removed tests for eiger

changed format to clang-format 17

.gitea/workflows/rh8-native.yml

@@ -0,0 +1,29 @@
+name: Build on RHEL8
+
+on:
+  push:
+  workflow_dispatch:
+
+permissions:
+  contents: read
+
+jobs:
+  build:
+    runs-on: "ubuntu-latest"
+    container:
+      image: gitea.psi.ch/detectors/rhel8-detectors-dev
+    steps:
+      - name: Clone repository
+        run: |
+          echo Cloning ${{ github.ref_name }}
+          git clone https://${{secrets.GITHUB_TOKEN}}@gitea.psi.ch/${{ github.repository }}.git --branch=${{ github.ref_name }} .
+
+      - name: Build library 
+        run: |
+            mkdir build && cd build
+            cmake .. -DSLS_USE_PYTHON=ON -DSLS_USE_TESTS=ON 
+            make -j 2 
+
+      - name: C++ unit tests
+        working-directory: ${{gitea.workspace}}/build
+        run: ctest

.gitea/workflows/rh9-native.yml

@@ -0,0 +1,27 @@
+name: Build on RHEL9
+
+on:
+  push:
+  workflow_dispatch:
+
+permissions:
+  contents: read
+
+jobs:
+  build:
+    runs-on: "ubuntu-latest"
+    container:
+      image: gitea.psi.ch/detectors/rhel9-detectors-dev
+    steps:
+      - uses: actions/checkout@v4
+
+
+      - name: Build library 
+        run: |
+            mkdir build && cd build
+            cmake .. -DSLS_USE_PYTHON=ON -DSLS_USE_TESTS=ON
+            make -j 2 
+
+      - name: C++ unit tests
+        working-directory: ${{gitea.workspace}}/build
+        run: ctest

.github/workflows/build_wheel.yml

@@ -0,0 +1,64 @@
+name: Build wheel
+
+on:
+    workflow_dispatch:
+    pull_request:
+    push:
+      branches:
+        - main
+    release:
+      types:
+        - published
+  
+
+jobs:
+  build_wheels:
+    name: Build wheels on ${{ matrix.os }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ubuntu-latest,]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Build wheels
+        run: pipx run cibuildwheel==2.23.0
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-wheels-${{ matrix.os }}-${{ strategy.job-index }}
+          path: ./wheelhouse/*.whl
+    
+  build_sdist:
+    name: Build source distribution
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v4
+
+    - name: Build sdist
+      run: pipx run build --sdist
+
+    - uses: actions/upload-artifact@v4
+      with:
+        name: cibw-sdist
+        path: dist/*.tar.gz
+
+  upload_pypi:
+    needs: [build_wheels, build_sdist]
+    runs-on: ubuntu-latest
+    environment: pypi
+    permissions:
+        id-token: write
+    if: github.event_name == 'release' && github.event.action == 'published'
+    # or, alternatively, upload to PyPI on every tag starting with 'v' (remove on: release above to use this)
+    # if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags/v')
+    steps:
+        - uses: actions/download-artifact@v4
+          with:
+            # unpacks all CIBW artifacts into dist/
+            pattern: cibw-*
+            path: dist
+            merge-multiple: true
+
+        - uses: pypa/gh-action-pypi-publish@release/v1

.github/workflows/cmake.yaml

@@ -1,4 +1,4 @@
-name: CMake
+name: Native CMake Build
 
 on: [push, pull_request]
 
@@ -14,10 +14,16 @@ jobs:
     runs-on: ubuntu-latest
     name: Configure and build using cmake
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: 3.12
+          cache: 'pip'
+      - run: pip install pytest numpy colorama
+
       - uses: awalsh128/cache-apt-pkgs-action@latest
         with:
-          packages: libzmq3-dev libhdf5-dev qtbase5-dev qt5-qmake libqt5svg5-dev
+          packages: libhdf5-dev qtbase5-dev qt5-qmake libqt5svg5-dev libpng-dev libtiff-dev
           version: 1.0
 
       - name: Configure CMake
@@ -27,12 +33,15 @@ jobs:
 
       - name: Build
         # Build your program with the given configuration
-        run: cmake --build ${{github.workspace}}/build -j2 --config ${{env.BUILD_TYPE}}
+        run: cmake --build ${{github.workspace}}/build -j4 --config ${{env.BUILD_TYPE}}
 
-      - name: Test
+      - name: C++ unit tests
         working-directory: ${{github.workspace}}/build
-        # Execute tests defined by the CMake configuration.
-        # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail
         run: ctest -C ${{env.BUILD_TYPE}} -j1
 
+      - name: Python unit tests
+        working-directory: ${{github.workspace}}/build/bin
+        run: |
+          python -m pytest ${{github.workspace}}/python/tests
+
 

.github/workflows/conda_library.yaml

@@ -0,0 +1,42 @@
+name: Build slsdetlib
+
+on: [pull_request]
+
+jobs:
+  build:
+    strategy:
+      fail-fast: false
+      matrix:
+        platform: [ubuntu-latest, ] # macos-12, windows-2019]
+        python-version: ["3.12",]
+
+    runs-on: ${{ matrix.platform }}
+
+    # The setup-miniconda action needs this to activate miniconda
+    defaults:
+      run:
+        shell: "bash -l {0}"
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Get conda
+        uses: conda-incubator/setup-miniconda@v3.0.4
+        with:
+          python-version: ${{ matrix.python-version }}
+          channels: conda-forge
+
+      - name: Prepare
+        run: conda install conda-build conda-verify pytest anaconda-client
+
+      - name: Disable upload
+        run: conda config --set anaconda_upload no
+
+      - name: Build
+        run: conda build conda-recipes/main-library --output-folder build_output
+
+      - name: Upload all Conda packages
+        uses: actions/upload-artifact@v4
+        with:
+          name: conda-packages
+          path: build_output/**  # Uploads all packages

.github/workflows/conda_python.yaml

@@ -0,0 +1,42 @@
+name: slsdet
+
+on: [pull_request]
+
+jobs:
+  build:
+    strategy:
+      fail-fast: false
+      matrix:
+        platform: [ubuntu-latest, ] # macos-12, windows-2019]
+        python-version: ["3.12",]
+
+    runs-on: ${{ matrix.platform }}
+
+    # The setup-miniconda action needs this to activate miniconda
+    defaults:
+      run:
+        shell: "bash -l {0}"
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Get conda
+        uses: conda-incubator/setup-miniconda@v3.0.4
+        with:
+          python-version: ${{ matrix.python-version }}
+          channels: conda-forge
+
+      - name: Prepare
+        run: conda install conda-build conda-verify pytest anaconda-client
+
+      - name: Disable upload
+        run: conda config --set anaconda_upload no
+
+      - name: Build
+        run: conda build conda-recipes/python-client --output-folder build_output 
+
+      - name: Upload all Conda packages
+        uses: actions/upload-artifact@v4
+        with:
+          name: conda-packages
+          path: build_output/**  # Uploads all packages

CMakeLists.txt

@@ -1,8 +1,16 @@
 # SPDX-License-Identifier: LGPL-3.0-or-other
 # Copyright (C) 2021 Contributors to the SLS Detector Package
-cmake_minimum_required(VERSION 3.14)
+cmake_minimum_required(VERSION 3.15)
 project(slsDetectorPackage)
-set(PROJECT_VERSION 8.0.2)
+
+# Read VERSION file into project version
+set(VERSION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/VERSION")
+file(READ "${VERSION_FILE}" VERSION_CONTENT)
+string(STRIP "${VERSION_CONTENT}" PROJECT_VERSION_STRING)
+set(PROJECT_VERSION ${PROJECT_VERSION_STRING})
+
+# Pass it to the compiler
+add_compile_definitions(SLS_DET_VERSION="${PROJECT_VERSION}")
 
 set(CMAKE_CXX_FLAGS_RELEASE "-O3 -DNDEBUG")
 
@@ -13,6 +21,7 @@ if (${CMAKE_VERSION} VERSION_GREATER "3.24")
 endif()
 include(cmake/project_version.cmake)
 include(cmake/SlsAddFlag.cmake)
+include(cmake/helpers.cmake)
 
 
 
@@ -21,20 +30,44 @@ include(FetchContent)
 option(SLS_FETCH_ZMQ_FROM_GITHUB "Fetch zmq from github" OFF)
 option(SLS_FETCH_PYBIND11_FROM_GITHUB "Fetch pybind11 from github" OFF)
 
+
+
+# Allow FetchContent_Populate to be called with a single argument
+# otherwise deprecated warning is issued
+# Note: From cmake 3.28 we can pass EXCLUDE_FROM_ALL to FetchContent_Declare
+# and avoid direct use of Populate
+if (${CMAKE_VERSION} VERSION_GREATER_EQUAL "3.30")
+    cmake_policy(SET CMP0169 OLD) 
+endif()
+
+# Patch libzmq to set minimum cmake version to 3.15 to avoid warnings
+# with newer cmake versions
+# Patch is applied in the FetchContent_Declare
+set(SLS_LIBZMQ_VERSION "4.3.4")
+
+find_program(PATCH_EXECUTABLE patch)
+if(NOT PATCH_EXECUTABLE)
+    message(FATAL_ERROR "The 'patch' tool is required for patching lib zeromq. Please install it.")
+endif()
+
 if(SLS_FETCH_ZMQ_FROM_GITHUB)
     # Opt in to pull down a zmq version from github instead of
-    # using the bundled verison
+    # using the bundled version
     FetchContent_Declare(
         libzmq
         GIT_REPOSITORY https://github.com/zeromq/libzmq.git
-        GIT_TAG        v4.3.4
+        GIT_TAG        v${SLS_LIBZMQ_VERSION}
+        PATCH_COMMAND ${CMAKE_COMMAND} -E chdir <SOURCE_DIR> patch -p1 < ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq_cmake_version.patch
+        UPDATE_DISCONNECTED 1
     )
 else()
     # Standard behaviour use libzmq included in this repo (libs/libzmq)
     FetchContent_Declare(
         libzmq
-        URL ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq-4.3.4.tar.gz
+        URL ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq-${SLS_LIBZMQ_VERSION}.tar.gz
         URL_HASH MD5=cc20b769ac10afa352e5ed2769bb23b3
+        PATCH_COMMAND ${CMAKE_COMMAND} -E chdir <SOURCE_DIR> patch -p1 < ${CMAKE_CURRENT_SOURCE_DIR}/libs/libzmq/libzmq_cmake_version.patch
+        UPDATE_DISCONNECTED 1
     )
 endif()
 
@@ -46,6 +79,11 @@ set(ENABLE_CPACK OFF CACHE BOOL "")
 set(ENABLE_CLANG OFF CACHE BOOL "")
 set(ENABLE_CURVE OFF CACHE BOOL "")
 set(ENABLE_DRAFTS OFF CACHE BOOL "")
+set(ENABLE_PRECOMPILED OFF CACHE BOOL "")
+set(WITH_DOC OFF CACHE BOOL "")
+set(WITH_DOCS OFF CACHE BOOL "")
+
+ 
 
 # Using GetProperties and Populate to be able to exclude zmq
 # from install (not possible with FetchContent_MakeAvailable(libzmq))
@@ -148,7 +186,6 @@ set(SLS_INTERNAL_QWT_DIR ${CMAKE_CURRENT_SOURCE_DIR}/libs/qwt-6.1.5)
 set(ClangFormat_EXCLUDE_PATTERNS    "build/" 
                                     "libs/" 
                                     "slsDetectorCalibration/" 
-                                    "ctbGui/" 
                                     "manual/"
                                     "python/"
                                     "sample/"
@@ -157,11 +194,9 @@ find_package(ClangFormat)
 
 set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
 
-if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
-  message(STATUS "No build type selected, default to Release")
-  set(CMAKE_BUILD_TYPE "Release" CACHE STRING "Build type (default Release)" FORCE)
-endif()
-
+default_build_type("Release")
+set_std_fs_lib()
+message(STATUS "Extra linking to fs lib:${STD_FS_LIB}")
 
 #Enable LTO if available
 include(CheckIPOSupported)
@@ -184,7 +219,7 @@ endif()
 # to control options for the libraries
 if(NOT TARGET slsProjectOptions)
     add_library(slsProjectOptions INTERFACE)
-    target_compile_features(slsProjectOptions INTERFACE cxx_std_11)
+   target_compile_features(slsProjectOptions INTERFACE cxx_std_17)
 endif()
 
 if (NOT TARGET slsProjectWarnings)
@@ -232,6 +267,8 @@ if (NOT TARGET slsProjectCSettings)
                                                 -Wredundant-decls
                                                 -Wdouble-promotion
                                                 -Werror=return-type
+                                                -Wno-format-overflow 
+                                                -Wno-format-truncation
                                     )
     sls_disable_c_warning("-Wstringop-truncation")
 endif()
@@ -240,10 +277,11 @@ endif()
 if(SLS_USE_SANITIZER)
     target_compile_options(slsProjectOptions INTERFACE -fsanitize=address,undefined -fno-omit-frame-pointer)
     target_link_libraries(slsProjectOptions INTERFACE -fsanitize=address,undefined)
-    # target_compile_options(slsProjectOptions INTERFACE -fsanitize=thread)
-    # target_link_libraries(slsProjectOptions INTERFACE -fsanitize=thread)
+    #target_compile_options(slsProjectOptions INTERFACE -fsanitize=thread -fno-omit-frame-pointer)
+    #target_link_libraries(slsProjectOptions INTERFACE -fsanitize=thread)
 endif()
 
+
 if(SLS_TUNE_LOCAL)
     target_compile_options(slsProjectOptions INTERFACE -mtune=native -march=native)
 endif()
@@ -294,19 +332,21 @@ if (SLS_USE_INTEGRATION_TESTS)
 endif (SLS_USE_INTEGRATION_TESTS)
 
 if (SLS_USE_PYTHON)
-    find_package (Python 3.6 COMPONENTS Interpreter Development)
+    find_package (Python 3.8 COMPONENTS Interpreter Development.Module REQUIRED)
+    set(PYBIND11_FINDPYTHON ON) # Needed for RH8
     if(SLS_FETCH_PYBIND11_FROM_GITHUB)
         FetchContent_Declare(
             pybind11
             GIT_REPOSITORY https://github.com/pybind/pybind11
-            GIT_TAG        v2.11.0
+            GIT_TAG        v2.13.6
         )
 
     else()
+    # https://github.com/pybind/pybind11/releases
         FetchContent_Declare(
             pybind11
-            URL ${CMAKE_SOURCE_DIR}/libs/pybind11/v2.11.0.tar.gz
-            URL_HASH MD5=90c4946e87c64d8d8fc0ae4edf35d780
+            URL ${CMAKE_CURRENT_SOURCE_DIR}/libs/pybind11/v2.13.6.tar.gz
+            URL_HASH MD5=a04dead9c83edae6d84e2e343da7feeb
         )
     endif()
     FetchContent_MakeAvailable(pybind11)
@@ -315,12 +355,18 @@ if (SLS_USE_PYTHON)
 endif(SLS_USE_PYTHON)
 
 if (SLS_USE_CTBGUI)
-    add_subdirectory(ctbGui)
+    add_subdirectory(pyctbgui)
 endif(SLS_USE_CTBGUI)
 
-configure_file( .clang-tidy  
-    ${CMAKE_BINARY_DIR}/.clang-tidy  
-)
+# Workaround for file note being copied to build directory
+# when issuing a python -m build
+# TODO! Proper fix
+if(EXISTS ".clang-tidy")
+    configure_file(.clang-tidy  
+        ${CMAKE_BINARY_DIR}/.clang-tidy  
+    )
+endif()
+
 
 if (SLS_BUILD_EXAMPLES)
     add_subdirectory(sample)
@@ -344,4 +390,4 @@ if(SLS_MASTER_PROJECT)
     set(CMAKE_INSTALL_DIR "share/cmake/${PROJECT_NAME}")
     set(PROJECT_LIBRARIES slsSupportShared slsDetectorShared slsReceiverShared)
     include(cmake/package_config.cmake)
-endif()
+endif()

README.md

@@ -1,20 +1,33 @@
 ## Dependencies
-Before building from source make sure that you have the [software wiki](https://slsdetectorgroup.github.io/devdoc/dependencies.html) installed. If installing using conda, conda will manage the dependencies. Avoid also installing packages with pip. 
+Before building from source make sure that you have the [dependencies](https://slsdetectorgroup.github.io/devdoc/dependencies.html) installed. If installing using conda, conda will manage the dependencies. Avoid also installing dependency packages with pip. 
 
 ## Documentaion
-Detailed documentation can be found in the [software wiki](https://slsdetectorgroup.github.io/devdoc/index.html) and on the [official site](https://www.psi.ch/en/detectors/software).
+Detailed documentation including installation can be found in the [software wiki](https://slsdetectorgroup.github.io/devdoc/index.html).
+
+List of releases can be found on the [official site](https://www.psi.ch/en/lxn/software-releases).
+
+Firmware compatiblity can be found in [firmware page](https://github.com/slsdetectorgroup/slsDetectorFirmware)
 
 ## Installation
 
-### 1. Install binaries using conda
+The slsDetectorPackage provides core detector software implemented in C++, along with Python bindings packaged as the slsdet Python extension module. Choose the option that best fits your environment and use case.
+
+1. **Install pre-built binaries using conda (Recommended)**: Install pre-built binaries for the C++ client, receiver, GUI and the Python API (`slsdet`), simplifying setup across platforms.
+
+2. **Pip**: Install only the Python extension module, either by downloading the pre-built library from PyPI or by building the extension locally from source. Available only from v9.2.0 onwards.
+
+3. **Build from source**: Compile the entire package yourself, including both the C++ core and the Python bindings, for maximum control and customization. However, make sure that you have the dependencies installed. If installing using conda, conda will manage the dependencies. Avoid installing packages with pip and conda simultaneously.
+
+### 1. Install pre-built binaries using conda (Recommended)
 Conda is not only useful to manage python environments but can also
 be used as a user space package manager. Dates in the tag (for eg. 2020.07.23.dev0) 
 are from the developer branch. Please use released tags for stability.
 
 We have three different packages available:
-* **slsdetlib** shared libraries and command line utilities 
+* **slsdetlib** Shared libraries and command line utilities 
 * **slsdetgui** GUI
 * **slsdet** Python bindings
+* **moenchzmq** Moench
 
 ```
 #Add channels for dependencies and our library
@@ -40,35 +53,38 @@ conda search slsdetlib
 conda search slsdet
 # gui
 conda search slsdetgui
+# moench
+conda search moenchzmq
 ```
 
-### 2. Build from source
+## 2. Pip
+The Python extension module `slsdet` can be installed using pip. This is available from v9.2.0 onwards.
 
-##### 2.1 Download Source Code from github
+```
+#Install the Python extension module from PyPI
+pip install slsdet
+
+# or install the python extension locally from source
+git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch 9.2.0
+cd slsDetectorPackage
+pip install .
+```
+
+## 3. Build from source
+
+### 3.1. Download Source Code from github
 ```
 git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch 7.0.0
 ```
 
-**Pybind for Python**<br>
-* **v7.0.0+**:
-pybind11 packaged into 'libs/pybind'. No longer a submodule. No need for "recursive" or "submodule update".
- 
-* **Older versions**:
-   pybind11 is a submodule. Must be cloned using "recursive" and updated when switching between versions using the following commands.
-
-```
-# clone using recursive to get pybind11 submodule
-git clone --recursive https://github.com/slsdetectorgroup/slsDetectorPackage.git
-
-# update submodule when switching between releases
-cd slsDetectorPackage
-git submodule update --init
-```
-
-##### 2.2 Build from source
+> **Note:** For v6.x.x of slsDetectorPackage and older, refer [pybind11 notes on cloning](#Pybind-and-Zeromq).
 
