Merge pull request #1178 from slsdetectorgroup/main_910/conda_build_fix

fixed conda build

.github/workflows/cmake.yml

@@ -17,7 +17,7 @@ jobs:
       - uses: actions/checkout@v3
       - uses: awalsh128/cache-apt-pkgs-action@latest
         with:
-          packages: libzmq3-dev libhdf5-dev qtbase5-dev qt5-qmake libqt5svg5-dev
+          packages: libhdf5-dev qtbase5-dev qt5-qmake libqt5svg5-dev libpng-dev libtiff-dev
           version: 1.0
 
       - name: Configure CMake

CMakeLists.txt

@@ -2,7 +2,15 @@
 # Copyright (C) 2021 Contributors to the SLS Detector Package
 cmake_minimum_required(VERSION 3.14)
 project(slsDetectorPackage)
-set(PROJECT_VERSION 7.0.0)
+
+# Read VERSION file into project version
+set(VERSION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/VERSION")
+file(READ "${VERSION_FILE}" VERSION_CONTENT)
+string(STRIP "${VERSION_CONTENT}" PROJECT_VERSION_STRING)
+set(PROJECT_VERSION ${PROJECT_VERSION_STRING})
+
+# Pass it to the compiler
+add_compile_definitions(SLS_DET_VERSION="${PROJECT_VERSION}")
 
 set(CMAKE_CXX_FLAGS_RELEASE "-O3 -DNDEBUG")
 
@@ -33,7 +41,7 @@ else()
     # Standard behaviour use libzmq included in this repo (libs/libzmq)
     FetchContent_Declare(
         libzmq
-        URL ${CMAKE_SOURCE_DIR}/libs/libzmq/libzmq-4.3.4.tar.gz
+        URL ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq-4.3.4.tar.gz
         URL_HASH MD5=cc20b769ac10afa352e5ed2769bb23b3
     )
 endif()
@@ -148,7 +156,6 @@ set(SLS_INTERNAL_QWT_DIR ${CMAKE_CURRENT_SOURCE_DIR}/libs/qwt-6.1.5)
 set(ClangFormat_EXCLUDE_PATTERNS    "build/" 
                                     "libs/" 
                                     "slsDetectorCalibration/" 
-                                    "ctbGui/" 
                                     "manual/"
                                     "python/"
                                     "sample/"
@@ -232,6 +239,8 @@ if (NOT TARGET slsProjectCSettings)
                                                 -Wredundant-decls
                                                 -Wdouble-promotion
                                                 -Werror=return-type
+                                                -Wno-format-overflow 
+                                                -Wno-format-truncation
                                     )
     sls_disable_c_warning("-Wstringop-truncation")
 endif()
@@ -240,10 +249,11 @@ endif()
 if(SLS_USE_SANITIZER)
     target_compile_options(slsProjectOptions INTERFACE -fsanitize=address,undefined -fno-omit-frame-pointer)
     target_link_libraries(slsProjectOptions INTERFACE -fsanitize=address,undefined)
-    # target_compile_options(slsProjectOptions INTERFACE -fsanitize=thread)
-    # target_link_libraries(slsProjectOptions INTERFACE -fsanitize=thread)
+    #target_compile_options(slsProjectOptions INTERFACE -fsanitize=thread -fno-omit-frame-pointer)
+    #target_link_libraries(slsProjectOptions INTERFACE -fsanitize=thread)
 endif()
 
+
 if(SLS_TUNE_LOCAL)
     target_compile_options(slsProjectOptions INTERFACE -mtune=native -march=native)
 endif()
@@ -294,19 +304,20 @@ if (SLS_USE_INTEGRATION_TESTS)
 endif (SLS_USE_INTEGRATION_TESTS)
 
 if (SLS_USE_PYTHON)
-    find_package (Python 3.6 COMPONENTS Interpreter Development)
+    find_package (Python 3.8 COMPONENTS Interpreter Development)
     if(SLS_FETCH_PYBIND11_FROM_GITHUB)
         FetchContent_Declare(
             pybind11
             GIT_REPOSITORY https://github.com/pybind/pybind11
-            GIT_TAG        v2.11.0
+            GIT_TAG        v2.13.6
         )
 
     else()
+    # https://github.com/pybind/pybind11/releases
         FetchContent_Declare(
             pybind11
-            URL ${CMAKE_SOURCE_DIR}/libs/pybind11/v2.11.0.tar.gz
-            URL_HASH MD5=90c4946e87c64d8d8fc0ae4edf35d780
+            URL ${CMAKE_CURRENT_SOURCE_DIR}/libs/pybind11/v2.13.6.tar.gz
+            URL_HASH MD5=a04dead9c83edae6d84e2e343da7feeb
         )
     endif()
     FetchContent_MakeAvailable(pybind11)
@@ -315,7 +326,7 @@ if (SLS_USE_PYTHON)
 endif(SLS_USE_PYTHON)
 
 if (SLS_USE_CTBGUI)
-    add_subdirectory(ctbGui)
+    add_subdirectory(pyctbgui)
 endif(SLS_USE_CTBGUI)
 
 configure_file( .clang-tidy  

README.md

@@ -2,7 +2,11 @@
 Before building from source make sure that you have the [software wiki](https://slsdetectorgroup.github.io/devdoc/dependencies.html) installed. If installing using conda, conda will manage the dependencies. Avoid also installing packages with pip. 
 
 ## Documentaion
-Detailed documentation can be found in the [software wiki](https://slsdetectorgroup.github.io/devdoc/index.html) and on the [official site](https://www.psi.ch/en/detectors/software).
+Detailed documentation including installation can be found in the [software wiki](https://slsdetectorgroup.github.io/devdoc/index.html).
+
+Different releases can be found on the [official site](https://www.psi.ch/en/lxn/software-releases).
+
+Firmware compatiblity can be found in [firmware page](https://github.com/slsdetectorgroup/slsDetectorFirmware)
 
 ## Installation
 
@@ -42,33 +46,20 @@ conda search slsdet
 conda search slsdetgui
 ```
 
-### 2. Build from source
+## 2. Build from source
 
-##### 2.1 Download Source Code from github
+### 2.1 Download Source Code from github
 ```
 git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch 7.0.0
 ```
 
-**Pybind for Python**<br>
-* **v7.0.0+**:
-pybind11 packaged into 'libs/pybind'. No longer a submodule. No need for "recursive" or "submodule update".
- 
-* **Older versions**:
-   pybind11 is a submodule. Must be cloned using "recursive" and updated when switching between versions using the following commands.
-
-```
-# clone using recursive to get pybind11 submodule
-git clone --recursive https://github.com/slsdetectorgroup/slsDetectorPackage.git
-
-# update submodule when switching between releases
-cd slsDetectorPackage
-git submodule update --init
-```
-
-##### 2.2 Build from source
+> **Note:** For v6.x.x of slsDetectorPackage and older, refer [pybind11 notes on cloning](#Pybind-and-Zeromq).
 
 
-###### Build using CMake
+### 2.2 Build from source
+
+
+### Build using CMake
 
 ```
 # outside slsDetecorPackage folder
@@ -94,26 +85,28 @@ Instead of the cmake command, one can use ccmake to get a list of options to con
 ccmake ..
  
 # choose the options
-# first press [c] - configure
+# first press [c] - configure (unil you see [g])
 # then press [g] - generate
 ```
 
 |Example cmake options|Comment|
 |---|---|
 | -DSLS_USE_PYTHON=ON            | Python                                 |   
-| -DPython_FIND_VIRTUALENV=ONLY  | Python from only the conda environment |
-| -DZeroMQ_HINT=/usr/lib64       | Use system zmq instead                 |    
+| -DPython_FIND_VIRTUALENV=ONLY  | Python from only the conda env         | 
 | -DSLS_USE_GUI=ON               | GUI                                    |
+| -DSLS_USE_HDF5=ON              | HDF5                                   |
+| -DSLS_USE_SIMULATOR=ON         | Simulator                              |
 
+> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for cmake option to hint library location](#Pybind-and-Zeromq).
 
-###### Build using in-built cmk.sh script
+### Build using in-built cmk.sh script
 
 ```
 The binaries are generated in slsDetectorPackage/build/bin directory.
 
-Usage: ./cmk.sh [-b] [-c] [-d <HDF5 directory>] [e] [g] [-h] [i] [-j <Number of threads>] 
-[-k <CMake command>] [-l <Install directory>] [m] [n] [-p] [-q <Zmq hint directory>] 
-[r] [s] [t] [u] [z]  
+Usage: $0 [-b] [-c] [-d <HDF5 directory>] [-e] [-g] [-h] [-i]
+[-j <Number of threads>] [-k <CMake command>] [-l <Install directory>]
+[-m] [-n] [-p] [-r] [-s] [-t] [-u] [-z]
 -[no option]: only make
 -b: Builds/Rebuilds CMake files normal mode
 -c: Clean
@@ -128,7 +121,6 @@ Usage: ./cmk.sh [-b] [-c] [-d <HDF5 directory>] [e] [g] [-h] [i] [-j <Number of
 -m: Manuals
 -n: Manuals without compiling doxygen (only rst)
 -p: Builds/Rebuilds Python API
--q: Zmq hint directory
 -r: Build/Rebuilds only receiver
 -s: Simulator
 -t: Build/Rebuilds only text client
@@ -145,11 +137,14 @@ Usage: ./cmk.sh [-b] [-c] [-d <HDF5 directory>] [e] [g] [-h] [i] [-j <Number of
 # new build, python and compile in parallel:
 ./cmk.sh -cbpj5
 
-#To use the system zmq (/usr/lib64) instead
-./cmk.sh -cbj5 -q /usr/lib64
+#For rebuilding only certain sections
+./cmk.sh -tg #only text client and gui
+./cmk.sh -r #only receiver
 ```
 
-###### Build on old distributions
+> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for cmk script option to hint library location](#Pybind-and-Zeromq).
+
+### Build on old distributions
 
 If your linux distribution doesn't come with a C++11 compiler (gcc>4.8) then 
 it's possible to install a newer gcc using conda and build the slsDetectorPackage
@@ -166,7 +161,10 @@ cmake ../slsDetectorPackage -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
 make -j12
 ```
 
-###### Build slsDetectorGui (Qt5)
+> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for dependencies for conda](#Pybind-and-Zeromq).
+
+
+### Build slsDetectorGui (Qt5)
 
 1. Using pre-built binary on conda
 ```
@@ -180,7 +178,14 @@ yum install qt5-qtbase-devel.x86_64
 yum install qt5-qtsvg-devel.x86_64 
 ```
 
-3. Using conda
+3. Using system installation on RHEL8
+```
+yum install qt5-qtbase-devel.x86_64
+yum install qt5-qtsvg-devel.x86_64 
+yum install expat-devel.x86_64
+```
+
+4. Using conda
 ```
 #Add channels for dependencies and our library
 conda config --add channels conda-forge
@@ -208,13 +213,15 @@ cd slsDetectorPackage
 ./cmk.sh -cbgj9
 ```
 
-###### Build documentation from package
+> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for dependencies for conda](#Pybind-and-Zeromq).
+
+### Build documentation from package
 The documentation for the slsDetectorPackage is build using a combination 
 of Doxygen, Sphinx and Breathe. The easiest way to install the dependencies
 is to use conda 
 
 ```
-conda create -n myenv python sphinx_rtd_theme breathe
+conda create -n myenv python=3.12 sphinx sphinx_rtd_theme breathe doxygen numpy
 ```
 
 ```
@@ -228,6 +235,47 @@ make rst # rst only, saves time in case the API did not change
 ```
 
 
+
+## Pybind and Zeromq
+
+### Pybind11 for Python
+**v8.0.0+**:
+pybind11 is built
+* by default from tar file in repo (libs/pybind/v2.1x.0.tar.gz)
+* or use advanced option SLS_FETCH_PYBIND11_FROM_GITHUB [link].
+   * v9.0.0+: pybind11 (v2.13.6)
+   * v8.x.x : pybind11 (v2.11.0)
+
+**v7.x.x**:
+pybind11 packaged into ‘libs/pybind’. No longer a submodule. No need for “recursive” or “submodule update”.
+
+**Older versions**:
+pybind11 is a submodule. Must be cloned using “recursive” and updated when switching between versions using the following commands.
+
+```
+# Note: Only for v6.x.x versions and older
+
+# clone using recursive to get pybind11 submodule
+git clone --recursive https://github.com/slsdetectorgroup/slsDetectorPackage.git
+
+# update submodule when switching between releases
+cd slsDetectorPackage
+git submodule update --init
+```
+
+### Zeromq
+**v8.0.0+**:
+zeromq (v4.3.4) is built
+* by default from tar file in repo (libs/libzmq/libzmq-4.3.4.tar.gz)
+* or use advanced option SLS_FETCH_ZMQ_FROM_GITHUB [link].
+
+**v7.x.x and older**:
+zeromq-devel must be installed and one can hint its location using
+* cmake option:’-DZeroMQ_HINT=/usr/lib64’ or
+* option ‘-q’ in cmk.sh script: : ./cmk.sh -cbj5 -q /usr/lib64
+* ‘zeromq’ dependency added when installing using conda
+
+
 ## Support
     dhanya.thattil@psi.ch
     erik.frojdh@psi.ch

RELEASE.txt

@@ -1,21 +1,15 @@
-SLS Detector Package Major Release 7.x.x released on xx.xx.2023
+SLS Detector Package Minor Release 9.1.0 released on 28.03.2025
 ===============================================================
 
-This document describes the differences between v7.x.x and v7.0.2   
+This document describes the differences between v9.1.0 and v9.0.0   
 
 
 
     CONTENTS
     --------
-    1           New, Changed or Resolved Features
-        1.1     Compilation
-        1.2     Callback
-        1.3     Python
-        1.4     Client
-        1.5     Detector Server
-        1.6     Simulator
-        1.7     Receiver
-        1.8     Gui
+    1           Changes
+        1.1     New or Changed Features
+        1.2     Resolved Features
     2           On-board Detector Server Compatibility
     3           Firmware Requirements
     4           Kernel Requirements
@@ -24,13 +18,130 @@ This document describes the differences between v7.x.x and v7.0.2
 
 
 
-1 New, Changed or Resolved Features
-=====================================
+1 Changes
+==========
 
 
-- moench being made compatible with jungfrau 2.0 boards (jungfrau structure, away from ctb)
-- eiger febl and feb in versions
-- fix ctb slow adcs
+
+1.1 New or Changed Features
+============================
+
+
+    Receiver
+    --------
+
+
+    *   Frame Synchronizer (experimental)
+        Added a new binary, similar to slsMultiReceiver, to collect images from
+        several receivers and stream them out as a ZMQ  multipart message 
+        (one part for each UDP port). No reconstuction of the image. Includeds start 
+        and end ZMQ messages as well for the start and end callback parameters.
+
+
+    Documentation
+    -------------
+
+
+    *   Command line - multi module and multi detector indices
+        Help on this topic has been added to the 'Command line' topic.
+
+
+    *   Row and column index (UDP header or callback)
+        Help on how this is determined from the hostname is added to the 'UDP
+        Header' and the 'Quick Start Guide' topics. Also added to the help in '
+        hostname' command line help. Please note that this can be overwritten by
+        corresponding row and column commands.
+
+
+
+1.2 Resolved Features 
+======================
+
+
+    Firmware
+    ---------
+
+
+    *   [Jungfrau] Column select and filter resistor
+        Configuration fix for chip v1.1 for these parameters
+
+
+    Firmware &/ On-board Detector Server
+    ------------------------------------
+
+
+    *   [Jungfrau] Timing Info Decoder 
+        Only allowed for hardware v2.0 now.
+
+
+    *   [Jungfrau] Auto Comparator Disable - chip v1.0
+        Previously, this mode for chip v1.0 automatically disabled the on-chip
+        gain switching compatator after a fixed portion of the exposure time.
+        Now, one must set also the comparator disable time using 'compdisabletime'
+        just as in chip v1.1.
+
+
+    *   [Mythen3] Default period on server start up is 0 now.
+        
+
+    Client
+    -------
+
+
+    *   Command line - Multi detector index inside file
+        Multi detector index '[index]-' was ignored silently in the config/parameter
+        file since 5.0.0. Now, it will throw an exception. Please use the multi
+        detector index on the 'config' or 'parameter' command instead.
+
+
+    *   [Mythen3] patternX command autocompletes the argument to a path now.
+
+
+    Receiver
+    --------
+
+
+    *   Multiple Receiver objects in multiple threads
+        slsMultiReceiver uses child processes, but if user rewrote to use multiple
+        receiver objects in multiple threads instead, a callback mutex is now
+        implemented to handle the locking mechanism between threads for the callbacks. 
+
+
+    *   Removed potentially unsafe str().c_str() calls.
+
+
+    *   slsMultiReceiver Ctrl + C
+        Now cleans up properly upon Ctrl + C, including exiting the Arping thread.
+
+    
+    *   slsMultiReceiver version
+        --version or -v now gives the version of slsMultiReceiver.
+
+ 
+    ZMQ
+    ---
+
+
+    *   [Moench] Reduced significant print out in zmq processing using energy
+        threshold.
+
+
+    *   [Moench] Zmq dummy packet restreaming command did nothing
+        Temporary solution was to move from 'stop' to 'rx_stop' as 'stop' did not
+        go further if module is idle.
+
+
+    *   [Moench] Too many Zmq dummy packets- unclear end in acquire
+        Give time to process dummy packet before restreaming it and wait more 
+        before restreaming to reduce amoutn of zmq dummy packets to process.
+
+
+    Simulators
+    -----------
+
+
+    *   [Jungfrau][Moench] Slightly faster transmistting time by removing sleeping
+        only if there is a transmission delay
 
 
 
@@ -38,22 +149,24 @@ This document describes the differences between v7.x.x and v7.0.2
 ==========================================
 
 
-    Eiger       7.0.0
-    Jungfrau    7.0.2
-    Mythen3     7.0.0
-    Gotthard2   7.0.0
-    Gotthard    7.0.0
-    Moench      7.0.0
-    Ctb         7.0.0
+    Eiger       9.0.0
+    Jungfrau    9.1.0
+    Mythen3     9.1.0
+    Gotthard2   9.0.0
+    Gotthard    9.0.0
+    Moench      9.0.0
   
 
     On-board Detector Server Upgrade
     --------------------------------
 
     From v6.1.0 (without tftp):
+        update only on-board detector server
             Using command 'updatedetectorserver'
-    From 5.0.0 (with tftp):
-        Using command 'copydetectorserver'
+
+
+        udpate both on-board detector server and firmware simultaneously
+            Using command 'update'
 
     Instructions available at
         https://slsdetectorgroup.github.io/devdoc/serverupgrade.html
@@ -65,22 +178,20 @@ This document describes the differences between v7.x.x and v7.0.2
 ========================
 
 
-    Eiger       20.02.2023 (v31)
+    Eiger       02.10.2023 (v32)                    (updated in 7.0.3)
     
-    Jungfrau    04.11.2022 (v1.4, HW v1.0) 
-                03.11.2022 (v2.4, HW v2.0)
+    Jungfrau    09.02.2025 (v1.6, HW v1.0)          (updated in 9.1.0)
+                08.02.2025 (v2.6, HW v2.0)          (updated in 9.1.0)
 
-    Mythen3     24.01.2023 (v1.4)
+    Mythen3     13.11.2024 (v2.0)                   (updated in 9.0.0)
 
-    Gotthard2   23.11.2022 (v0.3)
+    Gotthard2   03.10.2024 (v1.0)                   (updated in 9.0.0)
+
+    Moench      26.10.2023 (v2.0)                   (updated in 8.0.2)
 
     Gotthard    08.02.2018 (50um and 25um Master)
                 09.02.2018 (25 um Slave) 
 
-    Moench      05.12.2022 (v0.3)
-
-    Ctb         03.04.2023 (v1.2?)
-
 
     Detector Upgrade
     ----------------
@@ -92,7 +203,6 @@ This document describes the differences between v7.x.x and v7.0.2
     Mythen3    via command <.rbf>
     Gotthard2  via command <.rbf>
     Moench     via command <.pof>
-    Ctb        via command <.pof>
 
     Gotthard cannot be upgraded remotely  
 
@@ -100,7 +210,7 @@ This document describes the differences between v7.x.x and v7.0.2
         upgrade 
             Using command 'programfpga' or
 
-        udpate both server and firmware simultaneously
+        udpate both on-board detector server and firmware simultaneously
             Using command 'update'
 
 
@@ -113,6 +223,7 @@ This document describes the differences between v7.x.x and v7.0.2
 4 Kernel Requirements
 ======================
 
+
     Blackfin 
     --------
     Latest version: Fri Oct 29 00:00:00 2021
@@ -120,10 +231,12 @@ This document describes the differences between v7.x.x and v7.0.2
     Older ones will work, but might have issues with programming firmware via
     the package.
 
+
     Nios
     -----
     Compatible version: Mon May 10 18:00:21 CEST 2021
 
+
     Kernel Upgrade
     ---------------
     Eiger   via bit files

VERSION

@@ -0,0 +1 @@
+9.1.0

bash_autocomplete.sh

@@ -0,0 +1 @@
+slsDetectorSoftware/generator/autocomplete/bash_autocomplete.sh

cmk.sh

@@ -26,7 +26,7 @@ CMAKE_PRE=""
 CMAKE_POST=""
 
 usage() { echo -e "
-Usage: $0 [-b] [-c] [-d <HDF5 directory>] [e] [g] [-h] [i] [-j <Number of threads>] [-k <CMake command>] [-l <Install directory>] [m] [n] [-p] [r] [s] [t] [u] [z]  
+Usage: $0 [-b] [-c] [-d <HDF5 directory>] [-e] [-g] [-h] [-i] [-j <Number of threads>] [-k <CMake command>] [-l <Install directory>] [-m] [-n] [-p] [-r] [-s] [-t] [-u] [-z]  
  -[no option]: only make
  -b: Builds/Rebuilds CMake files normal mode
  -c: Clean

conda-recepie/conda_build_config.yaml

@@ -1,8 +0,0 @@
-python:
-    - 3.8
-    - 3.9
-    - 3.10
-    - 3.11
-    
-numpy: 
-    - 1.17

conda-recipe/build.sh

@@ -1,8 +1,12 @@
 # SPDX-License-Identifier: LGPL-3.0-or-other
 # Copyright (C) 2021 Contributors to the SLS Detector Package
 
-mkdir build
-mkdir install
+if [ ! -d "build" ]; then
+    mkdir build
+fi
+if [ ! -d "install" ]; then
+    mkdir install
+fi
 cd build
 cmake .. \
       -DCMAKE_PREFIX_PATH=$CONDA_PREFIX \

conda-recipe/build_pylib.sh

@@ -2,5 +2,10 @@
 # Copyright (C) 2021 Contributors to the SLS Detector Package
 
 echo "|<-------- starting python build"
+
 cd python
+
+# copy VERSION into slsdet for installation
+cp ../VERSION slsdet/VERSION
+
 ${PYTHON} setup.py install 

conda-recipe/conda_build_config.yaml

@@ -0,0 +1,14 @@
+python:
+    - 3.8
+    - 3.9
+    - 3.10
+    - 3.11 
+    - 3.12
+    - 3.13
+
+
+c_stdlib:
+  - sysroot                    # [linux]
+
+c_stdlib_version:              # [linux]
+  - 2.17                       # [linux]

conda-recipe/copy_lib.sh

@@ -11,6 +11,7 @@ cp build/install/lib/* $PREFIX/lib/
 
 #Binaries
 cp build/install/bin/sls_detector_acquire $PREFIX/bin/.
+cp build/install/bin/sls_detector_acquire_zmq $PREFIX/bin/.
 cp build/install/bin/sls_detector_get $PREFIX/bin/.
 cp build/install/bin/sls_detector_put $PREFIX/bin/.
 cp build/install/bin/sls_detector_help $PREFIX/bin/.

conda-recipe/meta.yaml

@@ -1,10 +1,10 @@
-
 package:
   name: sls_detector_software
   version: {{ environ.get('GIT_DESCRIBE_TAG', '') }}
 
+
 source:
-  - path: ..
+  path: ..
 
 build:
   number: 0
@@ -15,40 +15,20 @@ build:
 requirements:
   build:
     - {{ compiler('c') }}
+    - {{stdlib('c')}}
     - {{compiler('cxx')}}
-    - cmake
+    - cmake<=3.28
+    - ninja
     - qt 5.*
-    - zeromq
-    - xorg-libx11
-    - xorg-libice
-    - xorg-libxext
-    - xorg-libsm
-    - xorg-libxau
-    - xorg-libxrender
-    - xorg-libxfixes
-    - {{ cdt('mesa-libgl-devel') }}      # [linux]
-    - {{ cdt('mesa-libegl-devel') }}     # [linux]
-    - {{ cdt('mesa-dri-drivers') }}      # [linux]
-    - {{ cdt('libselinux') }}            # [linux]
-    - {{ cdt('libxdamage') }}            # [linux]
-    - {{ cdt('libxxf86vm') }}            # [linux]
-    - expat
 
   host:
     - libstdcxx-ng
     - libgcc-ng
-    - zeromq
-    - xorg-libx11
-    - xorg-libice
-    - xorg-libxext
-    - xorg-libsm
-    - xorg-libxau
-    - xorg-libxrender
-    - xorg-libxfixes
-    - expat
+    - libgl-devel
+    - libtiff
+    - zlib
   
   run:
-    - zeromq
     - libstdcxx-ng
     - libgcc-ng 
 
@@ -63,18 +43,12 @@ outputs:
         - {{compiler('cxx')}}
         - libstdcxx-ng
         - libgcc-ng
-        - zeromq
-
-      host:
-        - zeromq
 
       run: 
         - libstdcxx-ng
         - libgcc-ng
-        - zeromq
 
   - name: slsdet
-
     script: build_pylib.sh
 
     requirements:
@@ -84,10 +58,13 @@ outputs:
         - {{compiler('cxx')}}
         - {{ pin_subpackage('slsdetlib', exact=True) }}
         - setuptools
+        - pybind11=2.13
 
       host:
         - python
         - {{ pin_subpackage('slsdetlib', exact=True) }}
+        - setuptools
+        - pybind11=2.13
 
 
       run:
@@ -97,11 +74,11 @@ outputs:
         - numpy
         - {{ pin_subpackage('slsdetlib', exact=True) }}
 
-
     test:
       imports:
         - slsdet
 
+
   - name: slsdetgui
     script: copy_gui.sh
     requirements:
@@ -129,3 +106,4 @@ outputs:
       run:
         - {{ pin_subpackage('slsdetlib', exact=True) }}
         - expat
+

ctbGui/CMakeLists.txt

@@ -1,90 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-find_package(ROOT CONFIG REQUIRED  COMPONENTS Core Gui)
-find_package(TIFF REQUIRED)
-
-target_include_directories(ROOT::Core INTERFACE "${ROOT_INCLUDE_DIRS}")
-add_library(ROOT::Flags_CXX IMPORTED INTERFACE)
-separate_arguments(ROOT_CXX_FLAGS)
-target_compile_options(ROOT::Flags_CXX INTERFACE ${ROOT_CXX_FLAGS})
-separate_arguments(ROOT_DEFINITIONS)
-target_compile_definitions(ROOT::Flags_CXX INTERFACE ${ROOT_DEFINITIONS})
-
-# This fixes a bug in the linker flags
-string(REPLACE "-L " "-L" ROOT_EXE_LINKER_FLAGS "${ROOT_EXE_LINKER_FLAGS}")
-separate_arguments(ROOT_EXE_LINKER_FLAGS)
-
-# Stuck into using old property method due to separate -L and -l arguments
-# (A full path to -l is better!)
-set_property(TARGET ROOT::Flags_CXX PROPERTY
-    INTERFACE_LINK_LIBRARIES ${ROOT_EXE_LINKER_FLAGS})
-set_property(TARGET ROOT::Core PROPERTY
-    INTERFACE_INCLUDE_DIRECTORIES "${ROOT_INCLUDE_DIRS}")
-
-
-add_executable(ctbGui 
-    ctbGui.cpp 
-    ctbMain.cpp
-    ctbDacs.cpp
-    ctbPowers.cpp
-    ctbSlowAdcs.cpp
-    ctbSignals.cpp
-    ctbAdcs.cpp
-    ctbPattern.cpp
-    ctbAcquisition.cpp
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/tiffio/src/tiffIO.cpp
-)
-
-
-#TODO! Replace with target
-target_include_directories(ctbGui PRIVATE 
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/dataStructures
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/interpolations
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/tiffio/include/
-)
-
-# Headders needed for ROOT dictionary generation
-set( HEADERS
-    ctbDefs.h
-    ctbMain.h 
-    ctbDacs.h   
-    ctbPattern.h  
-    ctbSignals.h  
-    ctbAdcs.h 
-    ctbAcquisition.h 
-    ctbPowers.h   
-    ctbSlowAdcs.h
-)
-
-#set(ROOT_INCLUDE_PATH ${CMAKE_CURRENT_SOURCE_DIR})
-
-# ROOT dictionary generation 
-root_generate_dictionary(ctbDict ${HEADERS} LINKDEF ctbLinkDef.h)
-add_library(ctbRootLib SHARED ctbDict.cxx)
-target_include_directories(ctbRootLib PUBLIC ${CMAKE_CURRENT_SOURCE_DIR})
-target_link_libraries(ctbRootLib PUBLIC 
-    ROOT::Core 
-    slsDetectorShared
-    ${ROOT_LIBRARIES} 
-    ${ROOT_EXE_LINKER_FLAGS}
-)
-
-set_target_properties(
-    ctbRootLib PROPERTIES
-    LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-)
-
-target_link_libraries(ctbGui PUBLIC 
-    slsDetectorShared
-    ctbRootLib
-    ${TIFF_LIBRARIES}
-)
-
-set_target_properties(ctbGui PROPERTIES
-    RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-
-)
-

ctbGui/Makefile.root5

@@ -1,46 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-INCS=ctbMain.h ctbDacs.h   ctbPattern.h  ctbSignals.h  ctbAdcs.h ctbAcquisition.h ctbPowers.h   ctbSlowAdcs.h 
-SRC= $(INCS:.h=.cpp) ctbDict.cpp 
-LINKDEF=ctbLinkDef.h 
-ZMQLIB=../slsReceiverSoftware/include
-LIBRARYCBF=$(CBFLIBDIR)/lib/*.o
-
-INCDIR=-I../slsReceiverSoftware/include/ -I../slsDetectorSoftware/include/ -I../slsSupportLib/include/  -I../slsDetectorCalibration -I../slsDetectorCalibration/dataStructures  -I$(CBFLIBDIR)/include  -I../slsDetectorCalibration/interpolations
-LDFLAG=-L../build/bin -lSlsDetector -lSlsSupport  -L/usr/lib64/ -lpthread -lm  -lstdc++  -lzmq -pthread -lrt  -ltiff -L$(ZMQLIB) -L$(CBFLIBDIR)/lib/ -std=c++11
-#
-MAIN=ctbGui.cpp
-
-DESTDIR?=../build/bin
-
-
-OBJS = $(SRC:.cpp=.o) $(MAIN:.cpp=.o)
-
-all: $(DESTDIR)/ctbGui
-
-
-doc:
-	cd manual && make DESTDIR=$(DESTDIR)
-
-htmldoc:
-	cd manual && make html DESTDIR=$(DESTDIR)
-
-ctbDict.cpp: $(INCS)  $(LINKDEF)
-	rootcint -f ctbDict.cpp -c $(INCS) $(LINKDEF)	
-
-%.o : %.cpp 
-	echo $@
-	g++ -DMYROOT `root-config --cflags --glibs` -lMinuit -DCTB $(LDFLAG)  -o $@ -c $< $(INCDIR)
-#$(CXX) -o $@ -c $< $(INCLUDES) $(DFLAGS) -fPIC  $(EPICSFLAGS) -lpthread #$(FLAGS)
-
-
-
-$(DESTDIR)/ctbGui: $(OBJS) $(LINKDEF) 
-	g++ -DMYROOT `root-config --cflags --glibs` -lMinuit -DCTB $(LDFLAG) -o ctbGui $(INCDIR) $(OBJS)  ../slsDetectorCalibration/tiffIO.cpp
-	mv ctbGui $(DESTDIR)	
-
-clean:
-	rm -f $(DESTDIR)/ctbGui *.o ctbDict.* $(OBJS)
-

ctbGui/Makefile.root6

@@ -1,48 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-INCS=ctbMain.h ctbDacs.h   ctbPattern.h  ctbSignals.h  ctbAdcs.h ctbAcquisition.h ctbPowers.h   ctbSlowAdcs.h  
-SRC= $(INCS:.h=.cpp) ctbDict.cpp 
-LINKDEF=ctbLinkDef.h 
-#ctbActions.h 
-ZMQLIB=../slsReceiverSoftware/include
-LIBRARYCBF=$(CBFLIBDIR)/lib/*.o
-
-INCDIR=-I../slsReceiverSoftware/include/ -I../slsDetectorSoftware/include/ -I../slsSupportLib/include/  -I../slsDetectorCalibration -I../slsDetectorCalibration/dataStructures  -I$(CBFLIBDIR)/include  -I../slsDetectorCalibration/interpolations
-
-LDFLAG=-L../build/bin -lSlsDetector -lSlsSupport  -L/usr/lib64/ -lpthread -lm  -lstdc++  -lzmq -pthread -lrt  -ltiff -L$(ZMQLIB) -L$(CBFLIBDIR)/lib/ -std=c++11
-#
-MAIN=ctbGui.cpp
-
-DESTDIR?=../build/bin
-
-
-OBJS = $(SRC:.cpp=.o) $(MAIN:.cpp=.o)
-
-all: $(DESTDIR)/ctbGui
-
-
-doc:
-	cd manual && make DESTDIR=$(DESTDIR)
-
-htmldoc:
-	cd manual && make html DESTDIR=$(DESTDIR)
-
-ctbDict.cpp: $(INCS)  $(LINKDEF)
-	rootcling -f ctbDict.cpp -c $(INCS) $(LINKDEF)	
-
-%.o : %.cpp 
-	echo $@
-	g++ -DMYROOT `source root-config --cflags --glibs` -lMinuit -DCTB $(LDFLAG)  -o $@ -c $< $(INCDIR)
-#$(CXX) -o $@ -c $< $(INCLUDES) $(DFLAGS) -fPIC  $(EPICSFLAGS) -lpthread #$(FLAGS)
-
-
-
-$(DESTDIR)/ctbGui: $(OBJS) $(LINKDEF) 
-	g++ -DMYROOT `source root-config --cflags --glibs` -lMinuit -DCTB $(LDFLAG) -o ctbGui $(INCDIR) $(OBJS)  ../slsDetectorCalibration/tiffIO.cpp
-	mv ctbGui $(DESTDIR)	
-
-clean:
-	rm -f $(DESTDIR)/ctbGui *.o ctbDict.* $(OBJS)
-

ctbGui/ctbAcquisition.h

@@ -1,248 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef CTBACQUISITION_H
-#define CTBACQUISITION_H
-#include  <TGFrame.h>
-
-#include "ctbAdcs.h"
-#include "ctbSignals.h"
-#include "ctbPattern.h"
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TGCheckButton;
-class TThread;
-class TGraph;
-class TMultiGraph;
-class THStack;
-class TGButtonGroup;
-class TGRadioButton;
-class TGComboBox;
-class TTimer;
-class TCanvas;
-class TH2F;
-class TH1F;
-class TGLabel;
-class TGTextButton;
-
-namespace sls
-{
-   class Detector;
-   class detectorData;
-};
-
-template <class dataType> class slsDetectorData;
-
-class singlePhotonDetector;
-//class singlePhotonDetector;
-class commonModeSubtraction;
-
-#include <string>
-#include <stdint.h>
-using namespace std;
-
-class ctbAcquisition : public TGGroupFrame {
-
-
-  enum {DESERIALIZER, MOENCH04, MOENCH02, MOENCH03, IMAGE32B, IMAGE16B, ADCSAR2, MYTHEN301, MYTHEN302};
-
-
- private:
-  TGTextEntry *eOutdir;
-  TGTextEntry *eFname;
-  TGNumberEntry *eFindex;
-  TGCheckButton *cFileSave;
-
-
-  TGNumberEntry *eSerOff;
-  TGNumberEntry *eDynRange;
-  TGNumberEntry *eNumCount;
-
-
-  TGNumberEntry *ePixX;
-  TGNumberEntry *ePixY;
-
-  TGNumberEntry *eFitADC;
-  TGNumberEntry *eBitPlot;
-  TGNumberEntry *eMinRaw;
-  TGNumberEntry *eMaxRaw;
-  TGNumberEntry *eMinPedSub;
-  TGNumberEntry *eMaxPedSub;
-  TGCheckButton *cMinMaxRaw;
-  TGCheckButton *cMinMaxPedSub;
-
-
-
-
-  TGNumberEntry *eMeasurements;
-
-
-
-  TGTextButton *bStatus;
-  // TGTextButton 
-  TGCheckButton *cCompile;
-  TGTextButton *cLoad;
-  //  TGCheckButton *cRun;
-  
-  TThread *acqThread;
-
-
-  THStack *adcStack;
-  THStack *bitStack;
-  THStack *countsStack;
-
-
-  TH1F *adcHisto[NADCS];
-  TH1F *countsHisto[NADCS];
- 
-  TH1F *bitHisto[NSIGNALS];
-  float bitOffset[NSIGNALS];
-  
-  // int enableFlag[NADCS+4];
-  int roMode;
-
-  int dBitOffset;
-
-
-
-  TH1F *adcFit;
-  TH1F *bitPlot;
-  TH1F *countsFit;
-
-
-
-  TH2F *h2DMapAn; // for 2D detectors
-  TH2F *h2DMapDig; // for 2D detectors
-  TH1F *h1DMap; //for 1D detectors
-
-  //  TH2F *h2Scan; // for 2D detectors
-  // TMultiGraph *mgAdcs;
-  // TH1I *plotAdc[NADCS];
-
-
-  sls::Detector* myDet;
-  
-  int plotFlag[NADCS];
-  int bitPlotFlag[NSIGNALS];
-  
-  int ip;
-  // int nChannels;
-  // int chanEnable;
-  //int nADCs;
-
-  std::vector <int> dbitlist;
-  std::vector <int> adclist;
-
-  TGButtonGroup *bgPlot;// = new TGVButtonGroup(main_frame);
-  TGRadioButton *rbPlotOff;
-  TGRadioButton *rbWaveform;
-  TGRadioButton *rbDistribution;
-  TGRadioButton *rb2D;
-  //  TGRadioButton *rbScan;
-  TGComboBox *cbDetType;
-  TGCheckButton *cbGetPedestal;
-  TGCheckButton *cbSubtractPedestal;
-  TGCheckButton *cbCommonMode;
-  TGTextButton *bResetPedestal;
-
-  TGLabel *lClickX;
-  TGLabel *lClickY;
-  TGLabel *lClickValue;
-
-
-  TCanvas *myCanvas;
-  TTimer *plotTimer;
-
-  char patternFile[10000];
-  char patternCompiler[10000];
-  
-  int globalPlot;
-  int adcPlot;
-  int dbitPlot;
-  int tenG;
-
-  int nAnalogSamples, nDigitalSamples;
-  // int iScanStep;
-
-  slsDetectorData<uint16_t> *dataStructure;
-  singlePhotonDetector *photonFinder;
-    //singlePhotonDetector *photonFinder;
-  commonModeSubtraction *commonMode;
-  int cmSub;
-
-  int stop;
-
-  uint64_t dBitMask;
-
-  int deserializer;
-
- public:
-   ctbAcquisition(TGVerticalFrame*,  sls::Detector*);
-   void setOutdir();
-   void setFname();
-   void setMeasurements();
-   void setFsave(Bool_t);
-   void changePlot(Int_t);
-   void changeDetector(Int_t);
-   void changePlot();
-   void changeDetector();
-   void setFindex();
-   void Draw();
-   void setCanvas(TCanvas*);
-
-   void toggleAcquisition();
-   void loadPattern();
-   static void* ThreadHandle(void *arg);
-   void update();
-   void acquisitionFinished();
-   //  string getParameters();
-
-   void setGraph (int i ,int en, Pixel_t col);
-   void setBitGraph (int i ,int en, Pixel_t col);
-   void startAcquisition();
-   static   void progressCallback(double,void*);
-   static void dataCallback(sls::detectorData*, long unsigned int, unsigned int,  void*);
-   int StopFlag;
-   
-   int plotData(sls::detectorData*, int);
-
-   void setPatternFile(const char* t);
-
-   void setPatternCompiler(const char* t);
-
-   void setAnalogSamples(int);
-   void setDigitalSamples(int);
-   
-   void setADCEnable(Int_t);
-   void setDbitEnable(Int_t);
-   void setReadoutMode(int);
-   void updateChans();
-
-   void resetPedestal();
-
-   void ToggleCommonMode(Bool_t);
-   void TogglePedSub(Bool_t);
-   void ChangeHistoLimitsPedSub(Long_t );
-   void ChangeHistoLimitsRaw(Long_t);
-   void ChangeHistoLimitsPedSub( );
-   void ChangeHistoLimitsRaw();
-   void ChangeHistoLimitsPedSub(Bool_t );
-   void ChangeHistoLimitsRaw(Bool_t);
-   
-
-   void ChangeSerialOffset();
-   void ChangeSerialOffset(Long_t);
-   void ChangeNumberOfChannels();
-   void ChangeNumberOfChannels(Long_t);
-   void ChangeDynamicRange();
-   void ChangeDynamicRange(Long_t);
-   void ChangeImagePixels();
-   void ChangeImagePixels(Long_t);
-
-   void canvasClicked();
-   void FitADC();
-   void plotBit();
-   ClassDef(ctbAcquisition,0)
-};
-
-#endif

ctbGui/ctbAdcs.cpp

@@ -1,616 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#include <TApplication.h>
-#include <TGClient.h>
-#include <TCanvas.h>
-#include <TF1.h>
-#include <TRandom.h>
-#include <TGButton.h>
-#include <TRootEmbeddedCanvas.h>
-#include <TGButtonGroup.h>
-#include <TGNumberEntry.h>
-#include <TGLabel.h>
-#include <TList.h>
-#include <TGFileDialog.h>
-#include <TGComboBox.h>
-#include <TH2F.h>
-#include <TColor.h>
-#include <TH1F.h>
-#include <TGraphErrors.h>
-#include <TGColorSelect.h>
-#include <THStack.h>
-#include <TGTab.h>
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-
-#include "ctbAdcs.h"
-#include "ctbDefs.h"
-#include "sls/Detector.h"
-
-using namespace std;
-
-
-
-ctbAdc::ctbAdc(TGVerticalFrame *page, int i, sls::Detector *det)
-  : TGHorizontalFrame(page, 800,800), id(i), myDet(det) {
-
-  TGHorizontalFrame *hframe=this;
-  char tit[100];
-
-   page->AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-   hframe->MapWindow();
-
-
-   
-
-
-   sprintf(tit, "ADC%d", id);
-
-   sAdcLabel= new TGLabel(hframe, tit);
-   hframe->AddFrame(sAdcLabel,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sAdcLabel->MapWindow();
-   sAdcLabel->SetTextJustify(kTextLeft);
-
-
-
-   
-   
-
-   sAdcInvert= new TGCheckButton(hframe, "Inv");
-   hframe->AddFrame( sAdcInvert,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sAdcInvert->MapWindow();
-   sAdcInvert->Connect("Toggled(Bool_t)","ctbAdc",this,"ToggledInvert(Bool_t)");
-
-
-   sAdcEnable= new TGCheckButton(hframe, "En");
-   hframe->AddFrame( sAdcEnable,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sAdcEnable->MapWindow();
-   // sAdcEnable->SetOn(kTRUE);
-   // sAdcEnable->SetEnabled(kFALSE);
-   sAdcEnable->Connect("Toggled(Bool_t)","ctbAdc",this,"ToggledEnable(Bool_t)");
-
-
-
-   sAdcPlot= new TGCheckButton(hframe, "Plot");
-   hframe->AddFrame( sAdcPlot,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sAdcPlot->MapWindow();
-
-
-   sAdcPlot->Connect("Toggled(Bool_t)","ctbAdc",this,"ToggledPlot(Bool_t)");
-
-
-
-   fColorSel = new TGColorSelect(hframe, id+1, 0);
-
-   fColorSel->Connect("ColorSelected(Pixel_t)","ctbAdc",this,"ColorChanged(Pixel_t)");
-   hframe->AddFrame(fColorSel, new TGLayoutHints(kLHintsTop |
-                          kLHintsLeft, 2, 0, 2, 2));
-   
-
-   fColorSel->SetColor(TColor::Number2Pixel(id+1));
-   //   sprintf(tit,"adc%d",id);
-//    gADC=new TGraph();
-//    gADC->SetName(tit);
-//    gADC->SetLineColor(id+1);
-//    gADC->SetMarkerColor(id+1);
-   
-   
-
-};
-Pixel_t ctbAdc::getColor(){
-  return fColorSel->GetColor();
-}
-Bool_t ctbAdc::getEnabled(){
-  return getPlot();
-}
-Bool_t ctbAdc::getPlot(){
-  return sAdcPlot->IsOn();
-}
-Bool_t ctbAdc::getInverted(){
-  return sAdcInvert->IsOn();
-}
-
-Bool_t ctbAdc::getEnable(){
-  return sAdcEnable->IsOn();
-}
-
-
-
-void ctbAdc::setInverted(Bool_t b){
-  //  cout << id << "set enabled " << b << endl;
-  if (b)
-    sAdcInvert->SetOn(kTRUE,kTRUE);
-  else
-    sAdcInvert->SetOn(kFALSE,kTRUE);
-    
-}
-
-
-void ctbAdc::setEnable(Bool_t b){
-  //  cout << id << "set enabled " << b << endl;
-  if (b)
-    sAdcEnable->SetOn(kTRUE,kFALSE);
-  else
-    sAdcEnable->SetOn(kFALSE,kFALSE);
-    
-}
-
-
-
-
-
-void ctbAdc::setAdcAlias(char *tit, int plot, int color) {
-  if (tit)
-    sAdcLabel->SetText(tit);
-  if (plot>0)
-    sAdcPlot->SetOn(kTRUE,kTRUE);
-  else if (plot==0)
-    sAdcPlot->SetOn(kFALSE,kTRUE);
-  if (color>=0)
-    fColorSel->SetColor(color);
-  fColorSel->SetEnabled(sAdcPlot->IsOn());
-}
-
-
-string ctbAdc::getAdcAlias() {
-
-  char line[1000];
-  sprintf(line,"ADC%d %s %d %lx\n",id,sAdcLabel->GetText()->Data(),sAdcPlot->IsOn(),fColorSel->GetColor());
-  return string(line);
-}
-
-void ctbAdc::update() {
-
-  
-  //Emit("ToggledAdcEnable(Int_t)", id);
-  
-}
-
-
-void ctbAdc::ToggledPlot(Bool_t b){
-
-  //  Long_t mask=b<<id;
-  //  ToggledAdcPlot(mask);
-  cout << "Colsel " << id << " enable " << b << endl;
-  if (b)
-    fColorSel->SetEnabled(kTRUE);
-  else
-    fColorSel->SetEnabled(kFALSE);
-    
-  // fColorSel->SetEnabled(sAdcPlot->IsOn());
-  Emit("ToggledAdcPlot(Int_t)", id);
-  
-}
-
-
-
-void ctbAdc::ToggledInvert(Bool_t b){
-
-    
-  // fColorSel->SetEnabled(sAdcPlot->IsOn());
-  Emit("ToggledAdcInvert(Int_t)", id);
-  
-}
-
-
-
-void ctbAdc::ToggledEnable(Bool_t b){
-
-    
-  fColorSel->SetEnabled(sAdcPlot->IsOn());
-  Emit("ToggledAdcEnable(Int_t)", id);
-  
-}
-
-
-
-
-
-
-void ctbAdc::ColorChanged(Pixel_t) {
-  
-  Emit("ToggledAdcPlot(Int_t)", id);
-
-}
-
-void ctbAdc::ToggledAdcPlot(Int_t b){
-
-  
-  Emit("ToggledAdcPlot(Int_t)", id);
-
-}
-
-void ctbAdc::ToggledAdcInvert(Int_t b){
-
-  
-  Emit("ToggledAdcInvert(Int_t)", id);
-
-}
-
-void ctbAdc::ToggledAdcEnable(Int_t b){
-
-  
-  Emit("ToggledAdcEnable(Int_t)", id);
-
-}
-
-
-
-
-void ctbAdc::setEnabled(Bool_t b){
-  //  cout << id << "set enabled " << b << endl;
-  if (b)
-    sAdcPlot->SetOn(kTRUE,kFALSE);
-  else
-    sAdcPlot->SetOn(kFALSE,kFALSE);
-    
-}
-
-
-
-void ctbAdc::setPlot(Bool_t b){
-  //  cout << id << "set enabled " << b << endl;
-  if (b)
-    sAdcPlot->SetOn(kTRUE,kTRUE);
-  else
-    sAdcPlot->SetOn(kFALSE,kTRUE);
-    
-  
-}
-
-
-
-
-
-
-
-ctbAdcs::ctbAdcs(TGVerticalFrame *page, sls::Detector *det)
-  : TGGroupFrame(page,"Adcs",kVerticalFrame), myDet(det) {
-
-
-  SetTitlePos(TGGroupFrame::kLeft);
-  page->AddFrame(this,new TGLayoutHints( kLHintsTop | kLHintsExpandX , 10,10,10,10));
-  MapWindow();
-  
-
- 
-  TGHorizontalFrame* hframe=new TGHorizontalFrame(this, 800,800);
-  AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
-
-
-  int idac=0;
-
-
-
-
- 
-  TGHorizontalFrame* hhframe=new TGHorizontalFrame(this, 800,800);
-  AddFrame(hhframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hhframe->MapWindow();
-
-  TGVerticalFrame *vframe;
-
-
-
-
-  for (idac=0; idac<NADCS; idac++) {
-    if (idac%16==0) {
-
-
-    vframe=new TGVerticalFrame(hhframe, 400,800);
-     hhframe->AddFrame(vframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    vframe->MapWindow();
-   
-  
-
-    }
-
-    sAdc[idac]=new ctbAdc(vframe,idac,myDet);
-
-    
-    sAdc[idac]->Connect("ToggledAdcPlot(Int_t)","ctbAdcs",this,"ToggledAdcPlot(Int_t)");
-    sAdc[idac]->Connect("ToggledAdcInvert(Int_t)","ctbAdcs",this,"ToggledAdcInvert(Int_t)");
-    sAdc[idac]->Connect("ToggledAdcEnable(Int_t)","ctbAdcs",this,"ToggledAdcEnable(Int_t)");
-
-  }
-
-  hframe=new TGHorizontalFrame(this, 800,800);
-  AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
-    bCheckHalf[0]=new TGTextButton(hframe, "All 0-15");
-    hframe->AddFrame(bCheckHalf[0],new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 5, 5, 5, 5));
-    bCheckHalf[0]->MapWindow();
-    bCheckHalf[0]->Connect("Clicked()","ctbAdcs",this,"CheckHalf0()");
-
-
-    bRemoveHalf[0]=new TGTextButton(hframe, "None 0-15");
-    hframe->AddFrame(bRemoveHalf[0],new TGLayoutHints(kLHintsBottom |  kLHintsExpandX, 5, 5, 5, 5));
-    bRemoveHalf[0]->MapWindow();
-    bRemoveHalf[0]->Connect("Clicked()","ctbAdcs",this,"RemoveHalf0()");
-
-
-    bCheckHalf[1]=new TGTextButton(hframe, "All 16-23");
-    hframe->AddFrame(bCheckHalf[1],new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 5, 5, 5, 5));
-    bCheckHalf[1]->MapWindow();
-    bCheckHalf[1]->Connect("Clicked()","ctbAdcs",this,"CheckHalf1()");
-    //  bCheckAll->Connect("Clicked()","ctbAdcs",this,"CheckAll()");
-
-
-    bRemoveHalf[1]=new TGTextButton(hframe, "None 16-23");
-    hframe->AddFrame(bRemoveHalf[1],new TGLayoutHints(kLHintsBottom |  kLHintsExpandX, 5, 5, 5, 5));
-    bRemoveHalf[1]->MapWindow();
-    bRemoveHalf[1]->Connect("Clicked()","ctbAdcs",this,"RemoveHalf1()");
-    // bRemoveAll->Connect("Clicked()","ctbAdcs",this,"RemoveAll()");
-
-
-
-
-  hframe=new TGHorizontalFrame(this, 800,800);
-  AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
-    bCheckAll=new TGTextButton(hframe, "All");
-    hframe->AddFrame(bCheckAll,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 5, 5, 5, 5));
-    bCheckAll->MapWindow();
-    bCheckAll->Connect("Clicked()","ctbAdcs",this,"CheckAll()");
-
-
-    bRemoveAll=new TGTextButton(hframe, "None");
-    hframe->AddFrame(bRemoveAll,new TGLayoutHints(kLHintsBottom |  kLHintsExpandX, 5, 5, 5, 5));
-    bRemoveAll->MapWindow();
-    bRemoveAll->Connect("Clicked()","ctbAdcs",this,"RemoveAll()");
-
-
-
-  hframe=new TGHorizontalFrame(this, 800,50);
- AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
-  TGLabel *label= new TGLabel(hframe, "Inversion mask: ");
-   hframe->AddFrame(label,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   label->MapWindow();
-   label->SetTextJustify(kTextLeft);
-
-
-   eInversionMask = new TGNumberEntry(hframe, 0, 16,999, TGNumberFormat::kNESHex,
-                                               TGNumberFormat::kNEANonNegative, 
-                                               TGNumberFormat::kNELNoLimits);
-
-  hframe->AddFrame(eInversionMask,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 1, 1, 1, 1));
-   eInversionMask->MapWindow();
-   eInversionMask->Resize(150,30);
-   eInversionMask->SetState(kFALSE);
-
-
-  hframe=new TGHorizontalFrame(this, 800,50);
- AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
- label= new TGLabel(hframe, "Enable mask: ");
-   hframe->AddFrame(label,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   label->MapWindow();
-   label->SetTextJustify(kTextLeft);
-
-
-   eEnableMask = new TGNumberEntry(hframe, 0, 16,999, TGNumberFormat::kNESHex,
-                                               TGNumberFormat::kNEANonNegative, 
-                                               TGNumberFormat::kNELNoLimits);
-
-   hframe->AddFrame(eEnableMask,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 1, 1, 1, 1));
-   eEnableMask->MapWindow();
-   eEnableMask->Resize(150,30);
-   eEnableMask->SetState(kFALSE);
-
-}
-
-
-int ctbAdcs::setEnable(int reg) {
-
-  try {
-    if (reg > -1) {
-      myDet->setADCEnableMask(reg);
-    }
-    auto retval = myDet->getADCEnableMask().tsquash("Different values");
-    eEnableMask->SetHexNumber(retval);
-    return retval;
-  } CATCH_DISPLAY ("Could not set/get adc enablemask.", "ctbAdcs::setEnable")
-  
-  return -1;
-}
-
-int ctbAdcs::setInvert(int reg) {
-
-  try {
-    if (reg > -1) {
-      myDet->setADCInvert(reg);
-    }
-    auto retval = myDet->getADCInvert().tsquash("Different values");
-    eInversionMask->SetHexNumber(retval);
-    return retval;
-  } CATCH_DISPLAY ("Could not set/get adc enablemask.", "ctbAdcs::setEnable")
-  
-  return -1;
-}
-
-
-
-void ctbAdcs::update() {
-  Int_t invreg;
-  Int_t disreg;
-
-  disreg=setEnable();
-  invreg=setInvert();
-  
-  for (int is=0; is<NADCS; is++) {
-    sAdc[is]->setAdcAlias(NULL,-1,-1);
-    if (invreg & (1<<is) )
-      sAdc[is]->setInverted(kTRUE);
-    else
-      sAdc[is]->setInverted(kFALSE);
-
-    if (disreg & (1<<is) )
-      sAdc[is]->setEnable(kTRUE);
-    else
-      sAdc[is]->setEnable(kFALSE);
-  }
-  
-   Emit("AdcEnable(Int_t)", disreg);
-
-}
-string ctbAdcs::getAdcParameters() {
-    ostringstream line;
-  line << "reg "<< hex  << setInvert() << "# ADC invert reg" << dec << endl;
-  line << "reg "<< hex  << setEnable() << " # ADC enable reg"<< dec <<  endl;
-  return line.str();
-
-}
-
-
-void ctbAdcs::CheckAll() {
-  for (int is=0; is<NADCS; is++){
-    sAdc[is]->setPlot(kTRUE);
-  }
-}
-
-
-void ctbAdcs::RemoveAll() {
-  for (int is=0; is<NADCS; is++) {
-    sAdc[is]->setPlot(kFALSE);
-  }
-}
-
-
-
-void ctbAdcs::CheckHalf0() {
-  for (int is=0; is<NADCS/2; is++) {
-    sAdc[is]->setPlot(kTRUE);
-  }
-}
-
-
-void ctbAdcs::RemoveHalf0() {
-  for (int is=0; is<NADCS/2; is++){
-    sAdc[is]->setPlot(kFALSE);
-  }
-}
-
-void ctbAdcs::CheckHalf1() {
-  for (int is=NADCS/2; is<NADCS; is++){
-    sAdc[is]->setPlot(kTRUE);
-  }
-}
-
-
-void ctbAdcs::RemoveHalf1() {
-  for (int is=NADCS/2; is<NADCS; is++){
-    sAdc[is]->setPlot(kFALSE);
-  }
-}
-
-
-int ctbAdcs::setAdcAlias(string line) {
-
-  int is=-1, plot=0, color=-1;
-  char tit[100];
-  int narg=sscanf(line.c_str(),"ADC%d %s %d %x",&is,tit,&plot, &color);
-  if (narg<2)
-    return -1;
-  if (narg!=3)
-    color=-1;
-  if (is>=0 && is<NADCS) {
-    sAdc[is]->setAdcAlias(tit,plot,color);
-  }
-  return is;
-
-}
-
-string ctbAdcs::getAdcAlias() {
-
-  ostringstream line;
-
-  for (int is=0; is<NADCS; is++)
-    line << sAdc[is]->getAdcAlias();
-
-  return line.str();
-}
-
-
-void ctbAdcs::ToggledAdcPlot(Int_t b){
-
-  
-  Emit("ToggledAdcPlot(Int_t)", b);
-
-}
-
-void ctbAdcs::AdcEnable(Int_t b){
-   Emit("AdcEnable(Int_t)", b);
-}
-
-
-void ctbAdcs::ToggledAdcEnable(Int_t b){
-
-   Int_t oreg=setEnable();
-   Int_t m=1<<b;
-  
-   if (sAdc[b]->getEnable())
-     oreg|=m;
-   else
-     oreg&=~m;
-
-   setEnable(oreg);
-  
-   Emit("AdcEnable(Int_t)", oreg);
-}
-
-
-void ctbAdcs::ToggledAdcInvert(Int_t b){
-
-   Int_t oreg=setInvert();
-   Int_t m=1<<b;
-  
-
-   if (sAdc[b]->getInverted())
-     oreg|=m;
-   else
-     oreg&=~m;
-  
-   setInvert(oreg);
-}
-
-
-
-
-
-Pixel_t ctbAdcs::getColor(int i){
-  if (i>=0 && i<NADCS)
-    return sAdc[i]->getColor();
-  return static_cast<Pixel_t>(-1);
-}
-
-Bool_t ctbAdcs::getEnabled(int i){
-  if (i>=0 && i<NADCS)
-    return sAdc[i]->getEnabled();
-  return static_cast<Bool_t>(-1);
-}
-
-Bool_t ctbAdcs::getEnable(int i){
-  if (i>=0 && i<NADCS)
-    return sAdc[i]->getEnable();
-  return static_cast<Bool_t>(-1);
-}
-
-Bool_t ctbAdcs::getPlot(int i){
-  if (i>=0 && i<NADCS)
-    return sAdc[i]->getPlot();
-  return static_cast<Bool_t>(-1);
-}

