERSION: 1.0.0-rc.148
2026-06-07 19:10:45 +02:00
leonarski_f
aa50e60f3c
AzIntEngineGPU: Check CUDA errors in constructor
...
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cudaGetDeviceProperties and the two host-to-device cudaMemcpy calls
in the constructor were not error-checked, unlike the calls in Run().
Wrap them in cuda_err() so failures throw instead of passing silently.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com >
2026-06-07 14:00:33 +02:00
leonarski_f
8e4cf98f8a
AzIntEngine: Use integer fill value for azint_count
...
azint_count is std::vector<uint32_t>; initialize it with 0u instead
of the float literal 0.0f.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com >
2026-06-07 13:55:02 +02:00
leonarski_f
1d6d50c162
AzIntEngineCPU: Skip masked/saturated pixels
...
The GPU kernels exclude sentinel pixels (saturated/masked), but the
CPU path summed them blindly, corrupting the azimuthal integration
result and diverging from the GPU output. Skip them on the CPU too,
deriving the sentinels from the pixel type via std::numeric_limits:
the max value (saturated) for any type, plus the min value
(masked/bad) for signed types.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com >
2026-06-07 13:54:48 +02:00
leonarski_f
f40197561c
AzIntEngine: Fix member initialization order UB
...
Members are constructed in declaration order, not initializer-list
order. azint_bins and npixel were computed from the integration
reference before that reference member was bound, which is undefined
behavior and could leave both with garbage values (propagating to
GPU buffer sizes). Reorder declarations so integration is bound first.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com >
2026-06-07 13:52:12 +02:00
leonarski_f
2bffb38c82
IndexingSettings: Figure out max extra lattices in StartMessage + make it changeable
2026-06-07 13:43:47 +02:00
leonarski_f
83377ef3d8
Fixes from Claude Code (to be tested)
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2026-06-06 22:29:42 +02:00
leonarski_f
fa9b5c685f
Fix
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2026-06-05 16:39:44 +02:00
leonarski_f
bf305b33d1
CBOR: Fixes
2026-06-05 16:38:06 +02:00
leonarski_f
ac7e0e5145
CBOR: Fixes
2026-06-05 16:36:18 +02:00
leonarski_f
f9eee954de
Multi lattice search: Small changes (WIP)
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2026-06-05 16:29:54 +02:00
leonarski_f
4c45d1c835
Multi lattice search: WIP - Integration added by Claude Opus (doesn't work :) )
2026-06-05 16:22:35 +02:00
leonarski_f
c1e9babe13
Messages: Add extra information on additional lattices
2026-06-05 15:59:08 +02:00
leonarski_f
c3bb5e1f5f
RotationIndexer: Add refinement of extra lattices + limit number of extra lattices
2026-06-05 15:57:22 +02:00
leonarski_f
5780548964
IndexingSettings: Define limit for extra lattices
2026-06-05 15:56:51 +02:00
leonarski_f
3bcfc08b21
RotationIndexer: Identify and save additional lattices
2026-06-05 15:39:13 +02:00
leonarski_f
3522568d49
MultiLatticeSearch: Works
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2026-06-05 15:05:11 +02:00
leonarski_f
b49c7a766d
MultiLatticeSearch: Work in progress
2026-06-05 14:31:47 +02:00
leonarski_f
83f467d4dc
Add mechanics to save per spot lattice information (WIP)
2026-06-05 14:17:19 +02:00
leonarski_f
74c1a7a828
MultiLatticeSearch: Remove reduced function
2026-06-05 13:51:39 +02:00
leonarski_f
ae67b36160
Adding machinery to include indexing lattice count
2026-06-05 13:34:13 +02:00
leonarski_f
1fc8070118
JFJochReceiver: Plot compression ratio
2026-06-05 12:10:20 +02:00
leonarski_f
02ecf5c32e
MultiLatticeSearch: Explore all valid sign flips when comparing with reference cell
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2026-06-05 11:36:23 +02:00
leonarski_f
64e6b32e1d
UDPSimulator: Fix header guards
2026-06-05 11:22:31 +02:00
leonarski_f
21a8ea51ee
Replace header guards with #pragma once (only keep ones in HLS/driver code)
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2026-06-05 11:06:21 +02:00
leonarski_f
1a3403a25c
CrystalLattice: Don't fix handedness after multiplying
2026-06-05 10:30:34 +02:00
leonarski_f
0c3efda5ac
CrystalLattice: Print function
2026-06-05 07:29:17 +02:00
leonarski_f
736f5f2405
MultiLatticeSearch: Add function
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2026-06-04 21:29:47 +02:00
leonarski_f
fd9a9429b5