 
-###### Build using CMake
+### 3.2. Build from source
+
+One can either build using cmake or use the in-built cmk.sh script.
+
+### 3.2.1. Build using CMake
 
 ```
 # outside slsDetecorPackage folder
@@ -94,26 +110,28 @@ Instead of the cmake command, one can use ccmake to get a list of options to con
 ccmake ..
  
 # choose the options
-# first press [c] - configure
+# first press [c] - configure (unil you see [g])
 # then press [g] - generate
 ```
 
 |Example cmake options|Comment|
 |---|---|
 | -DSLS_USE_PYTHON=ON            | Python                                 |   
-| -DPython_FIND_VIRTUALENV=ONLY  | Python from only the conda environment |
-| -DZeroMQ_HINT=/usr/lib64       | Use system zmq instead                 |    
+| -DPython_FIND_VIRTUALENV=ONLY  | Python from only the conda env         | 
 | -DSLS_USE_GUI=ON               | GUI                                    |
+| -DSLS_USE_HDF5=ON              | HDF5                                   |
+| -DSLS_USE_SIMULATOR=ON         | Simulator                              |
 
+> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for cmake option to hint library location](#Pybind-and-Zeromq).
 
-###### Build using in-built cmk.sh script
+### 3.2.2. Build using in-built cmk.sh script
 
 ```
 The binaries are generated in slsDetectorPackage/build/bin directory.
 
-Usage: ./cmk.sh [-b] [-c] [-d <HDF5 directory>] [e] [g] [-h] [i] [-j <Number of threads>] 
-[-k <CMake command>] [-l <Install directory>] [m] [n] [-p] [-q <Zmq hint directory>] 
-[r] [s] [t] [u] [z]  
+Usage: $0 [-b] [-c] [-d <HDF5 directory>] [-e] [-g] [-h] [-i]
+[-j <Number of threads>] [-k <CMake command>] [-l <Install directory>]
+[-m] [-n] [-p] [-r] [-s] [-t] [-u] [-z]
 -[no option]: only make
 -b: Builds/Rebuilds CMake files normal mode
 -c: Clean
@@ -128,14 +146,13 @@ Usage: ./cmk.sh [-b] [-c] [-d <HDF5 directory>] [e] [g] [-h] [i] [-j <Number of
 -m: Manuals
 -n: Manuals without compiling doxygen (only rst)
 -p: Builds/Rebuilds Python API
--q: Zmq hint directory
 -r: Build/Rebuilds only receiver
 -s: Simulator
 -t: Build/Rebuilds only text client
 -u: Chip Test Gui
 -z: Moench zmq processor
 
-    
+
 # display all options
 ./cmk.sh -?
 
@@ -145,13 +162,16 @@ Usage: ./cmk.sh [-b] [-c] [-d <HDF5 directory>] [e] [g] [-h] [i] [-j <Number of
 # new build, python and compile in parallel:
 ./cmk.sh -cbpj5
 
-#To use the system zmq (/usr/lib64) instead
-./cmk.sh -cbj5 -q /usr/lib64
+#For rebuilding only certain sections
+./cmk.sh -tg #only text client and gui
+./cmk.sh -r #only receiver
 ```
 
-###### Build on old distributions
+> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for cmk script option to hint library location](#Pybind-and-Zeromq).
 
-If your linux distribution doesn't come with a C++11 compiler (gcc>4.8) then 
+### 3.3. Build on old distributions using conda
+
+If your linux distribution doesn't come with a C++17 compiler (gcc>8) then 
 it's possible to install a newer gcc using conda and build the slsDetectorPackage
 using this compiler
 
@@ -166,7 +186,10 @@ cmake ../slsDetectorPackage -DCMAKE_PREFIX_PATH=$CONDA_PREFIX
 make -j12
 ```
 
-###### Build slsDetectorGui (Qt5)
+> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for dependencies for conda](#Pybind-and-Zeromq).
+
+
+### 3.4. Build slsDetectorGui (Qt5)
 
 1. Using pre-built binary on conda
 ```
@@ -180,7 +203,14 @@ yum install qt5-qtbase-devel.x86_64
 yum install qt5-qtsvg-devel.x86_64 
 ```
 
-3. Using conda
+3. Using system installation on RHEL8
+```
+yum install qt5-qtbase-devel.x86_64
+yum install qt5-qtsvg-devel.x86_64 
+yum install expat-devel.x86_64
+```
+
+4. Using conda
 ```
 #Add channels for dependencies and our library
 conda config --add channels conda-forge
@@ -208,13 +238,15 @@ cd slsDetectorPackage
 ./cmk.sh -cbgj9
 ```
 
-###### Build documentation from package
+> **Note:** For v7.x.x of slsDetectorPackage and older, refer [zeromq notes for dependencies for conda](#Pybind-and-Zeromq).
+
+### 3.5. Build documentation from package
 The documentation for the slsDetectorPackage is build using a combination 
 of Doxygen, Sphinx and Breathe. The easiest way to install the dependencies
 is to use conda 
 
 ```
-conda create -n myenv python sphinx_rtd_theme breathe
+conda create -n myenv python=3.12 sphinx sphinx_rtd_theme breathe doxygen numpy
 ```
 