ctbGui/ctbAdcs.h

@@ -1,157 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-
-#ifndef CTBADCS_H
-#define CTBADCS_H
-#include  <TGFrame.h>
-
-
-#define NADCS 32
-
-class TRootEmbeddedCanvas;
-class TGButtonGroup;
-class TGVerticalFrame;
-class TGHorizontalFrame;
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TH2F;
-class TGComboBox;
-class TGCheckButton;
-class TGColorSelect;
-class TColor;
-
-class   THStack;
-class   TGraphErrors;
-class  TGTextButton;
-class  TGTab;
-
-class TGraph;
-
-namespace sls
-{
-   class Detector;
-};
-
-#include <string>
-using namespace std;
-
-class ctbAdc : public TGHorizontalFrame {
-
-
- private:
-  
-
-   TGLabel *sAdcLabel;
-   TGCheckButton *sAdcEnable;
-   TGCheckButton *sAdcPlot;
-   TGCheckButton *sAdcInvert;
-
-   TGColorSelect  *fColorSel;
-
-   //  TGraph *gADC;
-
-   int id;
-   sls::Detector *myDet;
-   
- public:
-   ctbAdc(TGVerticalFrame *page, int i, sls::Detector *det);
-
-
-   void setAdcAlias(char *tit, int plot, int color);
-   string getAdcAlias();
-   void ToggledAdcPlot(Int_t b);
-   void ToggledAdcEnable(Int_t b);
-   void ToggledAdcInvert(Int_t b);
-
-
-   void ToggledPlot(Bool_t b);
-   void ToggledEnable(Bool_t b);
-   void ToggledInvert(Bool_t b);
-   void ColorChanged(Pixel_t);
-   void setEnabled(Bool_t b);
-   Bool_t getEnabled();
-   // TGraph *getGraph();
-   void update();
-
-   Pixel_t getColor();
-   
-   Bool_t getEnable();
-   void setEnable(Bool_t);
-   void setPlot(Bool_t);
-   Bool_t getInverted();
-   Bool_t getPlot();
-   void setInverted(Bool_t);
-
-   ClassDef(ctbAdc,0)
-     };
-
-
-
-class ctbAdcs : public TGGroupFrame {
-private:
-  
-  ctbAdc *sAdc[NADCS];
-   sls::Detector *myDet;
-
-   
-  TGTextButton *bCheckAll;
-  TGTextButton *bRemoveAll;
-  TGTextButton *bCheckHalf[2];
-  TGTextButton *bRemoveHalf[2];
-  TGNumberEntry *eInversionMask;
-  TGNumberEntry *eEnableMask;
-
-
-/*   TGTextButton *bPlotSelected; */
-/*   TGNumberEntry *eMinX; */
-/*   TGNumberEntry *eMaxX; */
-/*   TGNumberEntry *eMinY; */
-/*   TGNumberEntry *eMaxY; */
-  
-  
-
-/*   TGTextButton *bGetPixel; */
-/*   TGNumberEntry *ePixelX; */
-/*   TGNumberEntry *ePixelY; */
-/*   TGLabel *lPixelValue; */
-
-public:
-
-   ctbAdcs(TGVerticalFrame *page, sls::Detector *det);
-   int setAdcAlias(string line);
-   string getAdcAlias();
-   string getAdcParameters();
-   void ToggledAdcPlot(Int_t);
-   void ToggledAdcInvert(Int_t);
-   void ToggledAdcEnable(Int_t);
-   void AdcEnable(Int_t b);
-   //   TGraph *getGraph(int i);
-   void CheckAll();
-   void RemoveAll();
-   void update();
-
-   int setInvert(int reg=-1);
-   int setEnable(int reg=-1);
-
-
-   Pixel_t getColor(int i);
-   Bool_t getEnabled(int i);
-   Bool_t getPlot(int i);
-   Bool_t getEnable(int i);
-
-   void CheckHalf0();
-   void RemoveHalf0();
-   
-   void CheckHalf1();
-   void RemoveHalf1();
-   
-
-   ClassDef(ctbAdcs,0)
-};
-
-#endif
-
-

ctbGui/ctbDacs.cpp

@@ -1,235 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-
-#include <TGTextEntry.h>
-#include <TGLabel.h>
-#include <TGNumberEntry.h>
-#include <TGButton.h>
-
-#include "ctbDacs.h"
-#include "ctbDefs.h"
-#include "sls/Detector.h"
-#include "sls/sls_detector_defs.h"
-
-using namespace std;
-
-
-ctbDac::ctbDac(TGGroupFrame *page, int idac, sls::Detector *det) : TGHorizontalFrame(page, 800,50) , id(idac), myDet(det) {
-
-    TGHorizontalFrame *hframe=this;
-
-    page->AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    MapWindow();
-
-    char tit[100];
-    
-
-   sprintf(tit, "DAC %d:",idac);
-
-   dacsLabel= new TGCheckButton(hframe, tit);// new TGLabel(hframe, tit);
-   dacsLabel->SetOn(kTRUE, kTRUE);
-   
-   dacsLabel->Connect("Toggled(Bool_t)","ctbDac",this,"setOn(Bool_t)");
-
-
-   hframe->AddFrame(dacsLabel,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-   dacsLabel->MapWindow();
-   dacsLabel->SetTextJustify(kTextLeft);
-
-  
-   dacsEntry = new TGNumberEntry(hframe, 0, 9,999, TGNumberFormat::kNESInteger,
-                                               TGNumberFormat::kNEANonNegative, 
-                                               TGNumberFormat::kNELLimitMinMax,
-                                               0, 65535);
-
-  hframe->AddFrame(dacsEntry,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 5, 5, 5, 5));
-   dacsEntry->MapWindow();
-   dacsEntry->Resize(150,30);
-
-
-   dacsUnit= new TGCheckButton(hframe, "mV");
-   // if (idac!=slsDetectorDefs::ADC_VPP) {
-     hframe->AddFrame( dacsUnit,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-     dacsUnit->MapWindow();
-     if (idac==slsDetectorDefs::ADC_VPP) {
-       dacsUnit->SetEnabled(kFALSE);
-       hframe->HideFrame(dacsUnit);
-       dacsUnit->MapWindow();
-       cout << "hiding!" << endl;
-     }
-     if (idac==slsDetectorDefs::HIGH_VOLTAGE) {
-       dacsUnit->SetText("V"); 
-       dacsUnit->SetOn(kTRUE,kTRUE);
-       dacsUnit->SetEnabled(kFALSE);
-     }
-     //}
-
-
-
-   sprintf(tit, "xxx");
-   dacsValue= new TGLabel(hframe, tit);
-   hframe->AddFrame( dacsValue,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-   dacsValue->MapWindow();
-   dacsValue->SetTextJustify(kTextLeft);
-
-   TGTextEntry *e=dacsEntry->TGNumberEntry::GetNumberEntry();
-   e->Connect("ReturnPressed()","ctbDac",this,"setValue()");
-   // e->Connect("ValueSet(Long_t)","ctbDac",this,"setValue(Long_t)");
-   dacsEntry->Connect("ValueSet(Long_t)","ctbDac",this,"setValue(Long_t)");
-   //  cout << "(((((((((((((((((((((((((((((((" << dacsEntry->GetListOfSignals()->At(0)->IsA() << endl;
-   
-
-}
-
-
-
-int ctbDac::setLabel(char *tit, int mv) {
-  if(tit)
-    dacsLabel->SetText(tit);
-  if (mv==1)
-    dacsUnit->SetOn(kTRUE,kTRUE);
-  else if (mv==0)
-    dacsUnit->SetOn(kFALSE,kTRUE);
-  // else if (mv==2) {
-  //   ;}
-  // else if  (mv==3)
-  //   ; 
-  return id;
-
-}
-
-string ctbDac::getLabel() {
-  ostringstream line;
-  line << dacsLabel->GetText() << " " <<  dacsUnit->IsOn() << endl;
-   //  line << "DAC" << dec << id << " " <<  dacsUnit->IsOn() << endl;
-  return line.str();
-
-}
-
-int ctbDac::getMoenchDacId() {
-  slsDetectorDefs::dacIndex moenchDacIndices[8] = {slsDetectorDefs::VBP_COLBUF, slsDetectorDefs::VIPRE, slsDetectorDefs::VIN_CM, slsDetectorDefs::VB_SDA, slsDetectorDefs::VCASC_SFP, slsDetectorDefs::VOUT_CM, slsDetectorDefs::VIPRE_CDS, slsDetectorDefs::IBIAS_SFP}; 
-
-  if (id >= 8) {
-    return id;
-  }
-  return static_cast<int>(moenchDacIndices[id]);
-}
-
-void ctbDac::setValue(Long_t a) {setValue();}
-
-void ctbDac::setValue() {
-  cout << "setting dac! "<< id << " value " << dacsEntry->GetIntNumber() << " units " << dacsUnit->IsOn() << endl;
-
-  try {
-    int sid = id;
-    if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
-      sid = getMoenchDacId();
-    }
-    myDet->setDAC(static_cast<slsDetectorDefs::dacIndex>(sid), dacsEntry->GetIntNumber(), dacsUnit->IsOn()); 
-  } CATCH_DISPLAY ("Could not set dac " + to_string(id) + ".", "ctbDac::setValue")
-
-  getValue();
-}
-
-void ctbDac::setOn(Bool_t b) {
-  //  cout << "setting dac! "<< id << endl;
-  if ( dacsLabel->IsOn()) {
-    setValue();
-  } else {
-    try {
-      int sid = id;
-      if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
-	sid = getMoenchDacId();
-      }
-      myDet->setDAC(static_cast<slsDetectorDefs::dacIndex>(sid), -100, false);
-    } CATCH_DISPLAY ("Could not power off dac " + to_string(id) + ".", "ctbDac::setOn")
-  }
-  getValue();
-}
-
-int ctbDac::getValue() { 
-  try {
-    int sid = id;
-    if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
-      sid = getMoenchDacId();
-    }
-    int val = myDet->getDAC(static_cast<slsDetectorDefs::dacIndex>(sid), dacsUnit->IsOn()).tsquash("Different values"); 
-    cout << "dac " << id << " " << val << endl;
-    dacsValue->SetText(to_string(val).c_str());
-    if (val >= 0) {
-      dacsLabel->SetOn(kTRUE);
-    } else {
-      dacsLabel->SetOn(kFALSE);
-    }
-    return val;
-  } CATCH_DISPLAY ("Could not get dac " + to_string(id) + ".", "ctbDac::getValue")
-  
-  return -1;
-}
-
-
-ctbDacs::ctbDacs(TGVerticalFrame *page, sls::Detector *det)   : TGGroupFrame(page,"DACs",kVerticalFrame) , myDet(det){
-
-  SetTitlePos(TGGroupFrame::kLeft);
-  page->AddFrame(this,new TGLayoutHints( kLHintsTop | kLHintsExpandX , 10,10,10,10));
-  MapWindow();
-  
-  // cout << "window mapped " << endl;
-
-  for (int idac=0; idac<NDACS; idac++) {
-
-     dacs[idac]=new ctbDac(this, idac, myDet);
-
-  }
-  dacs[NDACS]=new ctbDac(this, slsDetectorDefs::ADC_VPP, myDet);
-  dacs[NDACS+1]=new ctbDac(this, slsDetectorDefs::HIGH_VOLTAGE, myDet);
-  dacs[NDACS]->setLabel((char*)"ADC Vpp",2); 
-  dacs[NDACS+1]->setLabel((char*)"High Voltage",3); 
-}
-
-
-int ctbDacs::setDacAlias(string line) {
-  int is=-1, mv=0;
-  char tit[100];
-  int narg=sscanf(line.c_str(),"DAC%d %s %d",&is,tit,&mv);
-  if (narg<2)
-    return -1;
-  if (is>=0 && is<NDACS) 
-    dacs[is]->setLabel(tit,mv);
-  return is;
-
-}
-
-string ctbDacs::getDacAlias() {
-  ostringstream line;
-
-  for (int i=0; i<NDACS; i++)
-    line << dacs[i]->getLabel() << endl;
-  return line.str();
-}
-
-
-
-
-
-string ctbDacs::getDacParameters() {
-  ostringstream line;
-
-  for (int i=0; i<NDACS; i++) {
-    //line << "dacs:" << i << " " << dacs[i]->getValue << endl;
-    line << "dac:" << i << " " << dacs[i]->getValue() << endl;
-  } 
-  return line.str();
-}
-
-
-
-void  ctbDacs::update() {
-  for (int idac=0; idac<NDACS+1; idac++) {
-    dacs[idac]->getValue();
-  }
-}

ctbGui/ctbDacs.h

@@ -1,77 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-#ifndef CTBDACS_H
-#define CTBDACS_H
-#include  <TGFrame.h>
-
-
-#define NDACS 18
-//#define NDACS 16
-
-
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TGCheckButton;
-
-
-namespace sls
-{
-   class Detector;
-};
-
-#include <string>
-using namespace std;
-
-
-class ctbDac : public TGHorizontalFrame {
-
-
- protected:
-  // TGLabel *dacsLabel;
-   TGNumberEntry *dacsEntry;
-   TGCheckButton *dacsUnit;
-   TGCheckButton *dacsLabel;
-   TGLabel *dacsValue;
-   int id;
-
-   sls::Detector* myDet;
- public:
-   ctbDac(TGGroupFrame*, int , sls::Detector*);
-   void setValue();
-   void setValue(Long_t);
-   int getValue();
-   void setOn(Bool_t);
-   
-   int setLabel(char *tit, int mv);
-   string getLabel();
-int getMoenchDacId();
-
-
-   ClassDef(ctbDac,0)
-};
-
-class ctbDacs : public TGGroupFrame {
-private:
-  
-   ctbDac *dacs[NDACS+2];
-
-   sls::Detector* myDet;
-
-public:
-   ctbDacs(TGVerticalFrame *page, sls::Detector*);
-
-   int setDacAlias(string line);
-   // int setDacAlias(string line);
-   string getDacAlias();
-   string getDacParameters();
-
-   void update();
-
-   ClassDef(ctbDacs,0)
-};
-
-#endif
-

ctbGui/ctbDefs.h

@@ -1,86 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#pragma once
-
-#include <string>
-#include <stdexcept>
-#include <chrono>
-
-//#include "sls/sls_detector_exceptions.h"
-//#include "sls/ansi.h"
-#define RED    	 	"\x1b[31m"
-#define RESET   	"\x1b[0m"
-#define BOLD    	"\x1b[1m"
-#define cprintf(code, format, ...) printf(code format RESET, ##__VA_ARGS__)
-
-
-#define CATCH_DISPLAY(m, s) catch(...) { ctbDefs::DisplayExceptions(m, s); }
-#define CATCH_HANDLE(...) catch(...) { ctbDefs::HandleExceptions(__VA_ARGS__); }
-
-class ctbDefs {
-  public:
-    /**
-     * Empty Constructor
-     */
-    ctbDefs(){};
-
-    // convert double seconds to chrono ns
-    static std::chrono::nanoseconds ConvertDoubleStoChronoNS(double timeS) {
-        using std::chrono::duration;
-        using std::chrono::duration_cast;
-        using std::chrono::nanoseconds; 
-        return duration_cast<nanoseconds>(duration<double>(timeS));
-    }
-
-    // convert chrono ns to doubel s
-    static double ConvertChronoNStoDoubleS(std::chrono::nanoseconds timeNs) {
-        using std::chrono::duration;
-        using std::chrono::duration_cast;    
-        return duration_cast<duration<double>>(timeNs).count();
-    }
-
-    static void DisplayExceptions(std::string emsg, std::string src) {
-        try {
-            throw;
-        } /* catch (const sls::SocketError &e) {
-            throw;
-        } catch (const sls::SharedMemoryError &e) {
-            throw;
-        } */catch (const std::exception &e) {
-            ExceptionMessage(emsg, e.what(), src);
-        }
-    };
-
-    template <class CT> struct NonDeduced { using type = CT; };
-    template <class S, typename RT, typename... CT>
-    static void HandleExceptions(const std::string emsg, const std::string src, S* s,
-                                    RT (S::*somefunc)(CT...),
-                                    typename NonDeduced<CT>::type... Args) {
-        try {
-            throw;
-        } /*catch (const sls::SocketError &e) {
-            throw;
-        } catch (const sls::SharedMemoryError &e) {
-            throw;
-        } */catch (const std::exception &e) {
-
-            ExceptionMessage(emsg, e.what(), src);
-            (s->*somefunc)(Args...);
-        }
-    };
-
-    static void ExceptionMessage(std::string message, 
-                    std::string exceptionMessage,
-                    std::string source) {
-        // because sls_detector_exceptions cannot be included
-      if (exceptionMessage.find("hared memory") != std::string::npos) {
-            throw;
-        }
-      if (exceptionMessage.find("annot connect") != std::string::npos) {
-            throw;
-        }
-        cprintf(RED, "Warning (%s): %s [Caught Exception: %s]\n", source.c_str(), message.c_str(), exceptionMessage.c_str());
-        //return Message(qDefs::WARNING, message + std::string("\nCaught exception:\n") + exceptionMessage, source);
-    }; 
-
-};

ctbGui/ctbGui.cpp

@@ -1,159 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#include <TApplication.h>
-#include <TColor.h>
-
-#include <TStyle.h>
-#include <TROOT.h>
-#include <stdlib.h>
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-#include <string>
-
-#include "sls/Detector.h"
-#include "sls/sls_detector_defs.h"
-//#include "sls_receiver_defs.h"
-#include "ctbMain.h"
-#include "ctbDefs.h"
-using namespace std;
-
-
-int main(int argc, char **argv) {
-
-
-  string afname, cfname, pfname;
-  int id=0;
-
-  int af=0, cf=0, pf=0;
-
-
-  cout << " *** " << argc << endl;
-  for (int ia=0; ia<argc; ia++) {
-    if (strcmp(argv[ia],"-alias")==0) {
-      if (ia+1<argc) {
-	afname=argv[ia+1];
-	ia++;
-	af=1;
-      }
-
-    } else if  (strcmp(argv[ia],"-config")==0) {
-      if (ia+1<argc) {
-	cfname=argv[ia+1];
-	ia++;
-	cf=1;
-      }
-
-
-    } else if  (strcmp(argv[ia],"-par")==0) {
-      if (ia+1<argc) {
-  pfname=argv[ia+1];
-	ia++;
-  pf=1;
-      }
-
-
-    } else if  (strcmp(argv[ia],"-id")==0) {
-      if (ia+1<argc) {
-	id=atoi(argv[ia+1]);
-	ia++;
-      }
-    } 
-  }
-  
-
-  cout << " *** "  << endl;
-  sls::Detector *myDet = nullptr;
-  try {
-    /****** Create detector ****************/
-    myDet=new sls::Detector(id);
-    cout << "Created multi detector id " << id << endl;
-
-    if (cf) {
-      myDet->loadConfig(cfname);
-      cout << "Config file loaded successfully" << endl;
-    } else {
-      cout << "No config file specified" << endl;
-    }
-    cout << "hostname " << myDet->getHostname() << endl;
-    
-    if (pf) {
-      myDet->loadParameters(pfname);
-      cout << "Loaded parameter file successfully" << endl;
-    } else{
-      cout  << "No parameter file specified" << endl;
-    }
-  } CATCH_DISPLAY ("Could not create detector/ load config/parameters.", "ctbGui::main")
-
-  /***********Create GUI stuff *******************/
-   TApplication theApp("App",&argc,argv);
-
-
- gStyle->SetDrawBorder(0);
-  gStyle->SetCanvasColor(kWhite);
-  gStyle->SetCanvasDefH(800);
-  gStyle->SetCanvasDefW(800);
-  gStyle->SetCanvasBorderMode(0);
-  gStyle->SetPadBorderMode(0);
-  gStyle->SetPaintTextFormat("5.2f");
-  gStyle->SetLineWidth(2);
-  gStyle->SetTextSize(1.1);
-  gStyle->SetLabelSize(0.04,"xy");
-  gStyle->SetTitleSize(0.05,"xy");
-  gStyle->SetTitleOffset(1.0,"x");
-  gStyle->SetTitleOffset(1.1,"y");
-  gStyle->SetPadTopMargin(0.15);
-  gStyle->SetPadRightMargin(0.15);
-  gStyle->SetPadBottomMargin(0.15);
-  gStyle->SetPadLeftMargin(0.15);
-  gStyle->SetLegendBorderSize(1);
-  gStyle->SetFrameBorderMode(0);
-  gStyle->SetFrameFillColor(kWhite);
-  // gStyle->SetLegendFillColor(kWhite);
-  gStyle->SetTitleFillColor(kWhite);
-  gStyle->SetFillColor(kWhite);
-  gStyle->SetStatFontSize(0.03);
-  gStyle->SetStatBorderSize(1);
-  gStyle->SetStatFormat("6.4g");
-  gStyle->SetStatX(0.95);
-  gStyle->SetStatY(0.95);
-  gStyle->SetStatW(0.2);
-  gStyle->SetStatH(0.2);
-  gStyle->SetTitleX(0.1);
-  gStyle->SetTitleY(0.95);
-  gStyle->SetTitleBorderSize(0);
-  gStyle->SetTitleFontSize(0.05);
-  gROOT->SetStyle("Default");
-
-
-  TColor::InitializeColors();
-  const Int_t NRGBs = 5;
-  const Int_t NCont = 90;
-
-  Double_t stops[NRGBs] = { 0.00, 0.34, 0.61, 0.84, 1.00 };
-  Double_t red[NRGBs]   = { 0.00, 0.00, 0.87, 1.00, 0.51 };
-  Double_t green[NRGBs] = { 0.00, 0.81, 1.00, 0.20, 0.00 };
-  Double_t blue[NRGBs]  = { 0.51, 1.00, 0.12, 0.00, 0.00 };
-  TColor::CreateGradientColorTable(NRGBs, stops, red, green, blue, NCont);
-  gStyle->SetNumberContours(NCont);
-
-
-  gROOT->ForceStyle();
-  ctbMain *mf=new ctbMain(gClient->GetRoot(), myDet);
-
-  cout << " *** " << argc << endl;
-  for (int ia=0; ia<argc; ia++)
-    cout << argv[ia] << endl;
-  
-
-  cout << " *** "  << endl;
-  
-  if (af)
-    mf->loadAlias(afname);
-  else
-    cout << "no alias specified" << endl;
-
-   theApp.Run();
-
-   return 0;
-}

ctbGui/ctbLinkDef.h

@@ -1,17 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#pragma link C++ class ctbMain;
-#pragma link C++ class ctbDacs;
-#pragma link C++ class ctbDac;
-#pragma link C++ class ctbSignals;
-#pragma link C++ class ctbSignal;
-#pragma link C++ class ctbAdc;
-#pragma link C++ class ctbAdcs;
-#pragma link C++ class ctbLoop;
-#pragma link C++ class ctbWait;
-#pragma link C++ class ctbPattern;
-#pragma link C++ class ctbAcquisition;
-#pragma link C++ class ctbPower;
-#pragma link C++ class ctbPowers;
-#pragma link C++ class ctbSlowAdc;
-#pragma link C++ class ctbSlowAdcs;

ctbGui/ctbMain.cpp

@@ -1,588 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#include <TApplication.h>
-#include <TGClient.h>
-#include <TCanvas.h>
-#include <TF1.h>
-#include <TRandom.h>
-#include <TGButton.h>
-#include <TRootEmbeddedCanvas.h>
-#include <TGButtonGroup.h>
-#include <TGNumberEntry.h>
-#include <TGLabel.h>
-#include <TList.h>
-#include <TGFileDialog.h>
-#include <TGComboBox.h>
-#include <TH2F.h>
-#include <TColor.h>
-#include <TH1F.h>
-#include <TGraphErrors.h>
-#include <THStack.h>
-#include <TGTab.h>
-#include <TApplication.h>
-#include <TGCanvas.h>
-#include <stdlib.h>
-
-#include <TGMenu.h>
-#include <TGDockableFrame.h>
-//#include <TGMenuBar.h>
-//#include <TGPopupMenu.h>
-
-
-
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-#include <string>
-
-#include "sls/Detector.h"
-#include "ctbDefs.h"
-#include "ctbMain.h"
-#include "ctbDacs.h"
-#include "ctbSlowAdcs.h"
-#include "ctbPowers.h"
-#include "ctbSignals.h"
-#include "ctbPattern.h"
-#include "ctbAdcs.h"
-#include "ctbAcquisition.h"
-//#include "ctbActions.h"
-
-using namespace std;
-
-
-
-ctbMain::ctbMain(const TGWindow *p, sls::Detector *det)
-  : TGMainFrame(p,800,800), pwrs(NULL), senses(NULL) {
-
-  myDet=det;
-
-  Connect("CloseWindow()", "ctbMain", this, "CloseWindow()");
-
-
-
-
-
-//   fMenuDock = new TGDockableFrame(this);
-//   AddFrame(fMenuDock, new TGLayoutHints(kLHintsExpandX, 0, 0, 1, 0));
-//   fMenuDock->SetWindowName("GuiTest Menu");
-
-  fMenuBarLayout = new TGLayoutHints(kLHintsTop | kLHintsExpandX);
-  fMenuBarItemLayout = new TGLayoutHints(kLHintsTop | kLHintsLeft, 0, 4, 0, 0);
-  fMenuBarHelpLayout = new TGLayoutHints(kLHintsTop | kLHintsRight);
-
-  fMenuFile = new TGPopupMenu(gClient->GetRoot());
-  int im=0;
-
-   fMenuFile->AddEntry("Open Alias", im++);
-   fMenuFile->AddEntry("Save Alias", im++);
-   fMenuFile->AddSeparator();
-   fMenuFile->AddEntry("Open Parameters", im++);
-   fMenuFile->AddEntry("Save Parameters", im++);
-   fMenuFile->AddSeparator();
-   fMenuFile->AddEntry("Open Configuration", im++);
-   fMenuFile->AddEntry("Save Configuration", im++);
-   fMenuFile->AddSeparator();
-   fMenuFile->AddEntry("Open Pattern", im++);
-   fMenuFile->AddEntry("Save Pattern", im++);
-   fMenuFile->AddSeparator();
-   fMenuFile->AddEntry("Exit", im++);
-
-    fMenuFile->Connect("Activated(Int_t)", "ctbMain", this,
-                       "HandleMenu(Int_t)");
- 
-
-    i_dacs=-1;
-    i_pwrs=-1;
-    i_senses=-1;
-    i_sig=-1;
-    i_adcs=-1;
-    i_pat=-1;
-    i_acq=-1;
-
-    int i_page=0;
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-  TGVerticalFrame *vframe=new TGVerticalFrame(this, 800,1200); //main frame
-
-
-
-   fMenuBar = new TGMenuBar(vframe, 1, 1, kHorizontalFrame);
-   fMenuBar->AddPopup("&File", fMenuFile, fMenuBarItemLayout);
-//    fMenuBar->AddPopup("&Test", fMenuTest, fMenuBarItemLayout);
-//    fMenuBar->AddPopup("&View", fMenuView, fMenuBarItemLayout);
-//    fMenuBar->AddPopup("&Help", fMenuHelp, fMenuBarHelpLayout);
-
-   vframe->AddFrame(fMenuBar, fMenuBarLayout);
-
-  TGHorizontalFrame* hpage=new TGHorizontalFrame(vframe, 800,1200); //horizontal frame. Inside there should be the tab and the canvas
-  mtab=new TGTab(hpage, 1500, 1200); //tab!
-  //  page=new TGVerticalFrame(mtab, 1500,1200);
-
-  cout << "DACS" << endl;
-
-  TGCompositeFrame *tf = mtab->AddTab("DACs");
-  TGVerticalFrame *page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  dacs=new ctbDacs(page, myDet);
-  i_dacs=i_page++;
-  
-
-  cout << "power " << endl;
-  tf = mtab->AddTab("Power Supplies");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  pwrs=new ctbPowers(page, myDet);
-
-  i_pwrs=i_page++;
-
-  cout << "sense " << endl;
-  tf = mtab->AddTab("Sense");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  senses=new ctbSlowAdcs(page, myDet);
-
-  i_senses=i_page++;
-
-
- 
-  cout << "signals " << endl;
-  tf = mtab->AddTab("Signals");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  sig=new ctbSignals(page, myDet);
-  sig->Connect("ToggledSignalPlot(Int_t)","ctbMain",this,"setSignalPlot(Int_t)");
-
-  i_sig=i_page++;
-
-  cout << "adcs " << endl;
-  tf = mtab->AddTab("ADCs");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  adcs=new ctbAdcs(page, myDet);
-  adcs->Connect("ToggledAdcPlot(Int_t)","ctbMain",this,"setADCPlot(Int_t)");
-  adcs->Connect("AdcEnable(Int_t)","ctbMain",this,"setADCEnable(Int_t)");
-  i_adcs=i_page++;
-
-
-  cout << "pattern" << endl;
-
-  tf = mtab->AddTab("Pattern");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  pat=new ctbPattern(page, myDet);
-  pat->Connect("patternFileChanged(const char*)","ctbMain",this,"setPatternFile(const char*)");
-  pat->Connect("patternCompilerChanged(const char*)","ctbMain",this,"setPatternCompiler(const char*)");
-  pat->Connect("analogSamplesChanged(const int)","ctbMain",this,"setAnalogSamples(int)");
-  pat->Connect("digitalSamplesChanged(const int)","ctbMain",this,"setDigitalSamples(int)");
-  pat->Connect("readoutModeChanged(int)","ctbMain",this,"setReadoutMode(int)");
-
-  i_pat=i_page++;
-
-  cout << "acquisition" << endl;
-
-  tf = mtab->AddTab("Acquisition");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  acq=new ctbAcquisition(page, myDet);
-
-
-  i_acq=i_page++;
-
-
-  // cout << "actions" << endl;
-  // tf = mtab->AddTab("Actions");
-  // page=new TGVerticalFrame(tf, 1500,1200);
-  // tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  // actions=new ctbActions(page, myDet);
-
-
-  // i_actions=i_page++;
-
-
-
-   cout << "tabs finished" << endl;
-
-  hpage->AddFrame(mtab,new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-
-  vframe->AddFrame(hpage,new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  
-  AddFrame(vframe,new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  vframe->MapWindow();
-  hpage->MapWindow();
-  mtab->MapWindow();
-  page->MapWindow();
-
-  // Sets window name and shows the main frame
-   cout << "dockabel" << endl;
-   TGDockableFrame *fdock=new TGDockableFrame(hpage);
-   hpage->AddFrame(fdock, new TGLayoutHints(kLHintsBottom | kLHintsCenterX | kLHintsExpandX | kLHintsExpandY, 10,10,10,10));
-   fdock->MapWindow();
-
-   cout << "canvas" << endl;
-//    // Creates widgets of the example
-
-
-   fEcanvas = new TRootEmbeddedCanvas ("Ecanvas",fdock,800,800);//hpage,800,800);
-   //fEcanvas = new TRootEmbeddedCanvas ("Ecanvas",this,800,800);//hpage,800,800);
-  // fEcanvas->Resize();
-  //  fEcanvas->GetCanvas()->Update();
-  //AddFrame(fEcanvas, new TGLayoutHints(kLHintsBottom | kLHintsCenterX | kLHintsExpandX | kLHintsExpandY, 10,10,10,10));
-
-  // // hpage->
-  fdock->AddFrame(fEcanvas, new TGLayoutHints(kLHintsBottom | kLHintsCenterX | kLHintsExpandX | kLHintsExpandY, 10,10,10,10));
-
-
-  fEcanvas->MapWindow();
-
-  acq->setCanvas(getCanvas());
-
-
-
-  hpage->MapSubwindows();
-   mtab->Connect("Selected(Int_t)","ctbMain",this,"tabSelected(Int_t)");
-
-
-
-   cout << "connect mtab" << endl;
-
-  try{  
-   setReadoutMode(pat->getReadoutMode());  
-  } CATCH_DISPLAY ("Could not get readout flags", "ctbPattern::getReadoutMode")
-
-   setADCEnable(adcs->setEnable());
-   setAnalogSamples(pat->getAnalogSamples());
-   setDigitalSamples(pat->getDigitalSamples());
-   
-   tabSelected(0);
-
-   SetWindowName("CTB Gui");
-   MapSubwindows();
-   Resize(1500,1200);
-
-   MapWindow();
-}
-
-void ctbMain::CloseWindow() {
-   gApplication->Terminate();
-}
-
-TCanvas* ctbMain::getCanvas() {
-  return fEcanvas->GetCanvas();
-}
-
-
-
-void ctbMain::HandleMenu(Int_t id)
-{
-   // Handle menu items.
-   
-  
- 
-
-   switch (id) {
-
-   case 0:   // fMenuFile->AddEntry("Open Alias", im++);
-     cout << "Open Alias" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDOpen, &fi);
-             printf("Open file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       loadAlias(fi.fFilename);
-          }
-         break;
-
-   case 1: // fMenuFile->AddEntry("Save Alias", im++);
-     cout << "Save Alias" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDSave, &fi);
-             printf("Save file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       saveAlias(fi.fFilename);
-          }
-         break;
-   case 2: //fMenuFile->AddEntry("Open Parameters", im++);
-     cout << "Open Parameters" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDOpen, &fi);
-             printf("Open file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       loadParameters(fi.fFilename);
-          }
-         break;
-
-   case 3: // fMenuFile->AddEntry("Open Configuration", im++);
-     cout << "Open configuration" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDOpen, &fi);
-             printf("Open file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       loadConfiguration(fi.fFilename);
-          }
-         break;
- 
-   case 4: //fMenuFile->AddEntry("Open Pattern", im++);
-     cout << "Open pattern" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDOpen, &fi);
-             printf("Open file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       loadParameters(fi.fFilename);
-          }
-     break;
-
-   case 5:   //fMenuFile->AddEntry("Save Pattern", im++);
-     cout << "Save pattern" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDSave, &fi);
-             printf("Open file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       savePattern(fi.fFilename);
-          }
-         break;
-
-   case 6: //  fMenuFile->AddEntry("Exit", im++);
-     CloseWindow();
-
-      default:
-         printf("Menu item %d selected\n", id);
-         break;
-   }
-}
-
-
-
-int  ctbMain::setADCPlot(Int_t i) {
-
-  //  cout << "ADC " << i << " plot or color toggled" << endl;
-  //  acq->setGraph(i,adcs->getGraph(i));
-  acq->setGraph(i,adcs->getEnabled(i),adcs->getColor(i));
-  return -1;
-}
-
-
-int  ctbMain::setSignalPlot(Int_t i) {
-
-  //  cout << "ADC " << i << " plot or color toggled" << endl;
-  //  acq->setGraph(i,adcs->getGraph(i));
-  acq->setBitGraph(i,sig->getPlot(i),sig->getColor(i));
-  return -1;
-}
-
-
-
-void  ctbMain::loadConfiguration(string fname) {
-  try{
-    myDet->loadConfig(fname);
-  } CATCH_DISPLAY ("Could not load config.", "ctbMain::loadConfiguration")
-}
-
-void  ctbMain::loadParameters(string fname) {
-  try{
-    myDet->loadParameters(fname);
-  } CATCH_DISPLAY ("Could not load parameters.", "ctbMain::loadParameters")
-}
-
-void  ctbMain::savePattern(string fname) {
-  try{
-    myDet->savePattern(fname);
-  } CATCH_DISPLAY ("Could not save pattern.", "ctbMain::savePattern")
-}
-
-
-
-int  ctbMain::loadAlias(string fname) {
-
-
-  string line;
-  char aaaa[1000];
-  int i;
-  ifstream myfile (fname.c_str());
-  if (myfile.is_open())
-  {
-    while ( getline (myfile,line) )
-    {
-      // cout << line ;
-      if (sscanf(line.c_str(),"BIT%d",&i)>0) {
-	//cout << "*******" << line<< endl;
-	sig->setSignalAlias(line);
-      // cout << line ;
-      } else if (sscanf(line.c_str(),"DAC%d",&i)>0) {
-	dacs->setDacAlias(line);
-	//	cout << "+++++++++" << line<< endl;
-      } else if (sscanf(line.c_str(),"ADC%d",&i)>0) {
-	adcs->setAdcAlias(line);
-	//	cout << "---------" << line<< endl;
-      }      //  else
-      //	cout << "<<<<<<<" << line << endl;
-      else if (sscanf(line.c_str(),"PAT%s",aaaa)>0) {
-	pat->setPatternAlias(line);
-	//	cout << "---------" << line<< endl;
-      }	else if (sscanf(line.c_str(),"V%s",aaaa)>0) {
-	    if (pwrs)	pwrs->setPwrAlias(line);
-	//	cout << "+++++++++" << line<< endl;
-      } else if (sscanf(line.c_str(),"SENSE%d",&i)>0) {
-	if (senses) senses->setSlowAdcAlias(line);
-	//	cout << "+++++++++" << line<< endl;
-      } 
-      
-    }
-    myfile.close();
-  }
-
-  else cout << "Unable to open file"; 
-
-  return 0;
-
-}
-
-
-
-
-
-int  ctbMain::saveAlias(string fname) {
-
-
-  string line;
-  ofstream myfile (fname.c_str());
-  if (myfile.is_open())
-  {
-    //while ( getline (myfile,line) )
-    // {
-      // cout << line ;
-      //if (sscanf(line.c_str(),"BIT%d",&i)>0) {
-	//cout << "*******" << line<< endl;
-    myfile << sig->getSignalAlias();
-      // cout << line ;
-    //  } else if (sscanf(line.c_str(),"DAC%d",&i)>0) {
-    myfile << dacs->getDacAlias();
-    if (pwrs) myfile << pwrs->getPwrAlias();
-    if (senses) myfile << senses->getSlowAdcAlias();
-	//	cout << "+++++++++" << line<< endl;
-    //  } else if (sscanf(line.c_str(),"ADC%d",&i)>0) {
-    myfile << adcs->getAdcAlias();
-	//	cout << "---------" << line<< endl;
-    //  }      //  else
-      //	cout << "<<<<<<<" << line << endl;
-    myfile << pat->getPatternAlias();
-      
-    //}
-    myfile.close();
-  }
-
-  else cout << "Unable to open file"; 
-
-  return 0;
-
-}
-
-
-
-
-
-
-
-
-
-
-
-void ctbMain::tabSelected(Int_t i) {
-
-  //  cout << "Selected tab " << i << endl;
-  // cout << "Current tab is " <<  mtab->GetCurrent() << endl;
-
-  if (i==i_dacs) dacs->update();
-  else if (i==i_pwrs) pwrs->update();
-  else if (i==i_senses) ;//senses->update();
- else if (i==i_sig) sig->update();
- else if (i==i_adcs) adcs->update();
- else if (i==i_pat) pat->update();
- else if (i==i_acq) acq->update();
- else if (i==i_acq) acq->update();
-  // else if (i==i_actions) actions->update();
- else cout << "Unknown tab " << i << endl;
- 
-
-}
-
-void ctbMain::setPatternFile(const char* t) {
-  acq->setPatternFile(t);
-
-}
-
-void ctbMain::setPatternCompiler(const char* t) {
-  acq->setPatternCompiler(t);
-
-
-}
-
-void ctbMain::setAnalogSamples(const int n) {
-  acq->setAnalogSamples(n);
-
-
-}
-
-void ctbMain::setDigitalSamples(const int n) {
-  acq->setDigitalSamples(n);
-
-
-}
-
-void ctbMain::setReadoutMode(int flags) {
-  acq->setReadoutMode(flags);
-}
-
-void ctbMain::setADCEnable(Int_t reg){
-  acq->setADCEnable(reg);
-}

ctbGui/ctbMain.h

@@ -1,130 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef CTBMAIN_H
-#define CTBMAIN_H
-#include <TGFrame.h>
-
-
-class TRootEmbeddedCanvas;
-class TGButtonGroup;
-class TGVerticalFrame;
-class TGHorizontalFrame;
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TH2F;
-class TGComboBox;
-class TGCheckButton;
-
-class   THStack;
-class   TGraphErrors;
-class  TGTextButton;
-class  TGTab;
-
-class   TGMenuBar;
-class   TGPopupMenu;
-class   TGDockableFrame;
-class TGLayoutHints;
-class TGCanvas;
-class TCanvas;
-
-class   ctbDacs;
-class   ctbSlowAdcs;
-class   ctbPowers;
-
- 
-class  ctbSignals;
-
-namespace sls
-{
-   class Detector;
-};
-
-class  ctbPattern;
-class  ctbAdcs;
-class  ctbAcquisition;
-//class  ctbActions;
-
-#include <string>
-using namespace std;
-
-class ctbMain : public TGMainFrame { 
-private:
-
-
-  sls::Detector *myDet;
-
-
-
-   TRootEmbeddedCanvas *fEcanvas;
-   TRootEmbeddedCanvas *fModulecanvas;
-   TGButtonGroup *br;
-   
-   TGTab *mtab;
-
-   
-   ctbDacs *dacs;
-   int i_dacs;
-
-   ctbPowers *pwrs;
-   int i_pwrs;
-
-   ctbSlowAdcs *senses;
-   int i_senses;
-
- 
-  ctbSignals *sig;
-  int i_sig;
-
-
-  ctbAdcs *adcs;
-  int i_adcs;
-  
-
-  ctbPattern *pat;
-  int i_pat;
-
-  ctbAcquisition *acq;
-  int i_acq;
-
-  // ctbActions *actions;
-  int i_actions;
-
-   TGDockableFrame    *fMenuDock;
-
-   TGMenuBar          *fMenuBar;
-   TGPopupMenu        *fMenuFile, *fMenuTest, *fMenuView, *fMenuHelp;
-   TGPopupMenu        *fCascadeMenu, *fCascade1Menu, *fCascade2Menu;
-   TGPopupMenu        *fMenuNew1, *fMenuNew2;
-   TGLayoutHints      *fMenuBarLayout, *fMenuBarItemLayout, *fMenuBarHelpLayout;
-   TGCanvas *myCanvas;
-
-
-public:
-   ctbMain(const TGWindow *p, sls::Detector *det);
-
-
-   int  loadAlias(string fname);
-   int  saveAlias(string fname);
-   void  loadParameters(string fname);
-   void  savePattern(string fname);
-   void  loadConfiguration(string fname);
-   void tabSelected(Int_t);
-   int setADCPlot(Int_t);
-   int setSignalPlot(Int_t);
-   void CloseWindow();
-
-   void setPatternFile(const char* t);
-
-   void setPatternCompiler(const char* t);
-   void setAnalogSamples(const int);
-   void setDigitalSamples(const int);
-   void setReadoutMode(int);
-   void setADCEnable(Int_t);
-
-   void HandleMenu(Int_t);
-   TCanvas* getCanvas();
-   ClassDef(ctbMain,0)
-};
-
-#endif