LatticeSearch: Return reindex matrix
2026-06-04 21:22:46 +02:00
leonarski_f
56144a6e5f
LatticeSearch: Primitive reduced should return reduced value
2026-06-04 20:02:41 +02:00
leonarski_f
47a066d631
FFTIndexer: Fixes to handle better multiple lattices
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2026-06-04 18:44:36 +02:00
leonarski_f
14b6816552
jfjoch_process: Allow to force lattice for rotation indexing
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2026-06-03 22:25:18 +02:00
leonarski_f
5ffe44892c
FFTIndexer: Use Niggli Reduction
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2026-06-03 13:47:55 +02:00
leonarski_f
ab9db988dd
CrystalLattice: Add Niggli reduction option
2026-06-03 13:34:38 +02:00
leonarski_f
1b1df4a605
CHANGELOG
2026-06-03 12:11:12 +02:00
leonarski_f
ce23a6ccf2
FFTIndexerTest: Update test to sort input vectors + remove old, unused file duplicating this test
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2026-06-03 12:08:45 +02:00
leonarski_f
c1f884279d
Architecture is set in CI file, not in CMake file (so one can still compile with mtune=native, march=native
2026-06-03 12:03:13 +02:00
leonarski_f
4aac2aabd3
jfjoch_test: Reduce precision requirements after switching to -march=x86_64-v3.
2026-06-03 11:51:33 +02:00
leonarski_f
ffcf037205
Make x86-64-v3 default architecture
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2026-06-02 20:30:22 +02:00
leonarski_f
dcef5469e8
jfjoch_azint_test: Add temporary tool to benchmark azint
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2026-06-02 20:05:54 +02:00
leonarski_f
4e4b0a9b33
AzIntEngine: Fixes
2026-06-02 20:05:38 +02:00
leonarski_f
57fc38195e
Save Pixel-to-bin map in JFJochReceiver, and write it compressed in the master file
2026-06-02 18:36:46 +02:00
leonarski_f
a36caa4ca7
Save azimuthal integration map
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2026-06-02 16:11:56 +02:00
leonarski_f
953089009f
AzimuthalIntegrationProfile: Add standard deviation + save pixel count + improve handling of special cases (missing image)
2026-06-02 15:50:11 +02:00
leonarski_f
75de40f52b
v1.0.0-rc.147 ( #57 )
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This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144.
* jfjoch_viewer: Add reciprocal space viewer
* jfjoch_process: Two pass algorithm that does spot finding/indexing + integration of full dataset
* jfjoch_process: Improve logic for rotation indexer, to make execution more deterministic (still work in progress)
Reviewed-on: #57
Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch >
Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch >
2026-06-02 11:49:24 +02:00
leonarski_f
fc68a9baed
v1.0.0-rc.146 ( #56 )
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This is an UNSTABLE release. The release has significant modifications for data processing - in case of troubles go back to 1.0.0-rc.144.
jfjoch_process: Generate a dedicated file (_process.h5), which can be used as a replacement for the _master.h5 file for a reanalyzed dataset.
jfjoch_process: Improve the performance of scaling and merging, implement on the fly scaling.
jfjoch_writer: All final data analysis results are repopulated in the _master.h5 file.
jfjoch_scale: Dedicated tool for rescaling/merging existing data.
jfjoch_viewer: Fix bugs where pixel labels where displayed on a wrong pixel.
WARNING! Scaling and merging are experimental at the moment, and may not provide reasonable results for the time being.
Reviewed-on: #56
2026-05-28 18:48:35 +02:00
leonarski_f
75f1c5f954
SHIM library improvements from the HDF Group
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2026-05-08 11:39:51 +02:00
leonarski_f
caef26873e
v1.0.0-rc.145 ( #55 )
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This is an UNSTABLE release. The release has significant modifications for HDF5 writing logic - in case of troubles go back to 1.0.0-rc.144.
* **Default HDF5 writing mode is with VDS, not soft-links** - this improves DIALS compatibility and makes format more future-proof, NXmx legacy format might be phased-out in the future.
* XDS plugin: Improve performance of VDS reading.
* jfjoch_writer: Significant improvement on how file systems I/O are handled through a dedicated pass-through VFD.
* jfjoch_writer: Clean-up of HDF5 routines to better handle issues.
Reviewed-on: #55
2026-05-06 21:50:02 +02:00
leonarski_f