 ```
@@ -228,6 +260,48 @@ make rst # rst only, saves time in case the API did not change
 ```
 
 
+
+## 4. Pybind and Zeromq
+
+### Pybind11 for Python
+**v8.0.0+**:
+pybind11 is built
+* by default from tar file in repo (libs/pybind/v2.1x.0.tar.gz)
+* or use advanced option SLS_FETCH_PYBIND11_FROM_GITHUB [link].
+   * v9.0.0+: pybind11 (v2.13.6)
+   * v8.x.x : pybind11 (v2.11.0)
+
+**v7.x.x**:
+pybind11 packaged into ‘libs/pybind’. No longer a submodule. No need for “recursive” or “submodule update”.
+
+**Older versions**:
+pybind11 is a submodule. Must be cloned using “recursive” and updated when switching between versions using the following commands.
+
+```
+# Note: Only for v6.x.x versions and older
+
+# clone using recursive to get pybind11 submodule
+git clone --recursive https://github.com/slsdetectorgroup/slsDetectorPackage.git
+
+# update submodule when switching between releases
+cd slsDetectorPackage
+git submodule update --init
+```
+
+### Zeromq
+**v8.0.0+**:
+zeromq (v4.3.4) is built
+* by default from tar file in repo (libs/libzmq/libzmq-4.3.4.tar.gz)
+* or use advanced option SLS_FETCH_ZMQ_FROM_GITHUB [link].
+
+**v7.x.x and older**:
+zeromq-devel must be installed and one can hint its location using
+* cmake option:’-DZeroMQ_HINT=/usr/lib64’ or
+* option ‘-q’ in cmk.sh script: : ./cmk.sh -cbj5 -q /usr/lib64
+* ‘zeromq’ dependency added when installing using conda
+
+
 ## Support
     dhanya.thattil@psi.ch
     erik.frojdh@psi.ch
+    alice.mazzoleni@psi.ch

RELEASE.md

@@ -0,0 +1,245 @@
+SLS Detector Package Minor Release 10.0.1 released on ?
+================================================================
+
+This document describes the differences between v10.0.1 and v10.0.0   
+
+
+
+    CONTENTS
+    --------
+    1           Changes
+    1.1         Compilation Changes
+    1.2         New or Changed Features
+        1.2.1   Breaking API
+        1.2.2   Resolved or Changed Features
+        1.2.3   New Features
+    3           On-board Detector Server Compatibility
+    4           Firmware Requirements
+    5           Kernel Requirements
+    6           Download, Documentation & Support
+
+
+
+1 Changes
+==========
+
+
+1.1 Compilation Changes
+========================
+
+
+1.2 New or Changed Features
+============================
+
+    Python
+    -------
+
+    * receiver ROI can be set from Python using command ``rx_roi``(it supports any sequence of four or two (for mythen3 and gotthard) ints e.g. a tuple (xmin, xmax, ymin, ymax) or a sequence of such for multiple ROIS)
+    * one can clear all ROI's from Python using command ``rx_clearroi`` 
+
+
+1.2.1 Breaking API
+===================
+
+
+1.2.2 Resolved or Changed Features
+===================================
+
+
+
+1.2.3 New Features
+===================
+
+
+2  On-board Detector Server Compatibility
+==========================================
+
+
+    Eiger       10.0.0
+    Jungfrau    10.0.0
+    Mythen3     10.0.0
+    Gotthard2   10.0.0
+    Moench      10.0.0
+  
+
+    On-board Detector Server Upgrade
+    --------------------------------
+
+    From v6.1.0 (without tftp):
+        update only on-board detector server
+            Using command 'updatedetectorserver'
+
+
+        udpate both on-board detector server and firmware simultaneously
+            Using command 'update'
+
+    Instructions available at
+        https://slsdetectorgroup.github.io/devdoc/serverupgrade.html
+
+
+
+
+3 Firmware Requirements
+========================
+
+    Eiger       02.10.2023 (v32)                    (updated in 7.0.3)
+    
+    Jungfrau    09.02.2025 (v1.6, HW v1.0)          (updated in 9.1.0)
+                08.02.2025 (v2.6, HW v2.0)          (updated in 9.1.0)
+
+    Mythen3     13.11.2024 (v2.0)                   (updated in 9.0.0)
+
+    Gotthard2   03.10.2024 (v1.0)                   (updated in 9.0.0)
+
+    Moench      26.10.2023 (v2.0)                   (updated in 8.0.2)
+
+
+    Detector Upgrade
+    ----------------
+
+    The following can be upgraded remotely:
+
+    Eiger      via bit files
+    Jungfrau   via command <.pof>
+    Mythen3    via command <.rbf>
+    Gotthard2  via command <.rbf>
+    Moench     via command <.pof>
+
+    Except Eiger, 
+        upgrade 
+            Using command 'programfpga' or
+
+        udpate both on-board detector server and firmware simultaneously
+            Using command 'update'
+
+
+    Instructions available at
+        https://slsdetectorgroup.github.io/devdoc/firmware.html
+
+
+
+
+4 Kernel Requirements
+======================
+
+
+    Blackfin 
+    --------
+    Latest version: Fri Oct 29 00:00:00 2021
+    
+    Older ones will work, but might have issues with programming firmware via
+    the package.
+
+
+    Nios
+    -----
+    Compatible version: Mon May 10 18:00:21 CEST 2021
+
+
+    Kernel Upgrade
+    ---------------
+    Eiger   via bit files
+    Others  via command
+
+    Commands: udpatekernel, kernelversion
+    Instructions available at
+        https://slsdetectorgroup.github.io/devdoc/commandline.html
+        https://slsdetectorgroup.github.io/devdoc/detector.html
+        https://slsdetectorgroup.github.io/devdoc/pydetector.html
+
+
+
+
+5 Download, Documentation & Support
+====================================
+
+    Download
+    --------
+    
+    The Source Code:
+         https://github.com/slsdetectorgroup/slsDetectorPackage
+            
+    Documentation
+    -------------
+    
+    Installation:
+        https://slsdetectorgroup.github.io/devdoc/installation.html
+
+    Quick Start Guide:
+        https://slsdetectorgroup.github.io/devdoc/quick_start_guide.html
+
+    Firmware Upgrade:
+        https://slsdetectorgroup.github.io/devdoc/firmware.html
+
+    Detector Server upgrade:
+        https://slsdetectorgroup.github.io/devdoc/serverupgrade.html
+
+    Detector Simulators:
+        https://slsdetectorgroup.github.io/devdoc/virtualserver.html
+
+    Consuming slsDetectorPackage:
+        https://slsdetectorgroup.github.io/devdoc/consuming.html
+        
+    Software Architecture
+        https://slsdetectorgroup.github.io/devdoc/softwarearchitecture.html
+
+    Set up commands in config file
+        https://slsdetectorgroup.github.io/devdoc/configcommands.html
+        
+    Image Size and Output Characteristics
+        https://slsdetectorgroup.github.io/devdoc/dataformat.html
+
+    API Examples:
+        https://github.com/slsdetectorgroup/api-examples
+
+    Command Line Documentation:
+        https://slsdetectorgroup.github.io/devdoc/commandline.html
+
+    C++ API Documentation:
+        https://slsdetectorgroup.github.io/devdoc/detector.html
+       
+    C++ API Example:
+        https://slsdetectorgroup.github.io/devdoc/examples.html#
+        
+    Python API Documentation:
+        https://slsdetectorgroup.github.io/devdoc/pygettingstarted.html
+
+    Python API Example:
+        https://slsdetectorgroup.github.io/devdoc/pyexamples.html
+
+    Receivers (including custom receiver):
+        https://slsdetectorgroup.github.io/devdoc/receivers.html
+        https://slsdetectorgroup.github.io/devdoc/slsreceiver.html
+
+    Detector UDP Header:
+        https://slsdetectorgroup.github.io/devdoc/udpheader.html
+        https://slsdetectorgroup.github.io/devdoc/udpdetspec.html
+
+    Output Data:
+        https://slsdetectorgroup.github.io/devdoc/dataformat.html
+        https://slsdetectorgroup.github.io/devdoc/fileformat.html
+        https://slsdetectorgroup.github.io/devdoc/slsreceiverheaderformat.html
+        https://slsdetectorgroup.github.io/devdoc/masterfileattributes.html
+        https://slsdetectorgroup.github.io/devdoc/binaryfileformat.html
+        https://slsdetectorgroup.github.io/devdoc/hdf5fileformat.html
+
+    slsReceiver Zmq Format:
+        https://slsdetectorgroup.github.io/devdoc/slsreceiver.html#zmq-json-header-format
+
+    TroubleShooting:
+        https://slsdetectorgroup.github.io/devdoc/troubleshooting.html
+        https://slsdetectorgroup.github.io/devdoc/troubleshooting.html#receiver-pc-tuning-options
+        
+    Further Documentation:
+        https://www.psi.ch/en/detectors/documentation
+        
+    Info on Releases:
+        https://www.psi.ch/en/detectors/software
+
+
+    Support
+    -------
+
+        dhanya.thattil@psi.ch
+        erik.frojdh@psi.ch
+        alice.mazzoleni@psi.ch

RELEASE.txt

@@ -1,301 +0,0 @@
-SLS Detector Package Bug Fix Release 8.0.2 released on 18.09.2024
-=================================================================
-
-This document describes the differences between v8.0.2 and v8.0.1
-
-
-
-    CONTENTS
-    --------
-    1           Resolved Issues
-    2           On-board Detector Server Compatibility
-    3           Firmware Requirements
-    4           Kernel Requirements
-    5           Download, Documentation & Support
-
-
-
-
-1 Resolved Issues
-=================
-
-
-    Compilation
-    -----------
-
-
-    *   Rapidjson compilation with gcc 14
-        Fixed a compile issue with gcc 14. Same fix in later commits to rapidjson.
-
-
-    Client
-    ------
-
-
-    *   getenv("HOME") returning nullptr
-        When this happens, especially for systemd, it segfaults. Protection 
-        provided by using empty string in this case.
-
-
-    *   [Mythen3] Bad channel list for multi module
-        Exception thrown when loading multi module bad channel file skipping 
-        modules in between. Fixed.
-
-
-    *   [Gotthard2] Stopping a blocking acquisition
-        A check added in v8.0.0 to catch slaves that might be in waiting forever
-        also catches Gotthard2 25um slaves that might only be in waiting 
-        temporarily. This is fixed with a 50ms sleep before checking again 
-        (upto 1s). 
-
-
-    *   [Moench] Acquire finished processing call back
-        New executable 'sls_detector_acquire_zmq' added to listen to all zmq 
-        packets from post processor or external process to signal end of post 
-        processing. Post processor refactoring of zmq socket creation added.
-
-
-    Gui / Callback
-    --------------
-
-
-    *   [Gotthard2] Stopping a blocking acquisition
-        From the previous issue, call back for acquisition finished status gives 
-        error for inconsistent states. Again, a check every 50ms upto 1s is 
-        added to let go the temporarily waiting slave.
-
-
-    *   Different file paths
-        Fixes file path resetting when different modules have different fpath set.
-
-
-    Receiver
-    --------
-
-
-    *   HDF5 fill value
-        Fix the fill value to accomodate all datatypes.
-
-   
-    Firmware
-    --------
-
-
-    *   [Moench] Overflow with exptime of 0
-        Fixed overflow when subtracting 1 clock cycle from exptime.
-
-
-    On-board Detector Server
-    ------------------------
-
-
-    *   [Moench] Few changes in Server:
-        - Max shifts of adc clock changed from 240 to 200. 
-
-        - Fixed overflow when subtracting 2 clock cycles from exptime of 0ms.
-
-        - Default readout speed to half speed from quarter.
-
-        - Change default ADC phase to 150 for full readout speed.
-
-        - Change default vipre_cds dac from 800 to 1280.
-
-
-    *   [Mythen3] Change Clk divider from 10 (100MHz) to 20 (50MHz) at startup.
-
-
-    *   [Jungfrau] Fix for HW v1.0 boards for unreliable ADC 2
-        Issues sometimes seen on some HW v 1.0 boards are fixed with phase 
-        relationship of 120 degrees. HW v2.0 boards are not affected.
-        
-
-    Documentation
-    -------------
-
-
-    *   Updated troubleshooting documentaion to check links and disable firewall
-
-
-    *   Excluded non UTF-8 encoded libzmq documents due to machine dependent 
-        compilation issues.
-
-
-
-2  On-board Detector Server Compatibility
-==========================================
-
-
-    Eiger       8.0.0
-    Jungfrau    8.0.2
-    Mythen3     8.0.2
-    Gotthard2   8.0.0
-    Gotthard    8.0.0
-    Moench      8.0.2
-    Ctb         8.0.0
-    
-
-    On-board Detector Server Upgrade
-    --------------------------------
-
-    From v6.1.0 (without tftp):
-        Using command 'updatedetectorserver'
-
-    Instructions available at
-        https://slsdetectorgroup.github.io/devdoc/serverupgrade.html
-
-
-
-
-3 Firmware Requirements
-========================
-
-
-    Eiger       02.10.2023 (v32)                    (updated in 7.0.3)
-    
-    Jungfrau    20.09.2023 (v1.5, HW v1.0)          (updated in 8.0.0)
-                21.09.2023 (v2.5, HW v2.0)          (updated in 8.0.0)
-
-    Mythen3     24.01.2023 (v1.4)                   (updated in 7.0.0)
-
-    Gotthard2   23.11.2022 (v0.3)                   (updated in 7.0.0)
-
-    Gotthard    08.02.2018 (50um and 25um Master)
-                09.02.2018 (25 um Slave) 
-
-    Moench      26.10.2023 (v0.3.2)                 (updated in 8.0.2, 
-                                                    under development)
-
-    Ctb         28.08.2023 (v1.2)                   (updated in 8.0.0)
-
-
-    Detector Upgrade
-    ----------------
-
-    The following can be upgraded remotely:
-
-    Eiger      via bit files
-    Jungfrau   via command <.pof>
-    Mythen3    via command <.rbf>
-    Gotthard2  via command <.rbf>
-    Moench     via command <.pof>
-    Ctb        via command <.pof>
-
-    Gotthard cannot be upgraded remotely  
-
-    Except Eiger, 
-        upgrade 
-            using command 'programfpga' or
-
-        udpate both server and firmware simultaneously
-            using command 'update'
-
-
-    Instructions available at
-        https://slsdetectorgroup.github.io/devdoc/firmware.html
-
-
-
-
-4 Kernel Requirements
-======================
-
-    Blackfin 
-    --------
-    Latest version: Fri Oct 29 00:00:00 2021
-    
-    Older ones will work, but might have issues with programming firmware via
-    the package.
-
-    Nios
-    -----
-    Compatible version: Mon May 10 18:00:21 CEST 2021
-
-    Kernel Upgrade
-    ---------------
-    Eiger   via bit files
-    Others  via command
-
-    Commands: udpatekernel, kernelversion
-    Instructions available at
-        https://slsdetectorgroup.github.io/devdoc/commandline.html
-        https://slsdetectorgroup.github.io/devdoc/detector.html
-        https://slsdetectorgroup.github.io/devdoc/pydetector.html
-
-
-
-
-5 Download, Documentation & Support
-====================================
-
-    Download
-    --------
-    
-    The Source Code:
-         https://github.com/slsdetectorgroup/slsDetectorPackage
-            
-    Documentation
-    -------------
-    
-    Installation:
-        https://slsdetectorgroup.github.io/devdoc/installation.html
-
-    Quick Start Guide:
-        https://slsdetectorgroup.github.io/devdoc/quick_start_guide.html
-        
-    Firmware Upgrade:
-        https://slsdetectorgroup.github.io/devdoc/firmware.html
-
-    Detector Server upgrade:
-        https://slsdetectorgroup.github.io/devdoc/serverupgrade.html
-
-    Detector Simulators:
-        https://slsdetectorgroup.github.io/devdoc/virtualserver.html
-
-    Consuming slsDetectorPackage:
-        https://slsdetectorgroup.github.io/devdoc/consuming.html
-        
-    API Examples:
-        https://github.com/slsdetectorgroup/api-examples
-
-    Command Line Documentation:
-        https://slsdetectorgroup.github.io/devdoc/commandline.html
-
-    C++ API Documentation:
-        https://slsdetectorgroup.github.io/devdoc/detector.html
-       
-    C++ API Example:
-        https://slsdetectorgroup.github.io/devdoc/examples.html#
-        
-    Python API Documentation:
-        https://slsdetectorgroup.github.io/devdoc/pygettingstarted.html
-
-    Python API Example:
-        https://slsdetectorgroup.github.io/devdoc/pyexamples.html
-
-    Receivers (including custom receiver):
-        https://slsdetectorgroup.github.io/devdoc/receivers.html
-        https://slsdetectorgroup.github.io/devdoc/slsreceiver.html
-
-    Detector UDP Header:
-        https://slsdetectorgroup.github.io/devdoc/udpheader.html
-        https://slsdetectorgroup.github.io/devdoc/udpdetspec.html
-
-    slsReceiver Zmq Format:
-        https://slsdetectorgroup.github.io/devdoc/slsreceiver.html#zmq-json-header-format
-
-    TroubleShooting:
-        https://slsdetectorgroup.github.io/devdoc/troubleshooting.html
-        https://slsdetectorgroup.github.io/devdoc/troubleshooting.html#receiver-pc-tuning-options
-        
-    Further Documentation:
-        https://www.psi.ch/en/detectors/documentation
-        
-    Info on Releases:
-        https://www.psi.ch/en/detectors/software
-
-
-    Support
-    -------
-
-        dhanya.thattil@psi.ch
-        erik.frojdh@psi.ch

VERSION

@@ -0,0 +1 @@
+10.0.0

bash_autocomplete.sh

@@ -0,0 +1 @@
+slsDetectorSoftware/generator/autocomplete/bash_autocomplete.sh

cmake/FindClangFormat.cmake

@@ -25,7 +25,9 @@ mark_as_advanced(
     ClangFormat_BIN)
 
 if(ClangFormat_FOUND)