ctbGui/ctbPattern.h

@@ -1,181 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef CTBPATTERN_H
-#define CTBPATTERN_H
-#include  <TGFrame.h>
-
-
-#define NLOOPS 3
-#define NWAITS 3
-#define NADCS 32
-#define PATLEN 1024
-
-class TRootEmbeddedCanvas;
-class TGButtonGroup;
-class TGVerticalFrame;
-class TGHorizontalFrame;
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TH2F;
-class TGComboBox;
-class TGCheckButton;
-class TGTextEntry;
-class TGCheckButton;
-
-class   THStack;
-class   TGraphErrors;
-class energyCalibration;
-class  TGTextButton;
-class  TGTab;
-
-namespace sls
-{
-   class Detector;
-};
-
-
-#include <string>
-using namespace std;
-
-
-
-class ctbLoop : public TGHorizontalFrame {
- 
-
- private:
-
-   TGNumberEntry *eLoopStartAddr; 
-   TGNumberEntry *eLoopStopAddr; 
-   TGNumberEntry *eLoopNumber; 
-
-   int id;
-
-   sls::Detector *myDet;
-
- public:
-   ctbLoop(TGGroupFrame *page, int i,sls::Detector *det);
-   
-   void setNLoops();
-   void update();
-
-   ClassDef(ctbLoop,0)
-     };
-
-class ctbWait : public TGHorizontalFrame {
- 
-
- private:
-
-   TGNumberEntry *eWaitAddr; 
-   TGNumberEntry *eWaitTime; 
-
-   int id;
-
-   sls::Detector *myDet;
-
- public:
-   ctbWait(TGGroupFrame *page, int i,sls::Detector *det);
-   
-   void setWaitTime();
-   void update();
-
-   ClassDef(ctbWait,0)
-     };
-
-
-
-
-
-
-
-class ctbPattern : public TGGroupFrame {
-private:
-   
-
-   TGNumberEntry *eAdcClkFreq;
-   TGNumberEntry *eRunClkFreq;
-   TGNumberEntry *eDBitClkFreq;
-   TGNumberEntry *eAdcClkPhase;
-   TGNumberEntry *eDBitClkPhase;
-   //TGNumberEntry *eRunClkPhase;
-
-   TGNumberEntry *eStartAddr;
-   TGNumberEntry *eStopAddr;
-   TGNumberEntry *eFrames;
-   TGNumberEntry *ePeriod;
-   TGNumberEntry *eTriggers;
-   // TGNumberEntry *eMeasurements;
-   TGNumberEntry *eAdcPipeline;
-   TGNumberEntry *eDBitPipeline;
-   
-   ctbLoop *eLoop[NLOOPS];
-   ctbWait *eWait[NWAITS];
-
-   TGTextEntry *patternCompiler;
-   TGTextEntry *patternFile;
-   
-   TGTextButton *browseCompiler;
-   TGTextButton *browseFile;
-   
-
-   TGNumberEntry *eAnalogSamples;
-   TGNumberEntry *eDigitalSamples;
-
-  TGCheckButton *cbAnalog;
-  TGCheckButton *cbDigital;
-  
-   char pat[PATLEN*8];
-
-   sls::Detector *myDet;
-
-public:
-
-   ctbPattern(TGVerticalFrame *page, sls::Detector *det);
-
-   void update();
-   void setAdcFreq();
-   void setRunFreq();
-   void setDBitFreq();
-   void setAdcPhase();
-   void setDBitPhase();
-   // void setRunPhase();
-   void setAdcPipeline();
-   void setDBitPipeline();
-   void setFrames();
-   void setTriggers();
-   // void setMeasurements();
-   void setPeriod();
-
-   
-   void chooseCompiler();
-   void choosePattern();
-
-   string getCompiler();
-   string getPatternFile();
-   
-   void setPatternAlias(string);
-   string getPatternAlias();
-
-
-   int getAnalogSamples();
-   void  setAnalogSamples();
-   int getDigitalSamples();
-   void  setDigitalSamples();
-   void  setReadoutMode(Bool_t);
-   int  getReadoutMode();
-
-
-   void setFile();
-   void setCompiler();
-   void patternFileChanged(const char*);
-   void patternCompilerChanged(const char*);
-   void analogSamplesChanged(const int t);
-   void digitalSamplesChanged(const int t);
-   void readoutModeChanged(int);
-
-
-   ClassDef(ctbPattern,0)
-};
-
-#endif

ctbGui/ctbPowers.cpp

@@ -1,225 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#include  <TGFrame.h>
-
-
-#include <TGButtonGroup.h>
-#include <TGNumberEntry.h>
-#include <TGLabel.h>
-#include <TList.h>
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-
-#include "ctbDefs.h"
-#include "ctbDacs.h"
-#include "ctbPowers.h"
-#include "sls/Detector.h"
-#include "sls/sls_detector_defs.h"
-
-using namespace std;
-
-
-
-ctbPower::ctbPower(TGGroupFrame* f, int i,  sls::Detector* d)
-  : ctbDac(f, i, d) 
-{
-  cout << "****************************************************************power " << i << endl;
-     dacsUnit->SetOn(kTRUE); 
-     dacsUnit->SetEnabled(kFALSE);
-
-     switch(i) {
-     case slsDetectorDefs::V_POWER_IO: 
-     	 dacsLabel->SetText("VIO"); 
-     	 break; 
-     case slsDetectorDefs::V_POWER_A: 
-     	 dacsLabel->SetText("VA"); 
-     	 break;  
-     case slsDetectorDefs::V_POWER_B: 
-     	 dacsLabel->SetText("VB"); 
-     	 break;   
-     case slsDetectorDefs::V_POWER_C: 
-     	 dacsLabel->SetText("VC");
-     	 break;    
-     case slsDetectorDefs::V_POWER_D: 
-     	 dacsLabel->SetText("VD");
-     	 break;      
-     case slsDetectorDefs::V_POWER_CHIP: 
-     	 dacsLabel->SetText("VCHIP"); 
-     	 dacsLabel->SetEnabled(kFALSE);
-     	 break;    
-     default: 
-     	 dacsLabel->SetText("Bad index"); 
-     	 break; 
-     };
-     
-
-     TGTextEntry *e=dacsEntry->TGNumberEntry::GetNumberEntry();
-     e->Disconnect 	("ReturnPressed()");
-     e->Disconnect 	("ValueSet(Long_t)");
-     
-     e->Connect("ReturnPressed()","ctbPower",this,"setValue()");
-     dacsEntry->Connect("ValueSet(Long_t)","ctbPower",this,"setValue(Long_t)");
- };
-
-
-string ctbPower::getLabel() {
-
-  ostringstream line;
-  switch (id) {
-     case slsDetectorDefs::V_POWER_IO: 
-	 line << "VIO"; 
-	 break; 
-     case slsDetectorDefs::V_POWER_A: 
-	 line << "VA"; 
-	 break;  
-     case slsDetectorDefs::V_POWER_B: 
-	 line << "VB"; 
-	 break;   
-     case slsDetectorDefs::V_POWER_C: 
-	 line << "VC"; 
-	 break;    
-     case slsDetectorDefs::V_POWER_D: 
-	 line << "VD"; 
-	 break;      
-     case slsDetectorDefs::V_POWER_CHIP: 
-	 line << "VCHIP"; 
-	 break;    
-     default:  
-	 line << "VBAD"; 
-	 break; 
-
-  }
-  line << " " <<  dacsLabel->GetText() << endl;
-  return line.str();
-}
-
-void ctbPower::setValue(Long_t a) {ctbPower::setValue();}
-
-void ctbPower::setValue() {
-  cout << "***************************Setting power " << dacsEntry->GetIntNumber() << " " << id << " " << 1 << endl;
- 
-  try {
-    myDet->setVoltage(static_cast<slsDetectorDefs::dacIndex>(id), dacsEntry->GetIntNumber());
-  } CATCH_DISPLAY ("Could not set power " + to_string(id) + ".", "ctbPower::setValue")
-
-  getValue();
-}
-
-
-int ctbPower::getValue() {
-  try {
-
-  int val = myDet->getVoltage(static_cast<slsDetectorDefs::dacIndex>(id)).tsquash("Different values");
-  cout << "****************************Getting power " << val << " " << id << " " << 1 << endl;
-
-  dacsValue->SetText(to_string(val).c_str());
-  if (val > 0) {
-    if (id != static_cast<int>(slsDetectorDefs::V_POWER_CHIP))
-      dacsLabel->SetOn(kTRUE);
-  } else {
-    dacsLabel->SetOn(kFALSE);
-  }
-
-  return val;
-
-  } CATCH_DISPLAY ("Could not get power " + to_string(id) + ".", "ctbPower::getValue") 
-
-  return -1;
-}
-
-
-
-ctbPowers::ctbPowers(TGVerticalFrame* page, sls::Detector* det)   : TGGroupFrame(page,"Power Supplies",kVerticalFrame) , myDet(det){
-
-
-  SetTitlePos(TGGroupFrame::kLeft);
-  page->AddFrame(this,new TGLayoutHints( kLHintsTop | kLHintsExpandX , 10,10,10,10));
-  MapWindow();
-  
-  // cout << "window mapped " << endl;
-
-  for (int idac=0; idac<NPOWERS; idac++) {
-     dacs[idac]=new ctbPower(this, slsDetectorDefs::V_POWER_A+idac, myDet);
-
-  }
-}
-
-
-int ctbPowers::setPwrAlias(string line) {
-
-  int is=-1;
-  char tit[100];
-
-  if (sscanf(line.c_str(),"VA %s",tit)) {
-    dacs[0]->setLabel(tit,1);
-    is=0;
-  }
-
-  if (sscanf(line.c_str(),"VB %s",tit)) {
-    dacs[1]->setLabel(tit,1);
-    is=1;
-  }
-
-  if (sscanf(line.c_str(),"VC %s",tit)) {
-    dacs[2]->setLabel(tit,1);
-    is=2;
-  }
-
-  if (sscanf(line.c_str(),"VD %s",tit)) {
-    dacs[3]->setLabel(tit,1);
-    is=3;
-  }
-
-  if (sscanf(line.c_str(),"VIO %s",tit)) {
-    dacs[4]->setLabel(tit,1);
-    is=4;
-  }
-
-  if (sscanf(line.c_str(),"VCHIP %s",tit)) {
-    dacs[5]->setLabel(tit,1);
-    is=5;
-  }
-    
-  return is;
-
-}
-
-string ctbPowers::getPwrAlias() {
-
-  ostringstream line;
-
-  for (int i=0; i<NPOWERS; i++)
-    line << dacs[i]->getLabel() << endl;
-  return line.str();
-
-}
-
-
-
-
-string ctbPowers::getPwrParameters() {
-
-  ostringstream line;
-  line << "v_a" << " " << dacs[0]->getValue() << " mv" << endl;
-  line << "v_b" << " " << dacs[1]->getValue() << " mv" << endl;
-  line << "v_c" << " " << dacs[2]->getValue() << " mv" << endl;
-  line << "v_d" << " " << dacs[3]->getValue() << " mv" << endl;
-  line << "v_io" << " " << dacs[4]->getValue() << " mv" << endl;
-  line << "v_chip" << " " << dacs[5]->getValue() << " mv" << endl;
-  // for (int i=0; i<POWERS; i++) {
-  //   //line << "dacs:" << i << " " << dacs[i]->getValue << endl;
-  //   line << "dac:" << i << " " << dacs[i]->getValue() << endl;
-  // } 
-  return line.str();
-}
-
-
-
-void  ctbPowers::update() {
-  for (int idac=0; idac<NPOWERS; idac++) {
-    dacs[idac]->getValue();
-
-  }
-}

ctbGui/ctbPowers.h

@@ -1,69 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef CTBPOWERS_H
-#define CTBPOWERS_H
-
-#include  <TGFrame.h>
-
-#define NPOWERS 6
-
-
-
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TGCheckButton;
-
-
-
-
-namespace sls
-{
-   class Detector;
-};
-
-#include <string>
-using namespace std;
-
-
-class ctbPower : public ctbDac {
-
-  
-
-
- public:
-
-  ctbPower(TGGroupFrame* f, int i, sls::Detector* d);
-
-    string getLabel();
-
-    int getValue();
-    void setValue();
-    void setValue(Long_t);
-
-   ClassDef(ctbPower,0)
-};
-
-
-class ctbPowers : public TGGroupFrame 
-{
- private:
-  
-   ctbPower *dacs[NPOWERS]; 
-
-   sls::Detector* myDet; 
-
-public:
-   //ctbPowers();
-    ctbPowers(TGVerticalFrame*, sls::Detector*);
-
-    int setPwrAlias(string); 
-    string getPwrAlias(); 
-    string getPwrParameters(); 
-
-    void update(); 
-
-    ClassDef(ctbPowers,0)
-};
-
-#endif

ctbGui/ctbSignals.cpp

@@ -1,543 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#include <TApplication.h>
-#include <TGClient.h>
-#include <TCanvas.h>
-#include <TF1.h>
-#include <TRandom.h>
-#include <TGButton.h>
-#include <TRootEmbeddedCanvas.h>
-#include <TGButtonGroup.h>
-#include <TGNumberEntry.h>
-#include <TGLabel.h>
-#include <TList.h>
-#include <TGFileDialog.h>
-#include <TGComboBox.h>
-#include <TH2F.h>
-#include <TColor.h>
-#include <TH1F.h>
-#include <TGraphErrors.h>
-#include <THStack.h>
-#include <TGTab.h>
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-#include <TGButton.h>
-#include <TRootEmbeddedCanvas.h>
-#include <TGButtonGroup.h>
-#include <TGNumberEntry.h>
-#include <TGLabel.h>
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-#include <TColor.h>
-#include <TGColorSelect.h>
-
-
-#include "ctbSignals.h"
-#include "ctbDefs.h"
-#include "sls/Detector.h"
-
-using namespace std;
-
-
-
-//#define DEFAULTFN "run_0.encal"
-
-
-ctbSignal::ctbSignal(TGFrame *page, int i,  sls::Detector *det)
-  : TGHorizontalFrame(page, 800,50), myDet(det), id(i), hsig(NULL) {
-
-
-  TGHorizontalFrame *hframe=this;
-  char tit[100];
-
-
-   
-   sprintf(tit, "BIT%d ",id);
-
-   sLabel= new TGLabel(hframe, tit);
-   hframe->AddFrame( sLabel,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sLabel->MapWindow();
-   sLabel->SetTextJustify(kTextLeft);
-
-
-
-   sOutput= new TGCheckButton(hframe, "Out");
-   hframe->AddFrame( sOutput,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sOutput->MapWindow();
-
- 
-   sOutput->Connect("Toggled(Bool_t)","ctbSignal",this,"ToggledOutput(Bool_t)");
-
-   sDbitList= new TGCheckButton(hframe, "DB List");
-   hframe->AddFrame( sDbitList,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sDbitList->MapWindow();
-
-   sDbitList->Connect("Toggled(Bool_t)","ctbSignal",this,"ToggledDbitList(Bool_t)");
-
-
-   sPlot= new TGCheckButton(hframe, "Plot");
-   hframe->AddFrame( sPlot,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sPlot->MapWindow();
-
-   sPlot->Connect("Toggled(Bool_t)","ctbSignal",this,"ToggledPlot(Bool_t)");
-   
-   fColorSel = new TGColorSelect(hframe, id+1, 0);
-   fColorSel->Connect("ColorSelected(Pixel_t)","ctbSignal",this,"ColorChanged(Pixel_t)");
-   hframe->AddFrame(fColorSel, new TGLayoutHints(kLHintsTop |
-                          kLHintsLeft, 2, 0, 2, 2));
-   
-
-   fColorSel->SetColor(TColor::Number2Pixel(id+1));
-
-   
-   ToggledOutput(kFALSE);
-
-  
-   ToggledPlot(kFALSE);
-
-  //  if (id==63) {
-//      sOutput->SetOn(kTRUE);
-//      sOutput->SetEnabled(kFALSE);
-//    }
-// #ifdef CTB
-//    if (id==62) {
-//      sOutput->SetOn(kTRUE);
-//      sOutput->SetEnabled(kFALSE);
-//    }
-
-//    // if (id>=32 && id<48)
-//    //   fixOutput(1);
-//    // else if (id>=48 && id<64)
-//    //   fixOutput(0);
-
-// #endif
-}
-int ctbSignal::setSignalAlias(char *tit, int plot, int col) {
-
-  if (tit)
-    sLabel->SetText(tit);
-
-  if (plot>0) {
-      sPlot->SetOn(kTRUE,kTRUE); 
-  } else if (plot==0)
-      sPlot->SetOn(kFALSE,kTRUE);
-    
-  if (col>=0)
-    fColorSel->SetColor(col);//TColor::Number2Pixel(col+1));
-
-  fColorSel->SetEnabled(sPlot->IsOn());
-  return 0;
-
-}
-
-string ctbSignal::getSignalAlias() {
-  
-
-  ostringstream oss;
-  oss << "BIT" << dec << id << " " << sLabel->GetText()->Data() << " " << sPlot->IsOn() << hex << " " << fColorSel->GetColor() << endl;
-  return oss.str();
-
-
-
-
-}
-int ctbSignal::setOutput(Long64_t r) {
-
-
-  //  cout << hex << r << dec <<endl;
-
-  Long64_t mask=((Long64_t)1<<id);
-
-  if (r&mask)
-      sOutput->SetOn(kTRUE,kTRUE);
-  else 
-      sOutput->SetOn(kFALSE,kTRUE);
-    
-  return sOutput->IsOn();
-
-}
-
-int ctbSignal::fixOutput(int i) {
-
-  if (i) {
-    sPlot->SetOn(kFALSE);
-    //sClock->SetOn(kFALSE,kTRUE);
-    sOutput->SetOn(kTRUE);
-    //   sPlot->SetEnabled(kFALSE);
-    //  sClock->SetEnabled(kTRUE);
-  } else {
-    sOutput->SetOn(kFALSE,kTRUE);
-    //  sClock->SetOn(kFALSE);  
-    // sClock->SetEnabled(kFALSE);
-    sPlot->SetEnabled(kTRUE);
-  }
-  sOutput->SetEnabled(kFALSE);
-  return 0;
-
-}
-
-int ctbSignal::setDbitList(Long64_t r) {
-
-  if (r)
-      sDbitList->SetOn(kTRUE,kFALSE);
-  else 
-      sDbitList->SetOn(kFALSE,kFALSE);
-    
-  return sDbitList->IsOn();
-
-}
-
-int ctbSignal::isDbitList() { return sDbitList->IsOn();}
-int ctbSignal::isOutput() { return sOutput->IsOn();}
-int ctbSignal::isPlot() { return sPlot->IsOn();}
-Pixel_t ctbSignal::getColor(){return fColorSel->GetColor();}
-
-void ctbSignal::ToggledOutput(Bool_t b) {
-  ToggledSignalOutput(id);
-  if (b) {
-    // sClock->SetEnabled(kTRUE);
-    sPlot->SetOn(kFALSE);
-    // sPlot->SetEnabled(kFALSE);
-    fColorSel->SetEnabled(kFALSE);
-  } else {
-    // sClock->SetEnabled(kFALSE);
-    // sClock->SetOn(kFALSE);
-    sPlot->SetEnabled(kTRUE);
-    if ( sPlot->IsOn())
-      fColorSel->SetEnabled(kFALSE);
-    else
-      fColorSel->SetEnabled(kTRUE);
-  }
-
-
-}
-
-void ctbSignal::ToggledDbitList(Bool_t b){
-  Long_t mask=id;
-  ToggledSignalDbitList(mask);
-}
-
-
-void ctbSignal::ToggledPlot(Bool_t b){
-  Long_t mask=b<<id;
-  ToggledSignalPlot(mask);
-  fColorSel->SetEnabled(b);
-}
-
-void ctbSignal::ColorChanged(Pixel_t p){
-  ToggledSignalPlot(id);
-}
-
-
-void ctbSignal::ToggledSignalOutput(Int_t b) {
-  cout << "Toggle signal " << id << " " << b  << " " <<  sOutput->IsOn() <<endl;;
-  Emit("ToggledSignalOutput(Int_t)", id);
-}
-
-void ctbSignal::ToggledSignalDbitList(Int_t b){
-  cout << "Toggle dbitlist " << id << " " << b << endl;;
-  Emit("ToggledSignalDbitList(Int_t)", id);
-}
-
-void ctbSignal::ToggledSignalPlot(Int_t b){
-  Emit("ToggledSignalPlot(Int_t)", id);
-}
-
-
-ctbSignals::ctbSignals(TGVerticalFrame *page, sls::Detector *det)
-  : TGGroupFrame(page,"IO Signals",kVerticalFrame), myDet(det) {
-
-
-  SetTitlePos(TGGroupFrame::kLeft);
-  page->AddFrame(this,new TGLayoutHints( kLHintsTop | kLHintsExpandX , 10,10,10,10));
-  MapWindow();
-  
-
-  TGHorizontalFrame *hframe;
- 
-  TGHorizontalFrame* hhframe=new TGHorizontalFrame(this, 800,800);
-  AddFrame(hhframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hhframe->MapWindow();
-
-  TGVerticalFrame *vframe;
-
-
-
-
-  int idac=0;
-  for (idac=0; idac<NSIGNALS; idac++) {
-    if (idac%((NSIGNALS+2)/2)==0) {
-    vframe=new TGVerticalFrame(hhframe, 400,800);
-     hhframe->AddFrame(vframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    vframe->MapWindow();
-    }
-
-
-    signals[idac]=new ctbSignal(vframe,idac,myDet);
-    signals[idac]->Connect("ToggledSignalOutput(Int_t)","ctbSignals",this,"ToggledOutReg(Int_t)");
-    signals[idac]->Connect("ToggledSignalDbitList(Int_t)","ctbSignals",this,"ToggledDbitList(Int_t)");
-    signals[idac]->Connect("ToggledSignalPlot(Int_t)","ctbSignals",this,"ToggledPlot(Int_t)");
- 
-    vframe->AddFrame(signals[idac],new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    signals[idac]->MapWindow();
-
-
-  }
-
-  hframe=new TGHorizontalFrame(vframe, 800,50);
-  vframe->AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
-  TGLabel *label= new TGLabel(hframe, "IO Control Register: ");
-   hframe->AddFrame(label,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   label->MapWindow();
-   label->SetTextJustify(kTextLeft);
-
-
-   eIOCntrlRegister = new TGNumberEntry(hframe, 0, 16,999, TGNumberFormat::kNESHex,
-                                               TGNumberFormat::kNEANonNegative, 
-                                               TGNumberFormat::kNELNoLimits);
-
-  hframe->AddFrame(eIOCntrlRegister,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 1, 1, 1, 1));
-   eIOCntrlRegister->MapWindow();
-   eIOCntrlRegister->Resize(150,30);
-
-
-
-
-    hframe=new TGHorizontalFrame(vframe, 800,50);
-    vframe->AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    hframe->MapWindow();
-   
-
-   label= new TGLabel(hframe, "DBit Offset: ");
-   hframe->AddFrame(label,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   label->MapWindow();
-   label->SetTextJustify(kTextLeft);
-
-
-   eDbitOffset = new TGNumberEntry(hframe, 0, 9,999, TGNumberFormat::kNESInteger,
-                                               TGNumberFormat::kNEANonNegative, 
-                                               TGNumberFormat::kNELNoLimits);
-
-  hframe->AddFrame(eDbitOffset,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 1, 1, 1, 1));
-   eDbitOffset->MapWindow();
-   eDbitOffset->Resize(150,30);
-   
- 
-  TGTextEntry *e= eDbitOffset->TGNumberEntry::GetNumberEntry();
-    e->Connect("ReturnPressed()","ctbSignals",this,"setDbitOffset()");
-
-    e->Connect("ValueSet(Long_t)","ctbSignals",this,"setDbitOffset(Long_t)");
-}
-
-
-
-
-int ctbSignals::setSignalAlias(string line) {
-
-  int is=-1, plot=0, col=-1;
-  char tit[100];
-  int narg=sscanf(line.c_str(),"BIT%d %s %d %d",&is,tit,&plot,&col);
-  if (narg<2)
-    return -1;
-  if (is>=0 && is<NIOSIGNALS) {
-    signals[is]->setSignalAlias(tit,plot,col);
-  }
-  return is;
-
-}
-
-string ctbSignals::getSignalAlias() {
-
-  ostringstream oss;
-  for (int is=0; is<NIOSIGNALS; is++)
-    oss << signals[is]->getSignalAlias() << endl;
-
-
-    return oss.str();
-
-}
-
-
-void ctbSignals::update() {
-  try {
-
-    Long64_t oreg = static_cast<Long64_t>(myDet->getPatternIOControl().tsquash("Different values"));
-    cout << hex << oreg << dec << endl;
-
-    for (int idac=0; idac<NIOSIGNALS; idac++) {
-      signals[idac]->setOutput(oreg);
-    }
-
-  } CATCH_DISPLAY ("Could not get patternIOcontrol.", "ctbSignals::update")
-
-  if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
-    // enable all
-    for (int is=0; is<64; is++) {
-      signals[is]->setDbitList(1);
-    } 
-    eDbitOffset->SetNumber(0);
-  } 
-  
-  // ctb
-  else {
-    try {
-
-      auto dbitlist = myDet->getRxDbitList().tsquash("Different values");
-      // enable all
-      if (dbitlist.empty()) {
-        for (int is=0; is<64; is++) {
-          signals[is]->setDbitList(1);
-        } 
-      }
-      else {
-        // disable all
-        for (int is=0; is<64; is++) {
-          signals[is]->setDbitList(0);
-        }
-        // enable selected
-        for (const auto &value : dbitlist)  {
-          signals[value]->setDbitList(1);
-        }
-      }
-
-    } CATCH_DISPLAY ("Could not get receiver dbit list.", "ctbSignals::update")
-
-    try {
-      auto val = myDet->getRxDbitOffset().tsquash("Different values");
-      eDbitOffset->SetNumber(val);
-    } CATCH_DISPLAY ("Could not get receiver dbit offset.", "ctbSignals::update")
-  }
-}
-
-
-string ctbSignals::getSignalParameters() {
-
-  try {
-
-    auto val = myDet->getPatternIOControl().tsquash("Different values");
-    ostringstream line;
-    line <<  "patioctrl " << hex << val << dec << endl;
-    return line.str();
-
-  } CATCH_DISPLAY ("Could not get patternIOcontrol.", "ctbSignals::getSignalParameters")
-
-  return ("");
-}
-
-void ctbSignals::ToggledOutReg(Int_t mask) {
-  try {
-
-    Long64_t oreg = static_cast<Long64_t>(myDet->getPatternIOControl().tsquash("Different values"));
-    Long64_t m=((Long64_t)1)<<mask;
-    cout << dec << sizeof(Long64_t) << " " << mask << " " << hex << m << " ioreg " << oreg;
-
-    if (signals[mask]->isOutput()) {
-      cout <<  " or " << m ;
-      oreg|=m;
-    } else {
-      cout <<  " not " << ~m ;
-      oreg&=~m;
-    }
-    cout <<  " after " << oreg << endl;
-
-    myDet->setPatternIOControl(static_cast<uint64_t>(oreg));
-    oreg = static_cast<Long64_t>(myDet->getPatternIOControl().tsquash("Different values"));
-    cout << dec << sizeof(Long64_t) << " " << mask << " " << hex << m << " ioreg " << oreg << endl;
-
-    eIOCntrlRegister->SetText(to_string(oreg).c_str());
-
-  } CATCH_DISPLAY ("Could not get/set patternIOcontrol.", "ctbSignals::ToggledOutReg")
-
-}
-
-
-
-void ctbSignals::ToggledDbitList(Int_t mask){
-  try {
-
-    auto dbitlist = myDet->getRxDbitList().tsquash("Different values");
-
-    // anyway all enabled
-    if ((dbitlist.empty()) && (signals[mask]->isDbitList())) {
-      ;
-    } 
-    // set the dbitlist
-    else  {
-      std::vector <int> new_dbitlist;
-      for (int is=0; is<64; is++) {
-        if (signals[is]->isDbitList()){ 
-          new_dbitlist.push_back(is);
-          cout << is << " " << new_dbitlist.size() - 1 << endl;
-        }
-      }
-      if (new_dbitlist.size() > 64) 
-        new_dbitlist.clear();
-      myDet->setRxDbitList(new_dbitlist);
-      // get list again
-      dbitlist = myDet->getRxDbitList().tsquash("Different values");
-    }
-    
-    // enable all
-    if (dbitlist.empty()) {
-      for (int is=0; is<64; is++) {
-        signals[is]->setDbitList(1);
-      } 
-    }
-    else {
-      // disable all
-      for (int is=0; is<64; is++) {
-        signals[is]->setDbitList(0);
-      }
-      // enable selected
-      for (const auto &value : dbitlist)  {
-        signals[value]->setDbitList(1);
-      }
-    }
-
-  } CATCH_DISPLAY ("Could not get/set receiver dbit list.", "ctbSignals::ToggledDbitList")
-}
-
-
-
-
-void ctbSignals::ToggledPlot(Int_t b) {
-  
-  Emit("ToggledSignalPlot(Int_t)", b);
-
-}
-
-
-void ctbSignals::ToggledSignalPlot(Int_t b) {
-  
-  Emit("ToggledSignalPlot(Int_t)", b);
-
-}
-
-
-Pixel_t ctbSignals::getColor(int i){
-  if (i>=0 && i<NSIGNALS) 
-    return signals[i]->getColor();
-  return static_cast<Pixel_t>(-1);
-}
-
-int ctbSignals::getPlot(int i){
-  if (i>=0 && i<NSIGNALS) 
-    return signals[i]->isPlot();
-  return -1;
-};
-
-void ctbSignals::setDbitOffset(Long_t) {
-  setDbitOffset();
-}
-
-void ctbSignals::setDbitOffset(){
-  try {
-    myDet->setRxDbitOffset(eDbitOffset->GetNumber());
-  } CATCH_DISPLAY ("Could not set receiver dbit offset.", "ctbSignals::setDbitOffset")
-}

ctbGui/ctbSignals.h

@@ -1,123 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef CTBSIGNALS_H
-#define CTBSIGNALS_H
-#include  <TGFrame.h>
-
-
-#define NSIGNALS 64
-
-#define NIOSIGNALS 64 //for moench board was 52
-
-
-#define ADCLATCH 63
-#define DIGSIGLATCH 62
-
-
-
-
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TGCheckButton;
-class TH1I;
-class  TGTextButton;
-class TGColorSelect;
-
-
-
-class TGNumberEntry;
-namespace sls
-{
-   class Detector;
-};
-class ctbSignal;
-
-#include <string>
-using namespace std;
-
-class ctbSignal : public TGHorizontalFrame {
-
-  // RQ_OBJECT("ctbSignal")
-
-private:
-
-   TGLabel *sLabel;
-   TGCheckButton *sOutput;
-   TGCheckButton *sDbitList;
-   TGCheckButton *sPlot;
-   TGLabel *sValue;
-   TGNumberEntry *sEntry;
-   TGColorSelect *fColorSel;
-
-   sls::Detector *myDet;
-   Int_t id;
-
-   TH1I *hsig;
-
-public:
-
-   ctbSignal(TGFrame *page, int i, sls::Detector *det);
-   int setSignalAlias(char *tit, int plot, int col);
-   string getSignalAlias();
-
-   TH1I *getPlot() {return hsig;};
-   int setOutput(Long64_t);
-   int fixOutput(int);
-   int setDbitList(Long64_t);
-
-   void ToggledOutput(Bool_t); 
-   void ToggledDbitList(Bool_t); 
-   void ToggledPlot(Bool_t); 
-   void ColorChanged(Pixel_t); 
-
-   int isDbitList();
-   int isOutput();
-   int isPlot();
-   Pixel_t getColor();
-
-
-   void ToggledSignalOutput(Int_t); //*SIGNAL*
-   void ToggledSignalDbitList(Int_t); //*SIGNAL*
-   void ToggledSignalPlot(Int_t); //*SIGNAL*
-
-
-
-   ClassDef(ctbSignal,0)
-};
-
-class ctbSignals : public TGGroupFrame {
-private:
- 
-  ctbSignal *signals[NSIGNALS];
-
-  TGNumberEntry *eIOCntrlRegister;
-  TGNumberEntry *eDbitOffset;
-
-  sls::Detector *myDet;
-
-public:
-  ctbSignals(TGVerticalFrame *page, sls::Detector *det);
-   int setSignalAlias(string line);
-   string getSignalAlias();
-
-   int getPlot(int);
-   Pixel_t getColor(int);
-   
-   void update();
-   // void saveParameters();
-   string getSignalParameters();
-
-   //void setDbitList(Int_t);
-   void setDbitOffset(Long_t);
-   void setDbitOffset();
-
-   void ToggledOutReg(Int_t);
-   void ToggledDbitList(Int_t);
-   void ToggledPlot(Int_t);
-   void ToggledSignalPlot(Int_t); //*SIGNAL*
-
-   ClassDef(ctbSignals,0)
-};
-
-#endif

ctbGui/ctbSlowAdcs.cpp

@@ -1,184 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-
-#include <TGTextEntry.h>
-#include <TGLabel.h>
-#include <TGNumberEntry.h>
-#include <TGButton.h>
-
-#include "ctbSlowAdcs.h"
-#include "ctbDefs.h"
-#include "sls/Detector.h"
-#include "sls/sls_detector_defs.h"
-
-using namespace std;
-
-
-
-
-ctbSlowAdc::ctbSlowAdc(TGGroupFrame *page, int idac, sls::Detector *det) : TGHorizontalFrame(page, 800,50) , id(idac), myDet(det) {
-
-
-    TGHorizontalFrame *hframe=this;
-
-    page->AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    MapWindow();
-
-    char tit[100];
-    
-
-   sprintf(tit, "SENSE %d:",idac-1000);
-
-   dacsLabel= new TGLabel(hframe, tit);// new TGLabel(hframe, tit);
-   
- 
-
-   hframe->AddFrame(dacsLabel,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-   dacsLabel->MapWindow();
-   dacsLabel->SetTextJustify(kTextLeft);
-
-  
-
-
-   sprintf(tit, "xxx");
-   dacsValue= new TGLabel(hframe, tit);
-   hframe->AddFrame( dacsValue,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-   dacsValue->MapWindow();
-   dacsValue->SetTextJustify(kTextLeft);
-
-   
-
-   TGTextButton *b= new TGTextButton(hframe, "Update");
-   hframe->AddFrame( b,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-   b->MapWindow();
-   b->SetTextJustify(kTextLeft);
-
-   b->Connect("Clicked()","ctbSlowAdc",this,"getValue()");
-}
-
-
-
-int ctbSlowAdc::setLabel(char *tit) {
-  if(tit)
-    dacsLabel->SetText(tit);
-
-  return id;
-
-}
-
-string ctbSlowAdc::getLabel() {
-  ostringstream line;
-  line << dacsLabel->GetText() <<  endl;
-
-   //  line << "DAC" << dec << id << " " <<  dacsUnit->IsOn() << endl;
-
-  return line.str();
-}
-
-
-
-int ctbSlowAdc::getValue() {
-  try {
-    std::string s;
-
-    // temp
-    if (id == static_cast<int>(slsDetectorDefs::SLOW_ADC_TEMP)) {
-
-      int val = myDet->getTemperature(static_cast<slsDetectorDefs::dacIndex>(id)).tsquash("Different values");
-      cout << "slow adc temp" << " " << val << endl;
-
-      s = to_string(val) + " " + to_string(0x00b0) + "C";//<2F>C
-      dacsValue->SetText(s.c_str());
-      return val;
-    } 
-    
-    // mv
-    else {
-
-      int val = myDet->getSlowADC(static_cast<slsDetectorDefs::dacIndex>(id)).tsquash("Different values");
-      cout << "slow adc " << id << " " << val << endl;
-      
-      s = to_string(val) + " mV"; 
-      dacsValue->SetText(s.c_str());
-      return val;
-    }
-
-  } CATCH_DISPLAY ("Could not get slow dac " + to_string(id) + ".", "ctbSlowAdc::getValue")
-
-  return -1;
-}
-
-
-
-
-
-
-
-ctbSlowAdcs::ctbSlowAdcs(TGVerticalFrame *page, sls::Detector *det)   : TGGroupFrame(page,"Sense",kVerticalFrame) , myDet(det){
-
-  SetTitlePos(TGGroupFrame::kLeft);
-  page->AddFrame(this,new TGLayoutHints( kLHintsTop | kLHintsExpandX , 10,10,10,10));
-  MapWindow();
-  
-  // cout << "window mapped " << endl;
-
- 
-  for (int idac=0; idac<NSLOWADCS + 1; idac++) {
-
-     adcs[idac]=new ctbSlowAdc(this, idac+1000, myDet);
-
-  }
-  adcs[NSLOWADCS]->setLabel((char*)"Temperature"); 
-}
-
-
-
-
-int ctbSlowAdcs::setSlowAdcAlias(string line) {
-
-  int is=-1, mv=0;
-  char tit[100];
-  int narg=sscanf(line.c_str(),"SENSE%d %s %d",&is,tit,&mv);
-  if (narg<2)
-    return -1;
-  if (is>=0 && is<NSLOWADCS) 
-    adcs[is]->setLabel(tit);
-  return is;
-
-}
-
-string ctbSlowAdcs::getSlowAdcAlias() {
-
-  ostringstream line;
-
-  for (int i=0; i<NSLOWADCS; i++)
-    line << adcs[i]->getLabel() << endl;
-  return line.str();
-}
-
-
-
-
-string ctbSlowAdcs::getAdcParameters() {
-
-  ostringstream line;
-
-  for (int i=0; i<NSLOWADCS; i++) {
-    //line << "dacs:" << i << " " << dacs[i]->getValue << endl;
-    line << "adc:" << i << " " << adcs[i]->getValue() << endl;
-  }    
-  line << "adc:-1" << adcs[NSLOWADCS]->getValue() << endl;
-  return line.str();
-}
-
-
-
-void  ctbSlowAdcs::update() {
-  for (int idac=0; idac<NSLOWADCS+1; idac++) {
-    adcs[idac]->getValue();
-  }
-}

ctbGui/ctbSlowAdcs.h

@@ -1,80 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-#ifndef CTBSLOWADCS_H
-#define CTBSLOWADCS_H
-#include  <TGFrame.h>
-
-
-//#define NDACS 16
-#define NSLOWADCS 8
-
-
-
-
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TGCheckButton;
-class TGTextButton;
-
-
-
-namespace sls
-{
-   class Detector;
-};
-
-#include <string>
-using namespace std;
-
-class ctbSlowAdc : public TGHorizontalFrame {
-
-
- protected:
-  // TGLabel *dacsLabel;
-  // TGNumberEntry *dacsEntry;
-  // TGCheckButton *dacsUnit;
-   TGLabel *dacsLabel;
-   TGLabel *dacsValue;
-   int id;
-
-   sls::Detector* myDet;
- public:
-   ctbSlowAdc(TGGroupFrame*, int , sls::Detector*);
-   int getValue();
-   
-   int setLabel(char *tit);
-   string getLabel();
-
-
-
-   ClassDef(ctbSlowAdc,0)
-};
-
-
-class ctbSlowAdcs : public TGGroupFrame {
-private:
-  
-
-
-   ctbSlowAdc *adcs[NSLOWADCS+1];
-
-   sls::Detector* myDet;
-
-public:
-   ctbSlowAdcs(TGVerticalFrame *page, sls::Detector*);
-
-   int setSlowAdcAlias(string line);
-   // int setDacAlias(string line);
-   string getSlowAdcAlias();
-   string getAdcParameters();
-
-   void update();
-
-   ClassDef(ctbSlowAdcs,0)
-};
-
-#endif
-

docs/CMakeLists.txt

@@ -58,6 +58,12 @@ set(SPHINX_SOURCE_FILES
   src/udpheader.rst
   src/udpconfig.rst
   src/udpdetspec.rst
+  src/fileformat.rst
+  src/slsreceiverheaderformat.rst
+  src/masterfileattributes.rst
+  src/binaryfileformat.rst
+  src/hdf5fileformat.rst
+  src/zmqjsonheaderformat.rst
 )
 
 foreach(filename ${SPHINX_SOURCE_FILES})

docs/Doxyfile.in

@@ -890,7 +890,7 @@ EXCLUDE_SYMLINKS       = NO
 # Note that the wildcards are matched against the file with absolute path, so to
 # exclude all test directories for example use the pattern */test/*
 
-EXCLUDE_PATTERNS       = */docs/* */tests/* */python/* */manual */slsDetectorServers/* */libs/* */integrationTests *README* */slsDetectorGui/* */ctbGui/* */slsDetectorCalibration/*
+EXCLUDE_PATTERNS       = */docs/* */tests/* */python/* */manual */slsDetectorServers/* */libs/* */integrationTests *README* */slsDetectorGui/* */ctbGui/* */slsDetectorCalibration/* *TobiSchluter*
 
 # The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names
 # (namespaces, classes, functions, etc.) that should be excluded from the

docs/conf.py.in

@@ -63,4 +63,4 @@ html_static_path = ['static']
 
 
 def setup(app):
-    app.add_stylesheet('css/extra.css')  # may also be an URL
+    app.add_css_file('css/extra.css')  # may also be an URL

docs/src/binaryfileformat.rst

@@ -0,0 +1,438 @@
+Binary File Format
+====================
+
+This is the default file format that can be configured using command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
+
+    .. code-block:: bash
+
+        sls_detector_put fformat binary
+
+
+Master File
+--------------
+
+* File Name: [fpath]/[fname]_master_[findex].json :ref:`Details here<file name format>`
+
+* It is in json format and created for every acquisition.
+
+* It contains :ref:`attributes<master file attributes>` relevant to the acquisition. This can vary with detector type shown in :ref:`master json file examples <json master file examples>` here.
+
+* It shows the :ref:`**SLS Receiver Header** <sls receiver header format>` format used in data files.
+
+* Enabled/disabled using command `fmaster <commandline.html#term-fmaster-0-1>`_. 
+
+
+Data File
+----------
+
+* File Name: [fpath]/[fname]_dx_fy_[findex].raw :ref:`Details here<file name format>`
+
+* It store multiple frames sequentially, with total number of frames determined by `rx_framesperfile <commandline.html#term-rx_framesperfile-n_frames>`_ parameter.
+
+* Each frame includes a :ref:`**sls_receiver_header** <sls receiver header format>` structure, followed by the actual frame data.
+
+
+
+.. _json master file examples:
+
+JSON Master File Examples
+---------------------------------------------------
+
+Eiger
+^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 15:46:30 2024",
+        "Detector Type": "Eiger",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 2,
+            "y": 1
+        },
+        "Image Size in bytes": 262144,
+        "Pixels": {
+            "x": 512,
+            "y": 256
+        },
+        "Max Frames Per File": 10000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Dynamic Range": 16,
+        "Ten Giga": 0,
+        "Exptime": "1s",
+        "Period": "1s",
+        "Threshold Energy": -1,
+        "Sub Exptime": "2.62144ms",
+        "Sub Period": "2.62144ms",
+        "Quad": 0,
+        "Number of rows": 256,
+        "Rate Corrections": "[0]",
+        "Frames in File": 1,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+
+
+Jungfrau
+^^^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 13:03:53 2024",
+        "Detector Type": "Jungfrau",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 1048576,
+        "Pixels": {
+            "x": 1024,
+            "y": 512
+        },
+        "Max Frames Per File": 10000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1000,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Exptime": "10us",
+        "Period": "2ms",
+        "Number of UDP Interfaces": 1,
+        "Number of rows": 512,
+        "Frames in File": 10,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+
+Gotthard2
+^^^^^^^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 14:18:17 2024",
+        "Detector Type": "Gotthard2",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 2560,
+        "Pixels": {
+            "x": 1280,
+            "y": 1
+        },
+        "Max Frames Per File": 20000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 10,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Exptime": "0ns",
+        "Period": "0ns",
+        "Burst Mode": "burst_internal",
+        "Frames in File": 10,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+Mythen3
+^^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 14:39:14 2024",
+        "Detector Type": "Mythen3",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 15360,
+        "Pixels": {
+            "x": 3840,
+            "y": 1
+        },
+        "Max Frames Per File": 10000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Dynamic Range": 32,
+        "Ten Giga": 1,
+        "Period": "2ms",
+        "Counter Mask": "0x7",
+        "Exptime1": "0.1s",
+        "Exptime2": "0.1s",
+        "Exptime3": "0.1s",
+        "GateDelay1": "0ns",
+        "GateDelay2": "0ns",
+        "GateDelay3": "0ns",
+        "Gates": 1,
+        "Threshold Energies": "[-1, -1, -1]",
+        "Frames in File": 1,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+
+Moench
+^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 14:41:32 2024",
+        "Detector Type": "Moench",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 320000,
+        "Pixels": {
+            "x": 400,
+            "y": 400
+        },
+        "Max Frames Per File": 100000,
+        "Frame Discard Policy": "discardpartial",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Exptime": "10us",
+        "Period": "2ms",
+        "Number of UDP Interfaces": 1,
+        "Number of rows": 400,
+        "Frames in File": 1,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+Gotthard I
+^^^^^^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 15:16:19 2024",
+        "Detector Type": "Gotthard",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 2560,
+        "Pixels": {
+            "x": 1280,
+            "y": 1
+        },
+        "Max Frames Per File": 20000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Exptime": "1.00001ms",
+        "Period": "1s",
+        "Detector Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295
+        },
+        "Frames in File": 1,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+Chip Test Board
+^^^^^^^^^^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 15:32:59 2024",
+        "Detector Type": "ChipTestBoard",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 48018,
+        "Pixels": {
+            "x": 3,
+            "y": 1
+        },
+        "Max Frames Per File": 20000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Exptime": "0ns",
+        "Period": "0.18s",
+        "Ten Giga": 0,
+        "ADC Mask": "0x2202",
+        "Analog Flag": 1,
+        "Analog Samples": 8003,
+        "Digital Flag": 0,
+        "Digital Samples": 1000,
+        "Dbit Offset": 0,
+        "Dbit Bitset": 0,
+        "Transceiver Mask": "0x3",
+        "Transceiver Flag": 0,
+        "Transceiver Samples": 1,
+        "Frames in File": 1,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }

docs/src/commandline.rst

@@ -4,11 +4,54 @@ Command line interface
 Usage
 -------------
 
-Commands can be used either with sls_detector_get or sls_detector_put
+The syntax is *'[detector index]-[module index]:[command]'*, where the indices are by default '0', when not specified.
+
+Module index
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Modules are indexed based on their order in the hostname command. They are used to configure a specific module within a detector and are followed by a ':' in syntax.
+
+    .. code-block::
+
+        # Applies to all modules of detector 0
+        sls_detector_put exptime 5s
+
+        # Applies to only the 4th module
+        sls_detector_put 3:exptime 5s
+
+
+Detector index
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+This index is useful when configuring multiple detectors from a single host. Each detector uses a unique shared memory identified by a detector index, derived again from the hostname command. It is followed by a '-'. 
+
+    .. code-block::
+
+        # For detector with index 2 in shared memory
+        sls_detector_put 2-hostname bchip133+bchip123+bchip456
+        
+        # Without '-', the detector index defaults to 0
+        sls_detector_put hostname bchip133+bchip123+bchip456
+
+        # Accessing all modules with detector index 2
+        sls_detector_put 2-exptime
+
+        # Starting acquisition only for detector with index 2
+        sls_detector_put 2-start
+
+        # Applies only to the 2nd detector, 4th module
+        sls_detector_put 1-3:exptime 5s
+
+
+Command Execution
+^^^^^^^^^^^^^^^^^^^^^^^
+Commands can be executed using:
+
+*   **sls_detector_put**: setting values
+*   **sls_detector_get**: getting values
+*   **sls_detector**: automatically infers based on the number of arguments.
+*   **sls_detector_help**: gets help on the specific command
+*   **sls_detector_acquire**: initiates acquisition with the detector. This command blocks until the entire acquisition process is completed.
 
-.. code-block::
 
-    sls_detector_get vrf
 
 Help
 --------
@@ -25,6 +68,19 @@ Help
     sls_detector_get -h fpath
     sls_detector_help fpath
 
+    # list of deprecated commands
+    list deprecated
+
+
+Autocompletion
+---------------
+
+bash_autocomplete.sh or zsh_autocomplete.sh must be sourced from the main package folder to enable auto completion of commands and arguments for the command line on that shell.
+
+.. code-block::
+
+    source bash_autocomplete.sh
+  
 
 Commands
 -----------
@@ -32,14 +88,14 @@ Commands
 .. include:: ../commands.rst
 
 
-Depreciated commands
+Deprecated commands
 ------------------------
 
 .. note ::
 	All the dac commands are preceded with the **dac** command. Use command **daclist** to get correct list of dac command arguments for current detector.
 
-.. csv-table:: Depreciated commands
-   :file: ../depreciated.csv
+.. csv-table:: Deprecated commands
+   :file: ../deprecated.csv
    :widths: 35, 35
    :header-rows: 1
 

docs/src/consuming.rst

@@ -19,7 +19,7 @@ A minimal CMakeLists.txt could look like this:
 .. code-block:: cmake
 
     project(myDetectorIntegration)
-    cmake_minimum_required(VERSION 3.12)
+    cmake_minimum_required(VERSION 3.14)
     add_subdirectory(slsDetectorPackage)
 
     #Add your executable
@@ -43,7 +43,7 @@ should be needed, otherwise specify cmake prefix path.
 
 .. code-block:: cmake 
 
-    cmake_minimum_required(VERSION 3.12)
+    cmake_minimum_required(VERSION 3.14)
     project(myintegration)
 
     find_package(slsDetectorPackage 5.0 REQUIRED)

docs/src/dependencies.rst

@@ -13,24 +13,36 @@ To use the basic building blocks, meaning sls_detector_get/put and
 the shared libraries these are needed: 
 
  * Linux, preferably recent kernel (currently no cross platform support)
- * CMake > 3.12 
+ * CMake >= 3.14 
  * C++11 compatible compiler. (We test with gcc and clang)
- * ZeroMQ version 4
+
+-----------------------
+Python bindings
+-----------------------
+
+ * Python >= 3.8
+ * pybind11 2.13.6 (packaged in libs)
+
+.. note ::  
+
+    Refer :ref:`pybind11 notes. <pybind for different slsDetectorPackage versions>`  
+
+-----------------------
+ZeroMQ
+-----------------------
+
+ * Zeromq 4.3.4 (packaged in libs)
+
+.. note ::   
+
+    Refer :ref:`zeromq notes. <zeromq for different slsDetectorPackage versions>` 
 
 -----------------------
 GUI
 -----------------------
 
  * Qt 5.9
- * Qwt 6.1.5 (packaged in libs/)
-
------------------------
-Python bindings
------------------------
-
- * Python > 3.6
- * pybind11 (packaged in libs/)
-
+ * Qwt 6.1.5 (packaged in libs)
 
 -----------------------
 Moench executables
@@ -55,3 +67,5 @@ Packaged in libs/
  * catch2 (unit testing)
  * rapidjson (streaming from receiver)
  * pybind11 (python bindings)  
+ * qwt (gui plotting)
+ * libzmq (streaming to/from receiver)

docs/src/detector.rst

@@ -1,15 +1,17 @@
 Detector
 ==============================================
 
-The sls::Detector is the new public API to control 
+The sls::Detector is the public API to control 
 detectors from C++. This API is also used internally
 for the Python bindings and the command line interface. 
-If a receiver has been configured this is also controlled
+If a receiver has been configured, this is also controlled
 through this class.
 
 Most, if not all, functions are called in parallel
 and the return value is a thin std::vector wrapper 
-containing results from all modules. (Result<T>)
+containing results from all modules. (:ref:`Result class<Result Class>`)
+
+Here are some :ref:`examples <Cplusplus Api Examples>` on how to use the API.
 
 .. doxygenclass:: sls::Detector
    :members:

docs/src/examples.rst

@@ -1,3 +1,4 @@
+.. _Cplusplus Api Examples:
 
 
 
@@ -53,8 +54,8 @@ then set up the detector.
 
     jungfrauDetectorServer_virtual
 
-This launches a virtual Jungfrau detector server. As default is uses port 1952 and 1953
-for communication over TCP. Most commands go on 1952 and only stop and status on 1953. 
+This launches a virtual Jungfrau detector server. As default it uses port 1952 and 1953
+for communication over TCP. Most commands go on 1952 and only a few such as stop and status on 1953. 
 
