7f1f28f8d3fbf4bf763547614b202e48296746fe
1095 Commits
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 leonarski_f
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7f1f28f8d3 |
ScaleAndMerge: Merge intensities taken from scaling - variances taken directly from least-squares (with some magic from Opus 4.6, which I don't yet understand)
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leonarski_f
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d6265fe589 |
IndexAndRefine: Save all reflections...to integrate scale and merge
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leonarski_f
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068ea2eea7 | ScaleAndMerge: Further improvement | ||
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leonarski_f
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fb493e8ac2 | ScaleAndMerge: Add rotation partiality model | ||
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leonarski_f
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7177d0fed0 | BraggPredictionRot: Fix partiality | ||
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leonarski_f
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e15944ab56 | Reflection: Save zeta | ||
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leonarski_f
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666b52ffc1 | JFJochHDF5Reader: Read delta phi | ||
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leonarski_f
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70343ec058 |
Reflection: Add delta_phi
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leonarski_f
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b7a3fb09ef |
IndexAndRefine: Fix wrong include file
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leonarski_f
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4edebe888e |
IndexAndRefine: Simple optimization was not good enough - using a non-linear solver leads to considerably better predictions.
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leonarski_f
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aac982a239 |
DiffractionSpot: Consistent definition of rotation angle
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leonarski_f
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cb7e7ad576 |
XtalOptimizer: Fix test to include phi angle
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leonarski_f
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ae4c28f127 |
XtalOptimizer: Fix test to include phi angle
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leonarski_f
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e2ab97c09b |
XtalOptimizer: Use rotation angle from spot (so it should work for centroid angles)
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leonarski_f
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f9cc99f3c0 | SpotToSave: Include phi angle of the spot | ||
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leonarski_f
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a40e4118e6 | DiffractionGeometry: Store rotation matrix | ||
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leonarski_f
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ecc924fe4a | RotationSpotAccumulator: Should be a bit faster | ||
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leonarski_f
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1f6477e34f | RotationSpotAccumulator: Works, but super slow | ||
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leonarski_f
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392af14013 |
RotationSpotAccumulator: Add (Claude 4.5 Opus)
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leonarski_f
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787e781eb2 |
jfjoch_tests: Add more tests
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leonarski_f
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e0b7594429 |
BraggPredictionRot: Getting it (slowly) right with XDS implementation
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leonarski_f
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fed8fd0f57 |
AnalyzeIndexing: Log-likelihood approach for mosaicity calculation (like XDS)
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leonarski_f
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f388922515 | XtalOptimizer: Fix rotation angles (Claude Opus suggestion :) ) | ||
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leonarski_f
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60e03bfda6 |
BraggPrediction: Fix for GPU code
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leonarski_f
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7edad6b7c1 |
BraggPrediction: Add partiality calculation
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leonarski_f
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88701b31db | jfjoch_writer: Save partiality | ||
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leonarski_f
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07fe4dd3bb |
v1.0.0-rc.124 (#31)
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This is an UNSTABLE release. This version significantly rewrites code to predict reflection position and integrate them, especially in case of rotation crystallography. If things go wrong with analysis, it is better to revert to 1.0.0-rc.123. * jfjoch_broker: Improve refection position prediction and Bragg integration code. * jfjoch_broker: Align with XDS way of calculating Lorentz correction and general notation. * jfjoch_writer: Fix saving mosaicity properly in HDF5 file. * jfjoch_viewer: Introduce high-dynamic range mode for images * jfjoch_viewer: Ctrl+mouse wheel has exponential change in foreground (+/-15%) * jfjoch_viewer: Zoom-in numbers have better readability Reviewed-on: #31 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.124 |