-    exec_program(${ClangFormat_BIN} ${CMAKE_CURRENT_SOURCE_DIR} ARGS --version OUTPUT_VARIABLE CLANG_VERSION_TEXT)
+    execute_process(COMMAND ${ClangFormat_BIN} --version
+                 WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
+                 OUTPUT_VARIABLE CLANG_VERSION_TEXT)
     string(REGEX MATCH "([0-9]+)\\.[0-9]+\\.[0-9]+" CLANG_VERSION ${CLANG_VERSION_TEXT})
     if((${CLANG_VERSION} GREATER "9") OR (${CLANG_VERSION} EQUAL "9"))
         # A CMake script to find all source files and setup clang-format targets for them

cmake/helpers.cmake

@@ -0,0 +1,46 @@
+function(default_build_type val)
+if (NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
+  message(STATUS "No build type selected, default to Release")
+  set(CMAKE_BUILD_TYPE ${val} CACHE STRING "Build type (default ${val})" FORCE)
+endif()
+endfunction()
+
+function(set_std_fs_lib)
+# from pybind11
+# Check if we need to add -lstdc++fs or -lc++fs or nothing
+if(DEFINED CMAKE_CXX_STANDARD AND CMAKE_CXX_STANDARD LESS 17)
+  set(STD_FS_NO_LIB_NEEDED TRUE)
+elseif(MSVC)
+  set(STD_FS_NO_LIB_NEEDED TRUE)
+else()
+  file(
+    WRITE ${CMAKE_CURRENT_BINARY_DIR}/main.cpp
+    "#include <filesystem>\nint main(int argc, char ** argv) {\n  std::filesystem::path p(argv[0]);\n  return p.string().length();\n}"
+  )
+  try_compile(
+    STD_FS_NO_LIB_NEEDED ${CMAKE_CURRENT_BINARY_DIR}
+    SOURCES ${CMAKE_CURRENT_BINARY_DIR}/main.cpp
+    COMPILE_DEFINITIONS -std=c++17)
+  try_compile(
+    STD_FS_NEEDS_STDCXXFS ${CMAKE_CURRENT_BINARY_DIR}
+    SOURCES ${CMAKE_CURRENT_BINARY_DIR}/main.cpp
+    COMPILE_DEFINITIONS -std=c++17
+    LINK_LIBRARIES stdc++fs)
+  try_compile(
+    STD_FS_NEEDS_CXXFS ${CMAKE_CURRENT_BINARY_DIR}
+    SOURCES ${CMAKE_CURRENT_BINARY_DIR}/main.cpp
+    COMPILE_DEFINITIONS -std=c++17
+    LINK_LIBRARIES c++fs)
+endif()
+
+if(${STD_FS_NEEDS_STDCXXFS})
+  set(STD_FS_LIB stdc++fs PARENT_SCOPE)
+elseif(${STD_FS_NEEDS_CXXFS})
+  set(STD_FS_LIB c++fs PARENT_SCOPE)
+elseif(${STD_FS_NO_LIB_NEEDED})
+  set(STD_FS_LIB "" PARENT_SCOPE)
+else()
+  message(WARNING "Unknown C++17 compiler - not passing -lstdc++fs")
+  set(STD_FS_LIB "")
+endif()
+endfunction()

conda-recepie/build_pylib.sh

@@ -1,6 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-echo "|<-------- starting python build"
-cd python
-${PYTHON} setup.py install

conda-recepie/conda_build_config.yaml

@@ -1,7 +0,0 @@
-python:
-    - 3.8
-    - 3.9
-    - 3.10
-    - 3.11 
-    - 3.12
-    

conda-recepie/copy_ctbgui.sh

@@ -1,11 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-mkdir $PREFIX/lib
-mkdir $PREFIX/bin
-mkdir $PREFIX/include
-
-
-
-cp build/bin/ctbGui $PREFIX/bin/.
-cp build/bin/libctbRootLib.so $PREFIX/lib/.
-

conda-recepie/meta.yaml

@@ -1,126 +0,0 @@
-
-package:
-  name: sls_detector_software
-  version: {{ environ.get('GIT_DESCRIBE_TAG', '') }}
-
-source:
-  - path: ..
-
-build:
-  number: 0
-  binary_relocation: True
-  rpaths:
-    - lib/
-
-requirements:
-  build:
-    - {{ compiler('c') }}
-    - {{compiler('cxx')}}
-    - cmake
-    - qt 5.*
-    - xorg-libx11
-    - xorg-libice
-    - xorg-libxext
-    - xorg-libsm
-    - xorg-libxau
-    - xorg-libxrender
-    - xorg-libxfixes
-    - {{ cdt('mesa-libgl-devel') }}      # [linux]
-    - {{ cdt('mesa-libegl-devel') }}     # [linux]
-    - {{ cdt('mesa-dri-drivers') }}      # [linux]
-    - {{ cdt('libselinux') }}            # [linux]
-    - {{ cdt('libxdamage') }}            # [linux]
-    - {{ cdt('libxxf86vm') }}            # [linux]
-    - expat
-
-  host:
-    - libstdcxx-ng
-    - libgcc-ng
-    - xorg-libx11
-    - xorg-libice
-    - xorg-libxext
-    - xorg-libsm
-    - xorg-libxau
-    - xorg-libxrender
-    - xorg-libxfixes
-    - expat
-
-  run:
-    - libstdcxx-ng
-    - libgcc-ng 
-
-
-outputs:
-  - name: slsdetlib
-    script: copy_lib.sh
-
-    requirements:
-      build:
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-        - libstdcxx-ng
-        - libgcc-ng
-
-
-      run: 
-        - libstdcxx-ng
-        - libgcc-ng
-
-  - name: slsdet
-
-    script: build_pylib.sh
-
-    requirements:
-      build:
-        - python
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-        - setuptools
-        - pybind11=2.11
-
-      host:
-        - python
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-        - pybind11=2.11
-
-
-      run:
-        - libstdcxx-ng
-        - libgcc-ng
-        - python
-        - numpy
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-
-
-    test:
-      imports:
-        - slsdet
-
-  - name: slsdetgui
-    script: copy_gui.sh
-    requirements:
-
-      build:
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-
-      run:
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-        - qt 5.*
-        - expat
-
-  - name: moenchzmq
-    script: copy_moench.sh
-    requirements:
-
-      build:
-        - {{ compiler('c') }}
-        - {{compiler('cxx')}}
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-
-
-      run:
-        - {{ pin_subpackage('slsdetlib', exact=True) }}
-        - expat

conda-recepie/run_test.sh

@@ -1,3 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-ctest -j2

conda-recipes/main-library/build.sh

@@ -1,10 +1,14 @@
 # SPDX-License-Identifier: LGPL-3.0-or-other
 # Copyright (C) 2021 Contributors to the SLS Detector Package
 
-mkdir build
-mkdir install
+if [ ! -d "build" ]; then
+    mkdir build
+fi
+if [ ! -d "install" ]; then
+    mkdir install
+fi
 cd build
-cmake .. \
+cmake .. -G Ninja \
       -DCMAKE_PREFIX_PATH=$CONDA_PREFIX \
       -DCMAKE_INSTALL_PREFIX=install \
       -DSLS_USE_TEXTCLIENT=ON \
@@ -14,7 +18,7 @@ cmake .. \
       -DSLS_USE_TESTS=ON \
       -DSLS_USE_PYTHON=OFF \
       -DCMAKE_BUILD_TYPE=Release \
-      -DSLS_USE_HDF5=OFF\
+      -DSLS_USE_HDF5=OFF \
      
 NCORES=$(getconf _NPROCESSORS_ONLN)
 echo "Building using: ${NCORES} cores"

conda-recipes/main-library/conda_build_config.yaml

@@ -0,0 +1,13 @@
+
+c_compiler:
+  - gcc                        # [linux]
+
+c_stdlib:
+  - sysroot                    # [linux]
+
+cxx_compiler:
+  - gxx                        # [linux]
+
+
+c_stdlib_version:              # [linux]
+  - 2.17                       # [linux]

conda-recipes/main-library/copy_lib.sh

@@ -4,18 +4,20 @@
 mkdir -p $PREFIX/lib
 mkdir -p $PREFIX/bin
 mkdir -p $PREFIX/include/sls
-# mkdir $PREFIX/include/slsDetectorPackage
 
 #Shared and static libraries
 cp build/install/lib/* $PREFIX/lib/
 
 #Binaries
 cp build/install/bin/sls_detector_acquire $PREFIX/bin/.
+cp build/install/bin/sls_detector_acquire_zmq $PREFIX/bin/.
 cp build/install/bin/sls_detector_get $PREFIX/bin/.
 cp build/install/bin/sls_detector_put $PREFIX/bin/.
 cp build/install/bin/sls_detector_help $PREFIX/bin/.
+cp build/install/bin/sls_detector $PREFIX/bin/.
 cp build/install/bin/slsReceiver $PREFIX/bin/.
 cp build/install/bin/slsMultiReceiver $PREFIX/bin/.
+cp build/install/bin/slsFrameSynchronizer $PREFIX/bin/.
 
 
 cp build/install/include/sls/* $PREFIX/include/sls

conda-recipes/main-library/meta.yaml

@@ -0,0 +1,79 @@
+source:
+  path: ../..
+
+{% set version = load_file_regex(load_file = 'VERSION', regex_pattern = '(\d+(?:\.\d+)*(?:[\+\w\.]+))').group(1) %}
+package:
+  name: sls_detector_software
+  version: {{ version }} 
+  
+build:
+  number: 0
+  binary_relocation: True
+  rpaths: 
+    - lib/
+
+requirements:
+  build:
+    - {{ compiler('c') }}
+    - {{ stdlib("c") }}
+    - {{ compiler('cxx') }}
+    - git
+    - cmake
+    - ninja
+    - qt 5.*
+
+  host:
+    - libstdcxx-ng
+    - libgcc-ng
+    - libgl-devel  # [linux]
+    - libtiff
+    - zlib
+    - expat
+  
+  run:
+    - libstdcxx-ng
+    - libgcc-ng 
+
+
+outputs:
+  - name: slsdetlib
+    script: copy_lib.sh
+
+    requirements:
+      build:
+        - {{ compiler('c') }}
+        - {{ stdlib("c") }}
+        - {{ compiler('cxx') }}
+
+      run: 
+        - libstdcxx-ng
+        - libgcc-ng
+
+
+  - name: slsdetgui
+    script: copy_gui.sh
+    requirements:
+
+      build:
+        - {{ compiler('c') }}
+        - {{compiler('cxx')}}
+        - {{ pin_subpackage('slsdetlib', exact=True) }}
+        
+
+      run:
+        - {{ pin_subpackage('slsdetlib', exact=True) }}
+        - qt 5.*
+
+
+  - name: moenchzmq
+    script: copy_moench.sh
+    requirements:
+
+      build:
+        - {{ compiler('c') }}
+        - {{compiler('cxx')}}
+        - {{ pin_subpackage('slsdetlib', exact=True) }}
+
+
+      run:
+        - {{ pin_subpackage('slsdetlib', exact=True) }}

conda-recipes/python-client/conda_build_config.yaml

@@ -0,0 +1,16 @@
+python:
+    - 3.11 
+    - 3.12
+    - 3.13
+
+c_compiler:
+  - gcc                        # [linux]
+
+c_stdlib:
+  - sysroot                    # [linux]
+
+cxx_compiler:
+  - gxx                        # [linux]
+
+c_stdlib_version:              # [linux]
+  - 2.17                       # [linux]

conda-recipes/python-client/meta.yaml

@@ -0,0 +1,45 @@
+source:
+  path: ../..
+
+{% set version = load_file_regex(load_file = 'VERSION', regex_pattern = '(\d+(?:\.\d+)*(?:[\+\w\.]+))').group(1) %}
+package:
+  name: slsdet
+  version: {{ version }} 
+
+build:
+  number: 0
+  script:
+    - unset CMAKE_GENERATOR && {{ PYTHON }} -m pip install . -vv  # [not win]
+
+requirements:
+  build:
+    - python {{python}}
+    - {{ compiler('c') }}
+    - {{ stdlib("c") }}
+    - {{ compiler('cxx') }}
+
+  host:
+    - cmake
+    - ninja
+    - python {{python}}
+    - pip
+    - scikit-build-core
+    - pybind11 >=2.13.0
+    - fmt
+    - zeromq
+    - nlohmann_json
+    - catch2
+
+  run:
+    - python {{python}}
+    - numpy
+
+
+test:
+  imports:
+    - slsdet
+
+
+about:
+  summary: An example project built with pybind11 and scikit-build.
+  # license_file: LICENSE

ctbGui/CMakeLists.txt

@@ -1,90 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-find_package(ROOT CONFIG REQUIRED  COMPONENTS Core Gui)
-find_package(TIFF REQUIRED)
-
-target_include_directories(ROOT::Core INTERFACE "${ROOT_INCLUDE_DIRS}")
-add_library(ROOT::Flags_CXX IMPORTED INTERFACE)
-separate_arguments(ROOT_CXX_FLAGS)
-target_compile_options(ROOT::Flags_CXX INTERFACE ${ROOT_CXX_FLAGS})
-separate_arguments(ROOT_DEFINITIONS)
-target_compile_definitions(ROOT::Flags_CXX INTERFACE ${ROOT_DEFINITIONS})
-
-# This fixes a bug in the linker flags
-string(REPLACE "-L " "-L" ROOT_EXE_LINKER_FLAGS "${ROOT_EXE_LINKER_FLAGS}")
-separate_arguments(ROOT_EXE_LINKER_FLAGS)
-
-# Stuck into using old property method due to separate -L and -l arguments
-# (A full path to -l is better!)
-set_property(TARGET ROOT::Flags_CXX PROPERTY
-    INTERFACE_LINK_LIBRARIES ${ROOT_EXE_LINKER_FLAGS})
-set_property(TARGET ROOT::Core PROPERTY
-    INTERFACE_INCLUDE_DIRECTORIES "${ROOT_INCLUDE_DIRS}")
-
-
-add_executable(ctbGui 
-    ctbGui.cpp 
-    ctbMain.cpp
-    ctbDacs.cpp
-    ctbPowers.cpp
-    ctbSlowAdcs.cpp
-    ctbSignals.cpp
-    ctbAdcs.cpp
-    ctbPattern.cpp
-    ctbAcquisition.cpp
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/tiffio/src/tiffIO.cpp
-)
-
-
-#TODO! Replace with target
-target_include_directories(ctbGui PRIVATE 
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/dataStructures
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/interpolations
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/
-    ${CMAKE_SOURCE_DIR}/slsDetectorCalibration/tiffio/include/
-)
-
-# Headders needed for ROOT dictionary generation
-set( HEADERS
-    ctbDefs.h
-    ctbMain.h 
-    ctbDacs.h   
-    ctbPattern.h  
-    ctbSignals.h  
-    ctbAdcs.h 
-    ctbAcquisition.h 
-    ctbPowers.h   
-    ctbSlowAdcs.h
-)
-
-#set(ROOT_INCLUDE_PATH ${CMAKE_CURRENT_SOURCE_DIR})
-
-# ROOT dictionary generation 
-root_generate_dictionary(ctbDict ${HEADERS} LINKDEF ctbLinkDef.h)
-add_library(ctbRootLib SHARED ctbDict.cxx)
-target_include_directories(ctbRootLib PUBLIC ${CMAKE_CURRENT_SOURCE_DIR})
-target_link_libraries(ctbRootLib PUBLIC 
-    ROOT::Core 
-    slsDetectorShared
-    ${ROOT_LIBRARIES} 
-    ${ROOT_EXE_LINKER_FLAGS}
-)
-
-set_target_properties(
-    ctbRootLib PROPERTIES
-    LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-)
-
-target_link_libraries(ctbGui PUBLIC 
-    slsDetectorShared
-    ctbRootLib
-    ${TIFF_LIBRARIES}
-)
-
-set_target_properties(ctbGui PROPERTIES
-    RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin
-
-)
-

ctbGui/Makefile.root5

@@ -1,46 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-INCS=ctbMain.h ctbDacs.h   ctbPattern.h  ctbSignals.h  ctbAdcs.h ctbAcquisition.h ctbPowers.h   ctbSlowAdcs.h 
-SRC= $(INCS:.h=.cpp) ctbDict.cpp 
-LINKDEF=ctbLinkDef.h 
-ZMQLIB=../slsReceiverSoftware/include
-LIBRARYCBF=$(CBFLIBDIR)/lib/*.o
-
-INCDIR=-I../slsReceiverSoftware/include/ -I../slsDetectorSoftware/include/ -I../slsSupportLib/include/  -I../slsDetectorCalibration -I../slsDetectorCalibration/dataStructures  -I$(CBFLIBDIR)/include  -I../slsDetectorCalibration/interpolations
-LDFLAG=-L../build/bin -lSlsDetector -lSlsSupport  -L/usr/lib64/ -lpthread -lm  -lstdc++  -lzmq -pthread -lrt  -ltiff -L$(ZMQLIB) -L$(CBFLIBDIR)/lib/ -std=c++11
-#
-MAIN=ctbGui.cpp
-
-DESTDIR?=../build/bin
-
-
-OBJS = $(SRC:.cpp=.o) $(MAIN:.cpp=.o)
-
-all: $(DESTDIR)/ctbGui
-
-
-doc:
-	cd manual && make DESTDIR=$(DESTDIR)
-
-htmldoc:
-	cd manual && make html DESTDIR=$(DESTDIR)
-
-ctbDict.cpp: $(INCS)  $(LINKDEF)
-	rootcint -f ctbDict.cpp -c $(INCS) $(LINKDEF)	
-
-%.o : %.cpp 
-	echo $@
-	g++ -DMYROOT `root-config --cflags --glibs` -lMinuit -DCTB $(LDFLAG)  -o $@ -c $< $(INCDIR)
-#$(CXX) -o $@ -c $< $(INCLUDES) $(DFLAGS) -fPIC  $(EPICSFLAGS) -lpthread #$(FLAGS)
-
-
-
-$(DESTDIR)/ctbGui: $(OBJS) $(LINKDEF) 
-	g++ -DMYROOT `root-config --cflags --glibs` -lMinuit -DCTB $(LDFLAG) -o ctbGui $(INCDIR) $(OBJS)  ../slsDetectorCalibration/tiffIO.cpp
-	mv ctbGui $(DESTDIR)	
-
-clean:
-	rm -f $(DESTDIR)/ctbGui *.o ctbDict.* $(OBJS)
-

ctbGui/Makefile.root6

@@ -1,48 +0,0 @@
-# SPDX-License-Identifier: LGPL-3.0-or-other
-# Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-INCS=ctbMain.h ctbDacs.h   ctbPattern.h  ctbSignals.h  ctbAdcs.h ctbAcquisition.h ctbPowers.h   ctbSlowAdcs.h  
-SRC= $(INCS:.h=.cpp) ctbDict.cpp 
-LINKDEF=ctbLinkDef.h 
-#ctbActions.h 
-ZMQLIB=../slsReceiverSoftware/include
-LIBRARYCBF=$(CBFLIBDIR)/lib/*.o
-
-INCDIR=-I../slsReceiverSoftware/include/ -I../slsDetectorSoftware/include/ -I../slsSupportLib/include/  -I../slsDetectorCalibration -I../slsDetectorCalibration/dataStructures  -I$(CBFLIBDIR)/include  -I../slsDetectorCalibration/interpolations
-
-LDFLAG=-L../build/bin -lSlsDetector -lSlsSupport  -L/usr/lib64/ -lpthread -lm  -lstdc++  -lzmq -pthread -lrt  -ltiff -L$(ZMQLIB) -L$(CBFLIBDIR)/lib/ -std=c++11
-#
-MAIN=ctbGui.cpp
-
-DESTDIR?=../build/bin
-
-
-OBJS = $(SRC:.cpp=.o) $(MAIN:.cpp=.o)
-
-all: $(DESTDIR)/ctbGui
-
-
-doc:
-	cd manual && make DESTDIR=$(DESTDIR)
-
-htmldoc:
-	cd manual && make html DESTDIR=$(DESTDIR)
-
-ctbDict.cpp: $(INCS)  $(LINKDEF)
-	rootcling -f ctbDict.cpp -c $(INCS) $(LINKDEF)	
-
-%.o : %.cpp 
-	echo $@
-	g++ -DMYROOT `source root-config --cflags --glibs` -lMinuit -DCTB $(LDFLAG)  -o $@ -c $< $(INCDIR)
-#$(CXX) -o $@ -c $< $(INCLUDES) $(DFLAGS) -fPIC  $(EPICSFLAGS) -lpthread #$(FLAGS)
-
-
-
-$(DESTDIR)/ctbGui: $(OBJS) $(LINKDEF) 
-	g++ -DMYROOT `source root-config --cflags --glibs` -lMinuit -DCTB $(LDFLAG) -o ctbGui $(INCDIR) $(OBJS)  ../slsDetectorCalibration/tiffIO.cpp
-	mv ctbGui $(DESTDIR)	
-
-clean:
-	rm -f $(DESTDIR)/ctbGui *.o ctbDict.* $(OBJS)
-

ctbGui/ctbAcquisition.h

@@ -1,248 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef CTBACQUISITION_H
-#define CTBACQUISITION_H
-#include  <TGFrame.h>
-
-#include "ctbAdcs.h"
-#include "ctbSignals.h"
-#include "ctbPattern.h"
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TGCheckButton;
-class TThread;
-class TGraph;
-class TMultiGraph;
-class THStack;
-class TGButtonGroup;
-class TGRadioButton;
-class TGComboBox;
-class TTimer;
-class TCanvas;
-class TH2F;
-class TH1F;
-class TGLabel;
-class TGTextButton;
-
-namespace sls
-{
-   class Detector;
-   class detectorData;
-};
-
-template <class dataType> class slsDetectorData;
-
-class singlePhotonDetector;
-//class singlePhotonDetector;
-class commonModeSubtraction;
-
-#include <string>
-#include <stdint.h>
-using namespace std;
-
-class ctbAcquisition : public TGGroupFrame {
-
-
-  enum {DESERIALIZER, MOENCH04, MOENCH02, MOENCH03, IMAGE32B, IMAGE16B, ADCSAR2, MYTHEN301, MYTHEN302};
-
-
- private:
-  TGTextEntry *eOutdir;
-  TGTextEntry *eFname;
-  TGNumberEntry *eFindex;
-  TGCheckButton *cFileSave;
-
-
-  TGNumberEntry *eSerOff;
-  TGNumberEntry *eDynRange;
-  TGNumberEntry *eNumCount;
-
-
-  TGNumberEntry *ePixX;
-  TGNumberEntry *ePixY;
-
-  TGNumberEntry *eFitADC;
-  TGNumberEntry *eBitPlot;
-  TGNumberEntry *eMinRaw;
-  TGNumberEntry *eMaxRaw;
-  TGNumberEntry *eMinPedSub;
-  TGNumberEntry *eMaxPedSub;
-  TGCheckButton *cMinMaxRaw;
-  TGCheckButton *cMinMaxPedSub;
-
-
-
-
-  TGNumberEntry *eMeasurements;
-
-
-
-  TGTextButton *bStatus;
-  // TGTextButton 
-  TGCheckButton *cCompile;