 **Run example to configure**
 
@@ -90,7 +91,10 @@ std::vector.
     sls::Result<int> res1{1, 1, 1};
     std::cout << "res1: " << res1 << '\n';
     res1.squash();
+    # return -1 if different
     res1.squash(-1);
+    # throw exception with custom message if different
+    res1.tsquash("Values are different);
 
 
 

docs/src/fileformat.rst

@@ -0,0 +1,62 @@
+File format
+================================
+
+If `fwrite <commandline.html#term-fwrite-0-1>`_ is enabled, the receiver will write data to files. 
+
+Number of Files
+----------------
+
+Every acquisition will create a master file and data files. 
+
+An acquisition can have multiple data files for a single frame. The number of files is determined by the number of UDP ports per module and the number of modules.
+
+    * Every modules has its own receiver process. Every receiver process can have 1 or 2 UDP ports.
+    * Each UDP port will create its own file. Therefore, each receiver can write 1 or 2 files.
+    * So, for example a detector with 4 modules with 2 UDP ports each will create a total of 8 files with file names containing UDP port index **'_d0'** to **'_d7'**.
+
+A new file containing **'_f[file_index]'** in file name is also created when reaching the maximum frames per file. Configured using `rx_framesperfile <commandline.html#term-rx_framesperfile-n_frames>`_.
+
+.. _file name format:
+
+Naming
+-------
+| Master File Name: [fpath]/[fname]_master_[findex].[ext]
+
+
+| Data File Name: [fpath]/[fname]_dx_fy_[findex].[ext] 
+
+   * fpath: file path set using command `fpath <commandline.html#term-fpath-path>`_. Default: '/'
+   * fname: file name prefix using command `fname <commandline.html#term-fname-name>`_. Default: "run"
+   * findex: acquisition index using command `findex <commandline.html#term-findex-n_value>`_. Automatically incremented for every acquisition with `sls_detector_acquire <commandline.html#term-acquire>`_ (if `fwrite <commandline.html#term-fwrite-0-1>`_ enabled).
+   * x: unique udp port index. New file per UDP port.
+   * y: file index. New file created after reaching max frames per file.
+   * ext: file extension. Default: "raw"(data file) or "json"(master file)
+
+
+Some file name examples:
+
+    .. code-block:: bash
+
+        # first file
+        path-to-file/run_d0_f0_0.raw
+
+        # first file for second UDP port
+        path-to-file/run_d1_f0_0.raw
+
+        # second file after reaching max frames in first file
+        path-to-file/run_d0_f1_0.raw
+        
+        # second acquisition, first file
+        path-to-file/run_d0_f0_1.raw
+
+
+Formats
+--------
+
+There are 2 file formats supported by the receiver:
+
+    * Binary - extension .json (master file) or .raw (data files)
+    * HDF5 - extension .h5
+
+The default is binary. HDF5 can be enabled by compiling the package with HDF5 option enabled. The file format is set using the command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
+

docs/src/firmware.rst

@@ -98,7 +98,7 @@ Upgrade
 
     * 6.1.2 server has a fix for seamless fpga programming
 
-    * We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command 'updatedetectorserver' or 'copydetectorserver'.
+    * We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command `updatedetectorserver <commandline.html#term-updatedetectorserver-server_name-with-full-path>`_.
 
     * Then use command 'programfpga' to only update firmware or use command 'update' to update firmware and server to the latest release.
 
@@ -120,7 +120,7 @@ Program from console
         # removes old server from respawn, sets up new lnked server to respawn
         # programs fpga, reboots
 
-        # v5.0.0 - 6.0.0 (copies server from tftp folder of the pc)
+        #  older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
         sls_detector_put update jungfrauDetectorServervxxx pcxxx xx.pof
 
         # v6.1.1 - present (copies server from the full path provided)
@@ -190,7 +190,7 @@ Program from console
         # removes old server from respawn, sets up new lnked server to respawn
         # programs fpga, reboots
 
-        # v5.0.0 - 6.0.0 (copies server from tftp folder of the pc)
+        #  older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
         sls_detector_put update mythen3DetectorServervxxx pcxxx xxx.rbf
 
         # v6.1.1 - present (copies server from the full path provided)
@@ -224,7 +224,7 @@ Program from console
         # removes old server from respawn, sets up new lnked server to respawn
         # programs fpga, reboots
 
-        # v5.0.0 - 6.0.0 (copies server from tftp folder of the pc)
+        #  older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
         sls_detector_put update gotthard2DetectorServervxxx pcxxx xxx.rbf
 
         # v6.1.1 - present (copies server from the full path provided)
@@ -257,7 +257,7 @@ Upgrade
 
     * 6.1.2 server has a fix for seamless fpga programming
 
-    * We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command 'updatedetectorserver' or 'copydetectorserver'.
+    * We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command `updatedetectorserver <commandline.html#term-updatedetectorserver-server_name-with-full-path>`_.
 
     * Then use command 'programfpga' to only update firmware or use command 'update' to update firmware and server to the latest release.
 
@@ -275,7 +275,7 @@ Program from console
         # removes old server from respawn, sets up new lnked server to respawn
         # programs fpga, reboots
 
-        # v5.0.0 - 6.0.0 (copies server from tftp folder of the pc)
+        #  older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
         sls_detector_put update moenchDetectorServervxxx pcxxx xx.pof
 
         # v6.1.1 - present (copies server from the full path provided)
@@ -310,7 +310,7 @@ Program from console
         # removes old server from respawn, sets up new lnked server to respawn
         # programs fpga, reboots
 
-        # v5.0.0 - 6.0.0 (copies server from tftp folder of the pc)
+        #  older versions: v5.0.0 - 6.0.0 using tftp from tftp folder of pc
         sls_detector_put update ctbDetectorServervxxx pcxxx xx.pof
 
         # v6.1.1 - present (copies server from the full path provided)

docs/src/gendoc.cpp

@@ -11,7 +11,7 @@
 #include <string>
 #include <vector>
 
-#include "CmdProxy.h"
+#include "Caller.h"
 #include "sls/Detector.h"
 #include "sls/sls_detector_defs.h"
 
@@ -37,8 +37,8 @@ int main() {
 
     std::cout << "Generating command line documentation!\n";
 
-    sls::CmdProxy proxy(nullptr);
-    auto commands = proxy.GetProxyCommands();
+    sls::Caller caller(nullptr);
+    auto commands = caller.getAllCommands();
 
     std::ofstream fs("commands.rst");
     fs << ".. glossary::\n";
@@ -46,7 +46,7 @@ int main() {
     for (const auto &cmd : commands) {
         std::ostringstream os;
         std::cout << cmd << '\n';
-        proxy.Call(cmd, {}, -1, slsDetectorDefs::HELP_ACTION, os);
+        caller.call(cmd, {}, -1, slsDetectorDefs::HELP_ACTION, os);
 
         auto tmp = os.str().erase(0, cmd.size());
         auto usage = tmp.substr(0, tmp.find_first_of('\n'));
@@ -55,9 +55,9 @@ int main() {
         fs << '\t' << cmd << usage << help << "\n";
     }
 
-    std::ofstream fs2("depreciated.csv");
+    std::ofstream fs2("deprecated.csv");
     fs2 << "Old, New\n";
-    auto cmds = proxy.GetDepreciatedCommands();
+    auto cmds = caller.GetDeprecatedCommands();
     for (auto it : cmds) {
         fs2 << it.first << ", " << it.second << '\n';
     }

docs/src/hdf5fileformat.rst

@@ -0,0 +1,89 @@
+
+
+HDF5 File Format
+================================
+
+Compilation
+-------------
+
+#. Compile the package with HDF5 option enabled
+
+    #. Using cmk script: ./cmk.sh -hj9 -d [path of hdf5 dir] (-d is optional and for custom installation folder)
+
+    #. Enable using cmake option **-DSLS_USE_HDF5=ON** and **-DCMAKE_INSTALL_PREFIX=/path/to/custom/hdf/installation** (optional).
+
+
+Setup
+-------
+
+#. Start Receiver process
+
+#. Load config file
+
+#. Set file format using command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
+
+    .. code-block:: bash
+
+        sls_detector_put fformat hdf5
+
+
+Master File
+-------------
+
+* File Name: [fpath]/[fname]_master_[findex].h5 :ref:`Details here<file name format>`
+
+* It contains  :ref:`attributes<master file attributes>` relevant to the acquisition. This can vary with detector type.
+
+.. code-block:: text
+
+    /                                               # Root level
+    |---> entry                                     # entry group
+    |    |---> data                                 # data group
+    |         |---> column                          # dataset of each sls_receiver_header member
+    |         |---> data
+    |         |---> detector header version
+    |         |---> detector specific 1
+    |         |---> detector specific 2
+    |         |---> detector specific 3
+    |         |---> detector specific 4
+    |         |---> detector type
+    |         |---> exp length or sub exposure time
+    |         |---> frame number
+    |         |---> mod id
+    |         |---> packets caught
+    |         |---> packets caught bit mask
+    |         |---> row
+    |         |---> timestamp
+    |    |---> instrument                           # instrument group
+    |         |---> beam                            # beam group
+    |         |---> detector                        # detector group
+    |              |---> Master File Attribute 1    # dataset of each master file attribute
+    |              |---> Master File Attribute 2
+    |              |---> Master File Attribute 3
+    |              |---> Master File Attribute ..
+    |    |---> sample                               # sample group
+
+
+If more than 1 data file per frame:
+    * The dataset of each :ref:`**SLS Receiver Header** <sls receiver header format>` member is a virtual dataset.
+    * **data** dataset is a virtual dataset.
+
+
+More details regarding master file attributes can be found :ref:`here<master file attributes>`.
+
+Data File
+-----------
+
+* File Name: [fpath]/[fname]_dx_fy_[findex].h5 :ref:`Details here<file name format>`
+
+
+Virtual Data File
+------------------
+
+* File Name: [fpath]/[fname]_virtual_[findex].h5 :ref:`Details here<file name format>`
+
+* For multiple modules, a virtual file linking data from all the modules is created. The individual files are expected to be present.
+
+* It is linked in the master file.
+
+

docs/src/index.rst

@@ -8,11 +8,11 @@ Welcome to slsDetectorPackage's documentation!
 
 .. note :: 
 
-    This is the documentation for the latest development version of slsDetectorPackage
-    For documentation on current and previous releases visit the official page: https://www.psi.ch/en/detectors/documentation
+    This is the documentation for the latest development version of slsDetectorPackage.
+    For further documentation, visit the official page: https://www.psi.ch/en/detectors/documentation
 
 .. toctree::
-    :maxdepth: 1
+    :maxdepth: 3
     :caption: Installation:
 
     installation
@@ -39,7 +39,7 @@ Welcome to slsDetectorPackage's documentation!
 
 .. toctree::
     :caption: Command line
-    :maxdepth: 2
+    :maxdepth: 1
 
     commandline  
     quick_start_guide
@@ -82,6 +82,22 @@ Welcome to slsDetectorPackage's documentation!
     receivers
     slsreceiver
 
+.. toctree::
+    :caption: Receiver Files
+    :maxdepth: 3
+
+    fileformat
+    slsreceiverheaderformat
+    masterfileattributes
+    binaryfileformat
+    hdf5fileformat
+
+.. toctree::
+    :caption: Receiver ZMQ Stream
+    :maxdepth: 2
+
+    zmqjsonheaderformat
+
 .. toctree::
     :caption: Troubleshooting
 

docs/src/installation.rst

@@ -1,8 +1,3 @@
-.. warning ::
-    
-    Before building from source make sure that you have the 
-    :doc:`dependencies <../dependencies>` installed. If installing using conda, conda will 
-    manage the dependencies. Avoid also installing packages with pip. 
 
 
 .. _Installation:
@@ -11,18 +6,32 @@
 Installation
 ===============
 
+One can either install pre-built binaries using conda or build from source.
+
+.. warning ::
+    
+    Before building from source make sure that you have the 
+    :doc:`dependencies <../dependencies>` installed. If installing using conda, conda will 
+    manage the dependencies. Avoid also installing packages with pip. 
+   
+
+
 Install binaries using conda
--------------------------------
+----------------------------------
 
 Conda is not only useful to manage python environments but can also
 be used as a user space package manager. Dates in the tag (for eg. 2020.07.23.dev0) 
 are from the developer branch. Please use released tags for stability.
 
-We have three different packages available:
-
-    * **slsdetlib** shared libraries and command line utilities 
-    * **slsdetgui** GUI
-    * **slsdet** Python bindings
+We have four different packages available:
+    ==============     =============================================
+    Package             Description
+    ==============     =============================================
+    slsdetlib           shared libraries and command line utilities 
+    slsdetgui           GUI
+    slsdet              Python bindings
+    moenchzmq           moench
+    ==============     =============================================
 
 .. code-block:: bash
 
@@ -38,7 +47,7 @@ We have three different packages available:
 
     #ready to use
     sls_detector_get exptime
-    etc ...
+    ...
 
 
 .. code-block:: bash
@@ -50,13 +59,14 @@ We have three different packages available:
     conda search slsdet
     # gui
     conda search slsdetgui
+    # moench
+    conda search moenchzmq
 
 
 
 
 Build from source
--------------------
-
+----------------------
 
 1. Download Source Code from github
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
@@ -65,23 +75,9 @@ Build from source
 
     git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch 6.1.1
 
+.. note ::   
 
-| **Pybind for Python**
-| v7.0.0+:
-|   pybind11 packaged into 'libs/pybind'. No longer a submodule. No need for "recursive" or "submodule update".
-| 
-| Older versions:
-|   pybind11 is a submodule. Must be cloned using "recursive" and updated when switching between versions using the following commands.
-
-.. code-block:: bash
-    
-    # clone using recursive to get pybind11 submodule
-    git clone --recursive https://github.com/slsdetectorgroup/slsDetectorPackage.git
-
-    # update submodule when switching between releases
-    cd slsDetectorPackage
-    git submodule update --init
-   
+      For v6.x.x of slsDetectorPackage and older, refer :ref:`pybind11 notes on cloning. <pybind for different slsDetectorPackage versions>`  
 
 .. _build from source using cmake:
 
@@ -90,8 +86,10 @@ Build from source
 2. Build from Source
 ^^^^^^^^^^^^^^^^^^^^^^^^^^
 
+One can either build using cmake or use the in-built cmk.sh script.
+
 Build using CMake
-^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 .. code-block:: bash
 
@@ -118,33 +116,36 @@ Instead of the cmake command, one can use ccmake to get a list of options to con
     ccmake ..
  
     # choose the options
-    # first press [c] - configure
+    # first press [c] - configure (until you see [g])
     # then press [g] - generate
 
 
-
-===============================     ===========================================
+===============================     ===============================
 Example cmake options               Comment
-===============================     ===========================================
+===============================     ===============================
 -DSLS_USE_PYTHON=ON                 Python
--DPython_FIND_VIRTUALENV=ONLY       Python from only the conda environment 
--DZeroMQ_HINT=/usr/lib64            Use system zmq instead
+-DPython_FIND_VIRTUALENV=ONLY       Python from the conda env 
 -DSLS_USE_GUI=ON                    GUI
-===============================     ===========================================
+-DSLS_USE_HDF5=ON                   HDF5
+-DSLS_USE_SIMULATOR=ON              Simulator
+===============================     ===============================
 
+.. note ::   
+
+    For v7.x.x of slsDetectorPackage and older, refer :ref:`zeromq notes for cmake option to hint library location. <zeromq for different slsDetectorPackage versions>` 
 
 
 Build using in-built cmk.sh script
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 
 .. code-block:: bash
 
     The binaries are generated in slsDetectorPackage/build/bin directory.
 
-    Usage: ./cmk.sh [-b] [-c] [-d <HDF5 directory>] [e] [g] [-h] [i] [-j <Number of threads>] 
-    [-k <CMake command>] [-l <Install directory>] [m] [n] [-p] [-q <Zmq hint directory>] 
-    [r] [s] [t] [u] [z]  
+    Usage: $0 [-b] [-c] [-d <HDF5 directory>] [-e] [-g] [-h] [-i] 
+    [-j <Number of threads>] [-k <CMake command>] [-l <Install directory>] 
+    [-m] [-n] [-p] [-r] [-s] [-t] [-u] [-z]  
     -[no option]: only make
     -b: Builds/Rebuilds CMake files normal mode
     -c: Clean
@@ -159,7 +160,6 @@ Build using in-built cmk.sh script
     -m: Manuals
     -n: Manuals without compiling doxygen (only rst)
     -p: Builds/Rebuilds Python API
-    -q: Zmq hint directory
     -r: Build/Rebuilds only receiver
     -s: Simulator
     -t: Build/Rebuilds only text client
@@ -176,13 +176,17 @@ Build using in-built cmk.sh script
     # new build, python and compile in parallel:
     ./cmk.sh -cbpj5
 
-    #To use the system zmq (/usr/lib64) instead
-    ./cmk.sh -cbj5 -q /usr/lib64
+    #For rebuilding only certain sections
+    ./cmk.sh -tg #only text client and gui
+    ./cmk.sh -r #only receiver
 
+.. note ::   
+
+    For v7.x.x of slsDetectorPackage and older, refer :ref:`zeromq notes for cmk script option to hint library location. <zeromq for different slsDetectorPackage versions>` 
 
 
 Build on old distributions
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 If your linux distribution doesn't come with a C++11 compiler (gcc>4.8) then 
 it's possible to install a newer gcc using conda and build the slsDetectorPackage
@@ -191,7 +195,7 @@ using this compiler
 .. code-block:: bash
 
     #Create an environment with the dependencies
-    conda create -n myenv gxx_linux-64 cmake zmq
+    conda create -n myenv gxx_linux-64 cmake
     conda activate myenv
 
     # outside slsDetecorPackage folder
@@ -200,11 +204,17 @@ using this compiler
     make -j12
 
 
+.. note ::   
+
+    For v7.x.x of slsDetectorPackage and older, refer :ref:`zeromq notes for dependencies for conda. <zeromq for different slsDetectorPackage versions>` 
+
+
 
 Build slsDetectorGui (Qt5)
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 1. Using pre-built binary on conda
+
     .. code-block:: bash
 
         conda create -n myenv slsdetgui=7.0.0
@@ -212,13 +222,22 @@ Build slsDetectorGui (Qt5)
 
 
 2. Using system installation on RHEL7
+
     .. code-block:: bash
 
         yum install qt5-qtbase-devel.x86_64
         yum install qt5-qtsvg-devel.x86_64 
 
+3. Using system installation on RHEL8
+
+    .. code-block:: bash
+
+        yum install qt5-qtbase-devel.x86_64
+        yum install qt5-qtsvg-devel.x86_64 
+        yum install expat-devel.x86_64
+
+4. Using conda
 
-3. Using conda
     .. code-block:: bash
 
         #Add channels for dependencies and our library
@@ -228,9 +247,9 @@ Build slsDetectorGui (Qt5)
 
         # create environment to compile
         # on rhel7
-        conda create -n slsgui zeromq gxx_linux-64 gxx_linux-64 mesa-libgl-devel-cos6-x86_64 qt
+        conda create -n slsgui gxx_linux-64 gxx_linux-64 mesa-libgl-devel-cos6-x86_64 qt
         # on fedora or newer systems
-        conda create -n slsgui zeromq qt
+        conda create -n slsgui qt
 
         # when using conda compilers, would also need libgl, but no need for it on fedora unless maybe using it with ROOT
 
@@ -246,11 +265,14 @@ Build slsDetectorGui (Qt5)
         cd slsDetectorPackage
         ./cmk.sh -cbgj9
 
+.. note ::   
+
+    For v7.x.x of slsDetectorPackage and older, refer :ref:`zeromq notes for dependencies for conda. <zeromq for different slsDetectorPackage versions>` 
 
 
 
 Build this documentation
-^^^^^^^^^^^^^^^^^^^^^^^^
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 The documentation for the slsDetectorPackage is build using a combination 
 of Doxygen, Sphinx and Breathe. The easiest way to install the dependencies
@@ -258,7 +280,7 @@ is to use conda
 
 .. code-block:: bash
 
-    conda create -n myenv python sphinx_rtd_theme breathe
+    conda create -n myenv python=3.12 sphinx sphinx_rtd_theme breathe doxygen numpy
 
 
 .. code-block:: bash
@@ -270,3 +292,53 @@ is to use conda
 
     make docs # generate API docs and build Sphinx RST
     make rst # rst only, saves time in case the API did not change
+
+
+Pybind and Zeromq
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+.. _pybind for different slsDetectorPackage versions:
+
+
+| **Pybind11 for Python**
+| v8.0.0+: 
+|   pybind11 is built
+|   * by default from tar file in repo (libs/pybind/v2.1x.0.tar.gz) 
+|   * or use advanced option SLS_FETCH_PYBIND11_FROM_GITHUB [`link <https://github.com/pybind/pybind11>`__].
+|      * v9.0.0+: pybind11 (v2.13.6)
+|      * v8.x.x : pybind11 (v2.11.0)
+|
+| v7.x.x:
+|   pybind11 packaged into 'libs/pybind'. No longer a submodule. No need for "recursive" or "submodule update".
+| 
+| Older versions:
+|   pybind11 is a submodule. Must be cloned using "recursive" and updated when switching between versions using the following commands.
+
+.. code-block:: bash
+
+    # Note: Only for v6.x.x versions and older
+
+    # clone using recursive to get pybind11 submodule
+    git clone --recursive https://github.com/slsdetectorgroup/slsDetectorPackage.git
+
+    # update submodule when switching between releases
+    cd slsDetectorPackage
+    git submodule update --init
+
+
+.. _zeromq for different slsDetectorPackage versions:
+
+
+
+| **Zeromq**
+| v8.0.0+:
+|   zeromq (v4.3.4) is built 
+|   * by default from tar file in repo (libs/libzmq/libzmq-4.3.4.tar.gz) 
+|   * or use advanced option SLS_FETCH_ZMQ_FROM_GITHUB [`link <https://github.com/zeromq/libzmq.git>`__].
+|
+| v7.x.x and older:
+|   zeromq-devel must be installed and one can hint its location using
+|   * cmake option:'-DZeroMQ_HINT=/usr/lib64' or 
+|   * option '-q' in cmk.sh script: : ./cmk.sh -cbj5 -q /usr/lib64
+|   * 'zeromq' dependency added when installing using conda
+

docs/src/masterfileattributes.rst

@@ -0,0 +1,409 @@
+
+.. _master file attributes:
+
+Master File Attributes
+=======================
+
+These attributes are the same in binary and HDF5 file, but vary depending on detector type.
+
+
+Eiger
+^^^^^
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Dynamic Range         | Bits per pixel                                  |
+   +-----------------------+-------------------------------------------------+
+   | Ten Giga              | 10GbE enable for data                           |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Threshold Energy      | Threshold energy                                |
+   +-----------------------+-------------------------------------------------+
+   | Sub Exptime           | Sub exposure time in 32 bit mode                |
+   +-----------------------+-------------------------------------------------+
+   | Sub Period            | Sub period between frames in 32 bit mode        |
+   +-----------------------+-------------------------------------------------+
+   | Quad                  | Quad enable (hardware)                          |
+   +-----------------------+-------------------------------------------------+
+   | Number of rows        | Number of rows enabled for readout              |
+   +-----------------------+-------------------------------------------------+
+   | Rate Corrections      | Rate Corrections                                |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+
+Jungfrau
+^^^^^^^^
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Number of UDP         | Number of UDP Interfaces enabled per module     |
+   | Interfaces            |                                                 |
+   +-----------------------+-------------------------------------------------+
+   | Number of rows        | Number of rows enabled for readout              |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+Gotthard II
+^^^^^^^^^^^^
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Burst Mode            | Burst mode of detector                          |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+Mythen3
+^^^^^^^
+
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Dynamic Range         | Bits per pixel                                  |
+   +-----------------------+-------------------------------------------------+
+   | Ten Giga              | 10GbE enable for data                           |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Counter Mask          | Mask of counters enabled                        |
+   +-----------------------+-------------------------------------------------+
+   | Exptime1              | Exposure time of counter 1                      |
+   +-----------------------+-------------------------------------------------+
+   | Exptime2              | Exposure time of counter 2                      |
+   +-----------------------+-------------------------------------------------+
+   | Exptime3              | Exposure time of counter 3                      |
+   +-----------------------+-------------------------------------------------+
+   | GateDelay1            | Gate delay of counter 1                         |
+   +-----------------------+-------------------------------------------------+
+   | GateDelay2            | Gate delay of counter 2                         |
+   +-----------------------+-------------------------------------------------+
+   | GateDelay3            | Gate delay of counter 3                         |
+   +-----------------------+-------------------------------------------------+
+   | Gates                 | Number of gates                                 |
+   +-----------------------+-------------------------------------------------+
+   | Threshold energies    | Threshold energy of all 3 counters              |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+
+Moench
+^^^^^^
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Number of UDP         | Number of UDP Interfaces enabled per module     |
+   | Interfaces            |                                                 |
+   +-----------------------+-------------------------------------------------+
+   | Number of rows        | Number of rows enabled for readout              |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+Gotthard I
+^^^^^^^^^^^
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Detector Roi          | Roi in detector restricted to an ADC.           |
+   |                       | Includes xmax                                   |
+   +-----------------------+-------------------------------------------------+
+   | Burst Mode            | Burst mode of detector                          |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+Chip Test Board
+^^^^^^^^^^^^^^^
+
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Ten Giga              | Ten giga enable                                 |
+   +-----------------------+-------------------------------------------------+
+   | ADC Mask              | Mask of channels enabled in ADC                 |
+   +-----------------------+-------------------------------------------------+
+   | Analog Flag           | Analog readout enable                           |
+   +-----------------------+-------------------------------------------------+
+   | Analog Samples        | Number of analog samples                        |
+   +-----------------------+-------------------------------------------------+
+   | Digital Flag          | Digital readout enable                          |
+   +-----------------------+-------------------------------------------------+
+   | Digital Samples       | Number of digital samples                       |
+   +-----------------------+-------------------------------------------------+
+   | Dbit Offset           | Digital offset of valid data in bytes           |
+   +-----------------------+-------------------------------------------------+
+   | Dbit Bitset           | Digital 64 bit mask of bits enabled in receiver |
+   +-----------------------+-------------------------------------------------+
+   | Transceiver Mask      | Mask of channels enabled in Transceiver         |
+   +-----------------------+-------------------------------------------------+
+   | Transceiver Flag      | Transceiver readout enable                      |
+   +-----------------------+-------------------------------------------------+
+   | Transceiver Samples   | Number of transceiver samples                   |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+

docs/src/pygettingstarted.rst

@@ -6,7 +6,7 @@ Getting Started
 Which Python?  
 --------------------
 
-We require at least Python 3.6 and strongly recommended that you don't use the system
+We require at least Python 3.8 and strongly recommended that you don't use the system
 Python installation. The examples in this documentation uses `conda
 <https://docs.conda.io/en/latest/miniconda.html>`_ since it provides good support
 also for non Python packages but there are also other alternatives like, pyenv. 

docs/src/quick_start_guide.rst

@@ -109,12 +109,14 @@ For Multiple Modules
         # connects to mulitple modules
         hostname bchipxxx+bchipyyy+
 
-        # connects to receivers at ports 2012 and 2014
-        rx_hostname mpc1922:2012+mpc1922:2013+
+        # tcp port increases for each module (multi detector command)
+        rx_tcpport 2012
 
-        # sets differernt destination udp ports
-        0:udp_dstport 50012
-        1:udp_dstport 50014
+        # connects to receivers at ports 2012 and 2014
+        rx_hostname mpc1922
+
+        # increasing udp ports (multi detector command)
+        udp_dstport 50012
 
         # source udp ips must be same subnet at destintaion udp ips
         0:udp_srcip 192.168.1.112
@@ -126,6 +128,10 @@ For Multiple Modules
         # set file path
         fpath /tmp
 
+.. note ::   
+    The **hostname** and **detsize** command in a multi module system can affect the row and column values in the udp/zmq header. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on. 
+
+    
 Gui
 ----
 

docs/src/result.rst

@@ -1,3 +1,5 @@
+.. _Result Class:
+
 Result
 ==============================================
 

docs/src/servers.rst

@@ -39,13 +39,13 @@ Arguments
 
 
 .. _Automatic start servers:
+
 Automatic start 
 ------------------
 
 One can start the on-board detector server automatically upon powering on the board.
 
-#. Create a soft link to the binary on board 
-   :
+#. Create a soft link to the binary on board:
       .. code-block:: bash
       
          ln -sf someDetectorServervx.x.x someDetectorServer
@@ -87,8 +87,7 @@ One can start the on-board detector server automatically upon powering on the bo
          /root/xxxDetectorServer >> /dev/null &
 
 
-#. Sync, reboot and verify
-   :
+#. Sync, reboot and verify:
       .. code-block:: bash
       
          sync

docs/src/slsreceiver.rst

@@ -53,7 +53,12 @@ Client Commands
         # multi modules with custom ports
         rx_hostname xxx:1955+xxx:1956+
         
-        # multi modules with custom ports on same rxr pc
+        
+        # multi modules using increasing tcp ports when using multi detector command
+        rx_tcpport 1955
+        rx_hostname xxx
+
+        # or specify multi modules with custom ports on same rxr pc
         0:rx_tcpport 1954
         1:rx_tcpport 1955
         2:rx_tcpport 1956
@@ -86,245 +91,6 @@ Client Commands
         sls_detector_get -h rx_framescaught
 
 
-ZMQ: Json Header Format
-------------------------
-
-
-**Change in field names from slsDetectorPackage v6.x.x to v7.0.0**
-
-* detSpec1 <- bunchId
-* detSpec2 <- reserved
-* detSpec3 <- debug
-* detSpec4 <- roundRNumber
-
-
-**Format**
-
-    .. code-block:: bash 
-
-        {
-            "jsonversion": unsigned int,
-            "bitmode": unsigned int,
-            "fileIndex": unsigned long int,
-            "detshape": [
-                unsigned int,
-                unsigned int
-            ],
-            "shape": [
-                unsigned int,
-                unsigned int
-            ],
-            "size": unsigned int,
-            "acqIndex": unsigned long int,
-            "frameIndex": unsigned long int,
-            "progress": double,
-            "fname": string,
-            "data": unsigned int,
-            "completeImage": unsigned int,
-
-            "frameNumber": unsigned long long int,
-            "expLength": unsigned int,
-            "packetNumber": unsigned int,
-            "detSpec1": unsigned long int,
-            "timestamp": unsigned long int,
-            "modId": unsigned int,
-            "row": unsigned int,
-            "column": unsigned int,
-            "detSpec2": unsigned int,
-            "detSpec3": unsigned int,
-            "detSpec4": unsigned int,
-            "detType": unsigned int,
-            "version": unsigned int,
-            
-            "flipRows": unsigned int,
-            "quad": unsigned int,
-            "addJsonHeader": {
-                string : string
-            }
-        }
-
-   +--------------+----------------------------------------------+
-   |   Field      |       Description                            |
-   +--------------+----------------------------------------------+
-   | jsonversion  | Version of the json header.                  |
-   |              | Value at 4 for v6.x.x and v7.x.x             |
-   +--------------+----------------------------------------------+
-   | bitmode      | Bits per pixel [4|8|16|32]                   |
-   +--------------+----------------------------------------------+
-   | fileIndex    | Current file acquisition index               |
-   +--------------+----------------------------------------------+
-   | detshape     | Geometry of the entire detector              |
-   +--------------+----------------------------------------------+
-   | shape        | Geometry of the current port streamed out    |
-   +--------------+----------------------------------------------+
-   | size         | Size of image of current port in bytesout    |
-   +--------------+----------------------------------------------+
-   | acqIndex     | Frame number from the detector (redundant)   |
-   +--------------+----------------------------------------------+
-   | frameIndex   | Frame number of current acquisition          |
-   |              | (Starting at 0)                              |
-   +--------------+----------------------------------------------+
-   | progress     | Progress of current acquisition in %         |
-   +--------------+----------------------------------------------+
-   | fname        | Current file name                            |
-   +--------------+----------------------------------------------+
-   | data         | 1 if there is data following                 |
-   |              | 0 if dummy header                            |
-   +--------------+----------------------------------------------+
-   | completeImage| 1 if no missing packets for this frame       |
-   |              | in this port, else 0                         |
-   +--------------+----------------------------------------------+
-   | frameNumber  | Frame number                                 |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | expLength    | subframe number (32 bit eiger)               |
-   |              | or real time exposure time in 100ns (others) |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | packetNumber | Number of packets caught for that frame      |
-   +--------------+----------------------------------------------+
-   | detSpec1     | See :ref:`here<Detector Specific Fields>`    |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | timestamp    | Timestamp with 10 MHz clock                  |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | modId        | Module Id                                    |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | row          | Row number in detector                       |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | column       | Column number in detector                    |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | detSpec2     | See :ref:`here<Detector Specific Fields>`    |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | detSpec3     | See :ref:`here<Detector Specific Fields>`    |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | detSpec4     | See :ref:`here<Detector Specific Fields>`    |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | detType      | Detector type enum                           |
-   | detSpec3     | See :ref:`Detector enum<Detector Enum>`      |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | version      | Detector header version. At 2                |
-   |              | [From detector udp header]                   |
-   +--------------+----------------------------------------------+
-   | flipRows     | 1 if rows should be flipped.                 |
-   |              | Usually for Eiger bottom.                    |
-   +--------------+----------------------------------------------+
-   | quad         | 1 if its an Eiger quad.                      |
-   +--------------+----------------------------------------------+
-   | addJsonHeader| Optional custom parameters that is required  |
-   |              | for processing code.                         |
-   +--------------+----------------------------------------------+
-
-
-SLS Receiver Header Format
---------------------------
-
-It is 112 bytes and consists of:
-    * 48 bytes of the SLS Detector Header (described in :ref:`the current detector header <detector udp header>`)
-    * 64 bytes of packet mask
-
-.. code-block:: cpp 
-    
-    typedef struct {
-        uint64_t frameNumber;
-        uint32_t expLength;
-        uint32_t packetNumber;
-        uint64_t detSpec1;
-        uint64_t timestamp;
-        uint16_t modId;
-        uint16_t row;
-        uint16_t column;
-        uint16_t detSpec2;
-        uint32_t detSpec3;
-        uint16_t detSpec4;
-        uint8_t detType;
-        uint8_t version;
-    } sls_detector_header;
-
-    struct sls_receiver_header {
-        sls_detector_header detHeader; /**< is the detector header */
-        sls_bitset packetsMask;        /**< is the packets caught bit mask */
-    };
-
-
-.. note :: 
-
-    | The packetNumber in the SLS Receiver Header will be modified to number of packets caught by receiver for that frame. For eg. Jungfrau will have 128 packets per frame. If it is less, then this is a partial frame due to missing packets.
-    
-    | Furthermore, the bit mask will specify which packets have been received.
-
-
-
-
-File format
---------------
-
-Master file is in json format.
-
-The file name format is [fpath]/[fname]_dx_fy_[findex].raw, where x is module index and y is file index. **fname** is file name prefix and by default "run". **fpath** is '/' by default.
-
-
-Each acquisition will have an increasing acquisition index or findex (if file write enabled). This can be retrieved by using **findex** command. 
-
-
-Each acquisition can have multiple files (the file index number **y**), with **rx_framesperfile** being the maximum number of frames per file. The default varies for each detector type.
-
-
-Some file name examples:
-
-    .. code-block:: bash
-
-        # first file
-        path-to-file/run_d0_f0_0.raw
-
-        # second file after reaching max frames in first file
-        path-to-file/run_d0_f1_0.raw
-        
-        # second acquisition, first file
-        path-to-file/run_d0_f0_1.raw
-
-
-Each acquisition will create a master file that can be enabled/disabled using **fmaster**. This should have parameters relevant to the acquisition.
-
-
-**Binary file format**
-
-This is the default file format. 
-
-
-Each data file will consist of frames, each consisting of slsReceiver Header followed by data for 1 frame.
-
-
-Master file is of ASCII format and will also include the format of the slsReceiver Header.
-
-
-**HDF5 file formats**
-
-#. Compile the package with HDF5 option enabled
-
-    #. Using cmk script: ./cmk.sh -hj9 -d [path of hdf5 dir]
-
-    #. Enable using cmake **-DCMAKE_INSTALL_PREFIX=/path/to/hdf/installation** and **-DSLS_USE_HDF5=ON**
-
-#. Start Receiver process
-
-#. Load config file
-
-#. Set file format from client or in config file
-    .. code-block:: bash
-
-        sls_detector_put fformat hdf5
-
-
-| For multiple, modules, a virtual file linking all the modules is created. Both the data files and virtual files are linked in the master file.
 
 
 Performance 

docs/src/slsreceiverheaderformat.rst

@@ -0,0 +1,40 @@
+
+.. _sls receiver header format:
+
+SLS Receiver Header Format
+====================================================
+
+It is 112 bytes and consists of:
+    * 48 bytes of the SLS Detector Header 
+    * 64 bytes of packet mask
+
+.. code-block:: cpp 
+    
+    typedef struct {
+        uint64_t frameNumber;
+        uint32_t expLength;
+        uint32_t packetNumber;
+        uint64_t detSpec1;
+        uint64_t timestamp;
+        uint16_t modId;
+        uint16_t row;
+        uint16_t column;
+        uint16_t detSpec2;
+        uint32_t detSpec3;
+        uint16_t detSpec4;
+        uint8_t detType;
+        uint8_t version;
+    } sls_detector_header;
+
+    struct sls_receiver_header {
+        sls_detector_header detHeader; /**< is the detector header */
+        sls_bitset packetsMask;        /**< is the packets caught bit mask */
+    };
+
+
+
+| **sls_detector_header** (described in :ref:`the current detector header <detector udp header>`)
+    
+| The **packetNumber** from detector UDP header is modified in **sls_receiver_header** to number of packets caught by receiver for that frame and the bit mask for each packet caught is the **packetsMask**. The packetsMask is a total of 512 bits due to the largest number of packets per frame among our detectors.
+
+| For eg. Jungfrau has 128 packets per frame. If **packetNumeber** is 128, then this frame is complete. If it is 127 or less, it is a partial frame due to missing packets. If one would still like to use it, the **packetsMask** will specify which packet has been received or is missing.

docs/src/troubleshooting.rst

@@ -22,6 +22,8 @@ Common
        * Check transeiver and fibers are compatible (all MMF 850nm or all SMF 1030nm)
        * Check fiber
        * Check fiber polarity (if short range, unplug the link anywhere, and look at the light/dark pattern: dark has to mate with light)
+    * For Jungfrau, check if the blue sfp light is blinking rapidly (even when it is not sending data). If so, most likely the link is down and something is wrong with the board. If it connected to a switch, then you do not see it with the ethtool command if link is down. One option is to connect it directly to a pc to see if link is down.
+    * With nc, try "nc -u -p 50001 -l" in receiving pc, and from another pc try "echo hallo | nc -u 10.1.2.172 50001" to send something to the recieving pc interface to see if the link is up and see if the other nc console receives the hallo.
 
 #. Detector is not acquiring (Not Eiger)
     * Take an acquisition with many images and using the following steps instead of acquire:
@@ -47,11 +49,20 @@ Common
     * Ensure that the interfaces (on NIC and the switch) used in receiver pc have MTU 9000 (jumbo frames) enabled.
 
 
-#. Check if 'rx_frames' counter in 'ifconfig' do not increment for interface.
+#. Check if 'rx packets' counter in 'ifconfig' do not increment for interface.
     * If no, check switch configuration if present. Port counters of switch can also help to identify problem.
     * If yes, but receiver software does not see it:
 
         * Check no firewall (eg. firewalld) is present or add rules
+
+                .. code-block:: bash
+                    
+                    # Stop and disable firewall
+                    service firewalld stop
+                    systemctl disable firewalld
+                    # Check status
+                    service firewalld status
+
         * Check that selinux is disabled ( or add rules)
         
 #. Source UDP IP in config file (Not Eiger)
@@ -92,6 +103,9 @@ Common
             sls_detector_put rx_arping 1
 
 
+#. Only the slaves get no data 
+    * Check trigger cabling and trigger configuration
+    * When you cannot stop Jungfrau slaves in sync mode, refer to :ref:`Cannot stop slaves<Jungfrau Troubleshooting Sync Slaves Cannot Stop>`.
 
 .. _Receiver PC Tuning:
 
@@ -380,6 +394,14 @@ Missing first frame or next frame after a delay
 Connect the data link from the Module directly to receiver pc or to a private network.
 
 
+Mythen3
+--------
+
+Detector status is waiting even in auto timing mode
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Check if the control board or the flat band cable is connected properly. If not, connect them properly and try again.
+
+
 Jungfrau
 ---------
 
@@ -421,3 +443,20 @@ Cannot get multi module data
     * Comment out this line in the config file: powerchip 1
     * Powering on the chip increases the power consumption by a considerable amount. If commenting out this line aids in getting data (strange data due to powered off chip), then it could be the power supply current limit. Fix it (possibly to 8A current limit) and uncomment the powerchip line back in config file.
 
+
+
+.. _Jungfrau Troubleshooting Sync Slaves Cannot Stop:
+
+Cannot stop slaves in sync mode
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+#. If cabling is accessible, ensure termination board and flatband cable between the masters and the slaves are connnected properly. Then try to stop.
+#. If cabling is inaccessible, unsync first so that the slaves can get the stop directly from the client using the command. Then, don't use sync mode until the cabling is fixed.
+
+    .. code-block:: bash
+        
+        # unsync, slaves command will fail as it is still in waiting state
+        sls_detector_put sync 0
+
+        # stop should now be successful as master does not determine the stop anymore
+        sls_detector_put stop

docs/src/udpheader.rst

@@ -3,7 +3,7 @@
 Format
 =======
 
-The UDP data format for the packets consist of a common header for all detectors, followed by the data for that one packet.
+The UDP data format for the packets consist of a common header of 48 bytes for all detectors, followed by the data for that one packet.
 
 
 Current Version
@@ -11,6 +11,25 @@ Current Version
 
 **v2.0 (slsDetectorPackage v7.0.0+)**
 
+.. code-block:: cpp 
+    
+    typedef struct {
+        uint64_t frameNumber;
+        uint32_t expLength;
+        uint32_t packetNumber;
+        uint64_t detSpec1;
+        uint64_t timestamp;
+        uint16_t modId;
+        uint16_t row;
+        uint16_t column;
+        uint16_t detSpec2;
+        uint32_t detSpec3;
+        uint16_t detSpec4;
+        uint8_t detType;
+        uint8_t version;
+    } sls_detector_header;
+
+
 .. table:: <---------------------------------------------------- 8 bytes per row --------------------------------------------->
     :align: center
     :widths: 30,30,30,15,15
@@ -54,15 +73,17 @@ Description
 
 * **modId**: module ID picked up from det_id_[detector type].txt on the detector cpu.
 
-* **row**: row position of the module in the detector system. It is calculated by the order of the module in hostname command, as well as the detsize command.
+* **row**: row position of the module in the detector system. It is calculated by the order of the module in hostname command, as well as the detsize command. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on.
 
-* **column**: column position of the module in the detector system.  It is calculated by the order of the module in hostname command, as well as the detsize command.
+* **column**: column position of the module in the detector system.  It is calculated by the order of the module in hostname command, as well as the detsize command. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on.
 
 * **detType**: detector type from enum of detectorType in the package.
 
 * **version**: current version of the detector header (0x2).
 
 
+.. _detector enum:
+
 Detector Enum
 --------------
 

docs/src/virtualserver.rst

@@ -86,7 +86,8 @@ For a Single Module (With Options)
         udp_dstport 50012
 
         # source udp ips must be same subnet at destintaion udp ips
-        udp_srcip 192.168.1.112
+        # takes the same ip as hostname
+        udp_srcip auto
 
         # destination udp ip picked up from rx_hostname (if auto)
         udp_dstip auto
@@ -101,12 +102,14 @@ For Multiple Modules
         virtual 2 1912
         # or hostname localhost:1912+localhost:1914+
 
-        # connects to receivers at ports 2012 and 2014
-        rx_hostname mpc1922:2012+mpc1922:2013+
+        # increasing receiver tcp ports (multi detector command)
+        rx_tcpport 2012
 
-        # sets differernt destination udp ports
-        0:udp_dstport 50012
-        1:udp_dstport 50014
+        # connects to reciever at port 2012 and 2013
+        rx_hostname mpc1922
+
+        # sets increasing destination udp ports
+        udp_dstport 50012
 
         # source udp ips must be same subnet at destintaion udp ips
         0:udp_srcip 192.168.1.112

docs/src/zmqjsonheaderformat.rst

@@ -0,0 +1,137 @@
+ZMQ: Json Header Format
+========================
+
+
+**Change in field names from slsDetectorPackage v6.x.x to v7.0.0**
+
+* detSpec1 <- bunchId
+* detSpec2 <- reserved
+* detSpec3 <- debug
+* detSpec4 <- roundRNumber
+
+
+**Format**
+
+    .. code-block:: bash 
+
+        {
+            "jsonversion": unsigned int,
+            "bitmode": unsigned int,
+            "fileIndex": unsigned long int,
+            "detshape": [
+                unsigned int,
+                unsigned int
+            ],
+            "shape": [
+                unsigned int,
+                unsigned int
+            ],
+            "size": unsigned int,
+            "acqIndex": unsigned long int,
+            "frameIndex": unsigned long int,
+            "progress": double,
+            "fname": string,
+            "data": unsigned int,
+            "completeImage": unsigned int,
+
+            "frameNumber": unsigned long long int,
+            "expLength": unsigned int,
+            "packetNumber": unsigned int,
+            "detSpec1": unsigned long int,
+            "timestamp": unsigned long int,
+            "modId": unsigned int,
+            "row": unsigned int,
+            "column": unsigned int,
+            "detSpec2": unsigned int,
+            "detSpec3": unsigned int,
+            "detSpec4": unsigned int,
+            "detType": unsigned int,
+            "version": unsigned int,
+            
+            "flipRows": unsigned int,
+            "quad": unsigned int,
+            "addJsonHeader": {
+                string : string
+            }
+        }
+
+   +--------------+----------------------------------------------+
+   |   Field      |       Description                            |
+   +--------------+----------------------------------------------+
+   | jsonversion  | Version of the json header.                  |
+   |              | Value at 4 for v6.x.x and v7.x.x             |
+   +--------------+----------------------------------------------+
+   | bitmode      | Bits per pixel [4|8|16|32]                   |
+   +--------------+----------------------------------------------+
+   | fileIndex    | Current file acquisition index               |
+   +--------------+----------------------------------------------+
+   | detshape     | Geometry of the entire detector              |
+   +--------------+----------------------------------------------+
+   | shape        | Geometry of the current port streamed out    |
+   +--------------+----------------------------------------------+
+   | size         | Size of image of current port in bytesout    |
+   +--------------+----------------------------------------------+
+   | acqIndex     | Frame number from the detector (redundant)   |
+   +--------------+----------------------------------------------+
+   | frameIndex   | Frame number of current acquisition          |
+   |              | (Starting at 0)                              |
+   +--------------+----------------------------------------------+
+   | progress     | Progress of current acquisition in %         |
+   +--------------+----------------------------------------------+
+   | fname        | Current file name                            |
+   +--------------+----------------------------------------------+
+   | data         | 1 if there is data following                 |
+   |              | 0 if dummy header                            |
+   +--------------+----------------------------------------------+
+   | completeImage| 1 if no missing packets for this frame       |
+   |              | in this port, else 0                         |
+   +--------------+----------------------------------------------+
+   | frameNumber  | Frame number                                 |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | expLength    | subframe number (32 bit eiger)               |
+   |              | or real time exposure time in 100ns (others) |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | packetNumber | Number of packets caught for that frame      |
+   +--------------+----------------------------------------------+
+   | detSpec1     | See :ref:`here<Detector Specific Fields>`    |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | timestamp    | Timestamp with 10 MHz clock                  |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | modId        | Module Id                                    |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | row          | Row number in detector                       |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | column       | Column number in detector                    |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | detSpec2     | See :ref:`here<Detector Specific Fields>`    |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | detSpec3     | See :ref:`here<Detector Specific Fields>`    |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | detSpec4     | See :ref:`here<Detector Specific Fields>`    |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | detType      | Detector type enum                           |
+   | detSpec3     | See :ref:`Detector enum<detector enum>`      |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | version      | Detector header version. At 2                |
+   |              | [From detector udp header]                   |
+   +--------------+----------------------------------------------+
+   | flipRows     | 1 if rows should be flipped.                 |
+   |              | Usually for Eiger bottom.                    |
+   +--------------+----------------------------------------------+
+   | quad         | 1 if its an Eiger quad.                      |
+   +--------------+----------------------------------------------+
+   | addJsonHeader| Optional custom parameters that is required  |
+   |              | for processing code.                         |
+   +--------------+----------------------------------------------+
+

examples/eiger_10Gb.config

@@ -4,14 +4,26 @@ detsize 1024 512
 # detector hostname for controls
 hostname beb059+beb058+ 
 
-# 1Gb receiver pc hostname with tcp port to configure receiver
-rx_hostname x12sa-vcons:1991+x12sa-vcons:1992
+# increasing receiver tcp port (multi detector command)
+rx_tcpport 1991
+
+# 1Gb receiver pc hostname to configure receiver
+rx_hostname x12sa-vcons
+
+# or 1Gb receiver pc hostname with tcp port to configure receiver
+#rx_hostname x12sa-vcons:1991+x12sa-vcons:1992
+
+# increasing udp destination ports for all half modules
+udp_dstport 50011
 
 # udp port first quadrant, first halfmodule         
-0:udp_dstport 50011 
-
+#0:udp_dstport 50011 
 # udp port second quadrant, first halfmodule       
-0:udp_dstport2 50012 
+#0:udp_dstport2 50012 
+# udp port first quadrant, second halfmodule       
+#1:udp_dstport 50013 
+# udp port second quadrant, second halfmodule  
+#1:udp_dstport2 50014 
     
 # udp IP of the receiver over 10Gb              
 0:udp_dstip 10.0.30.210 
@@ -19,12 +31,6 @@ rx_hostname x12sa-vcons:1991+x12sa-vcons:1992
 # first half module 10 Gb IP (same subnet as 0:udp_dstip)
 0:udp_srcip 10.0.30.100 
 
-# udp port first quadrant, second halfmodule       
-1:udp_dstport 50013 
-
-# udp port second quadrant, second halfmodule  
-1:udp_dstport2 50014 
-    
 # udp IP of the receiver over 10Gb, 
 1:udp_dstip 10.0.40.210  
 

examples/eiger_1Gb.config

@@ -4,18 +4,23 @@ detsize 1024 512
 # detector hostname for controls
 hostname beb059+beb058+ 
 
-# 1Gb receiver pc hostname with tcp port to configure receiver
-rx_hostname x12sa-vcons:1991+x12sa-vcons:1992
+# increasing receiver tcp port (multi detector command)
+rx_tcpport 1991
+
+# 1Gb receiver pc hostname to configure receiver
+rx_hostname x12sa-vcons
+
+# increasing udp destination ports for all half modules
+udp_dstport 50011
 
 # udp port first quadrant, first halfmodule         
-0:udp_dstport 50011 
+#0:udp_dstport 50011 
 #udp port second quadrant, first halfmodule       
-0:udp_dstport2 50012 
-
+#0:udp_dstport2 50012 
 # udp port first quadrant, second halfmodule       
-1:udp_dstport 50013 
+#1:udp_dstport 50013 
 # udp port second quadrant, second halfmodule  
-1:udp_dstport2 50014 
+#1:udp_dstport2 50014 
     
 # output directory
 fpath /sls/X12SA/data/x12saop/Data10/Eiger0.5M

examples/jungfrau_two.config

@@ -4,14 +4,18 @@ detsize 1024 1024
 # detector hostname
 hostname bchip048+bchip052+
 
-# 1Gb receiver pc hostname  (default tcpport: 1954)
-rx_hostname pcmoench01:1954+pcmoench01:1955+
+# increasing receiver ports 1954 and 1955 (multi detector command)
+rx_tcpport 1954
+
+# 1Gb receiver pc hostname
+rx_hostname pcmoench01
 
 
+# increasing udp ports 50004 and 50005 (multi detector command)
+udp_dstport 50004
+# or custom udp destination port (receiver) for 1st module
+#0:udp_dstport 50014
 
-# udp configurations for 1st module
-# udp destination port (receiver)
-0:udp_dstport 50004
 
 # udp destination ip (receiver)
 0:udp_dstip 10.1.1.100
@@ -19,17 +23,11 @@ rx_hostname pcmoench01:1954+pcmoench01:1955+
 # udp source ip (same subnet as 0:udp_dstip)
 0:udp_srcip 10.1.1.10
 
-
-
-# udp configurations for 2nd module
-# udp destination port (receiver)
-1:udp_dstport 50005
-
 # udp destination ip (receiver)
-1:udp_dstip 10.1.1.100
+1:udp_dstip 10.1.2.100
 
 # udp source ip (same subnet as 1:udp_dstip)
-1:udp_srcip 10.1.1.11
+1:udp_srcip 10.1.2.11
 
 
 
@@ -45,5 +43,5 @@ timing trigger
 # output file directory
 fpath /external_pool/jungfrau_data/softwaretest
 
-# disable file writing
+# disable file writing (default)
 fwrite 0

examples/rawdata.config

@@ -0,0 +1,22 @@
+numfiles 1
+nthreads 5,
+fifosize 5000
+nsigma 5
+gainfile none
+detectorMode counting
+threshold 0
+pedestalfile none
+nframes 0
+xMin 0
+xMax 400
+yMin 0
+yMax 400
+outdir ./
+indir ./
+flist none
+fformat none
+runmin 0
+runmax -1
+readnrows 400
+eMin 0
+eMax 16000

examples/virtual_eiger_2_half_modules.config

@@ -2,10 +2,8 @@
 hostname localhost:1900+localhost:1902+
 
 # udp destination ports
-0:udp_dstport 50000
-0:udp_dstport2 50001
-1:udp_dstport 50002
-1:udp_dstport2 50003
+udp_dstport 50000
+udp_dstport2 50001
 