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leonarski_f
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1c4dfd03e2 |
v1.0.0-rc.123 (#30)
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This is an UNSTABLE release. * jfjoch_broker: Use newer version of Google Ceres for (potential) CUDA 13 compatibility * jfjoch_broker: Improve performance of generating preview images, especially for large detectors (9M-16M) * jfjoch_viewer: Improve performance of displaying images, especially for large detectors (9M-16M) * jfjoch_viewer: Add more color schemes for better image readability * HDF5: Common mutex for reading and writing HDF5 if both operations were to happen in the same executable * HDF5: suppress warning if path (upstream group) doesn't exists when checking if leaf exists Reviewed-on: #30 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.123 |
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leonarski_f
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27496b8207 |
v1.0.0-rc.122 (#29)
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This is an UNSTABLE release. * jfjoch_broker: Add thresholding to prefer shorter vectors after FFT * jfjoch_broker: Add experimental mosaicity estimation for rotation experiments (this is work in progress) * jfjoch_viewer: Display file opening errors * jfjoch_viewer: When loading files over DBus add retry/back-off till the file is available Reviewed-on: #29 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.122 |
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leonarski_f
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e2b240356c |
v1.0.0-rc.121 (#28)
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This is an UNSTABLE release. * jfjoch_broker: Report changes in the image buffer, so viewer doesn't reload constantly * jfjoch_viewer: Improve performance of loading images * jfjoch_viewer: Auto-throttle image loading in HTTP-sync / movie modes * jfjoch_viewer: Auto-foreground calculated with histogram * jfjoch_viewer: Fix rare segmentation fault Reviewed-on: #28 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.121 |
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leonarski_f
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a0a659a02c |
v1.0.0-rc.120 (#27)
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This is an UNSTABLE release. * jfjoch_broker: Improve performance of binary plot export Reviewed-on: #27 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.120 |
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leonarski_f
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36d0507758 |
v1.0.0-rc.119 (#26)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Add binary export of data analysis plots over OpenAPI * jfjoch_broker: Minor fixes to HTTP error handling * jfjoch_viewer: Prefer binary plots over JSON plots * jfjoch_viewer: Change foreground with F button + wheel * jfjoch_viewer: Change way how angles are displayed * jfjoch_viewer: Display resolution of the mouse cursor in top left corner Reviewed-on: #26 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.119 |
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leonarski_f
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b02c412d59 |
v1.0.0-rc.118 (#25)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Fix issue when HTTP sync silently disconnected when it was enabled when the broker was starting measurement. * jfjoch_broker: Add protections on time of geometry optimization and reduce rotation recalculations Reviewed-on: #25 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.118 |
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leonarski_f
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d1a4c19ef3 |
v1.0.0-rc.117 (#24)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Add ROI results to the dataset info plots * jfjoch_writer: Remove HTTP interface, as it is not needed/used at the moment Reviewed-on: #24 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.117 |
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59911788d7 |
v1.0.0-rc.116 (#23)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_viewer: Add binning options in the context menu Reviewed-on: #23 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.116 |
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leonarski_f
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c8bbf8a186 |
v1.0.0-rc.115 (#22)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Default spot finding settings can be configured via config JSON * jfjoch_viewer: FFT analysis of data in the dataset plot Reviewed-on: #22 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.115 |
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leonarski_f
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68d121ab3a |
v 1.0.0-rc.114b (#21)
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Version not properly set Reviewed-on: #21 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.114 |
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leonarski_f
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6d08310622 |
v1.0.0-rc.114 (#20)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Fix generating JPEG images with resolution estimation Reviewed-on: #20 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch> |
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31a357fa57 |
v1.0.0-rc.113 (#19)