-  TGTextButton *cLoad;
-  //  TGCheckButton *cRun;
-  
-  TThread *acqThread;
-
-
-  THStack *adcStack;
-  THStack *bitStack;
-  THStack *countsStack;
-
-
-  TH1F *adcHisto[NADCS];
-  TH1F *countsHisto[NADCS];
- 
-  TH1F *bitHisto[NSIGNALS];
-  float bitOffset[NSIGNALS];
-  
-  // int enableFlag[NADCS+4];
-  int roMode;
-
-  int dBitOffset;
-
-
-
-  TH1F *adcFit;
-  TH1F *bitPlot;
-  TH1F *countsFit;
-
-
-
-  TH2F *h2DMapAn; // for 2D detectors
-  TH2F *h2DMapDig; // for 2D detectors
-  TH1F *h1DMap; //for 1D detectors
-
-  //  TH2F *h2Scan; // for 2D detectors
-  // TMultiGraph *mgAdcs;
-  // TH1I *plotAdc[NADCS];
-
-
-  sls::Detector* myDet;
-  
-  int plotFlag[NADCS];
-  int bitPlotFlag[NSIGNALS];
-  
-  int ip;
-  // int nChannels;
-  // int chanEnable;
-  //int nADCs;
-
-  std::vector <int> dbitlist;
-  std::vector <int> adclist;
-
-  TGButtonGroup *bgPlot;// = new TGVButtonGroup(main_frame);
-  TGRadioButton *rbPlotOff;
-  TGRadioButton *rbWaveform;
-  TGRadioButton *rbDistribution;
-  TGRadioButton *rb2D;
-  //  TGRadioButton *rbScan;
-  TGComboBox *cbDetType;
-  TGCheckButton *cbGetPedestal;
-  TGCheckButton *cbSubtractPedestal;
-  TGCheckButton *cbCommonMode;
-  TGTextButton *bResetPedestal;
-
-  TGLabel *lClickX;
-  TGLabel *lClickY;
-  TGLabel *lClickValue;
-
-
-  TCanvas *myCanvas;
-  TTimer *plotTimer;
-
-  char patternFile[10000];
-  char patternCompiler[10000];
-  
-  int globalPlot;
-  int adcPlot;
-  int dbitPlot;
-  int tenG;
-
-  int nAnalogSamples, nDigitalSamples;
-  // int iScanStep;
-
-  slsDetectorData<uint16_t> *dataStructure;
-  singlePhotonDetector *photonFinder;
-    //singlePhotonDetector *photonFinder;
-  commonModeSubtraction *commonMode;
-  int cmSub;
-
-  int stop;
-
-  uint64_t dBitMask;
-
-  int deserializer;
-
- public:
-   ctbAcquisition(TGVerticalFrame*,  sls::Detector*);
-   void setOutdir();
-   void setFname();
-   void setMeasurements();
-   void setFsave(Bool_t);
-   void changePlot(Int_t);
-   void changeDetector(Int_t);
-   void changePlot();
-   void changeDetector();
-   void setFindex();
-   void Draw();
-   void setCanvas(TCanvas*);
-
-   void toggleAcquisition();
-   void loadPattern();
-   static void* ThreadHandle(void *arg);
-   void update();
-   void acquisitionFinished();
-   //  string getParameters();
-
-   void setGraph (int i ,int en, Pixel_t col);
-   void setBitGraph (int i ,int en, Pixel_t col);
-   void startAcquisition();
-   static   void progressCallback(double,void*);
-   static void dataCallback(sls::detectorData*, long unsigned int, unsigned int,  void*);
-   int StopFlag;
-   
-   int plotData(sls::detectorData*, int);
-
-   void setPatternFile(const char* t);
-
-   void setPatternCompiler(const char* t);
-
-   void setAnalogSamples(int);
-   void setDigitalSamples(int);
-   
-   void setADCEnable(Int_t);
-   void setDbitEnable(Int_t);
-   void setReadoutMode(int);
-   void updateChans();
-
-   void resetPedestal();
-
-   void ToggleCommonMode(Bool_t);
-   void TogglePedSub(Bool_t);
-   void ChangeHistoLimitsPedSub(Long_t );
-   void ChangeHistoLimitsRaw(Long_t);
-   void ChangeHistoLimitsPedSub( );
-   void ChangeHistoLimitsRaw();
-   void ChangeHistoLimitsPedSub(Bool_t );
-   void ChangeHistoLimitsRaw(Bool_t);
-   
-
-   void ChangeSerialOffset();
-   void ChangeSerialOffset(Long_t);
-   void ChangeNumberOfChannels();
-   void ChangeNumberOfChannels(Long_t);
-   void ChangeDynamicRange();
-   void ChangeDynamicRange(Long_t);
-   void ChangeImagePixels();
-   void ChangeImagePixels(Long_t);
-
-   void canvasClicked();
-   void FitADC();
-   void plotBit();
-   ClassDef(ctbAcquisition,0)
-};
-
-#endif

ctbGui/ctbAdcs.cpp

@@ -1,616 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#include <TApplication.h>
-#include <TGClient.h>
-#include <TCanvas.h>
-#include <TF1.h>
-#include <TRandom.h>
-#include <TGButton.h>
-#include <TRootEmbeddedCanvas.h>
-#include <TGButtonGroup.h>
-#include <TGNumberEntry.h>
-#include <TGLabel.h>
-#include <TList.h>
-#include <TGFileDialog.h>
-#include <TGComboBox.h>
-#include <TH2F.h>
-#include <TColor.h>
-#include <TH1F.h>
-#include <TGraphErrors.h>
-#include <TGColorSelect.h>
-#include <THStack.h>
-#include <TGTab.h>
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-
-#include "ctbAdcs.h"
-#include "ctbDefs.h"
-#include "sls/Detector.h"
-
-using namespace std;
-
-
-
-ctbAdc::ctbAdc(TGVerticalFrame *page, int i, sls::Detector *det)
-  : TGHorizontalFrame(page, 800,800), id(i), myDet(det) {
-
-  TGHorizontalFrame *hframe=this;
-  char tit[100];
-
-   page->AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-   hframe->MapWindow();
-
-
-   
-
-
-   sprintf(tit, "ADC%d", id);
-
-   sAdcLabel= new TGLabel(hframe, tit);
-   hframe->AddFrame(sAdcLabel,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sAdcLabel->MapWindow();
-   sAdcLabel->SetTextJustify(kTextLeft);
-
-
-
-   
-   
-
-   sAdcInvert= new TGCheckButton(hframe, "Inv");
-   hframe->AddFrame( sAdcInvert,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sAdcInvert->MapWindow();
-   sAdcInvert->Connect("Toggled(Bool_t)","ctbAdc",this,"ToggledInvert(Bool_t)");
-
-
-   sAdcEnable= new TGCheckButton(hframe, "En");
-   hframe->AddFrame( sAdcEnable,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sAdcEnable->MapWindow();
-   // sAdcEnable->SetOn(kTRUE);
-   // sAdcEnable->SetEnabled(kFALSE);
-   sAdcEnable->Connect("Toggled(Bool_t)","ctbAdc",this,"ToggledEnable(Bool_t)");
-
-
-
-   sAdcPlot= new TGCheckButton(hframe, "Plot");
-   hframe->AddFrame( sAdcPlot,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sAdcPlot->MapWindow();
-
-
-   sAdcPlot->Connect("Toggled(Bool_t)","ctbAdc",this,"ToggledPlot(Bool_t)");
-
-
-
-   fColorSel = new TGColorSelect(hframe, id+1, 0);
-
-   fColorSel->Connect("ColorSelected(Pixel_t)","ctbAdc",this,"ColorChanged(Pixel_t)");
-   hframe->AddFrame(fColorSel, new TGLayoutHints(kLHintsTop |
-                          kLHintsLeft, 2, 0, 2, 2));
-   
-
-   fColorSel->SetColor(TColor::Number2Pixel(id+1));
-   //   sprintf(tit,"adc%d",id);
-//    gADC=new TGraph();
-//    gADC->SetName(tit);
-//    gADC->SetLineColor(id+1);
-//    gADC->SetMarkerColor(id+1);
-   
-   
-
-};
-Pixel_t ctbAdc::getColor(){
-  return fColorSel->GetColor();
-}
-Bool_t ctbAdc::getEnabled(){
-  return getPlot();
-}
-Bool_t ctbAdc::getPlot(){
-  return sAdcPlot->IsOn();
-}
-Bool_t ctbAdc::getInverted(){
-  return sAdcInvert->IsOn();
-}
-
-Bool_t ctbAdc::getEnable(){
-  return sAdcEnable->IsOn();
-}
-
-
-
-void ctbAdc::setInverted(Bool_t b){
-  //  cout << id << "set enabled " << b << endl;
-  if (b)
-    sAdcInvert->SetOn(kTRUE,kTRUE);
-  else
-    sAdcInvert->SetOn(kFALSE,kTRUE);
-    
-}
-
-
-void ctbAdc::setEnable(Bool_t b){
-  //  cout << id << "set enabled " << b << endl;
-  if (b)
-    sAdcEnable->SetOn(kTRUE,kFALSE);
-  else
-    sAdcEnable->SetOn(kFALSE,kFALSE);
-    
-}
-
-
-
-
-
-void ctbAdc::setAdcAlias(char *tit, int plot, int color) {
-  if (tit)
-    sAdcLabel->SetText(tit);
-  if (plot>0)
-    sAdcPlot->SetOn(kTRUE,kTRUE);
-  else if (plot==0)
-    sAdcPlot->SetOn(kFALSE,kTRUE);
-  if (color>=0)
-    fColorSel->SetColor(color);
-  fColorSel->SetEnabled(sAdcPlot->IsOn());
-}
-
-
-string ctbAdc::getAdcAlias() {
-
-  char line[1000];
-  sprintf(line,"ADC%d %s %d %lx\n",id,sAdcLabel->GetText()->Data(),sAdcPlot->IsOn(),fColorSel->GetColor());
-  return string(line);
-}
-
-void ctbAdc::update() {
-
-  
-  //Emit("ToggledAdcEnable(Int_t)", id);
-  
-}
-
-
-void ctbAdc::ToggledPlot(Bool_t b){
-
-  //  Long_t mask=b<<id;
-  //  ToggledAdcPlot(mask);
-  cout << "Colsel " << id << " enable " << b << endl;
-  if (b)
-    fColorSel->SetEnabled(kTRUE);
-  else
-    fColorSel->SetEnabled(kFALSE);
-    
-  // fColorSel->SetEnabled(sAdcPlot->IsOn());
-  Emit("ToggledAdcPlot(Int_t)", id);
-  
-}
-
-
-
-void ctbAdc::ToggledInvert(Bool_t b){
-
-    
-  // fColorSel->SetEnabled(sAdcPlot->IsOn());
-  Emit("ToggledAdcInvert(Int_t)", id);
-  
-}
-
-
-
-void ctbAdc::ToggledEnable(Bool_t b){
-
-    
-  fColorSel->SetEnabled(sAdcPlot->IsOn());
-  Emit("ToggledAdcEnable(Int_t)", id);
-  
-}
-
-
-
-
-
-
-void ctbAdc::ColorChanged(Pixel_t) {
-  
-  Emit("ToggledAdcPlot(Int_t)", id);
-
-}
-
-void ctbAdc::ToggledAdcPlot(Int_t b){
-
-  
-  Emit("ToggledAdcPlot(Int_t)", id);
-
-}
-
-void ctbAdc::ToggledAdcInvert(Int_t b){
-
-  
-  Emit("ToggledAdcInvert(Int_t)", id);
-
-}
-
-void ctbAdc::ToggledAdcEnable(Int_t b){
-
-  
-  Emit("ToggledAdcEnable(Int_t)", id);
-
-}
-
-
-
-
-void ctbAdc::setEnabled(Bool_t b){
-  //  cout << id << "set enabled " << b << endl;
-  if (b)
-    sAdcPlot->SetOn(kTRUE,kFALSE);
-  else
-    sAdcPlot->SetOn(kFALSE,kFALSE);
-    
-}
-
-
-
-void ctbAdc::setPlot(Bool_t b){
-  //  cout << id << "set enabled " << b << endl;
-  if (b)
-    sAdcPlot->SetOn(kTRUE,kTRUE);
-  else
-    sAdcPlot->SetOn(kFALSE,kTRUE);
-    
-  
-}
-
-
-
-
-
-
-
-ctbAdcs::ctbAdcs(TGVerticalFrame *page, sls::Detector *det)
-  : TGGroupFrame(page,"Adcs",kVerticalFrame), myDet(det) {
-
-
-  SetTitlePos(TGGroupFrame::kLeft);
-  page->AddFrame(this,new TGLayoutHints( kLHintsTop | kLHintsExpandX , 10,10,10,10));
-  MapWindow();
-  
-
- 
-  TGHorizontalFrame* hframe=new TGHorizontalFrame(this, 800,800);
-  AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
-
-
-  int idac=0;
-
-
-
-
- 
-  TGHorizontalFrame* hhframe=new TGHorizontalFrame(this, 800,800);
-  AddFrame(hhframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hhframe->MapWindow();
-
-  TGVerticalFrame *vframe;
-
-
-
-
-  for (idac=0; idac<NADCS; idac++) {
-    if (idac%16==0) {
-
-
-    vframe=new TGVerticalFrame(hhframe, 400,800);
-     hhframe->AddFrame(vframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    vframe->MapWindow();
-   
-  
-
-    }
-
-    sAdc[idac]=new ctbAdc(vframe,idac,myDet);
-
-    
-    sAdc[idac]->Connect("ToggledAdcPlot(Int_t)","ctbAdcs",this,"ToggledAdcPlot(Int_t)");
-    sAdc[idac]->Connect("ToggledAdcInvert(Int_t)","ctbAdcs",this,"ToggledAdcInvert(Int_t)");
-    sAdc[idac]->Connect("ToggledAdcEnable(Int_t)","ctbAdcs",this,"ToggledAdcEnable(Int_t)");
-
-  }
-
-  hframe=new TGHorizontalFrame(this, 800,800);
-  AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
-    bCheckHalf[0]=new TGTextButton(hframe, "All 0-15");
-    hframe->AddFrame(bCheckHalf[0],new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 5, 5, 5, 5));
-    bCheckHalf[0]->MapWindow();
-    bCheckHalf[0]->Connect("Clicked()","ctbAdcs",this,"CheckHalf0()");
-
-
-    bRemoveHalf[0]=new TGTextButton(hframe, "None 0-15");
-    hframe->AddFrame(bRemoveHalf[0],new TGLayoutHints(kLHintsBottom |  kLHintsExpandX, 5, 5, 5, 5));
-    bRemoveHalf[0]->MapWindow();
-    bRemoveHalf[0]->Connect("Clicked()","ctbAdcs",this,"RemoveHalf0()");
-
-
-    bCheckHalf[1]=new TGTextButton(hframe, "All 16-23");
-    hframe->AddFrame(bCheckHalf[1],new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 5, 5, 5, 5));
-    bCheckHalf[1]->MapWindow();
-    bCheckHalf[1]->Connect("Clicked()","ctbAdcs",this,"CheckHalf1()");
-    //  bCheckAll->Connect("Clicked()","ctbAdcs",this,"CheckAll()");
-
-
-    bRemoveHalf[1]=new TGTextButton(hframe, "None 16-23");
-    hframe->AddFrame(bRemoveHalf[1],new TGLayoutHints(kLHintsBottom |  kLHintsExpandX, 5, 5, 5, 5));
-    bRemoveHalf[1]->MapWindow();
-    bRemoveHalf[1]->Connect("Clicked()","ctbAdcs",this,"RemoveHalf1()");
-    // bRemoveAll->Connect("Clicked()","ctbAdcs",this,"RemoveAll()");
-
-
-
-
-  hframe=new TGHorizontalFrame(this, 800,800);
-  AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
-    bCheckAll=new TGTextButton(hframe, "All");
-    hframe->AddFrame(bCheckAll,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 5, 5, 5, 5));
-    bCheckAll->MapWindow();
-    bCheckAll->Connect("Clicked()","ctbAdcs",this,"CheckAll()");
-
-
-    bRemoveAll=new TGTextButton(hframe, "None");
-    hframe->AddFrame(bRemoveAll,new TGLayoutHints(kLHintsBottom |  kLHintsExpandX, 5, 5, 5, 5));
-    bRemoveAll->MapWindow();
-    bRemoveAll->Connect("Clicked()","ctbAdcs",this,"RemoveAll()");
-
-
-
-  hframe=new TGHorizontalFrame(this, 800,50);
- AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
-  TGLabel *label= new TGLabel(hframe, "Inversion mask: ");
-   hframe->AddFrame(label,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   label->MapWindow();
-   label->SetTextJustify(kTextLeft);
-
-
-   eInversionMask = new TGNumberEntry(hframe, 0, 16,999, TGNumberFormat::kNESHex,
-                                               TGNumberFormat::kNEANonNegative, 
-                                               TGNumberFormat::kNELNoLimits);
-
-  hframe->AddFrame(eInversionMask,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 1, 1, 1, 1));
-   eInversionMask->MapWindow();
-   eInversionMask->Resize(150,30);
-   eInversionMask->SetState(kFALSE);
-
-
-  hframe=new TGHorizontalFrame(this, 800,50);
- AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
- label= new TGLabel(hframe, "Enable mask: ");
-   hframe->AddFrame(label,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   label->MapWindow();
-   label->SetTextJustify(kTextLeft);
-
-
-   eEnableMask = new TGNumberEntry(hframe, 0, 16,999, TGNumberFormat::kNESHex,
-                                               TGNumberFormat::kNEANonNegative, 
-                                               TGNumberFormat::kNELNoLimits);
-
-   hframe->AddFrame(eEnableMask,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 1, 1, 1, 1));
-   eEnableMask->MapWindow();
-   eEnableMask->Resize(150,30);
-   eEnableMask->SetState(kFALSE);
-
-}
-
-
-int ctbAdcs::setEnable(int reg) {
-
-  try {
-    if (reg > -1) {
-      myDet->setADCEnableMask(reg);
-    }
-    auto retval = myDet->getADCEnableMask().tsquash("Different values");
-    eEnableMask->SetHexNumber(retval);
-    return retval;
-  } CATCH_DISPLAY ("Could not set/get adc enablemask.", "ctbAdcs::setEnable")
-  
-  return -1;
-}
-
-int ctbAdcs::setInvert(int reg) {
-
-  try {
-    if (reg > -1) {
-      myDet->setADCInvert(reg);
-    }
-    auto retval = myDet->getADCInvert().tsquash("Different values");
-    eInversionMask->SetHexNumber(retval);
-    return retval;
-  } CATCH_DISPLAY ("Could not set/get adc enablemask.", "ctbAdcs::setEnable")
-  
-  return -1;
-}
-
-
-
-void ctbAdcs::update() {
-  Int_t invreg;
-  Int_t disreg;
-
-  disreg=setEnable();
-  invreg=setInvert();
-  
-  for (int is=0; is<NADCS; is++) {
-    sAdc[is]->setAdcAlias(NULL,-1,-1);
-    if (invreg & (1<<is) )
-      sAdc[is]->setInverted(kTRUE);
-    else
-      sAdc[is]->setInverted(kFALSE);
-
-    if (disreg & (1<<is) )
-      sAdc[is]->setEnable(kTRUE);
-    else
-      sAdc[is]->setEnable(kFALSE);
-  }
-  
-   Emit("AdcEnable(Int_t)", disreg);
-
-}
-string ctbAdcs::getAdcParameters() {
-    ostringstream line;
-  line << "reg "<< hex  << setInvert() << "# ADC invert reg" << dec << endl;
-  line << "reg "<< hex  << setEnable() << " # ADC enable reg"<< dec <<  endl;
-  return line.str();
-
-}
-
-
-void ctbAdcs::CheckAll() {
-  for (int is=0; is<NADCS; is++){
-    sAdc[is]->setPlot(kTRUE);
-  }
-}
-
-
-void ctbAdcs::RemoveAll() {
-  for (int is=0; is<NADCS; is++) {
-    sAdc[is]->setPlot(kFALSE);
-  }
-}
-
-
-
-void ctbAdcs::CheckHalf0() {
-  for (int is=0; is<NADCS/2; is++) {
-    sAdc[is]->setPlot(kTRUE);
-  }
-}
-
-
-void ctbAdcs::RemoveHalf0() {
-  for (int is=0; is<NADCS/2; is++){
-    sAdc[is]->setPlot(kFALSE);
-  }
-}
-
-void ctbAdcs::CheckHalf1() {
-  for (int is=NADCS/2; is<NADCS; is++){
-    sAdc[is]->setPlot(kTRUE);
-  }
-}
-
-
-void ctbAdcs::RemoveHalf1() {
-  for (int is=NADCS/2; is<NADCS; is++){
-    sAdc[is]->setPlot(kFALSE);
-  }
-}
-
-
-int ctbAdcs::setAdcAlias(string line) {
-
-  int is=-1, plot=0, color=-1;
-  char tit[100];
-  int narg=sscanf(line.c_str(),"ADC%d %s %d %x",&is,tit,&plot, &color);
-  if (narg<2)
-    return -1;
-  if (narg!=3)
-    color=-1;
-  if (is>=0 && is<NADCS) {
-    sAdc[is]->setAdcAlias(tit,plot,color);
-  }
-  return is;
-
-}
-
-string ctbAdcs::getAdcAlias() {
-
-  ostringstream line;
-
-  for (int is=0; is<NADCS; is++)
-    line << sAdc[is]->getAdcAlias();
-
-  return line.str();
-}
-
-
-void ctbAdcs::ToggledAdcPlot(Int_t b){
-
-  
-  Emit("ToggledAdcPlot(Int_t)", b);
-
-}
-
-void ctbAdcs::AdcEnable(Int_t b){
-   Emit("AdcEnable(Int_t)", b);
-}
-
-
-void ctbAdcs::ToggledAdcEnable(Int_t b){
-
-   Int_t oreg=setEnable();
-   Int_t m=1<<b;
-  
-   if (sAdc[b]->getEnable())
-     oreg|=m;
-   else
-     oreg&=~m;
-
-   setEnable(oreg);
-  
-   Emit("AdcEnable(Int_t)", oreg);
-}
-
-
-void ctbAdcs::ToggledAdcInvert(Int_t b){
-
-   Int_t oreg=setInvert();
-   Int_t m=1<<b;
-  
-
-   if (sAdc[b]->getInverted())
-     oreg|=m;
-   else
-     oreg&=~m;
-  
-   setInvert(oreg);
-}
-
-
-
-
-
-Pixel_t ctbAdcs::getColor(int i){
-  if (i>=0 && i<NADCS)
-    return sAdc[i]->getColor();
-  return static_cast<Pixel_t>(-1);
-}
-
-Bool_t ctbAdcs::getEnabled(int i){
-  if (i>=0 && i<NADCS)
-    return sAdc[i]->getEnabled();
-  return static_cast<Bool_t>(-1);
-}