 # receiver hostname
 rx_hostname mpc1922:2000+mpc1922:2001+

examples/virtual_jungfrau_4.config

@@ -5,24 +5,26 @@ detsize 2048 1024
 virtual 4 1952
 
 # udp destination ports
-0:udp_dstport2 50001
-0:udp_dstport2 50002
-1:udp_dstport 50003
-1:udp_dstport2 50004
-2:udp_dstport 50005
-2:udp_dstport2 50006
-3:udp_dstport 50007
-3:udp_dstport2 50008
+udp_dstport 50001
+#0:udp_dstport2 50001
+#0:udp_dstport2 50002
+#1:udp_dstport 50003
+#1:udp_dstport2 50004
+#2:udp_dstport 50005
+#2:udp_dstport2 50006
+#3:udp_dstport 50007
+#3:udp_dstport2 50008
 
 # udp source ip (same subnet as udp_dstip)
 udp_srcip 192.168.1.100
 udp_srcip2 192.168.1.100
 
 # receiver hostname and tcpports
-0:rx_tcpport 1970
-1:rx_tcpport 1971
-2:rx_tcpport 1972
-3:rx_tcpport 1973
+rx_tcpport 1970
+#0:rx_tcpport 1970
+#1:rx_tcpport 1971
+#2:rx_tcpport 1972
+#3:rx_tcpport 1973
 rx_hostname mpc1922
 
 # udp destination ip from rx_hostname

examples/zmq.config

@@ -0,0 +1,16 @@
+numinterfaces 1
+rx_zmqip 10.1.2.102
+rx_zmqport 1978
+zmqip 129.129.202.57
+zmqport 1979
+nthreads 6
+fifosize 5000
+nsigma 5
+gainfile none
+nbinsx 5
+nbinsy 5
+etafile none
+etabinsx 1000
+etabinsy 1000
+etamin -1
+etamax 2

libs/rapidjson/rapidjson/document.h

@@ -316,7 +316,8 @@ struct GenericStringRef {
 
     GenericStringRef(const GenericStringRef& rhs) : s(rhs.s), length(rhs.length) {}
 
-    GenericStringRef& operator=(const GenericStringRef& rhs) { s = rhs.s; length = rhs.length; }
+    // Removed to fix failing build in GCC 14
+    // GenericStringRef& operator=(const GenericStringRef& rhs) { s = rhs.s; length = rhs.length; }
 
     //! implicit conversion to plain CharType pointer
     operator const Ch *() const { return s; }

psi-pmodules/DetectorSoftware/slsDetectorPackage/files/variants

@@ -3,3 +3,14 @@ slsDetectorPackage/7.0.1_rh7 stable cmake/3.15.5 zeromq/4.3.4 Qt/5.12.10
 slsDetectorPackage/7.0.1_rh8 stable cmake/3.15.5 zeromq/4.3.4 Qt/5.12.10
 slsDetectorPackage/7.0.2_rh7 stable cmake/3.15.5 zeromq/4.3.4 Qt/5.12.10
 slsDetectorPackage/7.0.2_rh8 stable cmake/3.15.5 zeromq/4.3.4 Qt/5.12.10
+slsDetectorPackage/7.0.3_rh7 stable cmake/3.15.5 zeromq/4.3.4 Qt/5.12.10
+slsDetectorPackage/7.0.3_rh8 stable cmake/3.15.5 zeromq/4.3.4 Qt/5.12.10
+slsDetectorPackage/8.0.0_rh7 stable cmake/3.15.5 Qt/5.12.10
+slsDetectorPackage/8.0.0_rh8 stable cmake/3.15.5 Qt/5.12.10
+slsDetectorPackage/8.0.1_rh7 stable cmake/3.15.5 Qt/5.12.10
+slsDetectorPackage/8.0.1_rh8 stable cmake/3.15.5 Qt/5.12.10
+slsDetectorPackage/8.0.2_rh7 stable cmake/3.15.5 Qt/5.12.10
+slsDetectorPackage/8.0.2_rh8 stable cmake/3.15.5 Qt/5.12.10
+slsDetectorPackage/9.0.0_rh8 stable cmake/3.15.5 Qt/5.12.10
+
+

pyctbgui/.github/workflows/build-and-test-inplace.yml

@@ -0,0 +1,35 @@
+name: Build inplace, run tests and linting
+
+on: [push]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: [ "3.10", "3.11"]
+
+    steps:
+      - uses: actions/checkout@v3
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v4
+        with:
+          python-version: ${{ matrix.python-version }}
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install ".[dev]"
+          if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
+      - name: Build C extension
+        run: |
+          make
+      - name: Run tests using pytest
+        run: |
+          make test
+      - name: check code formatting
+        run: |
+          make check_format
+      - name: lint the code with ruff
+        run: |
+           make lint

pyctbgui/.gitignore

@@ -0,0 +1,133 @@
+nohup.out
+.idea/
+tests/.tmp
+run_*
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/

pyctbgui/.pre-commit-config.yaml

@@ -0,0 +1,18 @@
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+- repo: https://github.com/google/yapf
+  rev: v0.40.1
+  hooks:
+    - id: yapf
+      name: yapf
+      language: python
+      entry: yapf
+      args: [-i,--style,pyproject.toml]
+      types: [python]
+
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  # Ruff version.
+  rev: v0.0.285
+  hooks:
+    - id: ruff

pyctbgui/CtbGui

@@ -0,0 +1,11 @@
+#!/usr/bin/env python3
+from PyQt5 import QtWidgets
+import sys
+
+from pyctbgui.ui import MainWindow
+
+if __name__ == "__main__":
+    app = QtWidgets.QApplication(sys.argv)
+    main = MainWindow()
+    main.show()
+    app.exec_()

pyctbgui/MANIFEST.in

@@ -0,0 +1,2 @@
+include pyctbgui/ui/*.ui
+recursive-include src *.c *.h

pyctbgui/Makefile

@@ -0,0 +1,39 @@
+# TODO! Add support for making the pkg? 
+# Which tests should we have? 
+
+default: ext
+
+ext: ## [DEFAULT] build c extension in place
+	rm -rf build/ pyctbgui/_decoder.cpython*
+	python setup.py build_ext --inplace
+
+clean: ## Remove the build folder and the shared library
+	rm -rf build/ pyctbgui/_decoder.cpython*
+
+test: ## Run unit tests using pytest
+	python -m pytest -v tests/unit
+
+test_gui: ## Run E2E tests using pytest
+	python -m pytest -v tests/gui
+
+setup_gui_test: ## Setup the environment for the E2E tests
+	ctbDetectorServer_virtual > /tmp/simulator.log 2>&1 &
+	slsReceiver > /tmp/slsReceiver.log 2>&1 &
+	sleep 3
+	sls_detector_put config tests/gui/data/simulator.config
+
+killall: ## Kill all the processes started by setup_gui_test
+	killall slsReceiver ctbDetectorServer_virtual
+
+
+lint: ## run ruff linter to check formatting errors
+	@ruff check tests pyctbgui *.py &&  echo "Ruff checks passed ✅"
+
+format: ## format code inplace using style in pyproject.toml
+	yapf --style pyproject.toml -m -r -i tests pyctbgui *.py
+
+check_format: ## Check if source is formatted properly
+	yapf --style pyproject.toml -r -d tests pyctbgui *.py
+
+help: # from compiler explorer
+	@grep -E '^[0-9a-zA-Z_-]+:.*?## .*$$' $(MAKEFILE_LIST) | sort | awk 'BEGIN {FS = ":.*?## "}; {printf "\033[36m%-20s\033[0m %s\n", $$1, $$2}'

pyctbgui/README.md

@@ -0,0 +1,31 @@
+# New Chip Test Board Gui using Python
+Prototype for a new python based GUI for the Chip Test Board
+
+
+## Getting started
+
+```bash 
+git clone https://github.com/slsdetectorgroup/pyctbgui.git
+cd pyctbgui
+make #compiles the c extension inplace
+./CtbGui
+```
+
+
+## Display help for the Makefile
+
+```
+$ make help
+check_format         Check if source is formatted properly
+clean                Remove the build folder and the shared library
+ext                  [DEFAULT] build c extension in place
+format               format code inplace using style in pyproject.toml
+lint                 run ruff linter to check formatting errors
+test                 Run unit tests using pytest
+```
+
+
+## setup pre-commit hooks
+```
+pre-commit install
+```

pyctbgui/client.py

@@ -0,0 +1,73 @@
+import json
+import zmq
+import numpy as np
+
+from slsdet import Detector
+import matplotlib.pyplot as plt
+
+det = Detector()
+
+zmqIp = det.zmqip
+zmqport = det.zmqport
+zmq_stream = det.rx_zmqstream
+
+
+def zmq_receiver():
+    context = zmq.Context()
+    socket = context.socket(zmq.SUB)
+    socket.connect(f"tcp://{zmqIp}:{zmqport}")
+    socket.subscribe("")
+
+    while True:
+        msg = socket.recv_multipart()
+        if len(msg) == 2:
+            header, data = msg
+            jsonHeader = json.loads(header)
+            print(jsonHeader)
+            print(f'Data size: {len(data)}')
+            data_array = np.array(np.frombuffer(data, dtype=np.uint16))
+            break
+    return data_array
+
+
+def analog(data_array):
+    adc_numbers = [
+        9, 8, 11, 10, 13, 12, 15, 14, 1, 0, 3, 2, 5, 4, 7, 6, 23, 22, 21, 20, 19, 18, 17, 16, 31, 30, 29, 28, 27, 26,
+        25, 24
+    ]
+
+    n_pixels_per_sc = 5000
+
+    sc_width = 25
+    analog_frame = np.zeros((400, 400))
+    order_sc = np.zeros((400, 400))
+
+    for n_pixel in range(n_pixels_per_sc):
+        #these_dbits = int(digital_data[n_pixel])
+
+        for i_sc, adc_nr in enumerate(adc_numbers):
+            # ANALOG
+            col = ((adc_nr % 16) * sc_width) + (n_pixel % sc_width)
+            if i_sc < 16:
+                row = 199 - int(n_pixel / sc_width)
+            else:
+                row = 200 + int(n_pixel / sc_width)
+
+            index_min = n_pixel * 32 + i_sc
+
+            pixel_value = data_array[index_min]
+            analog_frame[row, col] = pixel_value
+            order_sc[row, col] = i_sc
+    return analog_frame
+
+
+fig, ax = plt.subplots()
+data = analog(data_array=zmq_receiver())
+im = ax.imshow(data)
+ax.invert_yaxis()
+fig.colorbar(im)
+plt.show()
+# pg.image(data, title="test")
+
+# if __name__ == '__main__':
+#          pg.QtWidgets.QApplication.exec_()

pyctbgui/pyctbgui/__init__.py

@@ -0,0 +1,2 @@
+from .utils.defines import Defines as defs
+from .utils import bit_utils, alias_utility

pyctbgui/pyctbgui/services/ADC.py

@@ -0,0 +1,420 @@
+import logging
+import typing
+from functools import partial
+from pathlib import Path
+
+import numpy as np
+from PyQt5 import QtWidgets, uic
+import pyqtgraph as pg
+from pyqtgraph import LegendItem
+
+from pyctbgui.utils import decoder
+from pyctbgui.utils.bit_utils import bit_is_set, manipulate_bit
+from pyctbgui.utils.defines import Defines
+import pyctbgui.utils.pixelmap as pm
+from pyctbgui.utils.recordOrApplyPedestal import recordOrApplyPedestal
+
+from slsdet import detectorType
+
+if typing.TYPE_CHECKING:
+    from pyctbgui.services import AcquisitionTab, PlotTab
+
+
+class AdcTab(QtWidgets.QWidget):
+
+    def __init__(self, parent, *args, **kwargs):
+        super().__init__(parent, *args, **kwargs)
+        uic.loadUi(Path(__file__).parent.parent / 'ui' / "adc.ui", parent)
+        self.view = parent
+        self.mainWindow = None
+        self.det = None
+        self.plotTab: PlotTab | None = None
+        self.acquisitionTab: AcquisitionTab | None = None
+        self.legend: LegendItem | None = None
+        self.logger = logging.getLogger('AdcTab')
+        self.tengiga = True
+
+    def setup_ui(self):
+        self.plotTab = self.mainWindow.plotTab
+        self.acquisitionTab = self.mainWindow.acquisitionTab
+        for i in range(Defines.adc.count):
+            self.setADCButtonColor(i, self.plotTab.getRandomColor())
+        self.initializeAllAnalogPlots()
+
+        self.legend = self.mainWindow.plotAnalogWaveform.getPlotItem().legend
+        self.legend.clear()
+        # subscribe to toggle legend
+        self.plotTab.subscribeToggleLegend(self.updateLegend)
+        
+        if self.det.type == detectorType.XILINX_CHIPTESTBOARD:
+            self.view.checkBoxADC0_15Inv.setDisabled(True)
+            self.view.checkBoxADC16_31Inv.setDisabled(True)
+            self.view.lineEditADCInversion.setDisabled(True)
+            self.view.labelADCInversion.setDisabled(True)
+
+    def initializeAllAnalogPlots(self):
+        self.mainWindow.plotAnalogWaveform = pg.plot()
+        self.mainWindow.plotAnalogWaveform.addLegend(colCount=Defines.colCount)
+        self.mainWindow.verticalLayoutPlot.addWidget(self.mainWindow.plotAnalogWaveform, 1)
+        self.mainWindow.analogPlots = {}
+        waveform = np.zeros(1000)
+        for i in range(Defines.adc.count):
+            pen = pg.mkPen(color=self.getADCButtonColor(i), width=1)
+            legendName = getattr(self.view, f"labelADC{i}").text()
+            self.mainWindow.analogPlots[i] = self.mainWindow.plotAnalogWaveform.plot(waveform,
+                                                                                     pen=pen,
+                                                                                     name=legendName)
+            self.mainWindow.analogPlots[i].hide()
+
+        self.mainWindow.plotAnalogImage = pg.ImageView()
+        self.mainWindow.nAnalogRows = 0
+        self.mainWindow.nAnalogCols = 0
+        self.mainWindow.analog_frame = np.zeros((self.mainWindow.nAnalogRows, self.mainWindow.nAnalogCols))
+        self.mainWindow.plotAnalogImage.getView().invertY(False)
+        self.mainWindow.plotAnalogImage.setImage(self.mainWindow.analog_frame)
+        self.mainWindow.verticalLayoutPlot.addWidget(self.mainWindow.plotAnalogImage, 2)
+
+    def connect_ui(self):
+        for i in range(Defines.adc.count):
+            if self.det.type == detectorType.CHIPTESTBOARD:
+                getattr(self.view, f"checkBoxADC{i}Inv").stateChanged.connect(partial(self.setADCInv, i))
+            getattr(self.view, f"checkBoxADC{i}En").stateChanged.connect(partial(self.setADCEnable, i))
+            getattr(self.view, f"checkBoxADC{i}Plot").stateChanged.connect(partial(self.setADCEnablePlot, i))
+            getattr(self.view, f"pushButtonADC{i}").clicked.connect(partial(self.selectADCColor, i))
+        self.view.checkBoxADC0_15En.stateChanged.connect(partial(self.setADCEnableRange, 0, Defines.adc.half))
+        self.view.checkBoxADC16_31En.stateChanged.connect(
+            partial(self.setADCEnableRange, Defines.adc.half, Defines.adc.count))
+        self.view.checkBoxADC0_15Plot.stateChanged.connect(partial(self.setADCEnablePlotRange, 0, Defines.adc.half))
+        self.view.checkBoxADC16_31Plot.stateChanged.connect(
+            partial(self.setADCEnablePlotRange, Defines.adc.half, Defines.adc.count))
+        self.view.lineEditADCEnable.editingFinished.connect(self.setADCEnableReg)
+        if self.det.type == detectorType.CHIPTESTBOARD:
+            self.view.checkBoxADC0_15Inv.stateChanged.connect(partial(self.setADCInvRange, 0, Defines.adc.half))
+            self.view.checkBoxADC16_31Inv.stateChanged.connect(
+            partial(self.setADCInvRange, Defines.adc.half, Defines.adc.count))
+            self.view.lineEditADCInversion.editingFinished.connect(self.setADCInvReg)
+
+    def refresh(self):
+        self.updateADCNames()
+        if self.det.type == detectorType.CHIPTESTBOARD:
+            self.updateADCInv()
+        self.updateADCEnable()
+
+        # ADCs Tab functions
+
+    def getEnabledPlots(self):
+        """
+        return plots that are shown (checkBoxADC#Plot is checked)
+        """
+        enabledPlots = []
+        self.legend.clear()
+        for i in range(Defines.adc.count):
+            if getattr(self.view, f'checkBoxADC{i}Plot').isChecked():
+                plotName = getattr(self.view, f"labelADC{i}").text()
+                enabledPlots.append((self.mainWindow.analogPlots[i], plotName))
+        return enabledPlots
+
+    def updateLegend(self):
+        """
+        update the legend for the ADC waveform plot
+        should be called after checking or unchecking plot checkbox
+        """
+        if not self.mainWindow.showLegend:
+            self.legend.clear()
+        else:
+            for plot, name in self.getEnabledPlots():
+                self.legend.addItem(plot, name)
+
+    def updateADCNames(self):
+        """
+        get adc names from detector and update them in the UI
+        """
+        for i, adc_name in enumerate(self.det.getAdcNames()):
+            getattr(self.view, f"labelADC{i}").setText(adc_name)
+
+    def processWaveformData(self, data: bytes, aSamples: int) -> dict[str, np.ndarray]:
+        """
+        view function
+        plots processed waveform data
+        @param data: raw waveform data
+        @param aSamples: analog samples
+        @return: waveform dict returned to handle it for saving the output
+        """
+
+        waveforms = {}
+        analog_array = self._processWaveformData(data, aSamples, self.mainWindow.nADCEnabled)
+        idx = 0
+        for i in range(Defines.adc.count):
+            checkBoxPlot = getattr(self.view, f"checkBoxADC{i}Plot")
+            checkBoxEn = getattr(self.view, f"checkBoxADC{i}En")
+
+            if checkBoxEn.isChecked() and checkBoxPlot.isChecked():
+                waveform = analog_array[:, idx]
+                idx += 1
+                self.mainWindow.analogPlots[i].setData(waveform)
+                plotName = getattr(self.view, f"labelADC{i}").text()
+                waveforms[plotName] = waveform
+        return waveforms
+
+    @recordOrApplyPedestal
+    def _processWaveformData(self, data: bytes, aSamples: int, nADCEnabled: int) -> np.ndarray:
+        """
+        model function
+        processes raw waveform data
+        @param data: raw waveform data
+        @param aSamples: analog samples
+        @param nADCEnabled: number of enabled ADCs
+        @return: processed waveform data
+        """
+        analog_array = np.array(np.frombuffer(data, dtype=np.uint16, count=nADCEnabled * aSamples))
+        return analog_array.reshape(-1, nADCEnabled)
+
+    def processImageData(self, data, aSamples):
+        """
+        process the raw receiver data for analog image
+        data: raw analog image
+        aSamples: analog samples
+        """
+        # get zoom state
+        viewBox = self.mainWindow.plotAnalogImage.getView()
+        state = viewBox.getState()
+        try:
+            self.mainWindow.analog_frame = self._processImageData(data, aSamples, self.mainWindow.nADCEnabled)
+            self.plotTab.ignoreHistogramSignal = True
+            self.mainWindow.plotAnalogImage.setImage(self.mainWindow.analog_frame.T)
+        except Exception:
+            self.logger.exception('Exception Caught')
+            self.mainWindow.statusbar.setStyleSheet("color:red")
+            message = f'Warning: Invalid size for Analog Image. Expected' \
+                      f' {self.mainWindow.nAnalogRows * self.mainWindow.nAnalogCols} ' \
+                      f'size, got {self.mainWindow.analog_frame.size} instead.'
+            self.acquisitionTab.updateCurrentFrame('Invalid Image')
+
+            self.mainWindow.statusbar.showMessage(message)
+            print(message)
+
+        self.plotTab.setFrameLimits(self.mainWindow.analog_frame)
+
+        # keep the zoomed in state (not 1st image)
+        if self.mainWindow.firstAnalogImage:
+            self.mainWindow.firstAnalogImage = False
+        else:
+            viewBox.setState(state)
+        return self.mainWindow.analog_frame.T
+
+    @recordOrApplyPedestal
+    def _processImageData(self, data, aSamples, nADCEnabled):
+        analog_array = np.array(np.frombuffer(data, dtype=np.uint16, count=nADCEnabled * aSamples))
+        return decoder.decode(analog_array, pm.moench04_analog())
+
+    def getADCEnableReg(self):
+        if self.det.type == detectorType.CHIPTESTBOARD:
+            self.tengiga = self.det.tengiga
+        retval = self.det.adcenable10g
+        if not self.tengiga:
+            retval = self.det.adcenable
+        self.view.lineEditADCEnable.editingFinished.disconnect()
+        self.view.lineEditADCEnable.setText("0x{:08x}".format(retval))
+        self.view.lineEditADCEnable.editingFinished.connect(self.setADCEnableReg)
+        return retval
+
+    def setADCEnableReg(self):
+        self.view.lineEditADCEnable.editingFinished.disconnect()
+        try:
+            mask = int(self.view.lineEditADCEnable.text(), 16)
+            if self.tengiga:
+                self.det.adcenable10g = mask
+            else:
+                self.det.adcenable = mask
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "ADC Enable Fail", str(e), QtWidgets.QMessageBox.Ok)
+            pass
+        # TODO: handling double event exceptions
+        self.view.lineEditADCEnable.editingFinished.connect(self.setADCEnableReg)
+        self.updateADCEnable()
+
+    def getADCEnable(self, i, mask):
+        checkBox = getattr(self.view, f"checkBoxADC{i}En")
+        checkBox.stateChanged.disconnect()
+        checkBox.setChecked(bit_is_set(mask, i))
+        checkBox.stateChanged.connect(partial(self.setADCEnable, i))
+
+    def updateADCEnable(self):
+        retval = self.getADCEnableReg()
+        self.mainWindow.nADCEnabled = bin(retval).count('1')
+        for i in range(Defines.adc.count):
+            self.getADCEnable(i, retval)
+            self.getADCEnablePlot(i)
+            self.getADCEnableColor(i)
+            self.plotTab.addSelectedAnalogPlots(i)
+        self.getADCEnableRange(retval)
+        self.getADCEnablePlotRange()
+
+    def setADCEnable(self, i):
+        checkBox = getattr(self.view, f"checkBoxADC{i}En")
+        try:
+            if self.tengiga:
+                enableMask = manipulate_bit(checkBox.isChecked(), self.det.adcenable10g, i)
+                self.det.adcenable10g = enableMask
+            else:
+                enableMask = manipulate_bit(checkBox.isChecked(), self.det.adcenable, i)
+                self.det.adcenable = enableMask
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "ADC Enable Fail", str(e), QtWidgets.QMessageBox.Ok)
+
+        self.updateADCEnable()
+
+    def getADCEnableRange(self, mask):
+        self.view.checkBoxADC0_15En.stateChanged.disconnect()
+        self.view.checkBoxADC16_31En.stateChanged.disconnect()
+        self.view.checkBoxADC0_15En.setChecked((mask & Defines.adc.BIT0_15_MASK) == Defines.adc.BIT0_15_MASK)
+        self.view.checkBoxADC16_31En.setChecked((mask & Defines.adc.BIT16_31_MASK) == Defines.adc.BIT16_31_MASK)
+        self.view.checkBoxADC0_15En.stateChanged.connect(partial(self.setADCEnableRange, 0, Defines.adc.half))
+        self.view.checkBoxADC16_31En.stateChanged.connect(
+            partial(self.setADCEnableRange, Defines.adc.half, Defines.adc.count))
+
+    def setADCEnableRange(self, start_nr, end_nr):
+        mask = self.getADCEnableReg()
+        checkBox = getattr(self.view, f"checkBoxADC{start_nr}_{end_nr - 1}En")
+        for i in range(start_nr, end_nr):
+            mask = manipulate_bit(checkBox.isChecked(), mask, i)
+        try:
+            if self.tengiga:
+                self.det.adcenable10g = mask
+            else:
+                self.det.adcenable = mask
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "ADC Enable Fail", str(e), QtWidgets.QMessageBox.Ok)
+            pass
+        self.updateADCEnable()
+
+    def getADCEnablePlot(self, i):
+        checkBox = getattr(self.view, f"checkBoxADC{i}En")
+        checkBoxPlot = getattr(self.view, f"checkBoxADC{i}Plot")
+        checkBoxPlot.setEnabled(checkBox.isChecked())
+
+    def setADCEnablePlot(self, i):
+        pushButton = getattr(self.view, f"pushButtonADC{i}")
+        checkBox = getattr(self.view, f"checkBoxADC{i}Plot")
+        pushButton.setEnabled(checkBox.isChecked())
+
+        self.getADCEnablePlotRange()
+        self.plotTab.addSelectedAnalogPlots(i)
+        self.updateLegend()
+
+    def getADCEnablePlotRange(self):
+        self.view.checkBoxADC0_15Plot.stateChanged.disconnect()
+        self.view.checkBoxADC16_31Plot.stateChanged.disconnect()
+        self.view.checkBoxADC0_15Plot.setEnabled(
+            all(getattr(self.view, f"checkBoxADC{i}Plot").isEnabled() for i in range(Defines.adc.half)))
+        self.view.checkBoxADC16_31Plot.setEnabled(
+            all(
+                getattr(self.view, f"checkBoxADC{i}Plot").isEnabled()
+                for i in range(Defines.adc.half, Defines.adc.count)))
+        self.view.checkBoxADC0_15Plot.setChecked(
+            all(getattr(self.view, f"checkBoxADC{i}Plot").isChecked() for i in range(Defines.adc.half)))
+        self.view.checkBoxADC16_31Plot.setChecked(
+            all(
+                getattr(self.view, f"checkBoxADC{i}Plot").isChecked()
+                for i in range(Defines.adc.half, Defines.adc.count)))
+        self.view.checkBoxADC0_15Plot.stateChanged.connect(partial(self.setADCEnablePlotRange, 0, Defines.adc.half))
+        self.view.checkBoxADC16_31Plot.stateChanged.connect(
+            partial(self.setADCEnablePlotRange, Defines.adc.half, Defines.adc.count))
+
+    def setADCEnablePlotRange(self, start_nr, end_nr):
+        checkBox = getattr(self.view, f"checkBoxADC{start_nr}_{end_nr - 1}Plot")
+        enable = checkBox.isChecked()
+        for i in range(start_nr, end_nr):
+            checkBox = getattr(self.view, f"checkBoxADC{i}Plot")
+            checkBox.setChecked(enable)
+        self.plotTab.addAllSelectedAnalogPlots()
+
+    def getADCEnableColor(self, i):
+        checkBox = getattr(self.view, f"checkBoxADC{i}Plot")
+        pushButton = getattr(self.view, f"pushButtonADC{i}")
+        pushButton.setEnabled(checkBox.isEnabled() and checkBox.isChecked())
+
+    def selectADCColor(self, i):
+        pushButton = getattr(self.view, f"pushButtonADC{i}")
+        self.plotTab.showPalette(pushButton)
+        pen = pg.mkPen(color=self.getADCButtonColor(i), width=1)
+        self.mainWindow.analogPlots[i].setPen(pen)
+
+    def getADCButtonColor(self, i):
+        pushButton = getattr(self.view, f"pushButtonADC{i}")
+        return self.plotTab.getActiveColor(pushButton)
+
+    def setADCButtonColor(self, i, color):
+        pushButton = getattr(self.view, f"pushButtonADC{i}")
+        return self.plotTab.setActiveColor(pushButton, color)
+
+    def getADCInvReg(self):
+        retval = self.det.adcinvert
+        self.view.lineEditADCInversion.editingFinished.disconnect()
+        self.view.lineEditADCInversion.setText("0x{:08x}".format(retval))
+        self.view.lineEditADCInversion.editingFinished.connect(self.setADCInvReg)
+        return retval
+
+    def setADCInvReg(self):
+        self.view.lineEditADCInversion.editingFinished.disconnect()
+        try:
+            self.det.adcinvert = int(self.view.lineEditADCInversion.text(), 16)
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "ADC Inversion Fail", str(e), QtWidgets.QMessageBox.Ok)
+            pass
+        # TODO: handling double event exceptions
+        self.view.lineEditADCInversion.editingFinished.connect(self.setADCInvReg)
+        self.updateADCInv()
+
+    def getADCInv(self, i, inv):
+        checkBox = getattr(self.view, f"checkBoxADC{i}Inv")
+        checkBox.stateChanged.disconnect()
+        checkBox.setChecked(bit_is_set(inv, i))
+        checkBox.stateChanged.connect(partial(self.setADCInv, i))
+
+    def updateADCInv(self):
+        retval = self.getADCInvReg()
+        for i in range(Defines.adc.count):
+            self.getADCInv(i, retval)
+        self.getADCInvRange(retval)
+
+    def setADCInv(self, i):
+        out = self.det.adcinvert
+        checkBox = getattr(self.view, f"checkBoxADC{i}Inv")
+        mask = manipulate_bit(checkBox.isChecked(), out, i)
+        self.det.adcinvert = mask
+
+        retval = self.getADCInvReg()
+        self.getADCInv(i, retval)
+        self.getADCInvRange(retval)
+
+    def getADCInvRange(self, inv):
+        self.view.checkBoxADC0_15Inv.stateChanged.disconnect()
+        self.view.checkBoxADC16_31Inv.stateChanged.disconnect()
+        self.view.checkBoxADC0_15Inv.setChecked((inv & Defines.adc.BIT0_15_MASK) == Defines.adc.BIT0_15_MASK)
+        self.view.checkBoxADC16_31Inv.setChecked((inv & Defines.adc.BIT16_31_MASK) == Defines.adc.BIT16_31_MASK)
+        self.view.checkBoxADC0_15Inv.stateChanged.connect(partial(self.setADCInvRange, 0, Defines.adc.half))
+        self.view.checkBoxADC16_31Inv.stateChanged.connect(
+            partial(self.setADCInvRange, Defines.adc.half, Defines.adc.count))
+
+    def setADCInvRange(self, start_nr, end_nr):
+        out = self.det.adcinvert
+        checkBox = getattr(self.view, f"checkBoxADC{start_nr}_{end_nr - 1}Inv")
+        mask = getattr(Defines.adc, f"BIT{start_nr}_{end_nr - 1}_MASK")
+        if checkBox.isChecked():
+            self.det.adcinvert = out | mask
+        else:
+            self.det.adcinvert = out & ~mask
+
+        self.updateADCInv()
+
+    def saveParameters(self) -> list[str]:
+        if self.det.type == detectorType.CHIPTESTBOARD:
+            return [
+                f"adcenable {self.view.lineEditADCEnable.text()}",
+                f"adcinvert {self.view.lineEditADCInversion.text()}",
+            ]
+        else:
+            return [
+                f"adcenable {self.view.lineEditADCEnable.text()}"
+            ]     

pyctbgui/pyctbgui/services/Acquisition.py

@@ -0,0 +1,755 @@
+import json
+import typing
+from pathlib import Path
+import numpy as np
+import time
+import zmq
+from PyQt5 import QtWidgets, uic
+import logging
+
+from slsdet import readoutMode, runStatus, detectorType
+from pyctbgui.utils.defines import Defines
+from pyctbgui.utils.numpyWriter.npy_writer import NumpyFileManager
+from pyctbgui.utils.numpyWriter.npz_writer import NpzFileWriter
+
+if typing.TYPE_CHECKING:
+    # only used for type hinting. To avoid circular dependencies these
+    # won't be imported in runtime
+    from pyctbgui.services import SignalsTab, TransceiverTab, AdcTab, PlotTab
+
+
+class AcquisitionTab(QtWidgets.QWidget):
+
+    def __init__(self, parent):
+        self.__isWaveform = None
+        super().__init__(parent)
+        self.currentMeasurement = None
+        self.dsamples = None
+        self.stoppedFlag = None
+        self.asamples = None
+        self.tsamples = None
+        uic.loadUi(Path(__file__).parent.parent / 'ui' / "acquisition.ui", parent)
+        self.view = parent
+        self.mainWindow = None
+        self.det = None
+        self.signalsTab: SignalsTab = None
+        self.transceiverTab: TransceiverTab = None
+        self.adcTab: AdcTab = None
+        self.plotTab: PlotTab = None
+        self.writeNumpy: bool = False
+        self.outputDir: Path = Path('/')
+        self.outputFileNamePrefix: str = ''
+        self.numpyFileManagers: dict[str, NumpyFileManager] = {}
+
+        self.logger = logging.getLogger('AcquisitionTab')
+
+    def setup_ui(self):
+        self.signalsTab = self.mainWindow.signalsTab
+        self.transceiverTab = self.mainWindow.transceiverTab
+        self.adcTab = self.mainWindow.adcTab
+        self.plotTab = self.mainWindow.plotTab
+        self.toggleStartButton(False)
+        if self.det.type == detectorType.XILINX_CHIPTESTBOARD:
+            self.view.labelRunF.setDisabled(True)
+            self.view.labelADCF.setDisabled(True)
+            self.view.labelADCPhase.setDisabled(True)
+            self.view.labelADCPipeline.setDisabled(True)
+            self.view.labelDBITF.setDisabled(True)
+            self.view.labelDBITPhase.setDisabled(True)
+            self.view.labelDBITPipeline.setDisabled(True)
+            self.view.spinBoxRunF.setDisabled(True)
+            self.view.spinBoxADCF.setDisabled(True)
+            self.view.spinBoxADCPhase.setDisabled(True)
+            self.view.spinBoxADCPipeline.setDisabled(True)
+            self.view.spinBoxDBITF.setDisabled(True)
+            self.view.spinBoxDBITPhase.setDisabled(True)
+            self.view.spinBoxDBITPipeline.setDisabled(True)
+
+    def connect_ui(self):
+        # For Acquistions Tab
+        self.view.comboBoxROMode.currentIndexChanged.connect(self.setReadOut)
+        self.view.spinBoxTransceiver.editingFinished.connect(self.setTransceiver)
+        self.view.spinBoxAnalog.editingFinished.connect(self.setAnalog)
+        self.view.spinBoxDigital.editingFinished.connect(self.setDigital)
+        
+        if self.det.type == detectorType.CHIPTESTBOARD:
+            self.view.spinBoxRunF.editingFinished.connect(self.setRunFrequency)
+            self.view.spinBoxADCF.editingFinished.connect(self.setADCFrequency)
+            self.view.spinBoxADCPhase.editingFinished.connect(self.setADCPhase)
+            self.view.spinBoxADCPipeline.editingFinished.connect(self.setADCPipeline)
+            self.view.spinBoxDBITF.editingFinished.connect(self.setDBITFrequency)
+            self.view.spinBoxDBITPhase.editingFinished.connect(self.setDBITPhase)
+            self.view.spinBoxDBITPipeline.editingFinished.connect(self.setDBITPipeline)
+
+        self.view.checkBoxFileWriteRaw.stateChanged.connect(self.setFileWrite)
+        self.view.checkBoxFileWriteNumpy.stateChanged.connect(self.setFileWriteNumpy)
+        self.view.lineEditFileName.editingFinished.connect(self.setFileName)
+        self.view.lineEditFilePath.editingFinished.connect(self.setFilePath)
+        self.view.pushButtonFilePath.clicked.connect(self.browseFilePath)
+        self.view.spinBoxAcquisitionIndex.editingFinished.connect(self.setAccquisitionIndex)
+        self.view.spinBoxFrames.editingFinished.connect(self.setFrames)
+        self.view.spinBoxPeriod.editingFinished.connect(self.setPeriod)
+        self.view.comboBoxPeriod.currentIndexChanged.connect(self.setPeriod)
+        self.view.spinBoxTriggers.editingFinished.connect(self.setTriggers)
+
+    def refresh(self):
+        self.getReadout()
+        self.getTransceiver()
+        self.getAnalog()
+        self.getDigital()
+
+        if self.det.type == detectorType.CHIPTESTBOARD:
+            self.getRunFrequency()
+            self.getADCFrequency()
+            self.getADCPhase()
+            self.getADCPipeline()
+            self.getDBITFrequency()
+            self.getDBITPhase()
+            self.getDBITPipeline()
+
+        self.getFileWrite()
+        self.getFileName()
+        self.getFilePath()
+        self.getAccquisitionIndex()
+        self.getFrames()
+        self.getTriggers()
+        self.getPeriod()
+        self.updateDetectorStatus(self.det.status)
+
+    # Acquisition Tab functions
+
+    def getReadout(self):
+        self.view.comboBoxROMode.currentIndexChanged.disconnect()
+        self.view.spinBoxAnalog.editingFinished.disconnect()
+        self.view.spinBoxDigital.editingFinished.disconnect()
+        self.view.spinBoxTransceiver.editingFinished.disconnect()
+
+        self.mainWindow.romode = self.det.romode
+        self.view.comboBoxROMode.setCurrentIndex(self.mainWindow.romode.value)
+        match self.mainWindow.romode:
+            case readoutMode.ANALOG_ONLY:
+                self.view.spinBoxAnalog.setEnabled(True)
+                self.view.labelAnalog.setEnabled(True)
+                self.view.spinBoxDigital.setDisabled(True)
+                self.view.labelDigital.setDisabled(True)
+                self.view.labelTransceiver.setDisabled(True)
+                self.view.spinBoxTransceiver.setDisabled(True)
+            case readoutMode.DIGITAL_ONLY:
+                self.view.spinBoxAnalog.setDisabled(True)
+                self.view.labelAnalog.setDisabled(True)
+                self.view.spinBoxDigital.setEnabled(True)
+                self.view.labelDigital.setEnabled(True)
+                self.view.labelTransceiver.setDisabled(True)
+                self.view.spinBoxTransceiver.setDisabled(True)
+            case readoutMode.ANALOG_AND_DIGITAL:
+                self.view.spinBoxAnalog.setEnabled(True)
+                self.view.labelAnalog.setEnabled(True)
+                self.view.spinBoxDigital.setEnabled(True)
+                self.view.labelDigital.setEnabled(True)
+                self.view.labelTransceiver.setDisabled(True)
+                self.view.spinBoxTransceiver.setDisabled(True)
+            case readoutMode.TRANSCEIVER_ONLY:
+                self.view.spinBoxAnalog.setDisabled(True)
+                self.view.labelAnalog.setDisabled(True)
+                self.view.spinBoxDigital.setDisabled(True)
+                self.view.labelDigital.setDisabled(True)
+                self.view.labelTransceiver.setEnabled(True)
+                self.view.spinBoxTransceiver.setEnabled(True)
+            case _:
+                self.view.spinBoxAnalog.setDisabled(True)
+                self.view.labelAnalog.setDisabled(True)
+                self.view.spinBoxDigital.setEnabled(True)
+                self.view.labelDigital.setEnabled(True)
+                self.view.labelTransceiver.setEnabled(True)
+                self.view.spinBoxTransceiver.setEnabled(True)
+
+        self.view.comboBoxROMode.currentIndexChanged.connect(self.setReadOut)
+        self.view.spinBoxAnalog.editingFinished.connect(self.setAnalog)
+        self.view.spinBoxDigital.editingFinished.connect(self.setDigital)
+        self.view.spinBoxTransceiver.editingFinished.connect(self.setTransceiver)
+        self.getAnalog()
+        self.getDigital()
+        self.plotTab.showPlot()
+
+    def plotReferesh(self):
+        self.read_zmq()
+
+    def setReadOut(self):
+        self.view.comboBoxROMode.currentIndexChanged.disconnect()
+        try:
+            if self.view.comboBoxROMode.currentIndex() == 0:
+                self.det.romode = readoutMode.ANALOG_ONLY
+            elif self.view.comboBoxROMode.currentIndex() == 1:
+                self.det.romode = readoutMode.DIGITAL_ONLY
+            elif self.view.comboBoxROMode.currentIndex() == 2:
+                self.det.romode = readoutMode.ANALOG_AND_DIGITAL
+            elif self.view.comboBoxROMode.currentIndex() == 3:
+                self.det.romode = readoutMode.TRANSCEIVER_ONLY
+            else:
+                self.det.romode = readoutMode.DIGITAL_AND_TRANSCEIVER
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Readout Mode Fail", str(e), QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.comboBoxROMode.currentIndexChanged.connect(self.setReadOut)
+        self.getReadout()
+
+    def getRunFrequency(self):
+        self.view.spinBoxRunF.editingFinished.disconnect()
+        self.view.spinBoxRunF.setValue(self.det.runclk)
+        self.view.spinBoxRunF.editingFinished.connect(self.setRunFrequency)
+
+    def setRunFrequency(self):
+        self.view.spinBoxRunF.editingFinished.disconnect()
+        try:
+            self.det.runclk = self.view.spinBoxRunF.value()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Run Frequency Fail", str(e), QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.spinBoxRunF.editingFinished.connect(self.setRunFrequency)
+        self.getRunFrequency()
+
+    def getTransceiver(self):
+        self.view.spinBoxTransceiver.editingFinished.disconnect()
+        self.tsamples = self.det.tsamples
+        self.view.spinBoxTransceiver.setValue(self.tsamples)
+        self.view.spinBoxTransceiver.editingFinished.connect(self.setTransceiver)
+
+    def setTransceiver(self):
+        self.view.spinBoxTransceiver.editingFinished.disconnect()
+        try:
+            self.det.tsamples = self.view.spinBoxTransceiver.value()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Transceiver Samples Fail", str(e),
+                                          QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.spinBoxTransceiver.editingFinished.connect(self.setTransceiver)
+        self.getTransceiver()
+
+    def getAnalog(self):
+        self.view.spinBoxAnalog.editingFinished.disconnect()
+        self.asamples = self.det.asamples
+        self.view.spinBoxAnalog.setValue(self.asamples)
+        self.view.spinBoxAnalog.editingFinished.connect(self.setAnalog)
+
+    def setAnalog(self):
+        self.view.spinBoxAnalog.editingFinished.disconnect()
+        try:
+            self.det.asamples = self.view.spinBoxAnalog.value()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Digital Samples Fail", str(e), QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.spinBoxAnalog.editingFinished.connect(self.setAnalog)
+        self.getAnalog()
+
+    def getDigital(self):
+        self.view.spinBoxDigital.editingFinished.disconnect()
+        self.dsamples = self.det.dsamples
+        self.view.spinBoxDigital.setValue(self.dsamples)
+        self.view.spinBoxDigital.editingFinished.connect(self.setDigital)
+
+    def setDigital(self):
+        self.view.spinBoxDigital.editingFinished.disconnect()
+        try:
+            self.det.dsamples = self.view.spinBoxDigital.value()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Digital Samples Fail", str(e), QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.spinBoxDigital.editingFinished.connect(self.setDigital)
+        self.getDigital()
+
+    def getADCFrequency(self):
+        self.view.spinBoxADCF.editingFinished.disconnect()
+        self.view.spinBoxADCF.setValue(self.det.adcclk)
+        self.view.spinBoxADCF.editingFinished.connect(self.setADCFrequency)
+
+    def setADCFrequency(self):
+        self.view.spinBoxADCF.editingFinished.disconnect()
+        try:
+            self.det.adcclk = self.view.spinBoxADCF.value()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "ADC Frequency Fail", str(e), QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.spinBoxADCF.editingFinished.connect(self.setADCFrequency)
+        self.getADCFrequency()
+
+    def getADCPhase(self):
+        self.view.spinBoxADCPhase.editingFinished.disconnect()
+        self.view.spinBoxADCPhase.setValue(self.det.adcphase)
+        self.view.spinBoxADCPhase.editingFinished.connect(self.setADCPhase)
+
+    def setADCPhase(self):
+        self.view.spinBoxADCPhase.editingFinished.disconnect()
+        try:
+            self.det.adcphase = self.view.spinBoxADCPhase.value()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "ADC Phase Fail", str(e), QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.spinBoxADCPhase.editingFinished.connect(self.setADCPhase)
+        self.getADCPhase()
+
+    def getADCPipeline(self):
+        self.view.spinBoxADCPipeline.editingFinished.disconnect()
+        self.view.spinBoxADCPipeline.setValue(self.det.adcpipeline)
+        self.view.spinBoxADCPipeline.editingFinished.connect(self.setADCPipeline)
+
+    def setADCPipeline(self):
+        self.view.spinBoxADCPipeline.editingFinished.disconnect()
+        try:
+            self.det.adcpipeline = self.view.spinBoxADCPipeline.value()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "ADC Pipeline Fail", str(e), QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.spinBoxADCPipeline.editingFinished.connect(self.setADCPipeline)
+        self.getADCPipeline()
+
+    def getDBITFrequency(self):
+        self.view.spinBoxDBITF.editingFinished.disconnect()
+        self.view.spinBoxDBITF.setValue(self.det.dbitclk)
+        self.view.spinBoxDBITF.editingFinished.connect(self.setDBITFrequency)
+
+    def setDBITFrequency(self):
+        self.view.spinBoxDBITF.editingFinished.disconnect()
+        try:
+            self.det.dbitclk = self.view.spinBoxDBITF.value()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "DBit Frequency Fail", str(e), QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.spinBoxDBITF.editingFinished.connect(self.setDBITFrequency)
+        self.getDBITFrequency()
+
+    def getDBITPhase(self):
+        self.view.spinBoxDBITPhase.editingFinished.disconnect()
+        self.view.spinBoxDBITPhase.setValue(self.det.dbitphase)
+        self.view.spinBoxDBITPhase.editingFinished.connect(self.setDBITPhase)
+
+    def setDBITPhase(self):
+        self.view.spinBoxDBITPhase.editingFinished.disconnect()
+        try:
+            self.det.dbitphase = self.view.spinBoxDBITPhase.value()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "DBit Phase Fail", str(e), QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.spinBoxDBITPhase.editingFinished.connect(self.setDBITPhase)
+        self.getDBITPhase()
+
+    def getDBITPipeline(self):
+        self.view.spinBoxDBITPipeline.editingFinished.disconnect()
+        self.view.spinBoxDBITPipeline.setValue(self.det.dbitpipeline)
+        self.view.spinBoxDBITPipeline.editingFinished.connect(self.setDBITPipeline)
+
+    def setDBITPipeline(self):
+        self.view.spinBoxDBITPipeline.editingFinished.disconnect()
+        try:
+            self.det.dbitpipeline = self.view.spinBoxDBITPipeline.value()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "DBit Pipeline Fail", str(e), QtWidgets.QMessageBox.Ok)
+        # TODO: handling double event exceptions
+        self.view.spinBoxDBITPipeline.editingFinished.connect(self.setDBITPipeline)
+        self.getDBITPipeline()
+
+    def getFileWrite(self):
+        self.view.checkBoxFileWriteRaw.stateChanged.disconnect()
+        self.view.checkBoxFileWriteRaw.setChecked(self.det.fwrite)
+        self.view.checkBoxFileWriteRaw.stateChanged.connect(self.setFileWrite)
+
+    def setFileWrite(self):
+        self.det.fwrite = self.view.checkBoxFileWriteRaw.isChecked()
+        self.getFileWrite()
+
+    def setFileWriteNumpy(self):
+        """
+        slot for saving the data in numpy (.npy) format
+        """
+        self.writeNumpy = not self.writeNumpy
+
+    def getFileName(self):
+        """
+        set the lineEditFilePath input widget to the filename value from the detector
+        """
+
+        self.view.lineEditFileName.editingFinished.disconnect()
+        fileName = self.det.fname
+        self.view.lineEditFileName.setText(fileName)
+        self.outputFileNamePrefix = fileName
+        self.view.lineEditFileName.editingFinished.connect(self.setFileName)
+
+    def setFileName(self):
+        """
+        slot for setting the filename from the widget to the detector
+        """
+        self.det.fname = self.view.lineEditFileName.text()
+        self.getFileName()
+
+    def getFilePath(self):
+        """
+        set the lineEditFilePath input widget to the path value from the detector
+        """
+        self.view.lineEditFilePath.editingFinished.disconnect()
+        path = self.det.fpath
+        self.view.lineEditFilePath.setText(str(path))
+        self.view.lineEditFilePath.editingFinished.connect(self.setFilePath)
+        self.outputDir = path
+
+    def setFilePath(self):
+        """
+        slot to set the directory of the output for the detector
+        """
+        self.det.fpath = Path(self.view.lineEditFilePath.text())
+        self.getFilePath()
+
+    def saveNumpyFile(self, data: np.ndarray | dict[str, np.ndarray], jsonHeader):
+        """
+        save the acquisition data (waveform or image) in the specified path
+        save waveform in multiple .npy files
+        save image as npy file format
+        @note: frame number can be up to 100,000 so the data arrays cannot be fully loaded to memory
+        """
+        if not self.writeNumpy:
+            return
+        if self.outputDir == Path('/'):
+            self.outputDir = Path('./')
+        if self.outputFileNamePrefix == '':
+            self.outputFileNamePrefix = 'run'
+
+        for device in data:
+            if device not in self.numpyFileManagers:
+                tmpPath = self.outputDir / f'{self.outputFileNamePrefix}_{device}_{jsonHeader["fileIndex"]}.npy'
+                self.numpyFileManagers[device] = NumpyFileManager(tmpPath, 'w', data[device].shape, data[device].dtype)
+            self.numpyFileManagers[device].writeOneFrame(data[device])
+
+        if 'progress' in jsonHeader and jsonHeader['progress'] >= 100:
+            # close opened files after saving the last frame
+            self.closeOpenedNumpyFiles(jsonHeader)
+
+    def closeOpenedNumpyFiles(self, jsonHeader):
+        """
+        create npz file for waveform plots and close opened numpy files to persist their data
+        """
+        if not self.writeNumpy:
+            return
+        if len(self.numpyFileManagers) == 0:
+            return
+        oneFile: bool = len(self.numpyFileManagers) == 1
+
+        filepaths = [npw.file.name for device, npw in self.numpyFileManagers.items()]
+        filenames = list(self.numpyFileManagers.keys())
+        ext = 'npy' if oneFile else 'npz'
+        newPath = self.outputDir / f'{self.outputFileNamePrefix}_{jsonHeader["fileIndex"]}.{ext}'
+
+        if not oneFile:
+            # if there is multiple .npy files group them in an .npz file
+            self.numpyFileManagers.clear()
+            NpzFileWriter.zipNpyFiles(newPath, filepaths, filenames, deleteOriginals=True, compressed=False)
+        else:
+            # rename files from "run_ADC0_0.npy" to "run_0.npy" if it is a single .npy file
+            oldPath = self.outputDir / f'{self.outputFileNamePrefix}_' \
+                                       f'{self.numpyFileManagers.popitem()[0]}_{jsonHeader["fileIndex"]}.{ext}'
+            Path.rename(oldPath, newPath)
+
+        self.logger.info(f'Saving numpy data in {newPath} Finished')
+
+    def browseFilePath(self):
+        response = QtWidgets.QFileDialog.getExistingDirectory(parent=self.mainWindow,
+                                                              caption="Select Path to Save Output File",
+                                                              directory=str(Path.cwd()),
+                                                              options=(QtWidgets.QFileDialog.ShowDirsOnly
+                                                                       | QtWidgets.QFileDialog.DontResolveSymlinks)
+                                                              # filter='README (*.md *.ui)'
+                                                              )
+        if response:
+            self.view.lineEditFilePath.setText(response)
+            self.setFilePath()
+
+    def getAccquisitionIndex(self):
+        self.view.spinBoxAcquisitionIndex.editingFinished.disconnect()
+        self.view.spinBoxAcquisitionIndex.setValue(self.det.findex)
+        self.view.spinBoxAcquisitionIndex.editingFinished.connect(self.setAccquisitionIndex)
+
+    def setAccquisitionIndex(self):
+        self.det.findex = self.view.spinBoxAcquisitionIndex.value()
+        self.getAccquisitionIndex()
+
+    def getFrames(self):
+        self.view.spinBoxFrames.editingFinished.disconnect()
+        self.view.spinBoxFrames.setValue(self.det.frames)
+        self.view.spinBoxFrames.editingFinished.connect(self.setFrames)
+
+    def setFrames(self):
+        self.det.frames = self.view.spinBoxFrames.value()
+        self.getFrames()
+
+    def getPeriod(self):
+        self.view.spinBoxPeriod.editingFinished.disconnect()
+        self.view.comboBoxPeriod.currentIndexChanged.disconnect()
+
+        # Converting to right time unit for period
+        tPeriod = self.det.period
+        if tPeriod < 100e-9:
+            self.view.comboBoxPeriod.setCurrentIndex(3)
+            self.view.spinBoxPeriod.setValue(tPeriod / 1e-9)
+        elif tPeriod < 100e-6:
+            self.view.comboBoxPeriod.setCurrentIndex(2)
+            self.view.spinBoxPeriod.setValue(tPeriod / 1e-6)
+        elif tPeriod < 100e-3:
+            self.view.comboBoxPeriod.setCurrentIndex(1)
+            self.view.spinBoxPeriod.setValue(tPeriod / 1e-3)
+        else:
+            self.view.comboBoxPeriod.setCurrentIndex(0)
+            self.view.spinBoxPeriod.setValue(tPeriod)
+
+        self.view.spinBoxPeriod.editingFinished.connect(self.setPeriod)
+        self.view.comboBoxPeriod.currentIndexChanged.connect(self.setPeriod)
+
+    def setPeriod(self):
+        if self.view.comboBoxPeriod.currentIndex() == 0:
+            self.det.period = self.view.spinBoxPeriod.value()
+        elif self.view.comboBoxPeriod.currentIndex() == 1:
+            self.det.period = self.view.spinBoxPeriod.value() * (1e-3)
+        elif self.view.comboBoxPeriod.currentIndex() == 2:
+            self.det.period = self.view.spinBoxPeriod.value() * (1e-6)
+        else:
+            self.det.period = self.view.spinBoxPeriod.value() * (1e-9)
+
+        self.getPeriod()
+
+    def getTriggers(self):
+        self.view.spinBoxTriggers.editingFinished.disconnect()
+        self.view.spinBoxTriggers.setValue(self.det.triggers)
+        self.view.spinBoxTriggers.editingFinished.connect(self.setTriggers)
+
+    def setTriggers(self):
+        self.det.triggers = self.view.spinBoxTriggers.value()
+        self.getTriggers()
+
+    def updateDetectorStatus(self, status):
+        self.mainWindow.labelDetectorStatus.setText(status.name)
+
+    def updateCurrentMeasurement(self):
+        self.mainWindow.labelCurrentMeasurement.setText(str(self.currentMeasurement))
+        # print(f"Meausrement {self.currentMeasurement}")
+
+    def updateCurrentFrame(self, val):
+        self.mainWindow.labelFrameNumber.setText(str(val))
+
+    def updateAcquiredFrames(self, val):
+        self.mainWindow.labelAcquiredFrames.setText(str(val))
+
+    def toggleAcquire(self):
+        if self.mainWindow.pushButtonStart.isChecked():
+            self.plotTab.showPatternViewer(False)
+            self.acquire()
+        else:
+            self.stopAcquisition()
+
+    def toggleStartButton(self, started):
+        if started:
+            self.mainWindow.pushButtonStart.setChecked(True)
+            self.mainWindow.pushButtonStart.setText('Stop')
+        else:
+            self.mainWindow.pushButtonStart.setChecked(False)
+            self.mainWindow.pushButtonStart.setText('Start')
+
+    def stopAcquisition(self):
+        self.det.stop()
+        self.stoppedFlag = True
+
+    def checkBeforeAcquire(self):
+        if self.plotTab.view.radioButtonImage.isChecked():
+            # matterhorn image
+            if self.plotTab.view.comboBoxPlot.currentText() == "Matterhorn":
+                if self.mainWindow.romode not in [readoutMode.TRANSCEIVER_ONLY, readoutMode.DIGITAL_AND_TRANSCEIVER]:
+                    QtWidgets.QMessageBox.warning(self.mainWindow, "Plot type",
+                                                  "To read Matterhorn image, please enable transceiver readout mode",
+                                                  QtWidgets.QMessageBox.Ok)
+                    return False
+                if self.transceiverTab.getTransceiverEnableReg() != Defines.Matterhorn.tranceiverEnable:
+                    QtWidgets.QMessageBox.warning(
+                        self.mainWindow, "Plot type", "To read Matterhorn image, please set transceiver enable to " +
+                        str(Defines.Matterhorn.tranceiverEnable), QtWidgets.QMessageBox.Ok)
+                    return False
+            # moench04 image
+            elif self.plotTab.view.comboBoxPlot.currentText() == "Moench04":
+                if self.mainWindow.romode not in [readoutMode.ANALOG_ONLY, readoutMode.ANALOG_AND_DIGITAL]:
+                    QtWidgets.QMessageBox.warning(self.mainWindow, "Plot type",
+                                                  "To read Moench 04 image, please enable analog readout mode",
+                                                  QtWidgets.QMessageBox.Ok)
+                    return False
+                if self.mainWindow.nADCEnabled != 32:
+                    QtWidgets.QMessageBox.warning(self.mainWindow, "Plot type",
+                                                  "To read Moench 04 image, please enable all 32 adcs",
+                                                  QtWidgets.QMessageBox.Ok)
+                    return False
+        return True
+
+    def acquire(self):
+        if not self.checkBeforeAcquire():
+            self.toggleStartButton(False)
+            return
+
+        self.stoppedFlag = False
+        self.toggleStartButton(True)
+        self.currentMeasurement = 0
+
+        # ensure zmq streaming is enabled
+        if self.det.rx_zmqstream == 0:
+            self.det.rx_zmqstream = 1
+
+        # some functions that must be updated for local values
+        self.getTransceiver()
+        self.getAnalog()
+        self.getDigital()
+        self.getReadout()
+        self.signalsTab.getDBitOffset()
+        self.adcTab.getADCEnableReg()
+        self.signalsTab.updateDigitalBitEnable()
+        self.transceiverTab.getTransceiverEnableReg()
+
+        self.startMeasurement()
+
+    def startMeasurement(self):
+        try:
+            self.updateCurrentMeasurement()
+            self.updateCurrentFrame(0)
+            self.updateAcquiredFrames(0)
+            self.mainWindow.progressBar.setValue(0)
+
+            self.det.rx_start()
+            self.det.start()
+            time.sleep(Defines.Time_Wait_For_Packets_ms)
+            self.checkEndofAcquisition()
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Acquire Fail", str(e), QtWidgets.QMessageBox.Ok)
+            self.checkEndofAcquisition()
+
+    def checkEndofAcquisition(self):
+        caught = self.det.rx_framescaught[0]
+        self.updateAcquiredFrames(caught)
+        status = self.det.getDetectorStatus()[0]
+        self.updateDetectorStatus(status)
+        measurementDone = False
+        # print(f'status:{status}')
+        match status:
+            case runStatus.RUNNING:
+                pass
+            case runStatus.WAITING:
+                pass
+            case runStatus.TRANSMITTING:
+                pass
+            case _:
+                measurementDone = True
+
+        # check for 500ms for no packets
+        # needs more time for 1g streaming out done
+        if measurementDone:
+            time.sleep(Defines.Time_Wait_For_Packets_ms)
+            if self.det.rx_framescaught[0] != caught:
+                measurementDone = False
+
+        numMeasurments = self.view.spinBoxMeasurements.value()
+        if measurementDone:
+
+            if self.det.rx_status == runStatus.RUNNING:
+                self.det.rx_stop()
+            if self.view.checkBoxFileWriteRaw.isChecked() or self.view.checkBoxFileWriteNumpy.isChecked():
+                self.view.spinBoxAcquisitionIndex.stepUp()
+                self.setAccquisitionIndex()
+            # next measurement
+            self.currentMeasurement += 1
+            if self.currentMeasurement < numMeasurments and not self.stoppedFlag:
+                self.startMeasurement()
+            else:
+                self.mainWindow.statusTimer.stop()
+                self.toggleStartButton(False)
+        else:
+            self.mainWindow.statusTimer.start(Defines.Time_Status_Refresh_ms)
+
+    # For other functios
+    # Reading data from zmq and decoding it
+    def read_zmq(self):
+        # print("in readzmq")
+        try:
+            msg = self.socket.recv_multipart(flags=zmq.NOBLOCK)
+            if len(msg) != 2:
+                if len(msg) != 1:
+                    print(f'len(msg) = {len(msg)}')
+                return
+            header, data = msg
+            jsonHeader = json.loads(header)
+            self.mainWindow.progressBar.setValue(int(jsonHeader['progress']))
+            self.updateCurrentFrame(jsonHeader['frameIndex'])
+
+            # waveform
+            waveforms = {}
+            if self.plotTab.view.radioButtonWaveform.isChecked():
+                # analog
+                if self.mainWindow.romode.value in [0, 2]:
+                    waveforms |= self.adcTab.processWaveformData(data, self.asamples)
+                # digital
+                if self.mainWindow.romode.value in [1, 2, 4]:
+                    waveforms |= self.signalsTab.processWaveformData(data, self.asamples, self.dsamples)
+                # transceiver
+                if self.mainWindow.romode.value in [3, 4]:
+                    waveforms |= self.transceiverTab.processWaveformData(data, self.dsamples)
+            # image
+            else:
+                # analog
+                if self.mainWindow.romode.value in [0, 2]:
+                    waveforms['analog_image'] = self.adcTab.processImageData(data, self.asamples)
+                # transceiver
+                if self.mainWindow.romode.value in [3, 4]:
+                    waveforms['tx_image'] = self.transceiverTab.processImageData(data, self.dsamples)
+
+            self.saveNumpyFile(waveforms, jsonHeader)
+        except zmq.ZMQError:
+            pass
+        except Exception:
+            self.logger.exception("Exception caught")
+
+    def setup_zmq(self):
+        self.det.rx_zmqstream = 1
+        self.zmqIp = self.det.zmqip
+        self.zmqport = self.det.zmqport
+        self.zmq_stream = self.det.rx_zmqstream
+
+        self.context = zmq.Context()
+        self.socket = self.context.socket(zmq.SUB)
+        self.socket.connect(f"tcp://{self.zmqIp}:{self.zmqport}")
+        self.socket.subscribe("")
+
+    def saveParameters(self) -> list[str]:
+        if self.det.type == detectorType.CHIPTESTBOARD:
+            return [
+                f'romode {self.view.comboBoxROMode.currentText().lower()}',
+                f'runclk {self.view.spinBoxRunF.value()}',
+                f'adcclk {self.view.spinBoxADCF.value()}',
+                f'adcphase {self.view.spinBoxADCPhase.value()}',
+                f'adcpipeline {self.view.spinBoxADCPipeline.value()}',
+                f'dbitclk {self.view.spinBoxDBITF.value()}',
+                f'dbitphase {self.view.spinBoxDBITPhase.value()}',
+                f'dbitpipeline {self.view.spinBoxDBITPipeline.value()}',
+                f'fwrite {int(self.view.checkBoxFileWriteRaw.isChecked())}',
+                f'fname {self.view.lineEditFileName.text()}',
+                f'fpath {self.view.lineEditFilePath.text()}',
+                f'findex {self.view.spinBoxAcquisitionIndex.value()}',
+                f'frames {self.view.spinBoxFrames.value()}',
+                f'triggers {self.view.spinBoxTriggers.value()}',
+                f'period {self.view.spinBoxPeriod.value()} {self.view.comboBoxPeriod.currentText().lower()}',
+                f'asamples {self.view.spinBoxAnalog.value()}',
+                f'dsamples {self.view.spinBoxDigital.value()}',
+                f'tsamples {self.view.spinBoxTransceiver.value()}',
+            ]
+        else:
+            return [
+                f'romode {self.view.comboBoxROMode.currentText().lower()}',
+                f'fwrite {int(self.view.checkBoxFileWriteRaw.isChecked())}',
+                f'fname {self.view.lineEditFileName.text()}',
+                f'fpath {self.view.lineEditFilePath.text()}',
+                f'findex {self.view.spinBoxAcquisitionIndex.value()}',
+                f'frames {self.view.spinBoxFrames.value()}',
+                f'triggers {self.view.spinBoxTriggers.value()}',
+                f'period {self.view.spinBoxPeriod.value()} {self.view.comboBoxPeriod.currentText().lower()}',
+                f'asamples {self.view.spinBoxAnalog.value()}',
+                f'dsamples {self.view.spinBoxDigital.value()}',
+                f'tsamples {self.view.spinBoxTransceiver.value()}',
+            ] 
+