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This is an UNSTABLE release and not recommended for production use (please use rc.111 instead). * jfjoch_broker: Improve handling of rotation indexing * jfjoch_broker: More information saved in CBOR end message (WIP) * jfjoch_writer: Save rotation indexing lattice parameters and Niggli class * jfjoch_viewer: Remove (for now) primitive cell information Reviewed-on: #19 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.113 |
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leonarski_f
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06949caf1a |
v1.0.0-rc.112 (#18)
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This is an UNSTABLE release and not recommended for production use (please use rc.11 instead). * jfjoch_broker: Experimental rotation (3D) indexing * jfjoch_broker: Minor fix to error in optimizer potentially returning NaN values Reviewed-on: #18 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.112 |
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leonarski_f
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9bc71cfddc |
v1.0.0-rc.111 (#17)
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This is an UNSTABLE release. * jfjoch_viewer: Remove 3D lattice viewer (not really useful at this moment) * jfjoch_viewer: Fix auto contrast not refreshing image Reviewed-on: #17 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.111 |
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leonarski_f
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224cc8b89c |
v1.0.0-rc.110 (#16)
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This is an UNSTABLE release. * jfjoch_broker: Add auto-contrast option for preview images * Frontend: Add logo image * jfjoch_viewer: Add logo image * jfjoch_viewer: For image chart allow to set min value to zero * jfjoch_viewer: For resolution estimation plots, visualization uses 1/d^2 as measure * jfjoch_viewer: Add 3D unit cell visualization (experimental/WIP/not really there) * Documentation: Add logo image Reviewed-on: #16 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.110 |
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leonarski_f
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05410d7cb3 |
v1.0.0-rc.109 (#15)
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This is an UNSTABLE release. * jfjoch_viewer: Add keyboard shortcuts and option to copy image to clipboard * jfjoch_broker: Fix bit-width and exposure time for PSI EIGER detectors Reviewed-on: #15 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.109 |
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d53e93023b |
v1.0.0-rc.108 (#13)
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This is an UNSTABLE release. * jfjoch_viewer: Fix bug when resolution estimation/B-Factor/Profile radius were not set (NaN) * jfjoch_viewer: Show spots is off by default, resolution ring mode is enabled by default * jfjoch_viewer: Fit to window of image is now default when size of the grid changes Reviewed-on: #13 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.108 |
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leonarski_f
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f44c6520a8 |
v1.0.0-rc.107 (#12)
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This is an UNSTABLE release. * jfjoch_viewer: Minor polishing of new functionality * jfjoch_broker: User NaN for empty azimuthal bins Reviewed-on: #12 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.107 |
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ddcc24fba8 |
v1.0.0-rc.106 (#11)
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This is an UNSTABLE release. * jfjoch_viewer: Allow for multiple dataset info plots * jfjoch_viewer: Highlight current element in grid Reviewed-on: #11 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.106 |
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leonarski_f
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a6b5cb5629 |
v1.0.0-rc.105 (#10)
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This is an UNSTABLE release. * jfjoch_viewer: Clean-up widgets slightly * jfjoch_viewer: Limit right panel to 600 pixels * jfjoch_viewer: Parse crystal symmetry type * jfjoch_viewer: Grid scan view takes color map and can be fit to zoom Reviewed-on: #10 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.105 |
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95acf3aba3 |
v1.0.0-rc.104 (#9)
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This is an UNSTABLE release. jfjoch_writer: Fix and improve the way grid scan geometry is saved (non-NXmx extension makes it way easier) jfjoch_viewer: Display grid scan results in 2D (work in progress) jfjoch_viewer: Improve auto-scaling on start of images (work in progress) jfjoch_viewer: Add B-factor and resolution estimate to the dataset info plots Reviewed-on: #9 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.104 |
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33aeb64e4c |
v1.0.0-rc.103 (#8)
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This is an UNSTABLE release. * jfjoch_viewer: Minor improvements to the viewer * jfjoch_broker: Change behavior for modular detectors: coordinates of 0-th pixel can be now arbitrary and detector will be cropped to the smallest rectangle limited by module coordinates Reviewed-on: #8 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.103 |
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v1.0.0-rc.102 (#7)
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This is an UNSTABLE release. * jfjoch_viewer: Minor improvements to the viewer Reviewed-on: #7 Co-authored-by: Filip Leonarski <filip.leonarski@psi.ch> Co-committed-by: Filip Leonarski <filip.leonarski@psi.ch>1.0.0-rc.102 |