-
-Bool_t ctbAdcs::getEnable(int i){
-  if (i>=0 && i<NADCS)
-    return sAdc[i]->getEnable();
-  return static_cast<Bool_t>(-1);
-}
-
-Bool_t ctbAdcs::getPlot(int i){
-  if (i>=0 && i<NADCS)
-    return sAdc[i]->getPlot();
-  return static_cast<Bool_t>(-1);
-}

ctbGui/ctbAdcs.h

@@ -1,157 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-
-#ifndef CTBADCS_H
-#define CTBADCS_H
-#include  <TGFrame.h>
-
-
-#define NADCS 32
-
-class TRootEmbeddedCanvas;
-class TGButtonGroup;
-class TGVerticalFrame;
-class TGHorizontalFrame;
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TH2F;
-class TGComboBox;
-class TGCheckButton;
-class TGColorSelect;
-class TColor;
-
-class   THStack;
-class   TGraphErrors;
-class  TGTextButton;
-class  TGTab;
-
-class TGraph;
-
-namespace sls
-{
-   class Detector;
-};
-
-#include <string>
-using namespace std;
-
-class ctbAdc : public TGHorizontalFrame {
-
-
- private:
-  
-
-   TGLabel *sAdcLabel;
-   TGCheckButton *sAdcEnable;
-   TGCheckButton *sAdcPlot;
-   TGCheckButton *sAdcInvert;
-
-   TGColorSelect  *fColorSel;
-
-   //  TGraph *gADC;
-
-   int id;
-   sls::Detector *myDet;
-   
- public:
-   ctbAdc(TGVerticalFrame *page, int i, sls::Detector *det);
-
-
-   void setAdcAlias(char *tit, int plot, int color);
-   string getAdcAlias();
-   void ToggledAdcPlot(Int_t b);
-   void ToggledAdcEnable(Int_t b);
-   void ToggledAdcInvert(Int_t b);
-
-
-   void ToggledPlot(Bool_t b);
-   void ToggledEnable(Bool_t b);
-   void ToggledInvert(Bool_t b);
-   void ColorChanged(Pixel_t);
-   void setEnabled(Bool_t b);
-   Bool_t getEnabled();
-   // TGraph *getGraph();
-   void update();
-
-   Pixel_t getColor();
-   
-   Bool_t getEnable();
-   void setEnable(Bool_t);
-   void setPlot(Bool_t);
-   Bool_t getInverted();
-   Bool_t getPlot();
-   void setInverted(Bool_t);
-
-   ClassDef(ctbAdc,0)
-     };
-
-
-
-class ctbAdcs : public TGGroupFrame {
-private:
-  
-  ctbAdc *sAdc[NADCS];
-   sls::Detector *myDet;
-
-   
-  TGTextButton *bCheckAll;
-  TGTextButton *bRemoveAll;
-  TGTextButton *bCheckHalf[2];
-  TGTextButton *bRemoveHalf[2];
-  TGNumberEntry *eInversionMask;
-  TGNumberEntry *eEnableMask;
-
-
-/*   TGTextButton *bPlotSelected; */
-/*   TGNumberEntry *eMinX; */
-/*   TGNumberEntry *eMaxX; */
-/*   TGNumberEntry *eMinY; */
-/*   TGNumberEntry *eMaxY; */
-  
-  
-
-/*   TGTextButton *bGetPixel; */
-/*   TGNumberEntry *ePixelX; */
-/*   TGNumberEntry *ePixelY; */
-/*   TGLabel *lPixelValue; */
-
-public:
-
-   ctbAdcs(TGVerticalFrame *page, sls::Detector *det);
-   int setAdcAlias(string line);
-   string getAdcAlias();
-   string getAdcParameters();
-   void ToggledAdcPlot(Int_t);
-   void ToggledAdcInvert(Int_t);
-   void ToggledAdcEnable(Int_t);
-   void AdcEnable(Int_t b);
-   //   TGraph *getGraph(int i);
-   void CheckAll();
-   void RemoveAll();
-   void update();
-
-   int setInvert(int reg=-1);
-   int setEnable(int reg=-1);
-
-
-   Pixel_t getColor(int i);
-   Bool_t getEnabled(int i);
-   Bool_t getPlot(int i);
-   Bool_t getEnable(int i);
-
-   void CheckHalf0();
-   void RemoveHalf0();
-   
-   void CheckHalf1();
-   void RemoveHalf1();
-   
-
-   ClassDef(ctbAdcs,0)
-};
-
-#endif
-
-

ctbGui/ctbDacs.cpp

@@ -1,235 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-
-#include <TGTextEntry.h>
-#include <TGLabel.h>
-#include <TGNumberEntry.h>
-#include <TGButton.h>
-
-#include "ctbDacs.h"
-#include "ctbDefs.h"
-#include "sls/Detector.h"
-#include "sls/sls_detector_defs.h"
-
-using namespace std;
-
-
-ctbDac::ctbDac(TGGroupFrame *page, int idac, sls::Detector *det) : TGHorizontalFrame(page, 800,50) , id(idac), myDet(det) {
-
-    TGHorizontalFrame *hframe=this;
-
-    page->AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    MapWindow();
-
-    char tit[100];
-    
-
-   sprintf(tit, "DAC %d:",idac);
-
-   dacsLabel= new TGCheckButton(hframe, tit);// new TGLabel(hframe, tit);
-   dacsLabel->SetOn(kTRUE, kTRUE);
-   
-   dacsLabel->Connect("Toggled(Bool_t)","ctbDac",this,"setOn(Bool_t)");
-
-
-   hframe->AddFrame(dacsLabel,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-   dacsLabel->MapWindow();
-   dacsLabel->SetTextJustify(kTextLeft);
-
-  
-   dacsEntry = new TGNumberEntry(hframe, 0, 9,999, TGNumberFormat::kNESInteger,
-                                               TGNumberFormat::kNEANonNegative, 
-                                               TGNumberFormat::kNELLimitMinMax,
-                                               0, 65535);
-
-  hframe->AddFrame(dacsEntry,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 5, 5, 5, 5));
-   dacsEntry->MapWindow();
-   dacsEntry->Resize(150,30);
-
-
-   dacsUnit= new TGCheckButton(hframe, "mV");
-   // if (idac!=slsDetectorDefs::ADC_VPP) {
-     hframe->AddFrame( dacsUnit,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-     dacsUnit->MapWindow();
-     if (idac==slsDetectorDefs::ADC_VPP) {
-       dacsUnit->SetEnabled(kFALSE);
-       hframe->HideFrame(dacsUnit);
-       dacsUnit->MapWindow();
-       cout << "hiding!" << endl;
-     }
-     if (idac==slsDetectorDefs::HIGH_VOLTAGE) {
-       dacsUnit->SetText("V"); 
-       dacsUnit->SetOn(kTRUE,kTRUE);
-       dacsUnit->SetEnabled(kFALSE);
-     }
-     //}
-
-
-
-   sprintf(tit, "xxx");
-   dacsValue= new TGLabel(hframe, tit);
-   hframe->AddFrame( dacsValue,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-   dacsValue->MapWindow();
-   dacsValue->SetTextJustify(kTextLeft);
-
-   TGTextEntry *e=dacsEntry->TGNumberEntry::GetNumberEntry();
-   e->Connect("ReturnPressed()","ctbDac",this,"setValue()");
-   // e->Connect("ValueSet(Long_t)","ctbDac",this,"setValue(Long_t)");
-   dacsEntry->Connect("ValueSet(Long_t)","ctbDac",this,"setValue(Long_t)");
-   //  cout << "(((((((((((((((((((((((((((((((" << dacsEntry->GetListOfSignals()->At(0)->IsA() << endl;
-   
-
-}
-
-
-
-int ctbDac::setLabel(char *tit, int mv) {
-  if(tit)
-    dacsLabel->SetText(tit);
-  if (mv==1)
-    dacsUnit->SetOn(kTRUE,kTRUE);
-  else if (mv==0)
-    dacsUnit->SetOn(kFALSE,kTRUE);
-  // else if (mv==2) {
-  //   ;}
-  // else if  (mv==3)
-  //   ; 
-  return id;
-
-}
-
-string ctbDac::getLabel() {
-  ostringstream line;
-  line << dacsLabel->GetText() << " " <<  dacsUnit->IsOn() << endl;
-   //  line << "DAC" << dec << id << " " <<  dacsUnit->IsOn() << endl;
-  return line.str();
-
-}
-
-int ctbDac::getMoenchDacId() {
-  slsDetectorDefs::dacIndex moenchDacIndices[8] = {slsDetectorDefs::VBP_COLBUF, slsDetectorDefs::VIPRE, slsDetectorDefs::VIN_CM, slsDetectorDefs::VB_SDA, slsDetectorDefs::VCASC_SFP, slsDetectorDefs::VOUT_CM, slsDetectorDefs::VIPRE_CDS, slsDetectorDefs::IBIAS_SFP}; 
-
-  if (id >= 8) {
-    return id;
-  }
-  return static_cast<int>(moenchDacIndices[id]);
-}
-
-void ctbDac::setValue(Long_t a) {setValue();}
-
-void ctbDac::setValue() {
-  cout << "setting dac! "<< id << " value " << dacsEntry->GetIntNumber() << " units " << dacsUnit->IsOn() << endl;
-
-  try {
-    int sid = id;
-    if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
-      sid = getMoenchDacId();
-    }
-    myDet->setDAC(static_cast<slsDetectorDefs::dacIndex>(sid), dacsEntry->GetIntNumber(), dacsUnit->IsOn()); 
-  } CATCH_DISPLAY ("Could not set dac " + to_string(id) + ".", "ctbDac::setValue")
-
-  getValue();
-}
-
-void ctbDac::setOn(Bool_t b) {
-  //  cout << "setting dac! "<< id << endl;
-  if ( dacsLabel->IsOn()) {
-    setValue();
-  } else {
-    try {
-      int sid = id;
-      if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
-	sid = getMoenchDacId();
-      }
-      myDet->setDAC(static_cast<slsDetectorDefs::dacIndex>(sid), -100, false);
-    } CATCH_DISPLAY ("Could not power off dac " + to_string(id) + ".", "ctbDac::setOn")
-  }
-  getValue();
-}
-
-int ctbDac::getValue() { 
-  try {
-    int sid = id;
-    if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
-      sid = getMoenchDacId();
-    }
-    int val = myDet->getDAC(static_cast<slsDetectorDefs::dacIndex>(sid), dacsUnit->IsOn()).tsquash("Different values"); 
-    cout << "dac " << id << " " << val << endl;
-    dacsValue->SetText(to_string(val).c_str());
-    if (val >= 0) {
-      dacsLabel->SetOn(kTRUE);
-    } else {
-      dacsLabel->SetOn(kFALSE);
-    }
-    return val;
-  } CATCH_DISPLAY ("Could not get dac " + to_string(id) + ".", "ctbDac::getValue")
-  
-  return -1;
-}
-
-
-ctbDacs::ctbDacs(TGVerticalFrame *page, sls::Detector *det)   : TGGroupFrame(page,"DACs",kVerticalFrame) , myDet(det){
-
-  SetTitlePos(TGGroupFrame::kLeft);
-  page->AddFrame(this,new TGLayoutHints( kLHintsTop | kLHintsExpandX , 10,10,10,10));
-  MapWindow();
-  
-  // cout << "window mapped " << endl;
-
-  for (int idac=0; idac<NDACS; idac++) {
-
-     dacs[idac]=new ctbDac(this, idac, myDet);
-
-  }
-  dacs[NDACS]=new ctbDac(this, slsDetectorDefs::ADC_VPP, myDet);
-  dacs[NDACS+1]=new ctbDac(this, slsDetectorDefs::HIGH_VOLTAGE, myDet);
-  dacs[NDACS]->setLabel((char*)"ADC Vpp",2); 
-  dacs[NDACS+1]->setLabel((char*)"High Voltage",3); 
-}
-
-
-int ctbDacs::setDacAlias(string line) {
-  int is=-1, mv=0;
-  char tit[100];
-  int narg=sscanf(line.c_str(),"DAC%d %s %d",&is,tit,&mv);
-  if (narg<2)
-    return -1;
-  if (is>=0 && is<NDACS) 
-    dacs[is]->setLabel(tit,mv);
-  return is;
-
-}
-
-string ctbDacs::getDacAlias() {
-  ostringstream line;
-
-  for (int i=0; i<NDACS; i++)
-    line << dacs[i]->getLabel() << endl;
-  return line.str();
-}
-
-
-
-
-
-string ctbDacs::getDacParameters() {
-  ostringstream line;
-
-  for (int i=0; i<NDACS; i++) {
-    //line << "dacs:" << i << " " << dacs[i]->getValue << endl;
-    line << "dac:" << i << " " << dacs[i]->getValue() << endl;
-  } 
-  return line.str();
-}
-
-
-
-void  ctbDacs::update() {
-  for (int idac=0; idac<NDACS+1; idac++) {
-    dacs[idac]->getValue();
-  }
-}

ctbGui/ctbDacs.h

@@ -1,77 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-#ifndef CTBDACS_H
-#define CTBDACS_H
-#include  <TGFrame.h>
-
-
-#define NDACS 18
-//#define NDACS 16
-
-
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TGCheckButton;
-
-
-namespace sls
-{
-   class Detector;
-};
-
-#include <string>
-using namespace std;
-
-
-class ctbDac : public TGHorizontalFrame {
-
-
- protected:
-  // TGLabel *dacsLabel;
-   TGNumberEntry *dacsEntry;
-   TGCheckButton *dacsUnit;
-   TGCheckButton *dacsLabel;
-   TGLabel *dacsValue;
-   int id;
-
-   sls::Detector* myDet;
- public:
-   ctbDac(TGGroupFrame*, int , sls::Detector*);
-   void setValue();
-   void setValue(Long_t);
-   int getValue();
-   void setOn(Bool_t);
-   
-   int setLabel(char *tit, int mv);
-   string getLabel();
-int getMoenchDacId();
-
-
-   ClassDef(ctbDac,0)
-};
-
-class ctbDacs : public TGGroupFrame {
-private:
-  
-   ctbDac *dacs[NDACS+2];
-
-   sls::Detector* myDet;
-
-public:
-   ctbDacs(TGVerticalFrame *page, sls::Detector*);
-
-   int setDacAlias(string line);
-   // int setDacAlias(string line);
-   string getDacAlias();
-   string getDacParameters();
-
-   void update();
-
-   ClassDef(ctbDacs,0)
-};
-
-#endif
-

ctbGui/ctbDefs.h

@@ -1,86 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#pragma once
-
-#include <string>
-#include <stdexcept>
-#include <chrono>
-
-//#include "sls/sls_detector_exceptions.h"
-//#include "sls/ansi.h"
-#define RED    	 	"\x1b[31m"
-#define RESET   	"\x1b[0m"
-#define BOLD    	"\x1b[1m"
-#define cprintf(code, format, ...) printf(code format RESET, ##__VA_ARGS__)
-
-
-#define CATCH_DISPLAY(m, s) catch(...) { ctbDefs::DisplayExceptions(m, s); }
-#define CATCH_HANDLE(...) catch(...) { ctbDefs::HandleExceptions(__VA_ARGS__); }
-
-class ctbDefs {
-  public:
-    /**
-     * Empty Constructor
-     */
-    ctbDefs(){};
-
-    // convert double seconds to chrono ns
-    static std::chrono::nanoseconds ConvertDoubleStoChronoNS(double timeS) {
-        using std::chrono::duration;
-        using std::chrono::duration_cast;
-        using std::chrono::nanoseconds; 
-        return duration_cast<nanoseconds>(duration<double>(timeS));
-    }
-
-    // convert chrono ns to doubel s
-    static double ConvertChronoNStoDoubleS(std::chrono::nanoseconds timeNs) {
-        using std::chrono::duration;
-        using std::chrono::duration_cast;    
-        return duration_cast<duration<double>>(timeNs).count();
-    }
-
-    static void DisplayExceptions(std::string emsg, std::string src) {
-        try {
-            throw;
-        } /* catch (const sls::SocketError &e) {
-            throw;
-        } catch (const sls::SharedMemoryError &e) {
-            throw;
-        } */catch (const std::exception &e) {
-            ExceptionMessage(emsg, e.what(), src);
-        }
-    };
-
-    template <class CT> struct NonDeduced { using type = CT; };
-    template <class S, typename RT, typename... CT>
-    static void HandleExceptions(const std::string emsg, const std::string src, S* s,
-                                    RT (S::*somefunc)(CT...),
-                                    typename NonDeduced<CT>::type... Args) {
-        try {
-            throw;
-        } /*catch (const sls::SocketError &e) {
-            throw;
-        } catch (const sls::SharedMemoryError &e) {
-            throw;
-        } */catch (const std::exception &e) {
-
-            ExceptionMessage(emsg, e.what(), src);
-            (s->*somefunc)(Args...);
-        }
-    };
-
-    static void ExceptionMessage(std::string message, 
-                    std::string exceptionMessage,
-                    std::string source) {
-        // because sls_detector_exceptions cannot be included
-      if (exceptionMessage.find("hared memory") != std::string::npos) {
-            throw;
-        }
-      if (exceptionMessage.find("annot connect") != std::string::npos) {
-            throw;
-        }
-        cprintf(RED, "Warning (%s): %s [Caught Exception: %s]\n", source.c_str(), message.c_str(), exceptionMessage.c_str());
-        //return Message(qDefs::WARNING, message + std::string("\nCaught exception:\n") + exceptionMessage, source);
-    }; 
-
-};

ctbGui/ctbGui.cpp

@@ -1,159 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#include <TApplication.h>
-#include <TColor.h>
-
-#include <TStyle.h>
-#include <TROOT.h>
-#include <stdlib.h>
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-#include <string>
-
-#include "sls/Detector.h"
-#include "sls/sls_detector_defs.h"
-//#include "sls_receiver_defs.h"
-#include "ctbMain.h"
-#include "ctbDefs.h"
-using namespace std;
-
-
-int main(int argc, char **argv) {
-
-
-  string afname, cfname, pfname;
-  int id=0;
-
-  int af=0, cf=0, pf=0;
-
-
-  cout << " *** " << argc << endl;
-  for (int ia=0; ia<argc; ia++) {
-    if (strcmp(argv[ia],"-alias")==0) {
-      if (ia+1<argc) {
-	afname=argv[ia+1];
-	ia++;
-	af=1;
-      }
-
-    } else if  (strcmp(argv[ia],"-config")==0) {
-      if (ia+1<argc) {
-	cfname=argv[ia+1];
-	ia++;
-	cf=1;
-      }
-
-
-    } else if  (strcmp(argv[ia],"-par")==0) {
-      if (ia+1<argc) {
-  pfname=argv[ia+1];
-	ia++;
-  pf=1;
-      }
-
-
-    } else if  (strcmp(argv[ia],"-id")==0) {
-      if (ia+1<argc) {
-	id=atoi(argv[ia+1]);
-	ia++;
-      }
-    } 
-  }
-  
-
-  cout << " *** "  << endl;
-  sls::Detector *myDet = nullptr;
-  try {
-    /****** Create detector ****************/
-    myDet=new sls::Detector(id);
-    cout << "Created multi detector id " << id << endl;
-
-    if (cf) {
-      myDet->loadConfig(cfname);
-      cout << "Config file loaded successfully" << endl;
-    } else {
-      cout << "No config file specified" << endl;
-    }
-    cout << "hostname " << myDet->getHostname() << endl;
-    
-    if (pf) {
-      myDet->loadParameters(pfname);
-      cout << "Loaded parameter file successfully" << endl;
-    } else{
-      cout  << "No parameter file specified" << endl;
-    }
-  } CATCH_DISPLAY ("Could not create detector/ load config/parameters.", "ctbGui::main")
-
-  /***********Create GUI stuff *******************/
-   TApplication theApp("App",&argc,argv);
-
-
- gStyle->SetDrawBorder(0);
-  gStyle->SetCanvasColor(kWhite);
-  gStyle->SetCanvasDefH(800);
-  gStyle->SetCanvasDefW(800);
-  gStyle->SetCanvasBorderMode(0);
-  gStyle->SetPadBorderMode(0);
-  gStyle->SetPaintTextFormat("5.2f");
-  gStyle->SetLineWidth(2);
-  gStyle->SetTextSize(1.1);
-  gStyle->SetLabelSize(0.04,"xy");
-  gStyle->SetTitleSize(0.05,"xy");
-  gStyle->SetTitleOffset(1.0,"x");
-  gStyle->SetTitleOffset(1.1,"y");
-  gStyle->SetPadTopMargin(0.15);
-  gStyle->SetPadRightMargin(0.15);
-  gStyle->SetPadBottomMargin(0.15);
-  gStyle->SetPadLeftMargin(0.15);
-  gStyle->SetLegendBorderSize(1);
-  gStyle->SetFrameBorderMode(0);
-  gStyle->SetFrameFillColor(kWhite);
-  // gStyle->SetLegendFillColor(kWhite);
-  gStyle->SetTitleFillColor(kWhite);
-  gStyle->SetFillColor(kWhite);
-  gStyle->SetStatFontSize(0.03);
-  gStyle->SetStatBorderSize(1);
-  gStyle->SetStatFormat("6.4g");
-  gStyle->SetStatX(0.95);
-  gStyle->SetStatY(0.95);
-  gStyle->SetStatW(0.2);
-  gStyle->SetStatH(0.2);
-  gStyle->SetTitleX(0.1);
-  gStyle->SetTitleY(0.95);