pyctbgui/pyctbgui/services/DACs.py

@@ -0,0 +1,183 @@
+from functools import partial
+from pathlib import Path
+
+from PyQt5 import QtWidgets, uic
+from pyctbgui.utils.defines import Defines
+
+from slsdet import dacIndex, detectorType
+
+
+class DacTab(QtWidgets.QWidget):
+
+    def __init__(self, parent):
+        super().__init__(parent)
+        uic.loadUi(Path(__file__).parent.parent / 'ui' / "Dacs.ui", parent)
+        self.view = parent
+
+    def setup_ui(self):
+        for i in range(Defines.dac.count):
+            dac = getattr(dacIndex, f"DAC_{i}")
+            getattr(self.view, f"spinBoxDAC{i}").setValue(self.det.getDAC(dac)[0])
+
+        if self.det.type == detectorType.XILINX_CHIPTESTBOARD:
+            self.view.checkBoxHighVoltage.setDisabled(True)
+            self.view.spinBoxHighVoltage.setDisabled(True)
+            self.view.labelHighVoltage.setDisabled(True)
+            self.view.labelADCVppDacName.setDisabled(True)
+            self.view.labelADCVpp.setDisabled(True)
+            self.view.comboBoxADCVpp.setDisabled(True)
+        elif self.det.highvoltage == 0:
+            self.view.spinBoxHighVoltage.setDisabled(True)
+            self.view.checkBoxHighVoltage.setChecked(False)
+
+    def connect_ui(self):
+        n_dacs = len(self.det.daclist)
+        for i in range(n_dacs):
+            getattr(self.view, f"spinBoxDAC{i}").editingFinished.connect(partial(self.setDAC, i))
+            getattr(self.view, f"checkBoxDAC{i}").stateChanged.connect(partial(self.setDACTristate, i))
+            getattr(self.view, f"checkBoxDAC{i}mV").stateChanged.connect(partial(self.getDAC, i))
+
+        if self.view.comboBoxADCVpp.isEnabled():
+            self.view.comboBoxADCVpp.currentIndexChanged.connect(self.setADCVpp)
+        if self.view.checkBoxHighVoltage.isEnabled():
+            self.view.spinBoxHighVoltage.editingFinished.connect(self.setHighVoltage)
+            self.view.checkBoxHighVoltage.stateChanged.connect(self.setHighVoltage)
+
+    def refresh(self):
+        self.updateDACNames()
+        for i in range(Defines.dac.count):
+            self.getDACTristate(i)
+            self.getDAC(i)
+
+        if self.view.comboBoxADCVpp.isEnabled():
+            self.getADCVpp()
+        if self.view.checkBoxHighVoltage.isEnabled():
+            self.getHighVoltage()
+
+    def updateDACNames(self):
+        for i, name in enumerate(self.det.getDacNames()):
+            getattr(self.view, f"checkBoxDAC{i}").setText(name)
+
+    def getDACTristate(self, i):
+        checkBox = getattr(self.view, f"checkBoxDAC{i}")
+        dac = getattr(dacIndex, f"DAC_{i}")
+        checkBox.stateChanged.disconnect()
+        if (self.det.getDAC(dac)[0]) == -100:
+            checkBox.setChecked(False)
+        else:
+            checkBox.setChecked(True)
+        checkBox.stateChanged.connect(partial(self.setDACTristate, i))
+
+    def setDACTristate(self, i):
+        checkBox = getattr(self.view, f"checkBoxDAC{i}")
+        if not checkBox.isChecked():
+            self.setDAC(i)
+        self.getDAC(i)
+
+    def getDAC(self, i):
+        checkBox = getattr(self.view, f"checkBoxDAC{i}")
+        checkBoxmV = getattr(self.view, f"checkBoxDAC{i}mV")
+        spinBox = getattr(self.view, f"spinBoxDAC{i}")
+        label = getattr(self.view, f"labelDAC{i}")
+        dac = getattr(dacIndex, f"DAC_{i}")
+
+        checkBox.stateChanged.disconnect()
+        checkBoxmV.stateChanged.disconnect()
+        spinBox.editingFinished.disconnect()
+
+        # do not uncheck automatically
+        if self.det.getDAC(dac)[0] != -100:
+            checkBox.setChecked(True)
+
+        if checkBox.isChecked():
+            spinBox.setEnabled(True)
+            checkBoxmV.setEnabled(True)
+        else:
+            spinBox.setDisabled(True)
+            checkBoxmV.setDisabled(True)
+
+        in_mv = checkBoxmV.isChecked() and checkBox.isChecked()
+        dacValue = self.det.getDAC(dac, in_mv)[0]
+        unit = "mV" if in_mv else ""
+        label.setText(f"{dacValue} {unit}")
+        spinBox.setValue(dacValue)
+
+        checkBox.stateChanged.connect(partial(self.setDACTristate, i))
+        checkBoxmV.stateChanged.connect(partial(self.getDAC, i))
+        spinBox.editingFinished.connect(partial(self.setDAC, i))
+
+    def setDAC(self, i):
+        checkBoxDac = getattr(self.view, f"checkBoxDAC{i}")
+        checkBoxmV = getattr(self.view, f"checkBoxDAC{i}mV")
+        spinBox = getattr(self.view, f"spinBoxDAC{i}")
+        dac = getattr(dacIndex, f"DAC_{i}")
+
+        value = -100
+        if checkBoxDac.isChecked():
+            value = spinBox.value()
+        in_mV = checkBoxDac.isChecked() and checkBoxmV.isChecked()
+        self.det.setDAC(dac, value, in_mV)
+        self.getDAC(i)
+
+    def getADCVpp(self):
+        retval = self.det.adcvpp
+        self.view.labelADCVpp.setText(f'Mode: {str(retval)}')
+
+        self.view.comboBoxADCVpp.currentIndexChanged.disconnect()
+        self.view.comboBoxADCVpp.setCurrentIndex(retval)
+        self.view.comboBoxADCVpp.currentIndexChanged.connect(self.setADCVpp)
+
+    def setADCVpp(self):
+        self.det.adcvpp = self.view.comboBoxADCVpp.currentIndex()
+        self.getADCVpp()
+
+    def getHighVoltage(self):
+        retval = self.det.highvoltage
+        self.view.labelHighVoltage.setText(str(retval))
+
+        self.view.spinBoxHighVoltage.editingFinished.disconnect()
+        self.view.checkBoxHighVoltage.stateChanged.disconnect()
+
+        self.view.spinBoxHighVoltage.setValue(retval)
+        if retval:
+            self.view.checkBoxHighVoltage.setChecked(True)
+        if self.view.checkBoxHighVoltage.isChecked():
+            self.view.spinBoxHighVoltage.setEnabled(True)
+
+        self.view.spinBoxHighVoltage.editingFinished.connect(self.setHighVoltage)
+        self.view.checkBoxHighVoltage.stateChanged.connect(self.setHighVoltage)
+
+    def setHighVoltage(self):
+        value = 0
+        if self.view.checkBoxHighVoltage.isChecked():
+            value = self.view.spinBoxHighVoltage.value()
+        try:
+            self.det.highvoltage = value
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "High Voltage Fail", str(e), QtWidgets.QMessageBox.Ok)
+            pass
+        self.getHighVoltage()
+
+    def saveParameters(self) -> list:
+        """
+        save parameters for the current tab
+        @return: list of commands
+        """
+        commands = []
+        for i in range(Defines.dac.count):
+            # if checkbox disabled put -100 in dac units
+            enabled = getattr(self.view, f"checkBoxDAC{i}").isChecked()
+            if not enabled:
+                commands.append(f"dac {i} -100")
+            # else put the value in dac or mV units
+            else:
+                value = getattr(self.view, f"spinBoxDAC{i}").value()
+                inMV = getattr(self.view, f"checkBoxDAC{i}mV").isChecked()
+                unit = " mV" if inMV else ""
+                commands.append(f"dac {i} {value}{unit}")
+
+        if self.view.comboBoxADCVpp.isEnabled():
+            commands.append(f"adcvpp {self.view.comboBoxADCVpp.currentText()} mV")
+        if self.view.checkBoxHighVoltage.isEnabled():
+            commands.append(f"highvoltage {self.view.spinBoxHighVoltage.value()}")
+        return commands

pyctbgui/pyctbgui/services/Pattern.py

@@ -0,0 +1,456 @@
+import os
+from functools import partial
+from pathlib import Path
+
+from PyQt5 import QtWidgets, uic
+import matplotlib.pyplot as plt
+from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
+from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolbar
+
+from pyctbgui.utils.defines import Defines
+from pyctbgui.utils.plotPattern import PlotPattern
+
+
+class PatternTab(QtWidgets.QWidget):
+
+    def __init__(self, parent):
+        super().__init__(parent)
+        uic.loadUi(Path(__file__).parent.parent / 'ui' / "pattern.ui", parent)
+        self.view = parent
+        self.mainWindow = None
+        self.det = None
+        self.plotTab = None
+
+    def setup_ui(self):
+        # Pattern Tab
+        self.plotTab = self.mainWindow.plotTab
+
+        for i in range(len(Defines.Colors)):
+            self.view.comboBoxPatColor.addItem(Defines.Colors[i])
+            self.view.comboBoxPatWaitColor.addItem(Defines.Colors[i])
+            self.view.comboBoxPatLoopColor.addItem(Defines.Colors[i])
+        for i in range(len(Defines.LineStyles)):
+            self.view.comboBoxPatWaitLineStyle.addItem(Defines.LineStyles[i])
+            self.view.comboBoxPatLoopLineStyle.addItem(Defines.LineStyles[i])
+        self.updateDefaultPatViewerParameters()
+        self.view.comboBoxPatColorSelect.setCurrentIndex(0)
+        self.view.comboBoxPatWait.setCurrentIndex(0)
+        self.view.comboBoxPatLoop.setCurrentIndex(0)
+        self.view.spinBoxPatClockSpacing.setValue(self.clock_vertical_lines_spacing)
+        self.view.checkBoxPatShowClockNumber.setChecked(self.show_clocks_number)
+        self.view.doubleSpinBoxLineWidth.setValue(self.line_width)
+        self.view.lineEditPatternFile.setText(self.det.patfname[0])
+        # rest gets updated after connecting to slots
+        # pattern viewer plot area
+        self.figure, self.ax = plt.subplots()
+        self.canvas = FigureCanvas(self.figure)
+        self.toolbar = NavigationToolbar(self.canvas, self.view)
+        self.mainWindow.gridLayoutPatternViewer.addWidget(self.toolbar)
+        self.mainWindow.gridLayoutPatternViewer.addWidget(self.canvas)
+        self.figure.clear()
+
+    def connect_ui(self):
+        # For Pattern Tab
+        self.view.lineEditStartAddress.editingFinished.connect(self.setPatLimitAddress)
+        self.view.lineEditStopAddress.editingFinished.connect(self.setPatLimitAddress)
+        for i in range(Defines.pattern.loops_count):
+            getattr(self.view,
+                    f"lineEditLoop{i}Start").editingFinished.connect(partial(self.setPatLoopStartStopAddress, i))
+            getattr(self.view,
+                    f"lineEditLoop{i}Stop").editingFinished.connect(partial(self.setPatLoopStartStopAddress, i))
+            getattr(self.view, f"lineEditLoop{i}Wait").editingFinished.connect(partial(self.setPatLoopWaitAddress, i))
+            getattr(self.view,
+                    f"spinBoxLoop{i}Repetition").editingFinished.connect(partial(self.setPatLoopRepetition, i))
+            getattr(self.view, f"spinBoxLoop{i}WaitTime").editingFinished.connect(partial(self.setPatLoopWaitTime, i))
+        self.view.pushButtonCompiler.clicked.connect(self.setCompiler)
+        self.view.pushButtonUncompiled.clicked.connect(self.setUncompiledPatternFile)
+        self.view.pushButtonPatternFile.clicked.connect(self.setPatternFile)
+        self.view.pushButtonLoadPattern.clicked.connect(self.loadPattern)
+
+        self.view.comboBoxPatColorSelect.currentIndexChanged.connect(self.getPatViewerColors)
+        self.view.comboBoxPatWait.currentIndexChanged.connect(self.getPatViewerWaitParameters)
+        self.view.comboBoxPatLoop.currentIndexChanged.connect(self.getPatViewerLoopParameters)
+
+        self.view.comboBoxPatColor.currentIndexChanged.connect(self.updatePatViewerParameters)
+        self.view.comboBoxPatWaitColor.currentIndexChanged.connect(self.updatePatViewerParameters)
+        self.view.comboBoxPatLoopColor.currentIndexChanged.connect(self.updatePatViewerParameters)
+        self.view.comboBoxPatWaitLineStyle.currentIndexChanged.connect(self.updatePatViewerParameters)
+        self.view.comboBoxPatLoopLineStyle.currentIndexChanged.connect(self.updatePatViewerParameters)
+        self.view.doubleSpinBoxWaitAlpha.editingFinished.connect(self.updatePatViewerParameters)
+        self.view.doubleSpinBoxLoopAlpha.editingFinished.connect(self.updatePatViewerParameters)
+        self.view.doubleSpinBoxWaitAlphaRect.editingFinished.connect(self.updatePatViewerParameters)
+        self.view.doubleSpinBoxLoopAlphaRect.editingFinished.connect(self.updatePatViewerParameters)
+        self.view.spinBoxPatClockSpacing.editingFinished.connect(self.updatePatViewerParameters)
+        self.view.checkBoxPatShowClockNumber.stateChanged.connect(self.updatePatViewerParameters)
+        self.view.doubleSpinBoxLineWidth.editingFinished.connect(self.updatePatViewerParameters)
+        self.view.pushButtonViewPattern.clicked.connect(self.viewPattern)
+
+    def refresh(self):
+        self.getPatLimitAddress()
+        for i in range(Defines.pattern.loops_count):
+            self.getPatLoopStartStopAddress(i)
+            self.getPatLoopWaitAddress(i)
+            self.getPatLoopRepetition(i)
+            self.getPatLoopWaitTime(i)
+
+    # Pattern Tab functions
+
+    def getPatLimitAddress(self):
+        retval = self.det.patlimits
+        self.view.lineEditStartAddress.editingFinished.disconnect()
+        self.view.lineEditStopAddress.editingFinished.disconnect()
+        self.view.lineEditStartAddress.setText("0x{:04x}".format(retval[0]))
+        self.view.lineEditStopAddress.setText("0x{:04x}".format(retval[1]))
+        self.view.lineEditStartAddress.editingFinished.connect(self.setPatLimitAddress)
+        self.view.lineEditStopAddress.editingFinished.connect(self.setPatLimitAddress)
+
+    def setPatLimitAddress(self):
+        self.view.lineEditStartAddress.editingFinished.disconnect()
+        self.view.lineEditStopAddress.editingFinished.disconnect()
+        try:
+            start = int(self.view.lineEditStartAddress.text(), 16)
+            stop = int(self.view.lineEditStopAddress.text(), 16)
+            self.det.patlimits = [start, stop]
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Pattern Limit Address Fail", str(e),
+                                          QtWidgets.QMessageBox.Ok)
+            pass
+        # TODO: handling double event exceptions
+        self.view.lineEditStartAddress.editingFinished.connect(self.setPatLimitAddress)
+        self.view.lineEditStopAddress.editingFinished.connect(self.setPatLimitAddress)
+        self.getPatLimitAddress()
+
+    def getPatLoopStartStopAddress(self, level):
+        retval = self.det.patloop[level]
+        lineEditStart = getattr(self.view, f"lineEditLoop{level}Start")
+        lineEditStop = getattr(self.view, f"lineEditLoop{level}Stop")
+        lineEditStart.editingFinished.disconnect()
+        lineEditStop.editingFinished.disconnect()
+        lineEditStart.setText("0x{:04x}".format(retval[0]))
+        lineEditStop.setText("0x{:04x}".format(retval[1]))
+        lineEditStart.editingFinished.connect(partial(self.setPatLoopStartStopAddress, level))
+        lineEditStop.editingFinished.connect(partial(self.setPatLoopStartStopAddress, level))
+
+    def setPatLoopStartStopAddress(self, level):
+        lineEditStart = getattr(self.view, f"lineEditLoop{level}Start")
+        lineEditStop = getattr(self.view, f"lineEditLoop{level}Stop")
+        lineEditStart.editingFinished.disconnect()
+        lineEditStop.editingFinished.disconnect()
+        try:
+            start = int(lineEditStart.text(), 16)
+            stop = int(lineEditStop.text(), 16)
+            self.det.patloop[level] = [start, stop]
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Pattern Loop Start Stop Address Fail", str(e),
+                                          QtWidgets.QMessageBox.Ok)
+            pass
+        # TODO: handling double event exceptions
+        lineEditStart.editingFinished.connect(partial(self.setPatLoopStartStopAddress, level))
+        lineEditStop.editingFinished.connect(partial(self.setPatLoopStartStopAddress, level))
+        self.getPatLoopStartStopAddress(level)
+
+    def getPatLoopWaitAddress(self, level):
+        retval = self.det.patwait[level]
+        lineEdit = getattr(self.view, f"lineEditLoop{level}Wait")
+        lineEdit.editingFinished.disconnect()
+        lineEdit.setText("0x{:04x}".format(retval))
+        lineEdit.editingFinished.connect(partial(self.setPatLoopWaitAddress, level))
+
+    def setPatLoopWaitAddress(self, level):
+        lineEdit = getattr(self.view, f"lineEditLoop{level}Wait")
+        lineEdit.editingFinished.disconnect()
+        try:
+            addr = int(lineEdit.text(), 16)
+            self.det.patwait[level] = addr
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Pattern Wait Address Fail", str(e),
+                                          QtWidgets.QMessageBox.Ok)
+            pass
+        # TODO: handling double event exceptions
+        lineEdit.editingFinished.connect(partial(self.setPatLoopWaitAddress, level))
+        self.getPatLoopWaitAddress(level)
+
+    def getPatLoopRepetition(self, level):
+        retval = self.det.patnloop[level]
+        spinBox = getattr(self.view, f"spinBoxLoop{level}Repetition")
+        spinBox.editingFinished.disconnect()
+        spinBox.setValue(retval)
+        spinBox.editingFinished.connect(partial(self.setPatLoopRepetition, level))
+
+    def setPatLoopRepetition(self, level):
+        spinBox = getattr(self.view, f"spinBoxLoop{level}Repetition")
+        self.det.patnloop[level] = spinBox.value()
+        self.getPatLoopRepetition(level)
+
+    def getPatLoopWaitTime(self, level):
+        retval = self.det.patwaittime[level]
+        spinBox = getattr(self.view, f"spinBoxLoop{level}WaitTime")
+        spinBox.editingFinished.disconnect()
+        spinBox.setValue(retval)
+        spinBox.editingFinished.connect(partial(self.setPatLoopWaitTime, level))
+
+    def setPatLoopWaitTime(self, level):
+        spinBox = getattr(self.view, f"spinBoxLoop{level}WaitTime")
+        self.det.patwaittime[level] = spinBox.value()
+        self.getPatLoopWaitTime(level)
+
+    def setCompiler(self):
+        response = QtWidgets.QFileDialog.getOpenFileName(
+            parent=self.mainWindow,
+            caption="Select a compiler file",
+            directory=str(Path.cwd()),
+            # filter='README (*.md *.ui)'
+        )
+        if response[0]:
+            self.view.lineEditCompiler.setText(response[0])
+
+    def setUncompiledPatternFile(self):
+        filt = 'Pattern code(*.py *.c)'
+        folder = Path(self.det.patfname[0]).parent
+        if not folder:
+            folder = Path.cwd()
+        response = QtWidgets.QFileDialog.getOpenFileName(parent=self.mainWindow,
+                                                         caption="Select an uncompiled pattern file",
+                                                         directory=str(folder),
+                                                         filter=filt)
+        if response[0]:
+            self.view.lineEditUncompiled.setText(response[0])
+
+    def setPatternFile(self):
+        filt = 'Pattern file(*.pyat *.pat)'
+        folder = Path(self.det.patfname[0]).parent
+        if not folder:
+            folder = Path.cwd()
+        response = QtWidgets.QFileDialog.getOpenFileName(parent=self.mainWindow,
+                                                         caption="Select a compiled pattern file",
+                                                         directory=str(folder),
+                                                         filter=filt)
+        if response[0]:
+            self.view.lineEditPatternFile.setText(response[0])
+
+    def compilePattern(self):
+        compilerFile = self.view.lineEditCompiler.text()
+        if not compilerFile:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Compile Fail", "No compiler selected. Please select one.",
+                                          QtWidgets.QMessageBox.Ok)
+            return ""
+
+        pattern_file = self.view.lineEditUncompiled.text()
+
+        # if old compile file exists, backup and remove to ensure old copy not loaded
+        oldFile = Path(pattern_file + 'at')
+        if oldFile.is_file():
+            print("Moving old compiled pattern file to _bck")
+            exit_status = os.system('mv ' + str(oldFile) + ' ' + str(oldFile) + '_bkup')
+            if exit_status != 0:
+                retval = QtWidgets.QMessageBox.question(
+                    self.mainWindow, "Backup Fail",
+                    "Could not make a backup of old compiled code. Proceed anyway to compile and overwrite?",
+                    QtWidgets.QMessageBox.Yes, QtWidgets.QMessageBox.No)
+                if retval == QtWidgets.QMessageBox.No:
+                    return ""
+
+        compileCommand = compilerFile + ' ' + pattern_file
+        print(compileCommand)
+        print("Compiling pattern code to .pat file")
+        exit_status = os.system(compileCommand)
+        if exit_status != 0:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Compile Fail", "Could not compile pattern.",
+                                          QtWidgets.QMessageBox.Ok)
+            return ""
+        pattern_file += 'at'
+
+        return pattern_file
+
+    def getCompiledPatFname(self):
+        if self.view.checkBoxCompile.isChecked():
+            pattern_file = self.compilePattern()
+        # pat name from pattern field
+        else:
+            pattern_file = self.view.lineEditPatternFile.text()
+            if not pattern_file:
+                QtWidgets.QMessageBox.warning(self.mainWindow, "Pattern Fail",
+                                              "No pattern file selected. Please select one.", QtWidgets.QMessageBox.Ok)
+                return ""
+        return pattern_file
+
+    def loadPattern(self):
+        pattern_file = self.getCompiledPatFname()
+        if not pattern_file:
+            return
+        # load pattern
+        self.det.pattern = pattern_file
+        self.view.lineEditPatternFile.setText(self.det.patfname[0])
+
+    def getPatViewerColors(self):
+        colorLevel = self.view.comboBoxPatColorSelect.currentIndex()
+        color = self.colors_plot[colorLevel]
+        self.view.comboBoxPatColor.currentIndexChanged.disconnect()
+        self.view.comboBoxPatColor.setCurrentIndex(Defines.Colors.index(color))
+        self.view.comboBoxPatColor.currentIndexChanged.connect(self.updatePatViewerParameters)
+
+    def getPatViewerWaitParameters(self):
+        waitLevel = self.view.comboBoxPatWait.currentIndex()
+        color = self.colors_wait[waitLevel]
+        line_style = self.linestyles_wait[waitLevel]
+        alpha = self.alpha_wait[waitLevel]
+        alpha_rect = self.alpha_wait_rect[waitLevel]
+
+        self.view.comboBoxPatWaitColor.currentIndexChanged.disconnect()
+        self.view.comboBoxPatWaitLineStyle.currentIndexChanged.disconnect()
+        self.view.doubleSpinBoxWaitAlpha.editingFinished.disconnect()
+        self.view.doubleSpinBoxWaitAlphaRect.editingFinished.disconnect()
+
+        self.view.comboBoxPatWaitColor.setCurrentIndex(Defines.Colors.index(color))
+        self.view.comboBoxPatWaitLineStyle.setCurrentIndex(Defines.LineStyles.index(line_style))
+        self.view.doubleSpinBoxWaitAlpha.setValue(alpha)
+        self.view.doubleSpinBoxWaitAlphaRect.setValue(alpha_rect)
+
+        self.view.comboBoxPatWaitColor.currentIndexChanged.connect(self.updatePatViewerParameters)
+        self.view.comboBoxPatWaitLineStyle.currentIndexChanged.connect(self.updatePatViewerParameters)
+        self.view.doubleSpinBoxWaitAlpha.editingFinished.connect(self.updatePatViewerParameters)
+        self.view.doubleSpinBoxWaitAlphaRect.editingFinished.connect(self.updatePatViewerParameters)
+
+    def getPatViewerLoopParameters(self):
+        loopLevel = self.view.comboBoxPatLoop.currentIndex()
+        color = self.colors_loop[loopLevel]
+        line_style = self.linestyles_loop[loopLevel]
+        alpha = self.alpha_loop[loopLevel]
+        alpha_rect = self.alpha_loop_rect[loopLevel]
+
+        self.view.comboBoxPatLoopColor.currentIndexChanged.disconnect()
+        self.view.comboBoxPatLoopLineStyle.currentIndexChanged.disconnect()
+        self.view.doubleSpinBoxLoopAlpha.editingFinished.disconnect()
+        self.view.doubleSpinBoxLoopAlphaRect.editingFinished.disconnect()
+
+        self.view.comboBoxPatLoopColor.setCurrentIndex(Defines.Colors.index(color))
+        self.view.comboBoxPatLoopLineStyle.setCurrentIndex(Defines.LineStyles.index(line_style))
+        self.view.doubleSpinBoxLoopAlpha.setValue(alpha)
+        self.view.doubleSpinBoxLoopAlphaRect.setValue(alpha_rect)
+
+        self.view.comboBoxPatLoopColor.currentIndexChanged.connect(self.updatePatViewerParameters)
+        self.view.comboBoxPatLoopLineStyle.currentIndexChanged.connect(self.updatePatViewerParameters)
+        self.view.doubleSpinBoxLoopAlpha.editingFinished.connect(self.updatePatViewerParameters)
+        self.view.doubleSpinBoxLoopAlphaRect.editingFinished.connect(self.updatePatViewerParameters)
+
+    # only at start up
+    def updateDefaultPatViewerParameters(self):
+        self.colors_plot = Defines.Colors_plot.copy()
+        self.colors_wait = Defines.Colors_wait.copy()
+        self.linestyles_wait = Defines.Linestyles_wait.copy()
+        self.alpha_wait = Defines.Alpha_wait.copy()
+        self.alpha_wait_rect = Defines.Alpha_wait_rect.copy()
+        self.colors_loop = Defines.Colors_loop.copy()
+        self.linestyles_loop = Defines.Linestyles_loop.copy()
+        self.alpha_loop = Defines.Alpha_loop.copy()
+        self.alpha_loop_rect = Defines.Alpha_loop_rect.copy()
+        self.clock_vertical_lines_spacing = Defines.Clock_vertical_lines_spacing
+        self.show_clocks_number = Defines.Show_clocks_number
+        self.line_width = Defines.Line_width
+
+        # print('default')
+        # self.printPatViewerParameters()
+
+    def updatePatViewerParameters(self):
+        colorLevel = self.view.comboBoxPatColorSelect.currentIndex()
+        color = self.view.comboBoxPatColor.currentIndex()
+        # self.colors_plot[colorLevel] = f'tab:{Defines.Colors[color].lower()}'
+        self.colors_plot[colorLevel] = Defines.Colors[color]
+
+        waitLevel = self.view.comboBoxPatWait.currentIndex()
+        color = self.view.comboBoxPatWaitColor.currentIndex()
+        line_style = self.view.comboBoxPatWaitLineStyle.currentIndex()
+        alpha = self.view.doubleSpinBoxWaitAlpha.value()
+        alpha_rect = self.view.doubleSpinBoxWaitAlphaRect.value()
+
+        self.colors_wait[waitLevel] = Defines.Colors[color]
+        self.linestyles_wait[waitLevel] = Defines.LineStyles[line_style]
+        self.alpha_wait[waitLevel] = alpha
+        self.alpha_wait_rect[waitLevel] = alpha_rect
+
+        loopLevel = self.view.comboBoxPatLoop.currentIndex()
+        color = self.view.comboBoxPatLoopColor.currentIndex()
+        line_style = self.view.comboBoxPatLoopLineStyle.currentIndex()
+        alpha = self.view.doubleSpinBoxLoopAlpha.value()
+        alpha_rect = self.view.doubleSpinBoxLoopAlphaRect.value()
+
+        self.colors_loop[loopLevel] = Defines.Colors[color]
+        self.linestyles_loop[loopLevel] = Defines.LineStyles[line_style]
+        self.alpha_loop[loopLevel] = alpha
+        self.alpha_loop_rect[loopLevel] = alpha_rect
+
+        self.clock_vertical_lines_spacing = self.view.spinBoxPatClockSpacing.value()
+        self.show_clocks_number = self.view.checkBoxPatShowClockNumber.isChecked()
+        self.line_width = self.view.doubleSpinBoxLineWidth.value()
+
+        # for debugging
+        # self.printPatViewerParameters()
+
+    def printPatViewerParameters(self):
+        print('Pattern Viewer Parameters:')
+        print(f'\tcolor1: {self.colors_plot[0]}, color2: {self.colors_plot[1]}')
+        print(f"\twait color: {self.colors_wait}")
+        print(f"\twait linestyles: {self.linestyles_wait}")
+        print(f"\twait alpha: {self.alpha_wait}")
+        print(f"\twait alpha rect: {self.alpha_wait_rect}")
+        print(f"\tloop color: {self.colors_loop}")
+        print(f"\tloop linestyles: {self.linestyles_loop}")
+        print(f"\tloop alpha: {self.alpha_loop}")
+        print(f"\tloop alpha rect: {self.alpha_loop_rect}")
+        print(f'\tclock vertical lines spacing: {self.clock_vertical_lines_spacing}')
+        print(f'\tshow clocks number: {self.show_clocks_number}')
+        print(f'\tline width: {self.line_width}')
+        print('\n')
+
+    def viewPattern(self):
+        self.plotTab.showPatternViewer(True)
+        pattern_file = self.getCompiledPatFname()
+        if not pattern_file:
+            return
+
+        signalNames = self.det.getSignalNames()
+        p = PlotPattern(
+            pattern_file,
+            signalNames,
+            self.colors_plot,
+            self.colors_wait,
+            self.linestyles_wait,
+            self.alpha_wait,
+            self.alpha_wait_rect,
+            self.colors_loop,
+            self.linestyles_loop,
+            self.alpha_loop,
+            self.alpha_loop_rect,
+            self.clock_vertical_lines_spacing,
+            self.show_clocks_number,
+            self.line_width,
+        )
+
+        plt.close(self.figure)
+        self.mainWindow.gridLayoutPatternViewer.removeWidget(self.canvas)
+        self.canvas.close()
+        self.mainWindow.gridLayoutPatternViewer.removeWidget(self.toolbar)
+        self.toolbar.close()
+
+        try:
+            self.figure = p.patternPlot()
+            self.canvas = FigureCanvas(self.figure)
+            self.toolbar = NavigationToolbar(self.canvas, self.view)
+            self.mainWindow.gridLayoutPatternViewer.addWidget(self.toolbar)
+            self.mainWindow.gridLayoutPatternViewer.addWidget(self.canvas)
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Pattern Viewer Fail", str(e), QtWidgets.QMessageBox.Ok)
+            pass
+
+    def saveParameters(self) -> list[str]:
+        commands = []
+        for i in range(Defines.pattern.loops_count):
+            commands.append(f"patnloop {i} {getattr(self.view, f'spinBoxLoop{i}Repetition').text()}")
+            commands.append(f"patloop {i} {getattr(self.view, f'lineEditLoop{i}Start').text()}, "
+                            f"{getattr(self.view, f'lineEditLoop{i}Stop').text()}")
+
+            commands.append(f"patwait {i} {getattr(self.view, f'lineEditLoop{i}Wait').text()}")
+            commands.append(f"patwaittime {i} {getattr(self.view, f'spinBoxLoop{i}WaitTime').text()}")
+        commands.append(f"patlimits {self.view.lineEditStartAddress.text()}, {self.view.lineEditStopAddress.text()}")
+        # commands.append(f"patfname {self.view.lineEditPatternFile.text()}")
+        return commands

pyctbgui/pyctbgui/services/Plot.py

@@ -0,0 +1,519 @@
+import logging
+from functools import partial
+import random
+from pathlib import Path
+
+import numpy as np
+from PyQt5 import QtWidgets, QtGui, uic
+
+import pyqtgraph as pg
+from pyctbgui.utils import recordOrApplyPedestal
+from pyqtgraph import PlotWidget
+
+from pyctbgui.utils.defines import Defines
+
+
+class PlotTab(QtWidgets.QWidget):
+
+    def __init__(self, parent):
+        super().__init__(parent)
+        self.frame_min: float = 0.0
+        self.frame_max: float = 0.0
+        uic.loadUi(Path(__file__).parent.parent / 'ui' / "plot.ui", parent)
+        self.view = parent
+        self.mainWindow = None
+        self.det = None
+        self.signalsTab = None
+        self.transceiverTab = None
+        self.acquisitionTab = None
+        self.adcTab = None
+        self.cmin: float = 0.0
+        self.cmax: float = 0.0
+        self.colorRangeMode: Defines.colorRange = Defines.colorRange.all
+        self.ignoreHistogramSignal: bool = False
+        self.imagePlots: list[PlotWidget] = []
+        # list of callback functions to notify tabs when we should hide their legend
+        # follows the observer design pattern
+        self.hideLegendObservers = []
+        self.pedestalRecord: bool = False
+        self.pedestalApply: bool = True
+        self.__acqFrames = None
+        self.logger = logging.getLogger('PlotTab')
+
+    def setup_ui(self):
+        self.signalsTab = self.mainWindow.signalsTab
+        self.transceiverTab = self.mainWindow.transceiverTab
+        self.acquisitionTab = self.mainWindow.acquisitionTab
+        self.adcTab = self.mainWindow.adcTab
+        self.initializeColorMaps()
+
+        self.imagePlots = (
+            self.mainWindow.plotAnalogImage,
+            self.mainWindow.plotDigitalImage,
+            self.mainWindow.plotTransceiverImage,
+        )
+
+    def connect_ui(self):
+        self.view.radioButtonNoPlot.clicked.connect(self.plotOptions)
+        self.view.radioButtonWaveform.clicked.connect(self.plotOptions)
+        self.view.radioButtonDistribution.clicked.connect(self.plotOptions)
+        self.view.radioButtonImage.clicked.connect(self.plotOptions)
+        self.view.comboBoxPlot.currentIndexChanged.connect(self.setPixelMap)
+        self.view.comboBoxColorMap.currentIndexChanged.connect(self.setColorMap)
+        self.view.comboBoxZMQHWM.currentIndexChanged.connect(self.setZMQHWM)
+        self.view.spinBoxSerialOffset.editingFinished.connect(self.setSerialOffset)
+        self.view.spinBoxNCount.editingFinished.connect(self.setNCounter)
+        self.view.spinBoxDynamicRange.editingFinished.connect(self.setDynamicRange)
+        self.view.spinBoxImageX.editingFinished.connect(self.setImageX)
+        self.view.spinBoxImageY.editingFinished.connect(self.setImageY)
+
+        self.view.radioButtonPedestalRecord.toggled.connect(self.togglePedestalRecord)
+        self.view.radioButtonPedestalApply.toggled.connect(self.togglePedestalApply)
+        self.view.pushButtonPedestalReset.clicked.connect(self.resetPedestal)
+        self.view.pushButtonSavePedestal.clicked.connect(self.savePedestal)
+        self.view.pushButtonLoadPedestal.clicked.connect(self.loadPedestal)
+
+        self.view.checkBoxRaw.stateChanged.connect(self.setRawData)
+        self.view.spinBoxRawMin.editingFinished.connect(self.setRawData)
+        self.view.spinBoxRawMax.editingFinished.connect(self.setRawData)
+        self.view.checkBoxPedestal.stateChanged.connect(self.setPedestalSubtract)
+        self.view.spinBoxPedestalMin.editingFinished.connect(self.setPedestalSubtract)
+        self.view.spinBoxPedestalMax.editingFinished.connect(self.setPedestalSubtract)
+        self.view.spinBoxFit.editingFinished.connect(self.setFitADC)
+        self.view.spinBoxPlot.editingFinished.connect(self.setPlotBit)
+        self.view.pushButtonReferesh.clicked.connect(self.acquisitionTab.refresh)
+        # color range widgets
+        self.view.cminSpinBox.editingFinished.connect(self.setCmin)
+        self.view.cmaxSpinBox.editingFinished.connect(self.setCmax)
+        self.view.radioButtonAutomatic.clicked.connect(partial(self.setColorRangeMode, Defines.colorRange.all))
+        self.view.radioButtonFixed.clicked.connect(partial(self.setColorRangeMode, Defines.colorRange.fixed))
+        self.view.radioButtonCenter.clicked.connect(partial(self.setColorRangeMode, Defines.colorRange.center))
+
+        for plot in self.imagePlots:
+            plot.scene.sigMouseMoved.connect(partial(self.showPlotValues, plot))
+            plot.getHistogramWidget().item.sigLevelChangeFinished.connect(partial(self.handleHistogramChange, plot))
+
+        self.view.checkBoxShowLegend.stateChanged.connect(self.toggleLegend)
+
+    def refresh(self):
+        self.getZMQHWM()
+
+    def initializeColorMaps(self):
+        self.view.comboBoxColorMap.addItems(Defines.Color_map)
+        self.view.comboBoxColorMap.setCurrentIndex(Defines.Color_map.index(Defines.Default_Color_Map))
+        self.setColorMap()
+
+    def savePedestal(self):
+        """
+        slot function to save pedestal values
+        """
+        response = QtWidgets.QFileDialog.getSaveFileName(self.view, "Save Pedestal", str(self.det.fpath))
+        recordOrApplyPedestal.savePedestal(Path(response[0]))
+        self.logger.info(f'saved Pedestal in {response[0]}')
+
+    def loadPedestal(self):
+        """
+        slot function to load pedestal values
+        """
+        response = QtWidgets.QFileDialog.getOpenFileName(self.view, "Load Pedestal", str(self.det.fpath))
+        if response[0] == '':
+            return
+        recordOrApplyPedestal.reset(self)
+        try:
+            recordOrApplyPedestal.loadPedestal(Path(response[0]))
+        except (IsADirectoryError, ValueError, EOFError):
+            QtWidgets.QMessageBox.warning(
+                self.view,
+                "Loading Pedestal Failed",
+                "Loading Pedestal failed make sure the file is in the valid .npy format",
+                QtWidgets.QMessageBox.Ok,
+            )
+            self.logger.exception("Exception when loading pedestal")
+        else:
+            self.logger.info(f'loaded Pedestal from {response[0]}')
+            self.updateLabelPedestalFrames(True)
+
+    def togglePedestalRecord(self):
+        """
+        slot function for pedestal record radio button
+        toggle pedestal record variable and disables the frames spinboxes in acquisition tab or plot tab depenging on
+        the mode
+        """
+        self.pedestalRecord = not self.pedestalRecord
+
+    def togglePedestalApply(self):
+        """
+        slot function for pedestal apply radio button
+        """
+        self.pedestalApply = not self.pedestalApply
+
+    def resetPedestal(self):
+        """
+        slot function for resetting the pedestal
+        """
+        recordOrApplyPedestal.reset(self)
+
+    def updateLabelPedestalFrames(self, loadedPedestal=False):
+        """
+        updates labelPedestalFrames to the length of savedFrames
+        """
+        if loadedPedestal:
+            self.view.labelPedestalFrames.setText('using loaded pedestal file')
+        else:
+            self.view.labelPedestalFrames.setText(f'recorded frames: {recordOrApplyPedestal.getFramesCount()}')
+
+    def subscribeToggleLegend(self, fn_cbk):
+        """
+        subscribe to the event of toggling the hide legend checkbox by subscribing
+        with a callback function
+        """
+        self.hideLegendObservers.append(fn_cbk)
+
+    def toggleLegend(self):
+        """
+        notify subscribers for the showLegend checkbox event by executing their callbacks
+        """
+        self.mainWindow.showLegend = not self.mainWindow.showLegend
+        for notify_function in self.hideLegendObservers:
+            notify_function()
+
+    def setCmin(self, value=None):
+        """
+        slot for setting cmin from cminSpinBox
+        also used as a normal function
+        """
+        if value is None:
+            self.cmin = self.view.cminSpinBox.value()
+        else:
+            self.cmin = value
+        self.updateColorRangeUI()
+
+    def setCmax(self, value=None):
+        """
+        slot for setting cmax from cmaxSpinBox
+        also used as a normal function
+        """
+        if value is None:
+            self.cmax = self.view.cmaxSpinBox.value()
+        else:
+            self.cmax = value
+        self.updateColorRangeUI()
+
+    def setColorRangeMode(self, mode):
+        """
+        slot for setting the color range mode (all,fixed,3-97%)
+        """
+        self.colorRangeMode = mode
+
+        # disable or enable cmin/cmax spinboxes
+        enableSpinBoxes = mode == Defines.colorRange.fixed
+        self.view.cminSpinBox.setEnabled(enableSpinBoxes)
+        self.view.cmaxSpinBox.setEnabled(enableSpinBoxes)
+        self.updateColorRange()
+        self.updateColorRangeUI()
+
+    def handleHistogramChange(self, plot):
+        """
+        slot called after changing the color bar
+        This is called even when pyqtgraph sets the image without any user intervention
+        the class attribute ignore_histogram_signal is set to False before setting the image
+        so that we can distinguish between the signal originates from pyqt or from the user
+        """
+        if not self.ignoreHistogramSignal:
+            self.cmin, self.cmax = plot.getHistogramWidget().item.getLevels()
+            self.setCmin(self.cmin)
+            self.setCmax(self.cmax)
+
+        self.ignoreHistogramSignal = False
+        # self.setColorRangeMode(Defines.colorRange.fixed)
+
+    def setFrameLimits(self, frame):
+        """
+        function called from AcquisitionTab::read_zmq to get the maximum and minimum
+        values of the decoded frame and save them in frame_min/frame_max
+        """
+        self.frame_min = np.min(frame)
+        self.frame_max = np.max(frame)
+        self.updateColorRange()
+
+    def updateColorRange(self):
+        """
+        for mode:
+        - all:   sets cmin and cmax to the maximums/minimum values of the frame
+        - 3-97%: limits cmax and cmin so that we ignore 3% from each end of the whole range
+        - fixed: this function does not change cmin and cmax
+        """
+
+        if self.colorRangeMode == Defines.colorRange.all:
+            self.cmin = self.frame_min
+            self.cmax = self.frame_max
+        elif self.colorRangeMode == Defines.colorRange.center:
+            self.cmin = self.frame_min + 0.03 * (self.frame_max - self.frame_min)
+            self.cmax = self.frame_max - 0.03 * (self.frame_max - self.frame_min)
+
+        self.updateColorRangeUI()
+
+    def updateColorRangeUI(self):
+        """
+        updates UI views should be called after every change to cmin or cmax
+        """
+        for plot in self.imagePlots:
+            plot.getHistogramWidget().item.setLevels(min=self.cmin, max=self.cmax)
+        self.view.cminSpinBox.setValue(self.cmin)
+        self.view.cmaxSpinBox.setValue(self.cmax)
+
+    def setColorMap(self):
+        cm = pg.colormap.getFromMatplotlib(self.view.comboBoxColorMap.currentText())
+        # print(f'color map:{self.comboBoxColorMap.currentText()}')
+        self.mainWindow.plotAnalogImage.setColorMap(cm)
+        self.mainWindow.plotDigitalImage.setColorMap(cm)
+        self.mainWindow.plotTransceiverImage.setColorMap(cm)
+
+    def getZMQHWM(self):
+
+        self.view.comboBoxZMQHWM.currentIndexChanged.disconnect()
+
+        rx_zmq_hwm = self.det.getRxZmqHwm()[0]
+        # ensure same value in client zmq
+        self.det.setClientZmqHwm(rx_zmq_hwm)
+
+        # high readout, low HWM
+        if -1 < rx_zmq_hwm < 25:
+            self.view.comboBoxZMQHWM.setCurrentIndex(1)
+        # low readout, high HWM
+        else:
+            self.view.comboBoxZMQHWM.setCurrentIndex(0)
+        self.view.comboBoxZMQHWM.currentIndexChanged.connect(self.setZMQHWM)
+
+    def setZMQHWM(self):
+        val = self.view.comboBoxZMQHWM.currentIndex()
+        # low readout, high HWM
+        if val == 0:
+            self.det.setRxZmqHwm(Defines.Zmq_hwm_low_speed)
+            self.det.setClientZmqHwm(Defines.Zmq_hwm_low_speed)
+        # high readout, low HWM
+        else:
+            self.det.setRxZmqHwm(Defines.Zmq_hwm_high_speed)
+            self.det.setClientZmqHwm(Defines.Zmq_hwm_high_speed)
+
+        self.getZMQHWM()
+
+    def addSelectedAnalogPlots(self, i):
+        enable = getattr(self.adcTab.view, f"checkBoxADC{i}Plot").isChecked()
+        if enable:
+            self.mainWindow.analogPlots[i].show()
+        if not enable:
+            self.mainWindow.analogPlots[i].hide()
+
+    def addAllSelectedAnalogPlots(self):
+        for i in range(Defines.adc.count):
+            self.addSelectedAnalogPlots(i)
+
+    def removeAllAnalogPlots(self):
+        for i in range(Defines.adc.count):
+            self.mainWindow.analogPlots[i].hide()
+
+        cm = pg.colormap.get('CET-L9')  # prepare a linear color map
+        self.mainWindow.plotDigitalImage.setColorMap(cm)
+
+    def addSelectedDigitalPlots(self, i):
+        enable = getattr(self.signalsTab.view, f"checkBoxBIT{i}Plot").isChecked()
+        if enable:
+            self.mainWindow.digitalPlots[i].show()
+        if not enable:
+            self.mainWindow.digitalPlots[i].hide()
+
+    def addAllSelectedDigitalPlots(self):
+        for i in range(Defines.signals.count):
+            self.addSelectedDigitalPlots(i)
+
+    def removeAllDigitalPlots(self):
+        for i in range(Defines.signals.count):
+            self.mainWindow.digitalPlots[i].hide()
+
+    def addSelectedTransceiverPlots(self, i):
+        enable = getattr(self.transceiverTab.view, f"checkBoxTransceiver{i}Plot").isChecked()
+        if enable:
+            self.mainWindow.transceiverPlots[i].show()
+        if not enable:
+            self.mainWindow.transceiverPlots[i].hide()
+
+    def addAllSelectedTransceiverPlots(self):
+        for i in range(Defines.transceiver.count):
+            self.addSelectedTransceiverPlots(i)
+
+    def removeAllTransceiverPlots(self):
+        for i in range(Defines.transceiver.count):
+            self.mainWindow.transceiverPlots[i].hide()
+
+    def showPlot(self):
+        self.mainWindow.plotAnalogWaveform.hide()
+        self.mainWindow.plotDigitalWaveform.hide()
+        self.mainWindow.plotTransceiverWaveform.hide()
+        self.mainWindow.plotAnalogImage.hide()
+        self.mainWindow.plotDigitalImage.hide()
+        self.mainWindow.plotTransceiverImage.hide()
+        self.view.labelDigitalWaveformOption.setDisabled(True)
+        self.view.radioButtonOverlay.setDisabled(True)
+        self.view.radioButtonStripe.setDisabled(True)
+
+        if self.mainWindow.romode.value in [0, 2]:
+            if self.view.radioButtonWaveform.isChecked():
+                self.mainWindow.plotAnalogWaveform.show()
+            elif self.view.radioButtonImage.isChecked():
+                self.mainWindow.plotAnalogImage.show()
+        if self.mainWindow.romode.value in [1, 2, 4]:
+            if self.view.radioButtonWaveform.isChecked():
+                self.mainWindow.plotDigitalWaveform.show()
+            elif self.view.radioButtonImage.isChecked():
+                self.mainWindow.plotDigitalImage.show()
+            self.view.labelDigitalWaveformOption.setEnabled(True)
+            self.view.radioButtonOverlay.setEnabled(True)
+            self.view.radioButtonStripe.setEnabled(True)
+
+        if self.mainWindow.romode.value in [3, 4]:
+            if self.view.radioButtonWaveform.isChecked():
+                self.mainWindow.plotTransceiverWaveform.show()
+            elif self.view.radioButtonImage.isChecked():
+                self.mainWindow.plotTransceiverImage.show()
+
+    def plotOptions(self):
+
+        self.mainWindow.framePatternViewer.hide()
+        self.showPlot()
+
+        # disable plotting
+        self.mainWindow.read_timer.stop()
+
+        if self.view.radioButtonWaveform.isChecked():
+            self.mainWindow.plotAnalogWaveform.setLabel(
+                'left', "<span style=\"color:black;font-size:14px\">Output [ADC]</span>")
+            self.mainWindow.plotAnalogWaveform.setLabel(
+                'bottom', "<span style=\"color:black;font-size:14px\">Analog Sample [#]</span>")
+            self.mainWindow.plotDigitalWaveform.setLabel(
+                'left', "<span style=\"color:black;font-size:14px\">Digital Bit</span>")
+            self.mainWindow.plotDigitalWaveform.setLabel(
+                'bottom', "<span style=\"color:black;font-size:14px\">Digital Sample [#]</span>")
+            self.mainWindow.plotTransceiverWaveform.setLabel(
+                'left', "<span style=\"color:black;font-size:14px\">Transceiver Bit</span>")
+            self.mainWindow.plotTransceiverWaveform.setLabel(
+                'bottom', "<span style=\"color:black;font-size:14px\">Transceiver Sample [#]</span>")
+
+            self.view.stackedWidgetPlotType.setCurrentIndex(0)
+
+        elif self.view.radioButtonImage.isChecked():
+            self.view.stackedWidgetPlotType.setCurrentIndex(2)
+            self.setPixelMap()
+
+        if self.view.radioButtonNoPlot.isChecked():
+            self.view.labelPlotOptions.hide()
+            self.view.stackedWidgetPlotType.hide()
+        # enable plotting
+        else:
+            self.view.labelPlotOptions.show()
+            self.view.stackedWidgetPlotType.show()
+            self.mainWindow.read_timer.start(Defines.Time_Plot_Refresh_ms)
+
+    def setPixelMap(self):
+        if self.view.comboBoxPlot.currentText() == "Matterhorn":
+            self.mainWindow.nTransceiverRows = Defines.Matterhorn.nRows
+            self.mainWindow.nTransceiverCols = Defines.Matterhorn.nCols
+        elif self.view.comboBoxPlot.currentText() == "Moench04":
+            self.mainWindow.nAnalogRows = Defines.Moench04.nRows
+            self.mainWindow.nAnalogCols = Defines.Moench04.nCols
+
+    def showPatternViewer(self, enable):
+        if enable:
+            self.mainWindow.framePatternViewer.show()
+            self.mainWindow.framePlot.hide()
+        elif self.mainWindow.framePatternViewer.isVisible():
+            self.mainWindow.framePatternViewer.hide()
+            self.mainWindow.framePlot.show()
+            self.showPlot()
+
+    def setSerialOffset(self):
+        print("plot options - Not implemented yet")
+        # TODO:
+
+    def setNCounter(self):
+        print("plot options - Not implemented yet")
+        # TODO:
+
+    def setDynamicRange(self):
+        print("plot options - Not implemented yet")
+        # TODO:
+
+    def setImageX(self):
+        print("plot options - Not implemented yet")
+        # TODO:
+
+    def setImageY(self):
+        print("plot options - Not implemented yet")
+        # TODO:
+
+    def setRawData(self):
+        print("plot options - Not implemented yet")
+        # TODO: raw data, min, max
+
+    def setPedestalSubtract(self):
+        print("plot options - Not implemented yet")
+        # TODO: pedestal, min, max
+
+    def setFitADC(self):
+        print("plot options - Not implemented yet")
+        # TODO:
+
+    def setPlotBit(self):
+        print("plot options - Not implemented yet")
+        # TODO:
+
+    def getRandomColor(self):
+        '''
+        Returns a random color range (except white) in format string eg. "#aabbcc"
+        '''
+        randomColor = random.randrange(0, 0xffffaa, 0xaa)
+        return "#{:06x}".format(randomColor)
+
+    def getActiveColor(self, button):
+        return button.palette().color(QtGui.QPalette.Window)
+
+    def setActiveColor(self, button, str_color):
+        button.setStyleSheet(":enabled {background-color: %s" % str_color + "} :disabled {background-color: grey}")
+
+    def showPalette(self, button):
+        color = QtWidgets.QColorDialog.getColor()
+        if color.isValid():
+            self.setActiveColor(button, color.name())
+            # get the RGB Values
+            # print(color.getRgb())
+
+    def showPlotValues(self, sender, pos):
+        x = sender.getImageItem().mapFromScene(pos).x()
+        y = sender.getImageItem().mapFromScene(pos).y()
+        val = 0
+        nMaxY = self.mainWindow.nAnalogRows
+        nMaxX = self.mainWindow.nAnalogCols
+        frame = self.mainWindow.analog_frame
+        if sender == self.mainWindow.plotDigitalImage:
+            nMaxY = self.mainWindow.nDigitalRows
+            nMaxX = self.mainWindow.nDigitalCols
+            frame = self.mainWindow.digital_frame
+        elif sender == self.mainWindow.plotTransceiverImage:
+            nMaxY = self.mainWindow.nTransceiverRows
+            nMaxX = self.mainWindow.nTransceiverCols
+            frame = self.mainWindow.transceiver_frame
+        if 0 <= x < nMaxX and 0 <= y < nMaxY and not np.array_equal(frame, []):
+            val = frame[int(x), int(y)]
+            message = f'[{x:.2f}, {y:.2f}] = {val:.2f}'
+            sender.setToolTip(message)
+            # print(message)
+        else:
+            sender.setToolTip('')
+
+    def saveParameters(self):
+        commands = []
+        if self.view.comboBoxZMQHWM.currentIndex() == 0:
+            commands.append(f"zmqhwm {Defines.Zmq_hwm_low_speed}")
+        else:
+            commands.append(f"zmqhwm {Defines.Zmq_hwm_high_speed}")
+        return commands

pyctbgui/pyctbgui/services/PowerSupplies.py

@@ -0,0 +1,135 @@
+from functools import partial
+from pathlib import Path
+
+from PyQt5 import QtWidgets, uic
+from pyctbgui.utils.defines import Defines
+
+from slsdet import dacIndex, detectorType
+
+
+class PowerSuppliesTab(QtWidgets.QWidget):
+
+    def __init__(self, parent):
+        super().__init__(parent)
+        uic.loadUi(Path(__file__).parent.parent / 'ui' / "powerSupplies.ui", parent)
+        self.view = parent
+
+    def refresh(self):
+        self.updateVoltageNames()
+        for i in Defines.powerSupplies:
+            self.getVoltage(i)
+            if self.det.type == detectorType.CHIPTESTBOARD:
+                self.getCurrent(i)
+
+    def connect_ui(self):
+        for i in Defines.powerSupplies:
+            spinBox = getattr(self.view, f"spinBoxV{i}")
+            checkBox = getattr(self.view, f"checkBoxV{i}")
+            spinBox.editingFinished.connect(partial(self.setVoltage, i))
+            checkBox.stateChanged.connect(partial(self.setVoltage, i))
+        self.view.pushButtonPowerOff.clicked.connect(self.powerOff)
+
+    def setup_ui(self):
+        for i in Defines.powerSupplies:
+            dac = getattr(dacIndex, f"V_POWER_{i}")
+            spinBox = getattr(self.view, f"spinBoxV{i}")
+            checkBox = getattr(self.view, f"checkBoxV{i}")
+            retval = self.det.getPower(dac)[0]
+            spinBox.setValue(retval)
+            if retval == 0:
+                checkBox.setChecked(False)
+                spinBox.setDisabled(True)
+            if self.det.type == detectorType.XILINX_CHIPTESTBOARD:
+                label = getattr(self.view, f"labelI{i}")
+                label.setDisabled(True)
+        if self.det.type == detectorType.XILINX_CHIPTESTBOARD:
+            self.view.spinBoxVChip.setDisabled(True)
+
+
+    def updateVoltageNames(self):
+        retval = self.det.getPowerNames()
+        getattr(self.view, "checkBoxVA").setText(retval[0])
+        getattr(self.view, "checkBoxVB").setText(retval[1])
+        getattr(self.view, "checkBoxVC").setText(retval[2])
+        getattr(self.view, "checkBoxVD").setText(retval[3])
+        getattr(self.view, "checkBoxVIO").setText(retval[4])
+
+    def getVoltage(self, i):
+        spinBox = getattr(self.view, f"spinBoxV{i}")
+        checkBox = getattr(self.view, f"checkBoxV{i}")
+        voltageIndex = getattr(dacIndex, f"V_POWER_{i}")
+        label = getattr(self.view, f"labelV{i}")
+
+        spinBox.editingFinished.disconnect()
+        checkBox.stateChanged.disconnect()
+
+        if self.det.type == detectorType.XILINX_CHIPTESTBOARD:
+            retval = self.det.getPower(voltageIndex)[0]
+        else:
+            retval = self.det.getMeasuredPower(voltageIndex)[0]
+        # spinBox.setValue(retval)
+        if retval > 1:
+            checkBox.setChecked(True)
+        if checkBox.isChecked():
+            spinBox.setEnabled(True)
+        else:
+            spinBox.setDisabled(True)
+        label.setText(f'{str(retval)} mV')
+
+        spinBox.editingFinished.connect(partial(self.setVoltage, i))
+        checkBox.stateChanged.connect(partial(self.setVoltage, i))
+        
+        if self.det.type == detectorType.CHIPTESTBOARD:
+            self.getVChip()
+
+        # TODO: handle multiple events when pressing enter (twice)
+
+    def setVoltage(self, i):
+        checkBox = getattr(self.view, f"checkBoxV{i}")
+        spinBox = getattr(self.view, f"spinBoxV{i}")
+        voltageIndex = getattr(dacIndex, f"V_POWER_{i}")
+        spinBox.editingFinished.disconnect()
+
+        value = 0
+        if checkBox.isChecked():
+            value = spinBox.value()
+        try:
+            self.det.setPower(voltageIndex, value)
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Voltage Fail", str(e), QtWidgets.QMessageBox.Ok)
+            pass
+
+        # TODO: (properly) disconnecting and connecting to handle multiple events (out of focus and pressing enter).
+        spinBox.editingFinished.connect(partial(self.setVoltage, i))
+        self.getVoltage(i)
+        if self.det.type == detectorType.CHIPTESTBOARD:
+            self.getCurrent(i)
+
+    def getCurrent(self, i):
+        label = getattr(self.view, f"labelI{i}")
+        currentIndex = getattr(dacIndex, f"I_POWER_{i}")
+        retval = self.det.getMeasuredCurrent(currentIndex)[0]
+        label.setText(f'{str(retval)} mA')
+
+    def getVChip(self):
+        self.view.spinBoxVChip.setValue(self.det.getPower(dacIndex.V_POWER_CHIP)[0])
+
+    def powerOff(self):
+        for i in Defines.powerSupplies:
+            # set all voltages to 0
+            checkBox = getattr(self.view, f"checkBoxV{i}")
+            checkBox.stateChanged.disconnect()
+            checkBox.setChecked(False)
+            checkBox.stateChanged.connect(partial(self.setVoltage, i))
+            self.setVoltage(i)
+
+    def saveParameters(self) -> list:
+        commands = []
+        for i in Defines.powerSupplies:
+            enabled = getattr(self.view, f"checkBoxV{i}").isChecked()
+            if enabled:
+                value = getattr(self.view, f"spinBoxV{i}").value()
+                commands.append(f"v_{i.lower()} {value}")
+            else:
+                commands.append(f"v_{i.lower()} 0")
+        return commands

pyctbgui/pyctbgui/services/Signals.py

@@ -0,0 +1,373 @@
+from functools import partial
+from pathlib import Path
+
+import numpy as np
+from PyQt5 import QtWidgets, uic
+import pyqtgraph as pg
+from pyqtgraph import LegendItem
+
+from pyctbgui.utils.bit_utils import bit_is_set, manipulate_bit
+from pyctbgui.utils.defines import Defines
+from pyctbgui.utils.recordOrApplyPedestal import recordOrApplyPedestal
+
+
+class SignalsTab(QtWidgets.QWidget):
+
+    def __init__(self, parent):
+        super().__init__(parent)
+        uic.loadUi(Path(__file__).parent.parent / 'ui' / "signals.ui", parent)
+        self.view = parent
+        self.mainWindow = None
+        self.det = None
+        self.plotTab = None
+        self.legend: LegendItem | None = None
+        self.rx_dbitoffset = None
+        self.rx_dbitlist = None
+
+    def refresh(self):
+        self.updateSignalNames()
+        self.updateDigitalBitEnable()
+        self.updateIOOut()
+        self.getDBitOffset()
+
+    def connect_ui(self):
+        for i in range(Defines.signals.count):
+            getattr(self.view, f"checkBoxBIT{i}DB").stateChanged.connect(partial(self.setDigitalBitEnable, i))
+            getattr(self.view, f"checkBoxBIT{i}Out").stateChanged.connect(partial(self.setIOOut, i))
+            getattr(self.view, f"checkBoxBIT{i}Plot").stateChanged.connect(partial(self.setEnableBitPlot, i))
+            getattr(self.view, f"pushButtonBIT{i}").clicked.connect(partial(self.selectBitColor, i))
+        self.view.checkBoxBIT0_31DB.stateChanged.connect(
+            partial(self.setDigitalBitEnableRange, 0, Defines.signals.half))
+        self.view.checkBoxBIT32_63DB.stateChanged.connect(
+            partial(self.setDigitalBitEnableRange, Defines.signals.half, Defines.signals.count))
+        self.view.checkBoxBIT0_31Plot.stateChanged.connect(partial(self.setEnableBitPlotRange, 0,
+                                                                   Defines.signals.half))
+        self.view.checkBoxBIT32_63Plot.stateChanged.connect(
+            partial(self.setEnableBitPlotRange, Defines.signals.half, Defines.signals.count))
+        self.view.checkBoxBIT0_31Out.stateChanged.connect(partial(self.setIOOutRange, 0, Defines.signals.half))
+        self.view.checkBoxBIT32_63Out.stateChanged.connect(
+            partial(self.setIOOutRange, Defines.signals.half, Defines.signals.count))
+        self.view.lineEditPatIOCtrl.editingFinished.connect(self.setIOOutReg)
+        self.view.spinBoxDBitOffset.editingFinished.connect(self.setDbitOffset)
+
+    def setup_ui(self):
+        self.plotTab = self.mainWindow.plotTab
+
+        for i in range(Defines.signals.count):
+            self.setDBitButtonColor(i, self.plotTab.getRandomColor())
+
+        self.initializeAllDigitalPlots()
+
+        self.legend = self.mainWindow.plotDigitalWaveform.getPlotItem().legend
+        self.legend.clear()
+        # subscribe to toggle legend
+        self.plotTab.subscribeToggleLegend(self.updateLegend)
+
+    def getEnabledPlots(self):
+        """
+        return plots that are shown (checkBoxTransceiver{i}Plot is checked)
+        """
+        enabledPlots = []
+        self.legend.clear()
+        for i in range(Defines.signals.count):
+            if getattr(self.view, f'checkBoxBIT{i}Plot').isChecked():
+                plotName = getattr(self.view, f"labelBIT{i}").text()
+                enabledPlots.append((self.mainWindow.digitalPlots[i], plotName))
+        return enabledPlots
+
+    def updateLegend(self):
+        """
+        update the legend for the signals waveform plot
+        should be called after checking or unchecking plot checkbox
+        """
+        if not self.mainWindow.showLegend:
+            self.legend.clear()
+        else:
+            for plot, name in self.getEnabledPlots():
+                self.legend.addItem(plot, name)
+
+    @recordOrApplyPedestal
+    def _processWaveformData(self, data, aSamples, dSamples, rx_dbitlist, isPlottedArray, rx_dbitoffset, romode,
+                             nADCEnabled):
+        """
+        transform raw waveform data into a processed numpy array
+        @param data:  raw waveform data
+        """
+        dbitoffset = rx_dbitoffset
+        if romode == 2:
+            dbitoffset += nADCEnabled * 2 * aSamples
+        digital_array = np.array(np.frombuffer(data, offset=dbitoffset, dtype=np.uint8))
+        nbitsPerDBit = dSamples
+        if nbitsPerDBit % 8 != 0:
+            nbitsPerDBit += (8 - (dSamples % 8))
+        offset = 0
+        arr = []
+        for i in rx_dbitlist:
+            # where numbits * numsamples is not a multiple of 8
+            if offset % 8 != 0:
+                offset += (8 - (offset % 8))
+            if not isPlottedArray[i]:
+                offset += nbitsPerDBit
+                return None
+            waveform = np.zeros(dSamples)
+            for iSample in range(dSamples):
+                # all samples for digital bit together from slsReceiver
+                index = int(offset / 8)
+                iBit = offset % 8
+                bit = (digital_array[index] >> iBit) & 1
+                waveform[iSample] = bit
+                offset += 1
+            arr.append(waveform)
+
+        return np.array(arr)
+
+    def processWaveformData(self, data, aSamples, dSamples):
+        """
+        view function
+        plots processed waveform data
+        data: raw waveform data
+        dsamples: digital samples
+        asamples: analog samples
+        """
+        waveforms = {}
+        isPlottedArray = {i: getattr(self.view, f"checkBoxBIT{i}Plot").isChecked() for i in self.rx_dbitlist}
+
+        digital_array = self._processWaveformData(data, aSamples, dSamples, self.rx_dbitlist, isPlottedArray,
+                                                  self.rx_dbitoffset, self.mainWindow.romode.value,
+                                                  self.mainWindow.nADCEnabled)
+
+        irow = 0
+        for idx, i in enumerate(self.rx_dbitlist):
+            # bits enabled but not plotting
+            waveform = digital_array[idx]
+            if waveform is None:
+                continue
+            self.mainWindow.digitalPlots[i].setData(waveform)
+            plotName = getattr(self.view, f"labelBIT{i}").text()
+            waveforms[plotName] = waveform
+            # TODO: left axis does not show 0 to 1, but keeps increasing
+            if self.plotTab.view.radioButtonStripe.isChecked():
+                self.mainWindow.digitalPlots[i].setY(irow * 2)
+                irow += 1
+            else:
+                self.mainWindow.digitalPlots[i].setY(0)
+        return waveforms
+
+    def initializeAllDigitalPlots(self):
+        self.mainWindow.plotDigitalWaveform = pg.plot()
+        self.mainWindow.plotDigitalWaveform.addLegend(colCount=Defines.colCount)
+        self.mainWindow.verticalLayoutPlot.addWidget(self.mainWindow.plotDigitalWaveform, 3)
+        self.mainWindow.digitalPlots = {}
+        waveform = np.zeros(1000)
+        for i in range(Defines.signals.count):
+            pen = pg.mkPen(color=self.getDBitButtonColor(i), width=1)
+            legendName = getattr(self.view, f"labelBIT{i}").text()
+            self.mainWindow.digitalPlots[i] = self.mainWindow.plotDigitalWaveform.plot(waveform,
+                                                                                       pen=pen,
+                                                                                       name=legendName,
+                                                                                       stepMode="left")
+            self.mainWindow.digitalPlots[i].hide()
+
+        self.mainWindow.plotDigitalImage = pg.ImageView()
+        self.mainWindow.nDigitalRows = 0
+        self.mainWindow.nDigitalCols = 0
+        self.mainWindow.digital_frame = np.zeros((self.mainWindow.nDigitalRows, self.mainWindow.nDigitalCols))
+        self.mainWindow.plotDigitalImage.setImage(self.mainWindow.digital_frame)
+        self.mainWindow.verticalLayoutPlot.addWidget(self.mainWindow.plotDigitalImage, 4)
+
+    def updateSignalNames(self):
+        for i, name in enumerate(self.det.getSignalNames()):
+            getattr(self.view, f"labelBIT{i}").setText(name)
+
+    def getDigitalBitEnable(self, i, dbitList):
+        checkBox = getattr(self.view, f"checkBoxBIT{i}DB")
+        checkBox.stateChanged.disconnect()
+        checkBox.setChecked(i in list(dbitList))
+        checkBox.stateChanged.connect(partial(self.setDigitalBitEnable, i))
+
+    def updateDigitalBitEnable(self):
+        retval = self.det.rx_dbitlist
+        self.rx_dbitlist = list(retval)
+        self.mainWindow.nDBitEnabled = len(list(retval))
+        for i in range(Defines.signals.count):
+            self.getDigitalBitEnable(i, retval)
+            self.getEnableBitPlot(i)
+            self.getEnableBitColor(i)
+            self.plotTab.addSelectedDigitalPlots(i)
+        self.getDigitalBitEnableRange(retval)
+        self.getEnableBitPlotRange()
+
+    def setDigitalBitEnable(self, i):
+        bitList = self.det.rx_dbitlist
+        checkBox = getattr(self.view, f"checkBoxBIT{i}DB")
+        if checkBox.isChecked():
+            bitList.append(i)
+        else:
+            bitList.remove(i)
+        self.det.rx_dbitlist = bitList
+
+        self.updateDigitalBitEnable()
+
+    def getDigitalBitEnableRange(self, dbitList):
+        self.view.checkBoxBIT0_31DB.stateChanged.disconnect()
+        self.view.checkBoxBIT32_63DB.stateChanged.disconnect()
+        self.view.checkBoxBIT0_31DB.setChecked(all(x in list(dbitList) for x in range(Defines.signals.half)))
+        self.view.checkBoxBIT32_63DB.setChecked(
+            all(x in list(dbitList) for x in range(Defines.signals.half, Defines.signals.count)))
+        self.view.checkBoxBIT0_31DB.stateChanged.connect(
+            partial(self.setDigitalBitEnableRange, 0, Defines.signals.half))
+        self.view.checkBoxBIT32_63DB.stateChanged.connect(
+            partial(self.setDigitalBitEnableRange, Defines.signals.half, Defines.signals.count))
+
+    def setDigitalBitEnableRange(self, start_nr, end_nr):
+        bitList = self.det.rx_dbitlist
+        checkBox = getattr(self.view, f"checkBoxBIT{start_nr}_{end_nr - 1}DB")
+        for i in range(start_nr, end_nr):
+            if checkBox.isChecked():
+                if i not in list(bitList):
+                    bitList.append(i)
+            else:
+                if i in list(bitList):
+                    bitList.remove(i)
+        self.det.rx_dbitlist = bitList
+
+        self.updateDigitalBitEnable()
+
+    def getEnableBitPlot(self, i):
+        checkBox = getattr(self.view, f"checkBoxBIT{i}DB")
+        checkBoxPlot = getattr(self.view, f"checkBoxBIT{i}Plot")
+        checkBoxPlot.setEnabled(checkBox.isChecked())
+
+    def setEnableBitPlot(self, i):
+        pushButton = getattr(self.view, f"pushButtonBIT{i}")
+        checkBox = getattr(self.view, f"checkBoxBIT{i}Plot")
+        pushButton.setEnabled(checkBox.isChecked())
+
+        self.getEnableBitPlotRange()
+        self.plotTab.addSelectedDigitalPlots(i)
+        self.updateLegend()
+
+    def getEnableBitPlotRange(self):
+        self.view.checkBoxBIT0_31Plot.stateChanged.disconnect()
+        self.view.checkBoxBIT32_63Plot.stateChanged.disconnect()
+        self.view.checkBoxBIT0_31Plot.setEnabled(
+            all(getattr(self.view, f"checkBoxBIT{i}Plot").isEnabled() for i in range(Defines.signals.half)))
+        self.view.checkBoxBIT32_63Plot.setEnabled(
+            all(
+                getattr(self.view, f"checkBoxBIT{i}Plot").isEnabled()
+                for i in range(Defines.signals.half, Defines.signals.count)))
+        self.view.checkBoxBIT0_31Plot.setChecked(
+            all(getattr(self.view, f"checkBoxBIT{i}Plot").isChecked() for i in range(Defines.signals.half)))
+        self.view.checkBoxBIT32_63Plot.setChecked(
+            all(
+                getattr(self.view, f"checkBoxBIT{i}Plot").isChecked()
+                for i in range(Defines.signals.half, Defines.signals.count)))
+        self.view.checkBoxBIT0_31Plot.stateChanged.connect(partial(self.setEnableBitPlotRange, 0,
+                                                                   Defines.signals.half))
+        self.view.checkBoxBIT32_63Plot.stateChanged.connect(
+            partial(self.setEnableBitPlotRange, Defines.signals.half, Defines.signals.count))
+
+    def setEnableBitPlotRange(self, start_nr, end_nr):
+        checkBox = getattr(self.view, f"checkBoxBIT{start_nr}_{end_nr - 1}Plot")
+        enable = checkBox.isChecked()
+        for i in range(start_nr, end_nr):
+            checkBox = getattr(self.view, f"checkBoxBIT{i}Plot")
+            checkBox.setChecked(enable)
+        self.plotTab.addAllSelectedDigitalPlots()
+
+    def getEnableBitColor(self, i):
+        checkBox = getattr(self.view, f"checkBoxBIT{i}Plot")
+        pushButton = getattr(self.view, f"pushButtonBIT{i}")
+        pushButton.setEnabled(checkBox.isEnabled() and checkBox.isChecked())
+
+    def selectBitColor(self, i):
+        pushButton = getattr(self.view, f"pushButtonBIT{i}")
+        self.plotTab.showPalette(pushButton)
+        pen = pg.mkPen(color=self.getDBitButtonColor(i), width=1)
+        self.mainWindow.digitalPlots[i].setPen(pen)
+
+    def getDBitButtonColor(self, i):
+        pushButton = getattr(self.view, f"pushButtonBIT{i}")
+        return self.plotTab.getActiveColor(pushButton)
+
+    def setDBitButtonColor(self, i, color):
+        pushButton = getattr(self.view, f"pushButtonBIT{i}")
+        return self.plotTab.setActiveColor(pushButton, color)
+
+    def getIOOutReg(self):
+        retval = self.det.patioctrl
+        self.view.lineEditPatIOCtrl.editingFinished.disconnect()
+        self.view.lineEditPatIOCtrl.setText("0x{:016x}".format(retval))
+        self.view.lineEditPatIOCtrl.editingFinished.connect(self.setIOOutReg)
+        return retval
+
+    def setIOOutReg(self):
+        self.view.lineEditPatIOCtrl.editingFinished.disconnect()
+        try:
+            self.det.patioctrl = int(self.view.lineEditPatIOCtrl.text(), 16)
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "IO Out Fail", str(e), QtWidgets.QMessageBox.Ok)
+            pass
+        # TODO: handling double event exceptions
+        self.view.lineEditPatIOCtrl.editingFinished.connect(self.setIOOutReg)
+        self.updateIOOut()
+
+    def updateCheckBoxIOOut(self, i, out):
+        checkBox = getattr(self.view, f"checkBoxBIT{i}Out")
+        checkBox.stateChanged.disconnect()
+        checkBox.setChecked(bit_is_set(out, i))
+        checkBox.stateChanged.connect(partial(self.setIOOut, i))
+
+    def updateIOOut(self):
+        retval = self.getIOOutReg()
+        for i in range(Defines.signals.count):
+            self.updateCheckBoxIOOut(i, retval)
+        self.getIOoutRange(retval)
+
+    def setIOOut(self, i):
+        out = self.det.patioctrl
+        checkBox = getattr(self.view, f"checkBoxBIT{i}Out")
+        mask = manipulate_bit(checkBox.isChecked(), out, i)
+        self.det.patioctrl = mask
+
+        retval = self.getIOOutReg()
+        self.updateCheckBoxIOOut(i, retval)
+        self.getIOoutRange(retval)
+
+    def getIOoutRange(self, out):
+        self.view.checkBoxBIT0_31Out.stateChanged.disconnect()
+        self.view.checkBoxBIT32_63Out.stateChanged.disconnect()
+        self.view.checkBoxBIT0_31Out.setChecked((out & Defines.signals.BIT0_31_MASK) == Defines.signals.BIT0_31_MASK)
+        self.view.checkBoxBIT32_63Out.setChecked((out
+                                                  & Defines.signals.BIT32_63_MASK) == Defines.signals.BIT32_63_MASK)
+        self.view.checkBoxBIT0_31Out.stateChanged.connect(partial(self.setIOOutRange, 0, Defines.signals.half))
+        self.view.checkBoxBIT32_63Out.stateChanged.connect(
+            partial(self.setIOOutRange, Defines.signals.half, Defines.signals.count))
+
+    def setIOOutRange(self, start_nr, end_nr):
+        out = self.det.patioctrl
+        checkBox = getattr(self.view, f"checkBoxBIT{start_nr}_{end_nr - 1}Out")
+        mask = getattr(Defines.signals, f"BIT{start_nr}_{end_nr - 1}_MASK")
+        if checkBox.isChecked():
+            self.det.patioctrl = out | mask
+        else:
+            self.det.patioctrl = out & ~mask
+        self.updateIOOut()
+
+    def getDBitOffset(self):
+        self.view.spinBoxDBitOffset.editingFinished.disconnect()
+        self.rx_dbitoffset = self.det.rx_dbitoffset
+        self.view.spinBoxDBitOffset.setValue(self.rx_dbitoffset)
+        self.view.spinBoxDBitOffset.editingFinished.connect(self.setDbitOffset)
+
+    def setDbitOffset(self):
+        self.det.rx_dbitoffset = self.view.spinBoxDBitOffset.value()
+
+    def saveParameters(self) -> list:
+        commands = []
+        dblist = [str(i) for i in range(Defines.signals.count) if getattr(self.view, f"checkBoxBIT{i}DB").isChecked()]
+        if len(dblist) > 0:
+            commands.append(f"rx_dbitlist {', '.join(dblist)}")
+        commands.append(f"rx_dbitoffset {self.view.spinBoxDBitOffset.value()}")
+        commands.append(f"patioctrl {self.view.lineEditPatIOCtrl.text()}")
+        return commands

pyctbgui/pyctbgui/services/SlowADCs.py

@@ -0,0 +1,47 @@
+from functools import partial
+from pathlib import Path
+
+from PyQt5 import uic, QtWidgets
+
+from pyctbgui.utils.defines import Defines
+from slsdet import dacIndex, detectorType
+
+
+class SlowAdcTab(QtWidgets.QWidget):
+
+    def __init__(self, parent):
+        super().__init__(parent)
+        uic.loadUi(Path(__file__).parent.parent / 'ui' / "slowAdcs.ui", parent)
+        self.view = parent
+        self.mainWindow = None
+        self.det = None
+
+    def setup_ui(self):
+        if self.det.type == detectorType.XILINX_CHIPTESTBOARD:
+            self.view.pushButtonTemp.setDisabled(True)      
+
+    def connect_ui(self):
+        for i in range(Defines.slowAdc.count):
+            getattr(self.view, f"pushButtonSlowAdc{i}").clicked.connect(partial(self.updateSlowAdc, i))
+        self.view.pushButtonTemp.clicked.connect(self.updateTemperature)
+
+    def refresh(self):
+        self.updateSlowAdcNames()
+        for i in range(Defines.slowAdc.count):
+            self.updateSlowAdc(i)
+        if self.det.type == detectorType.CHIPTESTBOARD:
+            self.updateTemperature()
+
+    def updateSlowAdcNames(self):
+        for i, name in enumerate(self.mainWindow.det.getSlowADCNames()):
+            getattr(self.view, f"labelSlowAdc{i}").setText(name)
+
+    def updateSlowAdc(self, i):
+        slowADCIndex = getattr(dacIndex, f"SLOW_ADC{i}")
+        label = getattr(self.view, f"labelSlowAdcValue{i}")
+        slowadc = (self.det.getSlowADC(slowADCIndex))[0] / 1000
+        label.setText(f'{slowadc:.2f} mV')
+
+    def updateTemperature(self):
+        slowadc = self.det.getTemperature(dacIndex.SLOW_ADC_TEMP)
+        self.view.labelTempValue.setText(f'{str(slowadc[0])} °C')

pyctbgui/pyctbgui/services/Transceiver.py

@@ -0,0 +1,273 @@
+from functools import partial
+from pathlib import Path
+
+import numpy as np
+from PyQt5 import QtWidgets, uic
+import pyqtgraph as pg
+from pyqtgraph import LegendItem
+
+from pyctbgui.utils import decoder
+from pyctbgui.utils.defines import Defines
+
+from pyctbgui.utils.bit_utils import bit_is_set, manipulate_bit
+import pyctbgui.utils.pixelmap as pm
+from pyctbgui.utils.recordOrApplyPedestal import recordOrApplyPedestal
+
+
+class TransceiverTab(QtWidgets.QWidget):
+
+    def __init__(self, parent):
+        super().__init__(parent)
+        uic.loadUi(Path(__file__).parent.parent / 'ui' / "transceiver.ui", parent)
+        self.view = parent
+        self.mainWindow = None
+        self.det = None
+        self.plotTab = None
+        self.legend: LegendItem | None = None
+        self.acquisitionTab = None
+
+    def setup_ui(self):
+        self.plotTab = self.mainWindow.plotTab
+        self.acquisitionTab = self.mainWindow.acquisitionTab
+        for i in range(Defines.transceiver.count):
+            self.setTransceiverButtonColor(i, self.plotTab.getRandomColor())
+        self.initializeAllTransceiverPlots()
+
+        self.legend = self.mainWindow.plotTransceiverWaveform.getPlotItem().legend
+        self.legend.clear()
+
+        # subscribe to toggle legend
+        self.plotTab.subscribeToggleLegend(self.updateLegend)
+
+    def connect_ui(self):
+        for i in range(Defines.transceiver.count):
+            getattr(self.view, f"checkBoxTransceiver{i}").stateChanged.connect(partial(self.setTransceiverEnable, i))
+            getattr(self.view,
+                    f"checkBoxTransceiver{i}Plot").stateChanged.connect(partial(self.setTransceiverEnablePlot, i))
+            getattr(self.view, f"pushButtonTransceiver{i}").clicked.connect(partial(self.selectTransceiverColor, i))
+        self.view.lineEditTransceiverMask.editingFinished.connect(self.setTransceiverEnableReg)
+
+    def refresh(self):
+        self.updateTransceiverEnable()
+
+    def getEnabledPlots(self):
+        """
+        return plots that are shown (checkBoxTransceiver{i}Plot is checked)
+        """
+        enabledPlots = []
+        self.legend.clear()
+        for i in range(Defines.transceiver.count):
+            if getattr(self.view, f'checkBoxTransceiver{i}Plot').isChecked():
+                plotName = getattr(self.view, f"labelTransceiver{i}").text()
+                enabledPlots.append((self.mainWindow.transceiverPlots[i], plotName))
+        return enabledPlots
+
+    def updateLegend(self):
+        """
+        update the legend for the transceiver waveform plot
+        should be called after checking or unchecking plot checkbox
+        """
+        if not self.mainWindow.showLegend:
+            self.legend.clear()
+        else:
+            for plot, name in self.getEnabledPlots():
+                self.legend.addItem(plot, name)
+
+    @recordOrApplyPedestal
+    def _processWaveformData(self, data, dSamples, romode, nDBitEnabled, nTransceiverEnabled):
+        """
+        model function
+        processes raw receiver waveform data
+        @param data: raw receiver waveform data
+        @param dSamples: digital samples
+        @param romode: readout mode value
+        @param nDBitEnabled: number of digital bits enabled
+        @param nTransceiverEnabled: number of transceivers enabled
+        @return: processed transceiver data
+        """
+        transceiverOffset = 0
+        if romode == 4:
+            nbitsPerDBit = dSamples
+            if dSamples % 8 != 0:
+                nbitsPerDBit += (8 - (dSamples % 8))
+            transceiverOffset += nDBitEnabled * (nbitsPerDBit // 8)
+        trans_array = np.array(np.frombuffer(data, offset=transceiverOffset, dtype=np.uint16))
+        return trans_array.reshape(-1, nTransceiverEnabled)
+
+    def processWaveformData(self, data, dSamples):
+        """
+        plots raw waveform data
+        data: raw waveform data
+        dsamples: digital samples
+        tsamples: transceiver samples
+        """
+        waveforms = {}
+        trans_array = self._processWaveformData(data, dSamples, self.mainWindow.romode.value,
+                                                self.mainWindow.nDBitEnabled, self.nTransceiverEnabled)
+        idx = 0
+        for i in range(Defines.transceiver.count):
+            checkBoxPlot = getattr(self.view, f"checkBoxTransceiver{i}Plot")
+            checkBoxEn = getattr(self.view, f"checkBoxTransceiver{i}")
+            if checkBoxEn.isChecked() and checkBoxPlot.isChecked():
+                waveform = trans_array[:, idx]
+                idx += 1
+                self.mainWindow.transceiverPlots[i].setData(waveform)
+                plotName = getattr(self.view, f"labelTransceiver{i}").text()
+                waveforms[plotName] = waveform
+        return waveforms
+
+    @recordOrApplyPedestal
+    def _processImageData(self, data, dSamples, romode, nDBitEnabled):
+        """
+        processes raw image data
+        @param data:
+        @param dSamples:
+        @param romode:
+        @param nDBitEnabled:
+        @return:
+        """
+        transceiverOffset = 0
+        if romode == 4:
+            nbitsPerDBit = dSamples
+            if dSamples % 8 != 0:
+                nbitsPerDBit += (8 - (dSamples % 8))
+            transceiverOffset += nDBitEnabled * (nbitsPerDBit // 8)
+        trans_array = np.array(np.frombuffer(data, offset=transceiverOffset, dtype=np.uint16))
+        return decoder.decode(trans_array, pm.matterhorn_transceiver())
+
+    def processImageData(self, data, dSamples):
+        """
+        view function
+        plots transceiver image
+        dSamples: digital samples
+        data: raw image data
+        """
+        # get zoom state
+        viewBox = self.mainWindow.plotTransceiverImage.getView()
+        state = viewBox.getState()
+        try:
+            self.mainWindow.transceiver_frame = self._processImageData(data, dSamples, self.mainWindow.romode.value,
+                                                                       self.mainWindow.nDBitEnabled)
+            self.plotTab.ignoreHistogramSignal = True
+            self.mainWindow.plotTransceiverImage.setImage(self.mainWindow.transceiver_frame)
+        except Exception:
+            self.mainWindow.statusbar.setStyleSheet("color:red")
+            message = f'Warning: Invalid size for Transceiver Image. Expected' \
+                      f' {self.mainWindow.nTransceiverRows * self.mainWindow.nTransceiverCols} size,' \
+                      f' got {self.mainWindow.transceiver_frame.size} instead.'
+            self.acquisitionTab.updateCurrentFrame('Invalid Image')
+            self.mainWindow.statusbar.showMessage(message)
+            print(message)
+
+        self.plotTab.setFrameLimits(self.mainWindow.transceiver_frame)
+
+        # keep the zoomed in state (not 1st image)
+        if self.mainWindow.firstTransceiverImage:
+            self.mainWindow.firstTransceiverImage = False
+        else:
+            viewBox.setState(state)
+        return self.mainWindow.transceiver_frame
+
+    def initializeAllTransceiverPlots(self):
+        self.mainWindow.plotTransceiverWaveform = pg.plot()
+        self.mainWindow.plotTransceiverWaveform.addLegend(colCount=Defines.colCount)
+        self.mainWindow.verticalLayoutPlot.addWidget(self.mainWindow.plotTransceiverWaveform, 5)
+        self.mainWindow.transceiverPlots = {}
+        waveform = np.zeros(1000)
+        for i in range(Defines.transceiver.count):
+            pen = pg.mkPen(color=self.getTransceiverButtonColor(i), width=1)
+            legendName = getattr(self.view, f"labelTransceiver{i}").text()
+            self.mainWindow.transceiverPlots[i] = self.mainWindow.plotTransceiverWaveform.plot(waveform,
+                                                                                               pen=pen,
+                                                                                               name=legendName)
+            self.mainWindow.transceiverPlots[i].hide()
+
+        self.mainWindow.plotTransceiverImage = pg.ImageView()
+        self.mainWindow.nTransceiverRows = 0
+        self.mainWindow.nTransceiverCols = 0
+        self.mainWindow.transceiver_frame = np.zeros(
+            (self.mainWindow.nTransceiverRows, self.mainWindow.nTransceiverCols))
+        self.mainWindow.plotTransceiverImage.setImage(self.mainWindow.transceiver_frame)
+        self.mainWindow.verticalLayoutPlot.addWidget(self.mainWindow.plotTransceiverImage, 6)
+
+        cm = pg.colormap.get('CET-L9')  # prepare a linear color map
+        self.mainWindow.plotTransceiverImage.setColorMap(cm)
+
+    def getTransceiverEnableReg(self):
+        retval = self.det.transceiverenable
+        self.view.lineEditTransceiverMask.editingFinished.disconnect()
+        self.view.lineEditTransceiverMask.setText("0x{:08x}".format(retval))
+        self.view.lineEditTransceiverMask.editingFinished.connect(self.setTransceiverEnableReg)
+        return retval
+
+    def setTransceiverEnableReg(self):
+        self.view.lineEditTransceiverMask.editingFinished.disconnect()
+        try:
+            mask = int(self.view.lineEditTransceiverMask.text(), 16)
+            self.det.transceiverenable = mask
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Transceiver Enable Fail", str(e), QtWidgets.QMessageBox.Ok)
+            pass
+        # TODO: handling double event exceptions
+        self.view.lineEditTransceiverMask.editingFinished.connect(self.setTransceiverEnableReg)
+        self.updateTransceiverEnable()
+
+    def getTransceiverEnable(self, i, mask):
+        checkBox = getattr(self.view, f"checkBoxTransceiver{i}")
+        checkBox.stateChanged.disconnect()
+        checkBox.setChecked(bit_is_set(mask, i))
+        checkBox.stateChanged.connect(partial(self.setTransceiverEnable, i))
+
+    def updateTransceiverEnable(self):
+        retval = self.getTransceiverEnableReg()
+        self.nTransceiverEnabled = bin(retval).count('1')
+        for i in range(4):
+            self.getTransceiverEnable(i, retval)
+            self.getTransceiverEnablePlot(i)
+            self.getTransceiverEnableColor(i)
+            self.plotTab.addSelectedTransceiverPlots(i)
+
+    def setTransceiverEnable(self, i):
+        checkBox = getattr(self.view, f"checkBoxTransceiver{i}")
+        try:
+            enableMask = manipulate_bit(checkBox.isChecked(), self.det.transceiverenable, i)
+            self.det.transceiverenable = enableMask
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self.mainWindow, "Transceiver Enable Fail", str(e), QtWidgets.QMessageBox.Ok)
+            pass
+
+        self.updateTransceiverEnable()
+
+    def getTransceiverEnablePlot(self, i):
+        checkBox = getattr(self.view, f"checkBoxTransceiver{i}")
+        checkBoxPlot = getattr(self.view, f"checkBoxTransceiver{i}Plot")
+        checkBoxPlot.setEnabled(checkBox.isChecked())
+
+    def setTransceiverEnablePlot(self, i):
+        pushButton = getattr(self.view, f"pushButtonTransceiver{i}")
+        checkBox = getattr(self.view, f"checkBoxTransceiver{i}Plot")
+        pushButton.setEnabled(checkBox.isChecked())
+        self.plotTab.addSelectedTransceiverPlots(i)
+        self.updateLegend()
+
+    def getTransceiverEnableColor(self, i):
+        checkBox = getattr(self.view, f"checkBoxTransceiver{i}Plot")
+        pushButton = getattr(self.view, f"pushButtonTransceiver{i}")
+        pushButton.setEnabled(checkBox.isEnabled() and checkBox.isChecked())
+
+    def selectTransceiverColor(self, i):
+        pushButton = getattr(self.view, f"pushButtonTransceiver{i}")
+        self.plotTab.showPalette(pushButton)
+        pen = pg.mkPen(color=self.getTransceiverButtonColor(i), width=1)
+        self.mainWindow.transceiverPlots[i].setPen(pen)
+
+    def getTransceiverButtonColor(self, i):
+        pushButton = getattr(self.view, f"pushButtonTransceiver{i}")
+        return self.plotTab.getActiveColor(pushButton)
+
+    def setTransceiverButtonColor(self, i, color):
+        pushButton = getattr(self.view, f"pushButtonTransceiver{i}")
+        return self.plotTab.setActiveColor(pushButton, color)
+
+    def saveParameters(self):
+        return ["transceiverenable {}".format(self.view.lineEditTransceiverMask.text())]