-  gStyle->SetTitleBorderSize(0);
-  gStyle->SetTitleFontSize(0.05);
-  gROOT->SetStyle("Default");
-
-
-  TColor::InitializeColors();
-  const Int_t NRGBs = 5;
-  const Int_t NCont = 90;
-
-  Double_t stops[NRGBs] = { 0.00, 0.34, 0.61, 0.84, 1.00 };
-  Double_t red[NRGBs]   = { 0.00, 0.00, 0.87, 1.00, 0.51 };
-  Double_t green[NRGBs] = { 0.00, 0.81, 1.00, 0.20, 0.00 };
-  Double_t blue[NRGBs]  = { 0.51, 1.00, 0.12, 0.00, 0.00 };
-  TColor::CreateGradientColorTable(NRGBs, stops, red, green, blue, NCont);
-  gStyle->SetNumberContours(NCont);
-
-
-  gROOT->ForceStyle();
-  ctbMain *mf=new ctbMain(gClient->GetRoot(), myDet);
-
-  cout << " *** " << argc << endl;
-  for (int ia=0; ia<argc; ia++)
-    cout << argv[ia] << endl;
-  
-
-  cout << " *** "  << endl;
-  
-  if (af)
-    mf->loadAlias(afname);
-  else
-    cout << "no alias specified" << endl;
-
-   theApp.Run();
-
-   return 0;
-}

ctbGui/ctbLinkDef.h

@@ -1,17 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#pragma link C++ class ctbMain;
-#pragma link C++ class ctbDacs;
-#pragma link C++ class ctbDac;
-#pragma link C++ class ctbSignals;
-#pragma link C++ class ctbSignal;
-#pragma link C++ class ctbAdc;
-#pragma link C++ class ctbAdcs;
-#pragma link C++ class ctbLoop;
-#pragma link C++ class ctbWait;
-#pragma link C++ class ctbPattern;
-#pragma link C++ class ctbAcquisition;
-#pragma link C++ class ctbPower;
-#pragma link C++ class ctbPowers;
-#pragma link C++ class ctbSlowAdc;
-#pragma link C++ class ctbSlowAdcs;

ctbGui/ctbMain.cpp

@@ -1,588 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#include <TApplication.h>
-#include <TGClient.h>
-#include <TCanvas.h>
-#include <TF1.h>
-#include <TRandom.h>
-#include <TGButton.h>
-#include <TRootEmbeddedCanvas.h>
-#include <TGButtonGroup.h>
-#include <TGNumberEntry.h>
-#include <TGLabel.h>
-#include <TList.h>
-#include <TGFileDialog.h>
-#include <TGComboBox.h>
-#include <TH2F.h>
-#include <TColor.h>
-#include <TH1F.h>
-#include <TGraphErrors.h>
-#include <THStack.h>
-#include <TGTab.h>
-#include <TApplication.h>
-#include <TGCanvas.h>
-#include <stdlib.h>
-
-#include <TGMenu.h>
-#include <TGDockableFrame.h>
-//#include <TGMenuBar.h>
-//#include <TGPopupMenu.h>
-
-
-
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-#include <string>
-
-#include "sls/Detector.h"
-#include "ctbDefs.h"
-#include "ctbMain.h"
-#include "ctbDacs.h"
-#include "ctbSlowAdcs.h"
-#include "ctbPowers.h"
-#include "ctbSignals.h"
-#include "ctbPattern.h"
-#include "ctbAdcs.h"
-#include "ctbAcquisition.h"
-//#include "ctbActions.h"
-
-using namespace std;
-
-
-
-ctbMain::ctbMain(const TGWindow *p, sls::Detector *det)
-  : TGMainFrame(p,800,800), pwrs(NULL), senses(NULL) {
-
-  myDet=det;
-
-  Connect("CloseWindow()", "ctbMain", this, "CloseWindow()");
-
-
-
-
-
-//   fMenuDock = new TGDockableFrame(this);
-//   AddFrame(fMenuDock, new TGLayoutHints(kLHintsExpandX, 0, 0, 1, 0));
-//   fMenuDock->SetWindowName("GuiTest Menu");
-
-  fMenuBarLayout = new TGLayoutHints(kLHintsTop | kLHintsExpandX);
-  fMenuBarItemLayout = new TGLayoutHints(kLHintsTop | kLHintsLeft, 0, 4, 0, 0);
-  fMenuBarHelpLayout = new TGLayoutHints(kLHintsTop | kLHintsRight);
-
-  fMenuFile = new TGPopupMenu(gClient->GetRoot());
-  int im=0;
-
-   fMenuFile->AddEntry("Open Alias", im++);
-   fMenuFile->AddEntry("Save Alias", im++);
-   fMenuFile->AddSeparator();
-   fMenuFile->AddEntry("Open Parameters", im++);
-   fMenuFile->AddEntry("Save Parameters", im++);
-   fMenuFile->AddSeparator();
-   fMenuFile->AddEntry("Open Configuration", im++);
-   fMenuFile->AddEntry("Save Configuration", im++);
-   fMenuFile->AddSeparator();
-   fMenuFile->AddEntry("Open Pattern", im++);
-   fMenuFile->AddEntry("Save Pattern", im++);
-   fMenuFile->AddSeparator();
-   fMenuFile->AddEntry("Exit", im++);
-
-    fMenuFile->Connect("Activated(Int_t)", "ctbMain", this,
-                       "HandleMenu(Int_t)");
- 
-
-    i_dacs=-1;
-    i_pwrs=-1;
-    i_senses=-1;
-    i_sig=-1;
-    i_adcs=-1;
-    i_pat=-1;
-    i_acq=-1;
-
-    int i_page=0;
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-  TGVerticalFrame *vframe=new TGVerticalFrame(this, 800,1200); //main frame
-
-
-
-   fMenuBar = new TGMenuBar(vframe, 1, 1, kHorizontalFrame);
-   fMenuBar->AddPopup("&File", fMenuFile, fMenuBarItemLayout);
-//    fMenuBar->AddPopup("&Test", fMenuTest, fMenuBarItemLayout);
-//    fMenuBar->AddPopup("&View", fMenuView, fMenuBarItemLayout);
-//    fMenuBar->AddPopup("&Help", fMenuHelp, fMenuBarHelpLayout);
-
-   vframe->AddFrame(fMenuBar, fMenuBarLayout);
-
-  TGHorizontalFrame* hpage=new TGHorizontalFrame(vframe, 800,1200); //horizontal frame. Inside there should be the tab and the canvas
-  mtab=new TGTab(hpage, 1500, 1200); //tab!
-  //  page=new TGVerticalFrame(mtab, 1500,1200);
-
-  cout << "DACS" << endl;
-
-  TGCompositeFrame *tf = mtab->AddTab("DACs");
-  TGVerticalFrame *page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  dacs=new ctbDacs(page, myDet);
-  i_dacs=i_page++;
-  
-
-  cout << "power " << endl;
-  tf = mtab->AddTab("Power Supplies");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  pwrs=new ctbPowers(page, myDet);
-
-  i_pwrs=i_page++;
-
-  cout << "sense " << endl;
-  tf = mtab->AddTab("Sense");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  senses=new ctbSlowAdcs(page, myDet);
-
-  i_senses=i_page++;
-
-
- 
-  cout << "signals " << endl;
-  tf = mtab->AddTab("Signals");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  sig=new ctbSignals(page, myDet);
-  sig->Connect("ToggledSignalPlot(Int_t)","ctbMain",this,"setSignalPlot(Int_t)");
-
-  i_sig=i_page++;
-
-  cout << "adcs " << endl;
-  tf = mtab->AddTab("ADCs");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  adcs=new ctbAdcs(page, myDet);
-  adcs->Connect("ToggledAdcPlot(Int_t)","ctbMain",this,"setADCPlot(Int_t)");
-  adcs->Connect("AdcEnable(Int_t)","ctbMain",this,"setADCEnable(Int_t)");
-  i_adcs=i_page++;
-
-
-  cout << "pattern" << endl;
-
-  tf = mtab->AddTab("Pattern");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  pat=new ctbPattern(page, myDet);
-  pat->Connect("patternFileChanged(const char*)","ctbMain",this,"setPatternFile(const char*)");
-  pat->Connect("patternCompilerChanged(const char*)","ctbMain",this,"setPatternCompiler(const char*)");
-  pat->Connect("analogSamplesChanged(const int)","ctbMain",this,"setAnalogSamples(int)");
-  pat->Connect("digitalSamplesChanged(const int)","ctbMain",this,"setDigitalSamples(int)");
-  pat->Connect("readoutModeChanged(int)","ctbMain",this,"setReadoutMode(int)");
-
-  i_pat=i_page++;
-
-  cout << "acquisition" << endl;
-
-  tf = mtab->AddTab("Acquisition");
-  page=new TGVerticalFrame(tf, 1500,1200);
-  tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  acq=new ctbAcquisition(page, myDet);
-
-
-  i_acq=i_page++;
-
-
-  // cout << "actions" << endl;
-  // tf = mtab->AddTab("Actions");
-  // page=new TGVerticalFrame(tf, 1500,1200);
-  // tf->AddFrame(page, new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  // actions=new ctbActions(page, myDet);
-
-
-  // i_actions=i_page++;
-
-
-
-   cout << "tabs finished" << endl;
-
-  hpage->AddFrame(mtab,new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-
-  vframe->AddFrame(hpage,new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  
-  AddFrame(vframe,new TGLayoutHints(kLHintsExpandX | kLHintsExpandY, 10,10,10,1));
-  vframe->MapWindow();
-  hpage->MapWindow();
-  mtab->MapWindow();
-  page->MapWindow();
-
-  // Sets window name and shows the main frame
-   cout << "dockabel" << endl;
-   TGDockableFrame *fdock=new TGDockableFrame(hpage);
-   hpage->AddFrame(fdock, new TGLayoutHints(kLHintsBottom | kLHintsCenterX | kLHintsExpandX | kLHintsExpandY, 10,10,10,10));
-   fdock->MapWindow();
-
-   cout << "canvas" << endl;
-//    // Creates widgets of the example
-
-
-   fEcanvas = new TRootEmbeddedCanvas ("Ecanvas",fdock,800,800);//hpage,800,800);
-   //fEcanvas = new TRootEmbeddedCanvas ("Ecanvas",this,800,800);//hpage,800,800);
-  // fEcanvas->Resize();
-  //  fEcanvas->GetCanvas()->Update();
-  //AddFrame(fEcanvas, new TGLayoutHints(kLHintsBottom | kLHintsCenterX | kLHintsExpandX | kLHintsExpandY, 10,10,10,10));
-
-  // // hpage->
-  fdock->AddFrame(fEcanvas, new TGLayoutHints(kLHintsBottom | kLHintsCenterX | kLHintsExpandX | kLHintsExpandY, 10,10,10,10));
-
-
-  fEcanvas->MapWindow();
-
-  acq->setCanvas(getCanvas());
-
-
-
-  hpage->MapSubwindows();
-   mtab->Connect("Selected(Int_t)","ctbMain",this,"tabSelected(Int_t)");
-
-
-
-   cout << "connect mtab" << endl;
-
-  try{  
-   setReadoutMode(pat->getReadoutMode());  
-  } CATCH_DISPLAY ("Could not get readout flags", "ctbPattern::getReadoutMode")
-
-   setADCEnable(adcs->setEnable());
-   setAnalogSamples(pat->getAnalogSamples());
-   setDigitalSamples(pat->getDigitalSamples());
-   
-   tabSelected(0);
-
-   SetWindowName("CTB Gui");
-   MapSubwindows();
-   Resize(1500,1200);
-
-   MapWindow();
-}
-
-void ctbMain::CloseWindow() {
-   gApplication->Terminate();
-}
-
-TCanvas* ctbMain::getCanvas() {
-  return fEcanvas->GetCanvas();
-}
-
-
-
-void ctbMain::HandleMenu(Int_t id)
-{
-   // Handle menu items.
-   
-  
- 
-
-   switch (id) {
-
-   case 0:   // fMenuFile->AddEntry("Open Alias", im++);
-     cout << "Open Alias" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDOpen, &fi);
-             printf("Open file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       loadAlias(fi.fFilename);
-          }
-         break;
-
-   case 1: // fMenuFile->AddEntry("Save Alias", im++);
-     cout << "Save Alias" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDSave, &fi);
-             printf("Save file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       saveAlias(fi.fFilename);
-          }
-         break;
-   case 2: //fMenuFile->AddEntry("Open Parameters", im++);
-     cout << "Open Parameters" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDOpen, &fi);
-             printf("Open file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       loadParameters(fi.fFilename);
-          }
-         break;
-
-   case 3: // fMenuFile->AddEntry("Open Configuration", im++);
-     cout << "Open configuration" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDOpen, &fi);
-             printf("Open file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       loadConfiguration(fi.fFilename);
-          }
-         break;
- 
-   case 4: //fMenuFile->AddEntry("Open Pattern", im++);
-     cout << "Open pattern" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDOpen, &fi);
-             printf("Open file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       loadParameters(fi.fFilename);
-          }
-     break;
-
-   case 5:   //fMenuFile->AddEntry("Save Pattern", im++);
-     cout << "Save pattern" << endl;
-         {
-             static TString dir(".");
-             TGFileInfo fi;
-             //fi.fFileTypes = filetypes;
-             fi.fIniDir    = StrDup(dir);
-             printf("fIniDir = %s\n", fi.fIniDir);
-             new TGFileDialog(gClient->GetRoot(), this, kFDSave, &fi);
-             printf("Open file: %s (dir: %s)\n", fi.fFilename, fi.fIniDir);
-	     // dir = fi.fIniDir;
-	     if (fi.fFilename)
-	       savePattern(fi.fFilename);
-          }
-         break;
-
-   case 6: //  fMenuFile->AddEntry("Exit", im++);
-     CloseWindow();
-
-      default:
-         printf("Menu item %d selected\n", id);
-         break;
-   }
-}
-
-
-
-int  ctbMain::setADCPlot(Int_t i) {
-
-  //  cout << "ADC " << i << " plot or color toggled" << endl;
-  //  acq->setGraph(i,adcs->getGraph(i));
-  acq->setGraph(i,adcs->getEnabled(i),adcs->getColor(i));
-  return -1;
-}
-
-
-int  ctbMain::setSignalPlot(Int_t i) {
-
-  //  cout << "ADC " << i << " plot or color toggled" << endl;
-  //  acq->setGraph(i,adcs->getGraph(i));
-  acq->setBitGraph(i,sig->getPlot(i),sig->getColor(i));
-  return -1;
-}
-
-
-
-void  ctbMain::loadConfiguration(string fname) {
-  try{
-    myDet->loadConfig(fname);
-  } CATCH_DISPLAY ("Could not load config.", "ctbMain::loadConfiguration")
-}
-
-void  ctbMain::loadParameters(string fname) {
-  try{
-    myDet->loadParameters(fname);
-  } CATCH_DISPLAY ("Could not load parameters.", "ctbMain::loadParameters")
-}
-
-void  ctbMain::savePattern(string fname) {
-  try{
-    myDet->savePattern(fname);
-  } CATCH_DISPLAY ("Could not save pattern.", "ctbMain::savePattern")
-}
-
-
-
-int  ctbMain::loadAlias(string fname) {
-
-
-  string line;
-  char aaaa[1000];
-  int i;
-  ifstream myfile (fname.c_str());
-  if (myfile.is_open())
-  {
-    while ( getline (myfile,line) )
-    {
-      // cout << line ;
-      if (sscanf(line.c_str(),"BIT%d",&i)>0) {
-	//cout << "*******" << line<< endl;
-	sig->setSignalAlias(line);
-      // cout << line ;
-      } else if (sscanf(line.c_str(),"DAC%d",&i)>0) {
-	dacs->setDacAlias(line);
-	//	cout << "+++++++++" << line<< endl;
-      } else if (sscanf(line.c_str(),"ADC%d",&i)>0) {
-	adcs->setAdcAlias(line);
-	//	cout << "---------" << line<< endl;
-      }      //  else
-      //	cout << "<<<<<<<" << line << endl;
-      else if (sscanf(line.c_str(),"PAT%s",aaaa)>0) {
-	pat->setPatternAlias(line);
-	//	cout << "---------" << line<< endl;
-      }	else if (sscanf(line.c_str(),"V%s",aaaa)>0) {
-	    if (pwrs)	pwrs->setPwrAlias(line);
-	//	cout << "+++++++++" << line<< endl;
-      } else if (sscanf(line.c_str(),"SENSE%d",&i)>0) {
-	if (senses) senses->setSlowAdcAlias(line);
-	//	cout << "+++++++++" << line<< endl;
-      } 
-      
-    }
-    myfile.close();
-  }
-
-  else cout << "Unable to open file"; 
-
-  return 0;
-
-}
-
-
-
-
-
-int  ctbMain::saveAlias(string fname) {
-
-
-  string line;
-  ofstream myfile (fname.c_str());
-  if (myfile.is_open())
-  {
-    //while ( getline (myfile,line) )
-    // {
-      // cout << line ;
-      //if (sscanf(line.c_str(),"BIT%d",&i)>0) {
-	//cout << "*******" << line<< endl;
-    myfile << sig->getSignalAlias();
-      // cout << line ;
-    //  } else if (sscanf(line.c_str(),"DAC%d",&i)>0) {
-    myfile << dacs->getDacAlias();
-    if (pwrs) myfile << pwrs->getPwrAlias();
-    if (senses) myfile << senses->getSlowAdcAlias();
-	//	cout << "+++++++++" << line<< endl;
-    //  } else if (sscanf(line.c_str(),"ADC%d",&i)>0) {
-    myfile << adcs->getAdcAlias();
-	//	cout << "---------" << line<< endl;
-    //  }      //  else
-      //	cout << "<<<<<<<" << line << endl;
-    myfile << pat->getPatternAlias();
-      
-    //}
-    myfile.close();
-  }
-
-  else cout << "Unable to open file"; 
-
-  return 0;
-
-}
-
-
-
-
-
-
-
-
-
-
-
-void ctbMain::tabSelected(Int_t i) {
-
-  //  cout << "Selected tab " << i << endl;
-  // cout << "Current tab is " <<  mtab->GetCurrent() << endl;
-
-  if (i==i_dacs) dacs->update();
-  else if (i==i_pwrs) pwrs->update();
-  else if (i==i_senses) ;//senses->update();
- else if (i==i_sig) sig->update();
- else if (i==i_adcs) adcs->update();
- else if (i==i_pat) pat->update();
- else if (i==i_acq) acq->update();
- else if (i==i_acq) acq->update();
-  // else if (i==i_actions) actions->update();
- else cout << "Unknown tab " << i << endl;
- 
-
-}
-
-void ctbMain::setPatternFile(const char* t) {
-  acq->setPatternFile(t);
-
-}
-
-void ctbMain::setPatternCompiler(const char* t) {
-  acq->setPatternCompiler(t);
-
-
-}
-
-void ctbMain::setAnalogSamples(const int n) {
-  acq->setAnalogSamples(n);
-
-
-}
-
-void ctbMain::setDigitalSamples(const int n) {
-  acq->setDigitalSamples(n);
-
-
-}
-
-void ctbMain::setReadoutMode(int flags) {
-  acq->setReadoutMode(flags);
-}
-
-void ctbMain::setADCEnable(Int_t reg){
-  acq->setADCEnable(reg);
-}

ctbGui/ctbMain.h

@@ -1,130 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef CTBMAIN_H
-#define CTBMAIN_H
-#include <TGFrame.h>
-
-
-class TRootEmbeddedCanvas;
-class TGButtonGroup;
-class TGVerticalFrame;
-class TGHorizontalFrame;
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TH2F;
-class TGComboBox;
-class TGCheckButton;
-
-class   THStack;
-class   TGraphErrors;
-class  TGTextButton;
-class  TGTab;
-
-class   TGMenuBar;
-class   TGPopupMenu;
-class   TGDockableFrame;
-class TGLayoutHints;
-class TGCanvas;
-class TCanvas;
-
-class   ctbDacs;
-class   ctbSlowAdcs;
-class   ctbPowers;
-
- 
-class  ctbSignals;
-
-namespace sls
-{
-   class Detector;
-};
-
-class  ctbPattern;
-class  ctbAdcs;
-class  ctbAcquisition;
-//class  ctbActions;
-
-#include <string>
-using namespace std;
-
-class ctbMain : public TGMainFrame { 
-private:
-
-
-  sls::Detector *myDet;
-
-
-
-   TRootEmbeddedCanvas *fEcanvas;
-   TRootEmbeddedCanvas *fModulecanvas;
-   TGButtonGroup *br;
-   
-   TGTab *mtab;
-
-   
-   ctbDacs *dacs;
-   int i_dacs;
-
-   ctbPowers *pwrs;
-   int i_pwrs;
-
-   ctbSlowAdcs *senses;
-   int i_senses;
-
- 
-  ctbSignals *sig;
-  int i_sig;
-
-
-  ctbAdcs *adcs;
-  int i_adcs;
-  
-
-  ctbPattern *pat;
-  int i_pat;
-
-  ctbAcquisition *acq;
-  int i_acq;
-
-  // ctbActions *actions;
-  int i_actions;
-