pyctbgui/pyctbgui/services/__init__.py

@@ -0,0 +1,9 @@
+from .ADC import AdcTab
+from .Acquisition import AcquisitionTab
+from .DACs import DacTab
+from .Pattern import PatternTab
+from .Plot import PlotTab
+from .PowerSupplies import PowerSuppliesTab
+from .Signals import SignalsTab
+from .SlowADCs import SlowAdcTab
+from .Transceiver import TransceiverTab

pyctbgui/pyctbgui/ui/CtbGui.ui

@@ -0,0 +1,779 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>MainWindow</class>
+ <widget class="QMainWindow" name="MainWindow">
+  <property name="geometry">
+   <rect>
+    <x>0</x>
+    <y>0</y>
+    <width>1444</width>
+    <height>943</height>
+   </rect>
+  </property>
+  <property name="windowTitle">
+   <string>Chip Test Board</string>
+  </property>
+  <property name="dockNestingEnabled">
+   <bool>false</bool>
+  </property>
+  <widget class="QWidget" name="centralwidget">
+   <property name="minimumSize">
+    <size>
+     <width>870</width>
+     <height>890</height>
+    </size>
+   </property>
+   <property name="maximumSize">
+    <size>
+     <width>870</width>
+     <height>890</height>
+    </size>
+   </property>
+   <layout class="QVBoxLayout" name="verticalLayout">
+    <property name="spacing">
+     <number>9</number>
+    </property>
+    <property name="leftMargin">
+     <number>0</number>
+    </property>
+    <property name="topMargin">
+     <number>0</number>
+    </property>
+    <property name="rightMargin">
+     <number>0</number>
+    </property>
+    <property name="bottomMargin">
+     <number>0</number>
+    </property>
+    <item>
+     <widget class="QScrollArea" name="scrollArea">
+      <property name="minimumSize">
+       <size>
+        <width>50</width>
+        <height>0</height>
+       </size>
+      </property>
+      <property name="frameShadow">
+       <enum>QFrame::Plain</enum>
+      </property>
+      <property name="widgetResizable">
+       <bool>true</bool>
+      </property>
+      <widget class="QWidget" name="scrollAreaWidgetContents">
+       <property name="geometry">
+        <rect>
+         <x>0</x>
+         <y>0</y>
+         <width>870</width>
+         <height>879</height>
+        </rect>
+       </property>
+       <property name="styleSheet">
+        <string notr="true"/>
+       </property>
+       <layout class="QVBoxLayout" name="verticalLayout_2">
+        <property name="leftMargin">
+         <number>0</number>
+        </property>
+        <property name="topMargin">
+         <number>0</number>
+        </property>
+        <property name="rightMargin">
+         <number>0</number>
+        </property>
+        <property name="bottomMargin">
+         <number>0</number>
+        </property>
+        <item>
+         <widget class="QFrame" name="frameControl">
+          <property name="minimumSize">
+           <size>
+            <width>0</width>
+            <height>0</height>
+           </size>
+          </property>
+          <property name="maximumSize">
+           <size>
+            <width>16777215</width>
+            <height>16777215</height>
+           </size>
+          </property>
+          <property name="frameShape">
+           <enum>QFrame::NoFrame</enum>
+          </property>
+          <property name="frameShadow">
+           <enum>QFrame::Plain</enum>
+          </property>
+          <property name="lineWidth">
+           <number>0</number>
+          </property>
+          <layout class="QGridLayout" name="gridLayout_10">
+           <property name="leftMargin">
+            <number>0</number>
+           </property>
+           <property name="topMargin">
+            <number>9</number>
+           </property>
+           <property name="rightMargin">
+            <number>0</number>
+           </property>
+           <property name="bottomMargin">
+            <number>0</number>
+           </property>
+           <item row="0" column="0">
+            <widget class="QTabWidget" name="tabWidget">
+             <property name="minimumSize">
+              <size>
+               <width>870</width>
+               <height>870</height>
+              </size>
+             </property>
+             <property name="maximumSize">
+              <size>
+               <width>870</width>
+               <height>870</height>
+              </size>
+             </property>
+             <property name="currentIndex">
+              <number>0</number>
+             </property>
+             <widget class="QWidget" name="tabDac">
+              <attribute name="title">
+               <string>DACs</string>
+              </attribute>
+              <widget class="DacTab" name="widgetDacs" native="true">
+               <property name="geometry">
+                <rect>
+                 <x>0</x>
+                 <y>0</y>
+                 <width>851</width>
+                 <height>841</height>
+                </rect>
+               </property>
+               <property name="minimumSize">
+                <size>
+                 <width>711</width>
+                 <height>791</height>
+                </size>
+               </property>
+              </widget>
+             </widget>
+             <widget class="QWidget" name="tabPower">
+              <attribute name="title">
+               <string>Power Supplies</string>
+              </attribute>
+              <widget class="PowerSuppliesTab" name="widgetPowerSupplies" native="true">
+               <property name="geometry">
+                <rect>
+                 <x>-1</x>
+                 <y>-1</y>
+                 <width>841</width>
+                 <height>821</height>
+                </rect>
+               </property>
+              </widget>
+             </widget>
+             <widget class="QWidget" name="tabSlowAdc">
+              <attribute name="title">
+               <string>Slow ADCs</string>
+              </attribute>
+              <widget class="SlowAdcTab" name="widgetSlowAdcs" native="true">
+               <property name="geometry">
+                <rect>
+                 <x>0</x>
+                 <y>0</y>
+                 <width>871</width>
+                 <height>821</height>
+                </rect>
+               </property>
+               <property name="minimumSize">
+                <size>
+                 <width>871</width>
+                 <height>571</height>
+                </size>
+               </property>
+              </widget>
+             </widget>
+             <widget class="QWidget" name="tabSignal">
+              <attribute name="title">
+               <string>Signals</string>
+              </attribute>
+              <widget class="SignalsTab" name="widgetSignals" native="true">
+               <property name="geometry">
+                <rect>
+                 <x>0</x>
+                 <y>0</y>
+                 <width>831</width>
+                 <height>821</height>
+                </rect>
+               </property>
+               <property name="minimumSize">
+                <size>
+                 <width>831</width>
+                 <height>821</height>
+                </size>
+               </property>
+              </widget>
+             </widget>
+             <widget class="QWidget" name="tabTransceivers">
+              <attribute name="title">
+               <string>Transceivers</string>
+              </attribute>
+              <widget class="TransceiverTab" name="widgetTransceiver" native="true">
+               <property name="geometry">
+                <rect>
+                 <x>9</x>
+                 <y>19</y>
+                 <width>841</width>
+                 <height>341</height>
+                </rect>
+               </property>
+               <property name="minimumSize">
+                <size>
+                 <width>841</width>
+                 <height>181</height>
+                </size>
+               </property>
+              </widget>
+             </widget>
+             <widget class="QWidget" name="tabAdc">
+              <attribute name="title">
+               <string>ADCs</string>
+              </attribute>
+              <widget class="AdcTab" name="widgetAdc" native="true">
+               <property name="geometry">
+                <rect>
+                 <x>-1</x>
+                 <y>-1</y>
+                 <width>841</width>
+                 <height>821</height>
+                </rect>
+               </property>
+              </widget>
+             </widget>
+             <widget class="QWidget" name="tabPattern">
+              <attribute name="title">
+               <string>Pattern</string>
+              </attribute>
+              <widget class="PatternTab" name="widgetPattern" native="true">
+               <property name="geometry">
+                <rect>
+                 <x>0</x>
+                 <y>0</y>
+                 <width>851</width>
+                 <height>831</height>
+                </rect>
+               </property>
+              </widget>
+             </widget>
+             <widget class="QWidget" name="tabAcquisition">
+              <attribute name="title">
+               <string>Acquisition</string>
+              </attribute>
+              <widget class="AcquisitionTab" name="widgetAcquisition" native="true">
+               <property name="geometry">
+                <rect>
+                 <x>-10</x>
+                 <y>0</y>
+                 <width>860</width>
+                 <height>800</height>
+                </rect>
+               </property>
+               <property name="minimumSize">
+                <size>
+                 <width>860</width>
+                 <height>800</height>
+                </size>
+               </property>
+              </widget>
+             </widget>
+             <widget class="QWidget" name="tabPlot">
+              <attribute name="title">
+               <string>Plot</string>
+              </attribute>
+              <widget class="PlotTab" name="widgetPlot" native="true">
+               <property name="geometry">
+                <rect>
+                 <x>0</x>
+                 <y>0</y>
+                 <width>860</width>
+                 <height>800</height>
+                </rect>
+               </property>
+               <property name="minimumSize">
+                <size>
+                 <width>860</width>
+                 <height>800</height>
+                </size>
+               </property>
+              </widget>
+             </widget>
+            </widget>
+           </item>
+          </layout>
+         </widget>
+        </item>
+       </layout>
+      </widget>
+     </widget>
+    </item>
+   </layout>
+  </widget>
+  <widget class="QMenuBar" name="menubar">
+   <property name="geometry">
+    <rect>
+     <x>0</x>
+     <y>0</y>
+     <width>1444</width>
+     <height>25</height>
+    </rect>
+   </property>
+   <widget class="QMenu" name="menuFile">
+    <property name="title">
+     <string>File</string>
+    </property>
+    <addaction name="actionLoadParameters"/>
+    <addaction name="actionSaveParameters"/>
+    <addaction name="actionExit"/>
+   </widget>
+   <widget class="QMenu" name="menuHelp">
+    <property name="title">
+     <string>Help</string>
+    </property>
+    <addaction name="actionInfo"/>
+    <addaction name="actionKeyboardShortcuts"/>
+   </widget>
+   <addaction name="menuFile"/>
+   <addaction name="menuHelp"/>
+  </widget>
+  <widget class="QStatusBar" name="statusbar"/>
+  <widget class="QDockWidget" name="dockWidget">
+   <property name="sizePolicy">
+    <sizepolicy hsizetype="Minimum" vsizetype="Minimum">
+     <horstretch>0</horstretch>
+     <verstretch>0</verstretch>
+    </sizepolicy>
+   </property>
+   <property name="minimumSize">
+    <size>
+     <width>568</width>
+     <height>214</height>
+    </size>
+   </property>
+   <property name="maximumSize">
+    <size>
+     <width>524287</width>
+     <height>524287</height>
+    </size>
+   </property>
+   <property name="features">
+    <set>QDockWidget::DockWidgetFloatable|QDockWidget::DockWidgetMovable</set>
+   </property>
+   <property name="allowedAreas">
+    <set>Qt::RightDockWidgetArea</set>
+   </property>
+   <attribute name="dockWidgetArea">
+    <number>2</number>
+   </attribute>
+   <widget class="QWidget" name="dockWidgetContent">
+    <layout class="QGridLayout" name="gridLayout_7">
+     <item row="0" column="0" colspan="2">
+      <widget class="QFrame" name="frameAcquisition">
+       <property name="maximumSize">
+        <size>
+         <width>16777215</width>
+         <height>100</height>
+        </size>
+       </property>
+       <property name="frameShape">
+        <enum>QFrame::StyledPanel</enum>
+       </property>
+       <property name="frameShadow">
+        <enum>QFrame::Raised</enum>
+       </property>
+       <layout class="QGridLayout" name="gridLayout_25">
+        <item row="1" column="2">
+         <widget class="QLabel" name="labelCurrentMeasurement">
+          <property name="minimumSize">
+           <size>
+            <width>70</width>
+            <height>0</height>
+           </size>
+          </property>
+          <property name="maximumSize">
+           <size>
+            <width>70</width>
+            <height>16777215</height>
+           </size>
+          </property>
+          <property name="text">
+           <string>0</string>
+          </property>
+         </widget>
+        </item>
+        <item row="0" column="1" colspan="5">
+         <widget class="QProgressBar" name="progressBar">
+          <property name="minimumSize">
+           <size>
+            <width>100</width>
+            <height>0</height>
+           </size>
+          </property>
+          <property name="value">
+           <number>24</number>
+          </property>
+         </widget>
+        </item>
+        <item row="0" column="0">
+         <widget class="QPushButton" name="pushButtonStart">
+          <property name="minimumSize">
+           <size>
+            <width>0</width>
+            <height>36</height>
+           </size>
+          </property>
+          <property name="maximumSize">
+           <size>
+            <width>100</width>
+            <height>16777215</height>
+           </size>
+          </property>
+          <property name="palette">
+           <palette>
+            <active>
+             <colorrole role="Button">
+              <brush brushstyle="SolidPattern">
+               <color alpha="255">
+                <red>85</red>
+                <green>170</green>
+                <blue>127</blue>
+               </color>
+              </brush>
+             </colorrole>
+             <colorrole role="Base">
+              <brush brushstyle="SolidPattern">
+               <color alpha="255">
+                <red>85</red>
+                <green>170</green>
+                <blue>127</blue>
+               </color>
+              </brush>
+             </colorrole>
+             <colorrole role="Window">
+              <brush brushstyle="SolidPattern">
+               <color alpha="255">
+                <red>85</red>
+                <green>170</green>
+                <blue>127</blue>
+               </color>
+              </brush>
+             </colorrole>
+            </active>
+            <inactive>
+             <colorrole role="Button">
+              <brush brushstyle="SolidPattern">
+               <color alpha="255">
+                <red>85</red>
+                <green>170</green>
+                <blue>127</blue>
+               </color>
+              </brush>
+             </colorrole>
+             <colorrole role="Base">
+              <brush brushstyle="SolidPattern">
+               <color alpha="255">
+                <red>85</red>
+                <green>170</green>
+                <blue>127</blue>
+               </color>
+              </brush>
+             </colorrole>
+             <colorrole role="Window">
+              <brush brushstyle="SolidPattern">
+               <color alpha="255">
+                <red>85</red>
+                <green>170</green>
+                <blue>127</blue>
+               </color>
+              </brush>
+             </colorrole>
+            </inactive>
+            <disabled>
+             <colorrole role="Button">
+              <brush brushstyle="SolidPattern">
+               <color alpha="255">
+                <red>85</red>
+                <green>170</green>
+                <blue>127</blue>
+               </color>
+              </brush>
+             </colorrole>
+             <colorrole role="Base">
+              <brush brushstyle="SolidPattern">
+               <color alpha="255">
+                <red>85</red>
+                <green>170</green>
+                <blue>127</blue>
+               </color>
+              </brush>
+             </colorrole>
+             <colorrole role="Window">
+              <brush brushstyle="SolidPattern">
+               <color alpha="255">
+                <red>85</red>
+                <green>170</green>
+                <blue>127</blue>
+               </color>
+              </brush>
+             </colorrole>
+            </disabled>
+           </palette>
+          </property>
+          <property name="toolTip">
+           <string>Shift + Enter is the keyboard shortcut to start/stop acquisition from any tab</string>
+          </property>
+          <property name="styleSheet">
+           <string notr="true">QPushButton {background-color: rgb(85, 170, 127);} 
+QPushButton:checked{background-color: red;}</string>
+          </property>
+          <property name="text">
+           <string>Start</string>
+          </property>
+          <property name="checkable">
+           <bool>true</bool>
+          </property>
+         </widget>
+        </item>
+        <item row="1" column="0">
+         <widget class="QLabel" name="labelDetectorStatus">
+          <property name="minimumSize">
+           <size>
+            <width>110</width>
+            <height>0</height>
+           </size>
+          </property>
+          <property name="text">
+           <string>IDLE</string>
+          </property>
+          <property name="alignment">
+           <set>Qt::AlignCenter</set>
+          </property>
+         </widget>
+        </item>
+        <item row="1" column="4">
+         <widget class="QLabel" name="label_137">
+          <property name="minimumSize">
+           <size>
+            <width>0</width>
+            <height>0</height>
+           </size>
+          </property>
+          <property name="maximumSize">
+           <size>
+            <width>70</width>
+            <height>16777215</height>
+           </size>
+          </property>
+          <property name="text">
+           <string>Acquired:</string>
+          </property>
+         </widget>
+        </item>
+        <item row="1" column="5">
+         <widget class="QLabel" name="labelAcquiredFrames">
+          <property name="minimumSize">
+           <size>
+            <width>70</width>
+            <height>0</height>
+           </size>
+          </property>
+          <property name="maximumSize">
+           <size>
+            <width>70</width>
+            <height>16777215</height>
+           </size>
+          </property>
+          <property name="text">
+           <string>0</string>
+          </property>
+         </widget>
+        </item>
+        <item row="1" column="1">
+         <widget class="QLabel" name="label_134">
+          <property name="minimumSize">
+           <size>
+            <width>0</width>
+            <height>0</height>
+           </size>
+          </property>
+          <property name="maximumSize">
+           <size>
+            <width>100</width>
+            <height>16777215</height>
+           </size>
+          </property>
+          <property name="text">
+           <string>Measurement:</string>
+          </property>
+         </widget>
+        </item>
+        <item row="1" column="3">
+         <spacer name="horizontalSpacer_24">
+          <property name="orientation">
+           <enum>Qt::Horizontal</enum>
+          </property>
+          <property name="sizeHint" stdset="0">
+           <size>
+            <width>40</width>
+            <height>20</height>
+           </size>
+          </property>
+         </spacer>
+        </item>
+       </layout>
+      </widget>
+     </item>
+     <item row="1" column="0" colspan="2">
+      <layout class="QHBoxLayout" name="horizontalLayout">
+       <item>
+        <widget class="QFrame" name="framePatternViewer">
+         <property name="frameShape">
+          <enum>QFrame::StyledPanel</enum>
+         </property>
+         <property name="frameShadow">
+          <enum>QFrame::Raised</enum>
+         </property>
+         <layout class="QGridLayout" name="gridLayoutPatternViewer"/>
+        </widget>
+       </item>
+       <item>
+        <widget class="QFrame" name="framePlot">
+         <property name="frameShape">
+          <enum>QFrame::StyledPanel</enum>
+         </property>
+         <property name="frameShadow">
+          <enum>QFrame::Raised</enum>
+         </property>
+         <layout class="QVBoxLayout" name="verticalLayoutPlot">
+          <item>
+           <widget class="QLabel" name="labelFrameNumber">
+            <property name="text">
+             <string>#</string>
+            </property>
+           </widget>
+          </item>
+         </layout>
+        </widget>
+       </item>
+      </layout>
+     </item>
+    </layout>
+   </widget>
+  </widget>
+  <action name="actionLoadParameters">
+   <property name="text">
+    <string>Load Parameters</string>
+   </property>
+  </action>
+  <action name="actionSave">
+   <property name="text">
+    <string>Save</string>
+   </property>
+  </action>
+  <action name="actionExit">
+   <property name="text">
+    <string>Exit</string>
+   </property>
+  </action>
+  <action name="actionInfo">
+   <property name="text">
+    <string>Info</string>
+   </property>
+  </action>
+  <action name="actionKeyboardShortcuts">
+   <property name="text">
+    <string>Keyboard Shortcuts</string>
+   </property>
+  </action>
+  <action name="actionSaveParameters">
+   <property name="text">
+    <string>Save Parameters</string>
+   </property>
+  </action>
+ </widget>
+ <customwidgets>
+  <customwidget>
+   <class>PowerSuppliesTab</class>
+   <extends>QWidget</extends>
+   <header>pyctbgui.services.PowerSupplies</header>
+   <container>1</container>
+  </customwidget>
+  <customwidget>
+   <class>DacTab</class>
+   <extends>QWidget</extends>
+   <header>pyctbgui.services.DACs</header>
+   <container>1</container>
+  </customwidget>
+  <customwidget>
+   <class>SlowAdcTab</class>
+   <extends>QWidget</extends>
+   <header>pyctbgui.services.SlowADCs</header>
+   <container>1</container>
+  </customwidget>
+  <customwidget>
+   <class>SignalsTab</class>
+   <extends>QWidget</extends>
+   <header>pyctbgui.services.Signals</header>
+   <container>1</container>
+  </customwidget>
+  <customwidget>
+   <class>TransceiverTab</class>
+   <extends>QWidget</extends>
+   <header>pyctbgui.services.Transceiver</header>
+   <container>1</container>
+  </customwidget>
+  <customwidget>
+   <class>AdcTab</class>
+   <extends>QWidget</extends>
+   <header>pyctbgui.services.ADC</header>
+   <container>1</container>
+  </customwidget>
+  <customwidget>
+   <class>PatternTab</class>
+   <extends>QWidget</extends>
+   <header>pyctbgui.services.Pattern</header>
+   <container>1</container>
+  </customwidget>
+  <customwidget>
+   <class>AcquisitionTab</class>
+   <extends>QWidget</extends>
+   <header>pyctbgui.services.Acquisition</header>
+   <container>1</container>
+  </customwidget>
+  <customwidget>
+   <class>PlotTab</class>
+   <extends>QWidget</extends>
+   <header>pyctbgui.services.Plot</header>
+   <container>1</container>
+  </customwidget>
+ </customwidgets>
+ <resources/>
+ <connections>
+  <connection>
+   <sender>actionExit</sender>
+   <signal>triggered()</signal>
+   <receiver>MainWindow</receiver>
+   <slot>close()</slot>
+   <hints>
+    <hint type="sourcelabel">
+     <x>-1</x>
+     <y>-1</y>
+    </hint>
+    <hint type="destinationlabel">
+     <x>753</x>
+     <y>496</y>
+    </hint>
+   </hints>
+  </connection>
+ </connections>
+</ui>

pyctbgui/pyctbgui/ui/MainWindow.py

@@ -0,0 +1,369 @@
+import logging
+
+from PyQt5 import QtWidgets, QtCore, uic
+import argparse
+import signal
+import pyqtgraph as pg
+from pathlib import Path
+from functools import partial
+
+from slsdet import Detector, dacIndex
+
+from pyctbgui.services import TransceiverTab, DacTab, AdcTab, AcquisitionTab, SignalsTab, PatternTab, \
+    SlowAdcTab, PlotTab, PowerSuppliesTab
+from pyctbgui.utils import alias_utility
+from pyctbgui.utils.defines import Defines
+
+
+class MainWindow(QtWidgets.QMainWindow):
+    signalShortcutAcquire = QtCore.pyqtSignal()
+    signalShortcutTabUp = QtCore.pyqtSignal()
+    signalShortcutTabDown = QtCore.pyqtSignal()
+
+    def __init__(self, *args, **kwargs):
+        parser = argparse.ArgumentParser()
+        parser.add_argument('-a', '--alias', help="Alias file complete path")
+        arglist, __ = parser.parse_known_args()
+        self.alias_file = arglist.alias
+
+        pg.setConfigOption("background", (247, 247, 247))
+        pg.setConfigOption("foreground", "k")
+        pg.setConfigOption('leftButtonPan', False)
+
+        super().__init__(*args, **kwargs)
+
+        uic.loadUi(Path(__file__).parent / "CtbGui.ui", self)
+        logging.basicConfig(encoding='utf-8', level=logging.INFO)
+
+        self.logger = logging.getLogger(__name__)
+        self.det = None
+        self.showLegend = True
+        self.settings = None
+        try:
+            self.det = Detector()
+            # ensure detector is up
+            self.det.detectorserverversion[0]
+        except Exception as e:
+            QtWidgets.QMessageBox.critical(self, "Connect Fail", str(e) + "Exiting Gui...", QtWidgets.QMessageBox.Ok)
+            raise
+
+        # get Tab Classes
+        self.plotTab: PlotTab = self.widgetPlot
+        self.slowAdcTab: SlowAdcTab = self.widgetSlowAdcs
+        self.dacTab: DacTab = self.widgetDacs
+        self.powerSuppliesTab: PowerSuppliesTab = self.widgetPowerSupplies
+        self.signalsTab: SignalsTab = self.widgetSignals
+        self.transceiverTab: TransceiverTab = self.widgetTransceiver
+        self.adcTab: AdcTab = self.widgetAdc
+        self.patternTab: PatternTab = self.widgetPattern
+        self.acquisitionTab: AcquisitionTab = self.widgetAcquisition
+
+        self.tabs_list = [
+            self.dacTab, self.powerSuppliesTab, self.slowAdcTab, self.signalsTab, self.transceiverTab, self.adcTab,
+            self.patternTab, self.acquisitionTab, self.plotTab
+        ]
+
+        self.setup_ui()
+        self.acquisitionTab.setup_zmq()
+        self.tabWidget.setCurrentIndex(Defines.Acquisition_Tab_Index)
+        self.tabWidget.currentChanged.connect(self.refresh_tab)
+        self.connect_ui()
+
+        for tab in self.tabs_list:
+            tab.refresh()
+
+        # also refreshes timer to start plotting
+        self.plotTab.plotOptions()
+        self.plotTab.showPlot()
+
+        self.patternTab.getPatViewerColors()
+        self.patternTab.getPatViewerWaitParameters()
+        self.patternTab.getPatViewerLoopParameters()
+        self.patternTab.updatePatViewerParameters()
+        self.plotTab.showPatternViewer(False)
+
+        if self.alias_file is not None:
+            self.loadAliasFile()
+
+        self.signalShortcutAcquire.connect(self.pushButtonStart.click)
+        self.signalShortcutTabUp.connect(partial(self.changeTabIndex, True))
+        self.signalShortcutTabDown.connect(partial(self.changeTabIndex, False))
+        # to catch the ctrl + c to abort
+        signal.signal(signal.SIGINT, signal.SIG_DFL)
+        self.firstAnalogImage = True
+        self.firstDigitalImage = True
+        self.firstTransceiverImage = True
+
+        self.updateSettingValues()
+
+    def updateSettingMainWindow(self):
+        self.settings.beginGroup("mainwindow")
+        # window size
+        width = self.settings.value('window_width')
+        height = self.settings.value('window_height')
+        if width is not None and height is not None:
+            self.resize(int(width), int(height))
+            # print(f'Main window resized to {width}x{height}')
+
+        # window position
+        pos = self.settings.value('window_pos')
+        if type(pos) is QtCore.QPoint:
+            # print(f'Moved main window to {pos}')
+            self.move(pos)
+        self.settings.endGroup()
+
+    def saveSettingMainWindow(self):
+        self.settings.beginGroup("mainwindow")
+        self.settings.setValue('window_width', self.rect().width())
+        self.settings.setValue('window_height', self.rect().height())
+        self.settings.setValue('window_pos', self.pos())
+        self.settings.endGroup()
+
+    def updateSettingDockWidget(self):
+        self.settings.beginGroup("dockwidget")
+
+        # is docked
+        if self.settings.contains('window_width') and self.settings.contains('window_height'):
+            # window size
+            width = self.settings.value('window_width')
+            height = self.settings.value('window_height')
+            if width is not None and height is not None:
+                # print(f'Plot window - Floating ({width}x{height})')
+                self.dockWidget.setFloating(True)
+                self.dockWidget.resize(int(width), int(height))
+            # window position
+            pos = self.settings.value('window_pos')
+            if type(pos) is QtCore.QPoint:
+                # print(f'Moved plot window to {pos}')
+                self.dockWidget.move(pos)
+        self.settings.endGroup()
+
+    def saveSettingDockWidget(self):
+        self.settings.beginGroup("dockwidget")
+        if self.dockWidget.isFloating():
+            self.settings.setValue('window_width', self.dockWidget.rect().width())
+            self.settings.setValue('window_height', self.dockWidget.rect().height())
+            self.settings.setValue('window_pos', self.dockWidget.pos())
+        else:
+            self.settings.remove('window_width')
+            self.settings.remove('window_height')
+            self.settings.remove('window_pos')
+        self.settings.endGroup()
+
+    def savePlotTypeAndDetector(self):
+        self.settings.setValue('isImage', self.plotTab.view.radioButtonImage.isChecked())
+        self.settings.setValue('detector', self.plotTab.view.comboBoxPlot.currentText())
+
+    def updatePlotTypeAndDetector(self):
+        # load plot type from qsettings
+        isImage = self.settings.value('isImage', True, type=bool)
+        self.plotTab.view.radioButtonImage.setChecked(isImage)
+        self.plotTab.plotOptions()
+        # load detector from qsettings
+        if isImage:
+            self.plotTab.view.comboBoxPlot.setCurrentText(self.settings.value('detector', 'Matterhorn'))
+
+    def updateSettingValues(self):
+        self.settings = QtCore.QSettings('slsdetectorgroup', 'pyctbgui')
+        self.updateSettingMainWindow()
+        self.updateSettingDockWidget()
+        self.updatePlotTypeAndDetector()
+
+    def saveSettings(self):
+        # store in ~/.config/slsdetectorgroup/pyctbgui.conf
+        self.saveSettingMainWindow()
+        self.saveSettingDockWidget()
+        self.savePlotTypeAndDetector()
+
+    def closeEvent(self, event):
+        self.saveSettings()
+
+    def loadAliasFile(self):
+        print(f'Loading Alias file: {self.alias_file}')
+        try:
+            bit_names, bit_plots, bit_colors, adc_names, adc_plots, adc_colors, dac_names, slowadc_names, \
+            voltage_names, pat_file_name = alias_utility.read_alias_file(self.alias_file)
+        except Exception as e:
+            QtWidgets.QMessageBox.warning(self, "Alias File Fail",
+                                          str(e) + "<br> " + self.alias_file, QtWidgets.QMessageBox.Ok)
+            return
+
+        for i in range(Defines.signals.count):
+            if bit_names[i]:
+                self.det.setSignalName(i, bit_names[i])
+            if bit_plots[i]:
+                getattr(self.signalsTab.view, f"checkBoxBIT{i}DB").setChecked(bit_plots[i])
+                getattr(self.signalsTab.view, f"checkBoxBIT{i}Plot").setChecked(bit_plots[i])
+            if bit_colors[i]:
+                self.signalsTab.setDBitButtonColor(i, bit_colors[i])
+
+        for i in range(Defines.adc.count):
+            if adc_names[i]:
+                self.det.setAdcName(i, adc_names[i])
+            if adc_plots[i]:
+                getattr(self.adcTab.view, f"checkBoxADC{i}En").setChecked(adc_plots[i])
+                getattr(self.adcTab.view, f"checkBoxADC{i}Plot").setChecked(adc_plots[i])
+            if adc_colors[i]:
+                self.adcTab.setADCButtonColor(i, adc_colors[i])
+
+        for i in range(Defines.dac.count):
+            if dac_names[i]:
+                iDac = getattr(dacIndex, f"DAC_{i}")
+                self.det.setDacName(iDac, dac_names[i])
+
+        for i in range(Defines.slowAdc.count):
+            slowadc_index = self.det.getSlowADCList()
+            if slowadc_names[i]:
+                self.det.setSlowADCName(slowadc_index[i], slowadc_names[i])
+
+        for i in range(len(Defines.powerSupplies)):
+            voltage_index = self.det.getVoltageList()
+            if voltage_names[i]:
+                self.det.setVoltageName(voltage_index[i], voltage_names[i])
+
+        if pat_file_name:
+            self.lineEditPatternFile.setText(pat_file_name)
+
+        self.signalsTab.updateSignalNames()
+        self.adcTab.updateADCNames()
+        self.slowAdcTab.updateSlowAdcNames()
+        self.dacTab.updateDACNames()
+        self.powerSuppliesTab.updateVoltageNames()
+
+    # For Action options function
+    # TODO Only add the components of action option+ functions
+    # Function to show info
+    def showInfo(self):
+        msg = QtWidgets.QMessageBox()
+        msg.setWindowTitle("About")
+        msg.setText("This Gui is for Chip Test Boards.\n Current Phase: Development")
+        msg.exec_()
+
+    def showKeyBoardShortcuts(self):
+        msg = QtWidgets.QMessageBox()
+        msg.setWindowTitle("Keyboard Shortcuts")
+        msg.setText(
+            "Start Acquisition (from any tab): Shift + Return<br>Move Tab Right : Ctrl + '+'<br>Move Tab Left :"
+            " Ctrl + '-'<br>")
+        msg.exec_()
+
+    def loadParameters(self):
+        response = QtWidgets.QFileDialog.getOpenFileName(
+            parent=self,
+            caption="Select a parameter file to open",
+            directory=str(Path.cwd()),
+            # filter='README (*.md *.ui)'
+        )
+        if response[0] == '':
+            return
+        try:
+            self.det.parameters = (response[0])
+            for tab in self.tabs_list:
+                tab.refresh()
+            QtWidgets.QMessageBox.information(self, "Load Parameter Success", "Parameters loaded successfully",
+                                              QtWidgets.QMessageBox.Ok)
+        except (RuntimeError, FileNotFoundError) as e:
+            self.logger.exception(e)
+            QtWidgets.QMessageBox.warning(self, "Load Parameter Fail", str(e), QtWidgets.QMessageBox.Ok)
+
+    def refresh_tab(self, tab_index):
+        match tab_index:
+            case 0:
+                self.dacTab.refresh()
+            case 1:
+                self.powerSuppliesTab.refresh()
+            case 2:
+                self.slowAdcTab.refresh()
+            case 3:
+                self.transceiverTab.refresh()
+            case 4:
+                self.signalsTab.refresh()
+            case 5:
+                self.adcTab.refresh()
+            case 6:
+                self.patternTab.refresh()
+            case 7:
+                self.acquisitionTab.refresh()
+            case 8:
+                self.plotTab.refresh()
+
+    def setup_ui(self):
+        # To check detector status
+        self.statusTimer = QtCore.QTimer()
+        self.statusTimer.timeout.connect(self.acquisitionTab.checkEndofAcquisition)
+
+        # To auto trigger the read
+        self.read_timer = QtCore.QTimer()
+        self.read_timer.timeout.connect(self.acquisitionTab.read_zmq)
+
+        for tab in self.tabs_list:
+            tab.mainWindow = self
+            tab.det = self.det
+
+        for tab in self.tabs_list:
+            tab.setup_ui()
+
+    def keyPressEvent(self, event):
+        if event.modifiers() & QtCore.Qt.ShiftModifier:
+            if event.key() == QtCore.Qt.Key_Return:
+                self.signalShortcutAcquire.emit()
+        if event.modifiers() & QtCore.Qt.ControlModifier:
+            if event.key() == QtCore.Qt.Key_Plus:
+                self.signalShortcutTabUp.emit()
+            if event.key() == QtCore.Qt.Key_Minus:
+                self.signalShortcutTabDown.emit()
+
+    def changeTabIndex(self, up):
+        ind = self.tabWidget.currentIndex()
+        if up:
+            ind += 1
+            if ind == Defines.Max_Tabs:
+                ind = 0
+        else:
+            ind -= 1
+            if ind == -1:
+                ind = Defines.Max_Tabs - 1
+        self.tabWidget.setCurrentIndex(ind)
+
+    def connect_ui(self):
+        # Show info
+        self.actionInfo.triggered.connect(self.showInfo)
+        self.actionKeyboardShortcuts.triggered.connect(self.showKeyBoardShortcuts)
+        self.actionLoadParameters.triggered.connect(self.loadParameters)
+        self.pushButtonStart.clicked.connect(self.acquisitionTab.toggleAcquire)
+        self.actionSaveParameters.triggered.connect(self.saveParameters)
+
+        for tab in self.tabs_list:
+            tab.connect_ui()
+
+    def saveParameters(self):
+        response = QtWidgets.QFileDialog.getSaveFileName(self, "Save Parameters", str(self.det.fpath))
+        if response[0] == '':
+            return
+
+        # save DACs
+        commands = self.dacTab.saveParameters()
+        # save signals
+        commands.extend(self.signalsTab.saveParameters())
+        # save transceiver
+        commands.extend(self.transceiverTab.saveParameters())
+        # save ADCs
+        commands.extend(self.adcTab.saveParameters())
+        # save pattern
+        commands.extend(self.patternTab.saveParameters())
+        # save acquisition
+        commands.extend(self.acquisitionTab.saveParameters())
+        # save power supplies
+        commands.extend(self.powerSuppliesTab.saveParameters())
+        # save plot
+        commands.extend(self.plotTab.saveParameters())
+
+        try:
+            with open(response[0], 'w') as fp:
+                fp.write('\n'.join(commands))
+        except Exception as e:
+            self.logger.exception(e)
+            QtWidgets.QMessageBox.warning(self, "Save Parameter Fail", str(e), QtWidgets.QMessageBox.Ok)
+
+        QtWidgets.QMessageBox.information(self, "Save Parameter Success", "Parameters saved successfully",
+                                          QtWidgets.QMessageBox.Ok)

pyctbgui/pyctbgui/ui/__init__.py

@@ -0,0 +1 @@
+from .MainWindow import MainWindow

pyctbgui/pyctbgui/ui/acquisition.ui

@@ -0,0 +1,927 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>Form</class>
+ <widget class="QWidget" name="Form">
+  <property name="geometry">
+   <rect>
+    <x>0</x>
+    <y>0</y>
+    <width>870</width>
+    <height>823</height>
+   </rect>
+  </property>
+  <property name="minimumSize">
+   <size>
+    <width>870</width>
+    <height>800</height>
+   </size>
+  </property>
+  <property name="windowTitle">
+   <string>Form</string>
+  </property>
+  <widget class="QFrame" name="frame_20">
+   <property name="geometry">
+    <rect>
+     <x>10</x>
+     <y>10</y>
+     <width>841</width>
+     <height>71</height>
+    </rect>
+   </property>
+   <property name="frameShape">
+    <enum>QFrame::StyledPanel</enum>
+   </property>
+   <property name="frameShadow">
+    <enum>QFrame::Sunken</enum>
+   </property>
+   <layout class="QGridLayout" name="gridLayout_19">
+    <item row="1" column="5">
+     <widget class="QSpinBox" name="spinBoxRunF">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="buttonSymbols">
+       <enum>QAbstractSpinBox::UpDownArrows</enum>
+      </property>
+      <property name="maximum">
+       <number>1000</number>
+      </property>
+      <property name="value">
+       <number>0</number>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="0">
+     <widget class="QLabel" name="label_398">
+      <property name="text">
+       <string>Read Out Mode: </string>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="2">
+     <widget class="QComboBox" name="comboBoxROMode">
+      <property name="minimumSize">
+       <size>
+        <width>0</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>16777215</width>
+        <height>32</height>
+       </size>
+      </property>
+      <item>
+       <property name="text">
+        <string>Analog</string>
+       </property>
+      </item>
+      <item>
+       <property name="text">
+        <string>Digital</string>
+       </property>
+      </item>
+      <item>
+       <property name="text">
+        <string>Analog and Digital</string>
+       </property>
+      </item>
+      <item>
+       <property name="text">
+        <string>Transceiver</string>
+       </property>
+      </item>
+      <item>
+       <property name="text">
+        <string>Digital and Transceiver</string>
+       </property>
+      </item>
+     </widget>
+    </item>
+    <item row="1" column="4">
+     <widget class="QLabel" name="labelRunF">
+      <property name="text">
+       <string>Run Clock Frequency (MHz):</string>
+      </property>
+     </widget>
+    </item>
+   </layout>
+  </widget>
+  <widget class="QFrame" name="frame_13">
+   <property name="geometry">
+    <rect>
+     <x>10</x>
+     <y>90</y>
+     <width>841</width>
+     <height>51</height>
+    </rect>
+   </property>
+   <property name="frameShape">
+    <enum>QFrame::StyledPanel</enum>
+   </property>
+   <property name="frameShadow">
+    <enum>QFrame::Raised</enum>
+   </property>
+   <layout class="QGridLayout" name="gridLayout_24">
+    <item row="0" column="1">
+     <widget class="QSpinBox" name="spinBoxTransceiver">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>125</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>125</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="minimum">
+       <number>1</number>
+      </property>
+      <property name="maximum">
+       <number>100000</number>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="2">
+     <spacer name="horizontalSpacer_16">
+      <property name="orientation">
+       <enum>Qt::Horizontal</enum>
+      </property>
+      <property name="sizeHint" stdset="0">
+       <size>
+        <width>40</width>
+        <height>20</height>
+       </size>
+      </property>
+     </spacer>
+    </item>
+    <item row="0" column="0">
+     <widget class="QLabel" name="labelTransceiver">
+      <property name="minimumSize">
+       <size>
+        <width>200</width>
+        <height>0</height>
+       </size>
+      </property>
+      <property name="text">
+       <string>Transceiver Samples:</string>
+      </property>
+     </widget>
+    </item>
+   </layout>
+  </widget>
+  <widget class="QFrame" name="frame_15">
+   <property name="geometry">
+    <rect>
+     <x>10</x>
+     <y>150</y>
+     <width>841</width>
+     <height>201</height>
+    </rect>
+   </property>
+   <property name="frameShape">
+    <enum>QFrame::StyledPanel</enum>
+   </property>
+   <property name="frameShadow">
+    <enum>QFrame::Sunken</enum>
+   </property>
+   <layout class="QGridLayout" name="gridLayout_6">
+    <item row="2" column="3">
+     <widget class="QLabel" name="labelDBITF">
+      <property name="minimumSize">
+       <size>
+        <width>200</width>
+        <height>0</height>
+       </size>
+      </property>
+      <property name="text">
+       <string>DBIT Clock Frequency (MHz):</string>
+      </property>
+     </widget>
+    </item>
+    <item row="2" column="0">
+     <widget class="QLabel" name="labelADCF">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Minimum" vsizetype="Preferred">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>200</width>
+        <height>0</height>
+       </size>
+      </property>
+      <property name="text">
+       <string>ADC Clock Frequency (MHz):</string>
+      </property>
+     </widget>
+    </item>
+    <item row="3" column="4">
+     <widget class="QSpinBox" name="spinBoxDBITPhase">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="maximum">
+       <number>9999</number>
+      </property>
+     </widget>
+    </item>
+    <item row="4" column="3">
+     <widget class="QLabel" name="labelDBITPipeline">
+      <property name="text">
+       <string>DBIT Pipeline:</string>
+      </property>
+     </widget>
+    </item>
+    <item row="2" column="1">
+     <widget class="QSpinBox" name="spinBoxADCF">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="maximum">
+       <number>1000</number>
+      </property>
+     </widget>
+    </item>
+    <item row="4" column="1">
+     <widget class="QSpinBox" name="spinBoxADCPipeline">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+     </widget>
+    </item>
+    <item row="4" column="0">
+     <widget class="QLabel" name="labelADCPipeline">
+      <property name="text">
+       <string>ADC Pipeline:</string>
+      </property>
+     </widget>
+    </item>
+    <item row="3" column="0">
+     <widget class="QLabel" name="labelADCPhase">
+      <property name="text">
+       <string>ADC Clock Phase (a.u.):</string>
+      </property>
+     </widget>
+    </item>
+    <item row="3" column="3">
+     <widget class="QLabel" name="labelDBITPhase">
+      <property name="text">
+       <string>DBIT Clock Phase (a.u.):</string>
+      </property>
+     </widget>
+    </item>
+    <item row="2" column="2">
+     <spacer name="horizontalSpacer">
+      <property name="orientation">
+       <enum>Qt::Horizontal</enum>
+      </property>
+      <property name="sizeType">
+       <enum>QSizePolicy::Expanding</enum>
+      </property>
+      <property name="sizeHint" stdset="0">
+       <size>
+        <width>10</width>
+        <height>20</height>
+       </size>
+      </property>
+     </spacer>
+    </item>
+    <item row="2" column="4">
+     <widget class="QSpinBox" name="spinBoxDBITF">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="maximum">
+       <number>1000</number>
+      </property>
+     </widget>
+    </item>
+    <item row="4" column="4">
+     <widget class="QSpinBox" name="spinBoxDBITPipeline">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+     </widget>
+    </item>
+    <item row="3" column="1">
+     <widget class="QSpinBox" name="spinBoxADCPhase">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>125</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="maximum">
+       <number>9999</number>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="0">
+     <widget class="QLabel" name="labelAnalog">
+      <property name="text">
+       <string>Analog Samples:</string>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="1">
+     <widget class="QSpinBox" name="spinBoxAnalog">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>125</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>125</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="minimum">
+       <number>1</number>
+      </property>
+      <property name="maximum">
+       <number>100000</number>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="3">
+     <widget class="QLabel" name="labelDigital">
+      <property name="text">
+       <string>Digital Samples:</string>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="4">
+     <widget class="QSpinBox" name="spinBoxDigital">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Preferred" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>125</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>125</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="minimum">
+       <number>1</number>
+      </property>
+      <property name="maximum">
+       <number>100000</number>
+      </property>
+      <property name="value">
+       <number>1</number>
+      </property>
+     </widget>
+    </item>
+   </layout>
+  </widget>
+  <widget class="QFrame" name="frame_11">
+   <property name="geometry">
+    <rect>
+     <x>10</x>
+     <y>370</y>
+     <width>841</width>
+     <height>181</height>
+    </rect>
+   </property>
+   <property name="frameShape">
+    <enum>QFrame::StyledPanel</enum>
+   </property>
+   <property name="frameShadow">
+    <enum>QFrame::Sunken</enum>
+   </property>
+   <layout class="QGridLayout" name="gridLayout_15">
+    <item row="0" column="0" colspan="2">
+     <widget class="QLabel" name="label_127">
+      <property name="font">
+       <font>
+        <pointsize>11</pointsize>
+       </font>
+      </property>
+      <property name="frameShadow">
+       <enum>QFrame::Sunken</enum>
+      </property>
+      <property name="lineWidth">
+       <number>1</number>
+      </property>
+      <property name="text">
+       <string>Output Settings</string>
+      </property>
+     </widget>
+    </item>
+    <item row="2" column="0">
+     <widget class="QLabel" name="label_129">
+      <property name="text">
+       <string>File name:</string>
+      </property>
+     </widget>
+    </item>
+    <item row="2" column="1">
+     <widget class="QLineEdit" name="lineEditFileName">
+      <property name="minimumSize">
+       <size>
+        <width>0</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>16777215</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="styleSheet">
+       <string notr="true">background-color: rgb(200, 219, 230);</string>
+      </property>
+      <property name="placeholderText">
+       <string>File Name</string>
+      </property>
+     </widget>
+    </item>
+    <item row="4" column="0">
+     <widget class="QLabel" name="label_131">
+      <property name="text">
+       <string>Index:</string>
+      </property>
+     </widget>
+    </item>
+    <item row="4" column="1">
+     <widget class="QSpinBox" name="spinBoxAcquisitionIndex">
+      <property name="minimumSize">
+       <size>
+        <width>0</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>200</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="maximum">
+       <number>999999999</number>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="4">
+     <widget class="QCheckBox" name="checkBoxFileWriteRaw">
+      <property name="text">
+       <string>Raw</string>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="4">
+     <widget class="QPushButton" name="pushButtonFilePath">
+      <property name="minimumSize">
+       <size>
+        <width>0</width>
+        <height>36</height>
+       </size>
+      </property>
+      <property name="styleSheet">
+       <string notr="true">background-color: rgb(199, 213, 207);</string>
+      </property>
+      <property name="text">
+       <string>Browse</string>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="1">
+     <widget class="QLineEdit" name="lineEditFilePath">
+      <property name="minimumSize">
+       <size>
+        <width>0</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>16777215</width>
+        <height>31</height>
+       </size>
+      </property>
+      <property name="styleSheet">
+       <string notr="true">background-color: rgb(200, 219, 230);</string>
+      </property>
+      <property name="placeholderText">
+       <string>File Path</string>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="0">
+     <widget class="QLabel" name="label_130">
+      <property name="text">
+       <string>File path:</string>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="3">
+     <widget class="QCheckBox" name="checkBoxFileWriteNumpy">
+      <property name="text">
+       <string>Numpy</string>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="2">
+     <widget class="QLabel" name="label_2">
+      <property name="text">
+       <string>Save format:</string>
+      </property>
+     </widget>
+    </item>
+   </layout>
+  </widget>
+  <widget class="QFrame" name="frame_53">
+   <property name="geometry">
+    <rect>
+     <x>10</x>
+     <y>570</y>
+     <width>841</width>
+     <height>141</height>
+    </rect>
+   </property>
+   <property name="sizePolicy">
+    <sizepolicy hsizetype="Fixed" vsizetype="Preferred">
+     <horstretch>0</horstretch>
+     <verstretch>0</verstretch>
+    </sizepolicy>
+   </property>
+   <property name="frameShape">
+    <enum>QFrame::StyledPanel</enum>
+   </property>
+   <property name="frameShadow">
+    <enum>QFrame::Sunken</enum>
+   </property>
+   <layout class="QGridLayout" name="gridLayout_3">
+    <item row="0" column="0">
+     <widget class="QLabel" name="label">
+      <property name="text">
+       <string>Number of frames:</string>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="1">
+     <widget class="QSpinBox" name="spinBoxFrames">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>120</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>16777215</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="minimum">
+       <number>1</number>
+      </property>
+      <property name="maximum">
+       <number>999999999</number>
+      </property>
+      <property name="value">
+       <number>999999999</number>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="2">
+     <spacer name="horizontalSpacer_4">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Minimum" vsizetype="Minimum">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="orientation">
+       <enum>Qt::Horizontal</enum>
+      </property>
+      <property name="sizeHint" stdset="0">
+       <size>
+        <width>40</width>
+        <height>20</height>
+       </size>
+      </property>
+     </spacer>
+    </item>
+    <item row="0" column="3">
+     <widget class="QLabel" name="label_392">
+      <property name="text">
+       <string>Period (s):</string>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="4">
+     <widget class="QDoubleSpinBox" name="spinBoxPeriod">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>120</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>150</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="decimals">
+       <number>4</number>
+      </property>
+      <property name="maximum">
+       <double>99999.990000000005239</double>
+      </property>
+     </widget>
+    </item>
+    <item row="0" column="5">
+     <widget class="QComboBox" name="comboBoxPeriod">
+      <property name="minimumSize">
+       <size>
+        <width>0</width>
+        <height>31</height>
+       </size>
+      </property>
+      <item>
+       <property name="text">
+        <string>s</string>
+       </property>
+      </item>
+      <item>
+       <property name="text">
+        <string>ms</string>
+       </property>
+      </item>
+      <item>
+       <property name="text">
+        <string>μs</string>
+       </property>
+      </item>
+      <item>
+       <property name="text">
+        <string>ns</string>
+       </property>
+      </item>
+     </widget>
+    </item>
+    <item row="1" column="0">
+     <widget class="QLabel" name="label_393">
+      <property name="minimumSize">
+       <size>
+        <width>0</width>
+        <height>0</height>
+       </size>
+      </property>
+      <property name="text">
+       <string>Number of triggers:</string>
+      </property>
+     </widget>
+    </item>
+    <item row="1" column="1">
+     <widget class="QSpinBox" name="spinBoxTriggers">
+      <property name="sizePolicy">
+       <sizepolicy hsizetype="Fixed" vsizetype="Fixed">
+        <horstretch>0</horstretch>
+        <verstretch>0</verstretch>
+       </sizepolicy>
+      </property>
+      <property name="minimumSize">
+       <size>
+        <width>120</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>16777215</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="minimum">
+       <number>1</number>
+      </property>
+      <property name="maximum">
+       <number>999999999</number>
+      </property>
+     </widget>
+    </item>
+    <item row="2" column="0">
+     <widget class="QLabel" name="label_132">
+      <property name="text">
+       <string>Number of measurements:</string>
+      </property>
+     </widget>
+    </item>
+    <item row="2" column="1">
+     <widget class="QSpinBox" name="spinBoxMeasurements">
+      <property name="minimumSize">
+       <size>
+        <width>120</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="maximumSize">
+       <size>
+        <width>16777215</width>
+        <height>32</height>
+       </size>
+      </property>
+      <property name="alignment">
+       <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
+      </property>
+      <property name="minimum">
+       <number>1</number>
+      </property>
+      <property name="maximum">
+       <number>999999999</number>
+      </property>
+     </widget>
+    </item>
+   </layout>
+  </widget>
+ </widget>
+ <resources/>
+ <connections/>
+</ui>