-   TGDockableFrame    *fMenuDock;
-
-   TGMenuBar          *fMenuBar;
-   TGPopupMenu        *fMenuFile, *fMenuTest, *fMenuView, *fMenuHelp;
-   TGPopupMenu        *fCascadeMenu, *fCascade1Menu, *fCascade2Menu;
-   TGPopupMenu        *fMenuNew1, *fMenuNew2;
-   TGLayoutHints      *fMenuBarLayout, *fMenuBarItemLayout, *fMenuBarHelpLayout;
-   TGCanvas *myCanvas;
-
-
-public:
-   ctbMain(const TGWindow *p, sls::Detector *det);
-
-
-   int  loadAlias(string fname);
-   int  saveAlias(string fname);
-   void  loadParameters(string fname);
-   void  savePattern(string fname);
-   void  loadConfiguration(string fname);
-   void tabSelected(Int_t);
-   int setADCPlot(Int_t);
-   int setSignalPlot(Int_t);
-   void CloseWindow();
-
-   void setPatternFile(const char* t);
-
-   void setPatternCompiler(const char* t);
-   void setAnalogSamples(const int);
-   void setDigitalSamples(const int);
-   void setReadoutMode(int);
-   void setADCEnable(Int_t);
-
-   void HandleMenu(Int_t);
-   TCanvas* getCanvas();
-   ClassDef(ctbMain,0)
-};
-
-#endif

ctbGui/ctbPattern.h

@@ -1,181 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef CTBPATTERN_H
-#define CTBPATTERN_H
-#include  <TGFrame.h>
-
-
-#define NLOOPS 3
-#define NWAITS 3
-#define NADCS 32
-#define PATLEN 1024
-
-class TRootEmbeddedCanvas;
-class TGButtonGroup;
-class TGVerticalFrame;
-class TGHorizontalFrame;
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TH2F;
-class TGComboBox;
-class TGCheckButton;
-class TGTextEntry;
-class TGCheckButton;
-
-class   THStack;
-class   TGraphErrors;
-class energyCalibration;
-class  TGTextButton;
-class  TGTab;
-
-namespace sls
-{
-   class Detector;
-};
-
-
-#include <string>
-using namespace std;
-
-
-
-class ctbLoop : public TGHorizontalFrame {
- 
-
- private:
-
-   TGNumberEntry *eLoopStartAddr; 
-   TGNumberEntry *eLoopStopAddr; 
-   TGNumberEntry *eLoopNumber; 
-
-   int id;
-
-   sls::Detector *myDet;
-
- public:
-   ctbLoop(TGGroupFrame *page, int i,sls::Detector *det);
-   
-   void setNLoops();
-   void update();
-
-   ClassDef(ctbLoop,0)
-     };
-
-class ctbWait : public TGHorizontalFrame {
- 
-
- private:
-
-   TGNumberEntry *eWaitAddr; 
-   TGNumberEntry *eWaitTime; 
-
-   int id;
-
-   sls::Detector *myDet;
-
- public:
-   ctbWait(TGGroupFrame *page, int i,sls::Detector *det);
-   
-   void setWaitTime();
-   void update();
-
-   ClassDef(ctbWait,0)
-     };
-
-
-
-
-
-
-
-class ctbPattern : public TGGroupFrame {
-private:
-   
-
-   TGNumberEntry *eAdcClkFreq;
-   TGNumberEntry *eRunClkFreq;
-   TGNumberEntry *eDBitClkFreq;
-   TGNumberEntry *eAdcClkPhase;
-   TGNumberEntry *eDBitClkPhase;
-   //TGNumberEntry *eRunClkPhase;
-
-   TGNumberEntry *eStartAddr;
-   TGNumberEntry *eStopAddr;
-   TGNumberEntry *eFrames;
-   TGNumberEntry *ePeriod;
-   TGNumberEntry *eTriggers;
-   // TGNumberEntry *eMeasurements;
-   TGNumberEntry *eAdcPipeline;
-   TGNumberEntry *eDBitPipeline;
-   
-   ctbLoop *eLoop[NLOOPS];
-   ctbWait *eWait[NWAITS];
-
-   TGTextEntry *patternCompiler;
-   TGTextEntry *patternFile;
-   
-   TGTextButton *browseCompiler;
-   TGTextButton *browseFile;
-   
-
-   TGNumberEntry *eAnalogSamples;
-   TGNumberEntry *eDigitalSamples;
-
-  TGCheckButton *cbAnalog;
-  TGCheckButton *cbDigital;
-  
-   char pat[PATLEN*8];
-
-   sls::Detector *myDet;
-
-public:
-
-   ctbPattern(TGVerticalFrame *page, sls::Detector *det);
-
-   void update();
-   void setAdcFreq();
-   void setRunFreq();
-   void setDBitFreq();
-   void setAdcPhase();
-   void setDBitPhase();
-   // void setRunPhase();
-   void setAdcPipeline();
-   void setDBitPipeline();
-   void setFrames();
-   void setTriggers();
-   // void setMeasurements();
-   void setPeriod();
-
-   
-   void chooseCompiler();
-   void choosePattern();
-
-   string getCompiler();
-   string getPatternFile();
-   
-   void setPatternAlias(string);
-   string getPatternAlias();
-
-
-   int getAnalogSamples();
-   void  setAnalogSamples();
-   int getDigitalSamples();
-   void  setDigitalSamples();
-   void  setReadoutMode(Bool_t);
-   int  getReadoutMode();
-
-
-   void setFile();
-   void setCompiler();
-   void patternFileChanged(const char*);
-   void patternCompilerChanged(const char*);
-   void analogSamplesChanged(const int t);
-   void digitalSamplesChanged(const int t);
-   void readoutModeChanged(int);
-
-
-   ClassDef(ctbPattern,0)
-};
-
-#endif

ctbGui/ctbPowers.cpp

@@ -1,225 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#include  <TGFrame.h>
-
-
-#include <TGButtonGroup.h>
-#include <TGNumberEntry.h>
-#include <TGLabel.h>
-#include <TList.h>
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-
-#include "ctbDefs.h"
-#include "ctbDacs.h"
-#include "ctbPowers.h"
-#include "sls/Detector.h"
-#include "sls/sls_detector_defs.h"
-
-using namespace std;
-
-
-
-ctbPower::ctbPower(TGGroupFrame* f, int i,  sls::Detector* d)
-  : ctbDac(f, i, d) 
-{
-  cout << "****************************************************************power " << i << endl;
-     dacsUnit->SetOn(kTRUE); 
-     dacsUnit->SetEnabled(kFALSE);
-
-     switch(i) {
-     case slsDetectorDefs::V_POWER_IO: 
-     	 dacsLabel->SetText("VIO"); 
-     	 break; 
-     case slsDetectorDefs::V_POWER_A: 
-     	 dacsLabel->SetText("VA"); 
-     	 break;  
-     case slsDetectorDefs::V_POWER_B: 
-     	 dacsLabel->SetText("VB"); 
-     	 break;   
-     case slsDetectorDefs::V_POWER_C: 
-     	 dacsLabel->SetText("VC");
-     	 break;    
-     case slsDetectorDefs::V_POWER_D: 
-     	 dacsLabel->SetText("VD");
-     	 break;      
-     case slsDetectorDefs::V_POWER_CHIP: 
-     	 dacsLabel->SetText("VCHIP"); 
-     	 dacsLabel->SetEnabled(kFALSE);
-     	 break;    
-     default: 
-     	 dacsLabel->SetText("Bad index"); 
-     	 break; 
-     };
-     
-
-     TGTextEntry *e=dacsEntry->TGNumberEntry::GetNumberEntry();
-     e->Disconnect 	("ReturnPressed()");
-     e->Disconnect 	("ValueSet(Long_t)");
-     
-     e->Connect("ReturnPressed()","ctbPower",this,"setValue()");
-     dacsEntry->Connect("ValueSet(Long_t)","ctbPower",this,"setValue(Long_t)");
- };
-
-
-string ctbPower::getLabel() {
-
-  ostringstream line;
-  switch (id) {
-     case slsDetectorDefs::V_POWER_IO: 
-	 line << "VIO"; 
-	 break; 
-     case slsDetectorDefs::V_POWER_A: 
-	 line << "VA"; 
-	 break;  
-     case slsDetectorDefs::V_POWER_B: 
-	 line << "VB"; 
-	 break;   
-     case slsDetectorDefs::V_POWER_C: 
-	 line << "VC"; 
-	 break;    
-     case slsDetectorDefs::V_POWER_D: 
-	 line << "VD"; 
-	 break;      
-     case slsDetectorDefs::V_POWER_CHIP: 
-	 line << "VCHIP"; 
-	 break;    
-     default:  
-	 line << "VBAD"; 
-	 break; 
-
-  }
-  line << " " <<  dacsLabel->GetText() << endl;
-  return line.str();
-}
-
-void ctbPower::setValue(Long_t a) {ctbPower::setValue();}
-
-void ctbPower::setValue() {
-  cout << "***************************Setting power " << dacsEntry->GetIntNumber() << " " << id << " " << 1 << endl;
- 
-  try {
-    myDet->setVoltage(static_cast<slsDetectorDefs::dacIndex>(id), dacsEntry->GetIntNumber());
-  } CATCH_DISPLAY ("Could not set power " + to_string(id) + ".", "ctbPower::setValue")
-
-  getValue();
-}
-
-
-int ctbPower::getValue() {
-  try {
-
-  int val = myDet->getVoltage(static_cast<slsDetectorDefs::dacIndex>(id)).tsquash("Different values");
-  cout << "****************************Getting power " << val << " " << id << " " << 1 << endl;
-
-  dacsValue->SetText(to_string(val).c_str());
-  if (val > 0) {
-    if (id != static_cast<int>(slsDetectorDefs::V_POWER_CHIP))
-      dacsLabel->SetOn(kTRUE);
-  } else {
-    dacsLabel->SetOn(kFALSE);
-  }
-
-  return val;
-
-  } CATCH_DISPLAY ("Could not get power " + to_string(id) + ".", "ctbPower::getValue") 
-
-  return -1;
-}
-
-
-
-ctbPowers::ctbPowers(TGVerticalFrame* page, sls::Detector* det)   : TGGroupFrame(page,"Power Supplies",kVerticalFrame) , myDet(det){
-
-
-  SetTitlePos(TGGroupFrame::kLeft);
-  page->AddFrame(this,new TGLayoutHints( kLHintsTop | kLHintsExpandX , 10,10,10,10));
-  MapWindow();
-  
-  // cout << "window mapped " << endl;
-
-  for (int idac=0; idac<NPOWERS; idac++) {
-     dacs[idac]=new ctbPower(this, slsDetectorDefs::V_POWER_A+idac, myDet);
-
-  }
-}
-
-
-int ctbPowers::setPwrAlias(string line) {
-
-  int is=-1;
-  char tit[100];
-
-  if (sscanf(line.c_str(),"VA %s",tit)) {
-    dacs[0]->setLabel(tit,1);
-    is=0;
-  }
-
-  if (sscanf(line.c_str(),"VB %s",tit)) {
-    dacs[1]->setLabel(tit,1);
-    is=1;
-  }
-
-  if (sscanf(line.c_str(),"VC %s",tit)) {
-    dacs[2]->setLabel(tit,1);
-    is=2;
-  }
-
-  if (sscanf(line.c_str(),"VD %s",tit)) {
-    dacs[3]->setLabel(tit,1);
-    is=3;
-  }
-
-  if (sscanf(line.c_str(),"VIO %s",tit)) {
-    dacs[4]->setLabel(tit,1);
-    is=4;
-  }
-
-  if (sscanf(line.c_str(),"VCHIP %s",tit)) {
-    dacs[5]->setLabel(tit,1);
-    is=5;
-  }
-    
-  return is;
-
-}
-
-string ctbPowers::getPwrAlias() {
-
-  ostringstream line;
-
-  for (int i=0; i<NPOWERS; i++)
-    line << dacs[i]->getLabel() << endl;
-  return line.str();
-
-}
-
-
-
-
-string ctbPowers::getPwrParameters() {
-
-  ostringstream line;
-  line << "v_a" << " " << dacs[0]->getValue() << " mv" << endl;
-  line << "v_b" << " " << dacs[1]->getValue() << " mv" << endl;
-  line << "v_c" << " " << dacs[2]->getValue() << " mv" << endl;
-  line << "v_d" << " " << dacs[3]->getValue() << " mv" << endl;
-  line << "v_io" << " " << dacs[4]->getValue() << " mv" << endl;
-  line << "v_chip" << " " << dacs[5]->getValue() << " mv" << endl;
-  // for (int i=0; i<POWERS; i++) {
-  //   //line << "dacs:" << i << " " << dacs[i]->getValue << endl;
-  //   line << "dac:" << i << " " << dacs[i]->getValue() << endl;
-  // } 
-  return line.str();
-}
-
-
-
-void  ctbPowers::update() {
-  for (int idac=0; idac<NPOWERS; idac++) {
-    dacs[idac]->getValue();
-
-  }
-}

ctbGui/ctbPowers.h

@@ -1,69 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef CTBPOWERS_H
-#define CTBPOWERS_H
-
-#include  <TGFrame.h>
-
-#define NPOWERS 6
-
-
-
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TGCheckButton;
-
-
-
-
-namespace sls
-{
-   class Detector;
-};
-
-#include <string>
-using namespace std;
-
-
-class ctbPower : public ctbDac {
-
-  
-
-
- public:
-
-  ctbPower(TGGroupFrame* f, int i, sls::Detector* d);
-
-    string getLabel();
-
-    int getValue();
-    void setValue();
-    void setValue(Long_t);
-
-   ClassDef(ctbPower,0)
-};
-
-
-class ctbPowers : public TGGroupFrame 
-{
- private:
-  
-   ctbPower *dacs[NPOWERS]; 
-
-   sls::Detector* myDet; 
-
-public:
-   //ctbPowers();
-    ctbPowers(TGVerticalFrame*, sls::Detector*);
-
-    int setPwrAlias(string); 
-    string getPwrAlias(); 
-    string getPwrParameters(); 
-
-    void update(); 
-
-    ClassDef(ctbPowers,0)
-};
-
-#endif

ctbGui/ctbSignals.cpp

@@ -1,543 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#include <TApplication.h>
-#include <TGClient.h>
-#include <TCanvas.h>
-#include <TF1.h>
-#include <TRandom.h>
-#include <TGButton.h>
-#include <TRootEmbeddedCanvas.h>
-#include <TGButtonGroup.h>
-#include <TGNumberEntry.h>
-#include <TGLabel.h>
-#include <TList.h>
-#include <TGFileDialog.h>
-#include <TGComboBox.h>
-#include <TH2F.h>
-#include <TColor.h>
-#include <TH1F.h>
-#include <TGraphErrors.h>
-#include <THStack.h>
-#include <TGTab.h>
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-#include <TGButton.h>
-#include <TRootEmbeddedCanvas.h>
-#include <TGButtonGroup.h>
-#include <TGNumberEntry.h>
-#include <TGLabel.h>
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-#include <TColor.h>
-#include <TGColorSelect.h>
-
-
-#include "ctbSignals.h"
-#include "ctbDefs.h"
-#include "sls/Detector.h"
-
-using namespace std;
-
-
-
-//#define DEFAULTFN "run_0.encal"
-
-
-ctbSignal::ctbSignal(TGFrame *page, int i,  sls::Detector *det)
-  : TGHorizontalFrame(page, 800,50), myDet(det), id(i), hsig(NULL) {
-
-
-  TGHorizontalFrame *hframe=this;
-  char tit[100];
-
-
-   
-   sprintf(tit, "BIT%d ",id);
-
-   sLabel= new TGLabel(hframe, tit);
-   hframe->AddFrame( sLabel,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sLabel->MapWindow();
-   sLabel->SetTextJustify(kTextLeft);
-
-
-
-   sOutput= new TGCheckButton(hframe, "Out");
-   hframe->AddFrame( sOutput,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sOutput->MapWindow();
-
- 
-   sOutput->Connect("Toggled(Bool_t)","ctbSignal",this,"ToggledOutput(Bool_t)");
-
-   sDbitList= new TGCheckButton(hframe, "DB List");
-   hframe->AddFrame( sDbitList,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sDbitList->MapWindow();
-
-   sDbitList->Connect("Toggled(Bool_t)","ctbSignal",this,"ToggledDbitList(Bool_t)");
-
-
-   sPlot= new TGCheckButton(hframe, "Plot");
-   hframe->AddFrame( sPlot,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   sPlot->MapWindow();
-
-   sPlot->Connect("Toggled(Bool_t)","ctbSignal",this,"ToggledPlot(Bool_t)");
-   
-   fColorSel = new TGColorSelect(hframe, id+1, 0);
-   fColorSel->Connect("ColorSelected(Pixel_t)","ctbSignal",this,"ColorChanged(Pixel_t)");
-   hframe->AddFrame(fColorSel, new TGLayoutHints(kLHintsTop |
-                          kLHintsLeft, 2, 0, 2, 2));
-   
-
-   fColorSel->SetColor(TColor::Number2Pixel(id+1));
-
-   
-   ToggledOutput(kFALSE);
-
-  
-   ToggledPlot(kFALSE);
-
-  //  if (id==63) {
-//      sOutput->SetOn(kTRUE);
-//      sOutput->SetEnabled(kFALSE);
-//    }
-// #ifdef CTB
-//    if (id==62) {
-//      sOutput->SetOn(kTRUE);
-//      sOutput->SetEnabled(kFALSE);
-//    }
-
-//    // if (id>=32 && id<48)
-//    //   fixOutput(1);
-//    // else if (id>=48 && id<64)
-//    //   fixOutput(0);
-
-// #endif
-}
-int ctbSignal::setSignalAlias(char *tit, int plot, int col) {
-
-  if (tit)
-    sLabel->SetText(tit);
-
-  if (plot>0) {
-      sPlot->SetOn(kTRUE,kTRUE); 
-  } else if (plot==0)
-      sPlot->SetOn(kFALSE,kTRUE);
-    
-  if (col>=0)
-    fColorSel->SetColor(col);//TColor::Number2Pixel(col+1));
-
-  fColorSel->SetEnabled(sPlot->IsOn());
-  return 0;
-
-}
-
-string ctbSignal::getSignalAlias() {
-  
-
-  ostringstream oss;
-  oss << "BIT" << dec << id << " " << sLabel->GetText()->Data() << " " << sPlot->IsOn() << hex << " " << fColorSel->GetColor() << endl;
-  return oss.str();
-
-
-
-
-}
-int ctbSignal::setOutput(Long64_t r) {
-
-
-  //  cout << hex << r << dec <<endl;
-
-  Long64_t mask=((Long64_t)1<<id);
-
-  if (r&mask)
-      sOutput->SetOn(kTRUE,kTRUE);
-  else 
-      sOutput->SetOn(kFALSE,kTRUE);
-    
-  return sOutput->IsOn();
-
-}
-
-int ctbSignal::fixOutput(int i) {
-
-  if (i) {
-    sPlot->SetOn(kFALSE);
-    //sClock->SetOn(kFALSE,kTRUE);
-    sOutput->SetOn(kTRUE);
-    //   sPlot->SetEnabled(kFALSE);
-    //  sClock->SetEnabled(kTRUE);
-  } else {
-    sOutput->SetOn(kFALSE,kTRUE);
-    //  sClock->SetOn(kFALSE);  
-    // sClock->SetEnabled(kFALSE);
-    sPlot->SetEnabled(kTRUE);
-  }
-  sOutput->SetEnabled(kFALSE);
-  return 0;
-
-}
-
-int ctbSignal::setDbitList(Long64_t r) {
-
-  if (r)
-      sDbitList->SetOn(kTRUE,kFALSE);
-  else 
-      sDbitList->SetOn(kFALSE,kFALSE);
-    
-  return sDbitList->IsOn();
-
-}
-
-int ctbSignal::isDbitList() { return sDbitList->IsOn();}
-int ctbSignal::isOutput() { return sOutput->IsOn();}
-int ctbSignal::isPlot() { return sPlot->IsOn();}
-Pixel_t ctbSignal::getColor(){return fColorSel->GetColor();}
-
-void ctbSignal::ToggledOutput(Bool_t b) {
-  ToggledSignalOutput(id);
-  if (b) {
-    // sClock->SetEnabled(kTRUE);
-    sPlot->SetOn(kFALSE);
-    // sPlot->SetEnabled(kFALSE);
-    fColorSel->SetEnabled(kFALSE);
-  } else {
-    // sClock->SetEnabled(kFALSE);
-    // sClock->SetOn(kFALSE);
-    sPlot->SetEnabled(kTRUE);
-    if ( sPlot->IsOn())
-      fColorSel->SetEnabled(kFALSE);
-    else
-      fColorSel->SetEnabled(kTRUE);
-  }
-
-
-}
-
-void ctbSignal::ToggledDbitList(Bool_t b){
-  Long_t mask=id;
-  ToggledSignalDbitList(mask);
-}
-
-
-void ctbSignal::ToggledPlot(Bool_t b){
-  Long_t mask=b<<id;
-  ToggledSignalPlot(mask);
-  fColorSel->SetEnabled(b);
-}
-
-void ctbSignal::ColorChanged(Pixel_t p){
-  ToggledSignalPlot(id);
-}
-
-
-void ctbSignal::ToggledSignalOutput(Int_t b) {
-  cout << "Toggle signal " << id << " " << b  << " " <<  sOutput->IsOn() <<endl;;
-  Emit("ToggledSignalOutput(Int_t)", id);
-}
-
-void ctbSignal::ToggledSignalDbitList(Int_t b){
-  cout << "Toggle dbitlist " << id << " " << b << endl;;
-  Emit("ToggledSignalDbitList(Int_t)", id);
-}
-
-void ctbSignal::ToggledSignalPlot(Int_t b){
-  Emit("ToggledSignalPlot(Int_t)", id);
-}
-
-
-ctbSignals::ctbSignals(TGVerticalFrame *page, sls::Detector *det)
-  : TGGroupFrame(page,"IO Signals",kVerticalFrame), myDet(det) {
-
-
-  SetTitlePos(TGGroupFrame::kLeft);
-  page->AddFrame(this,new TGLayoutHints( kLHintsTop | kLHintsExpandX , 10,10,10,10));
-  MapWindow();
-  
-
-  TGHorizontalFrame *hframe;
- 
-  TGHorizontalFrame* hhframe=new TGHorizontalFrame(this, 800,800);
-  AddFrame(hhframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hhframe->MapWindow();
-
-  TGVerticalFrame *vframe;
-
-
-
-
-  int idac=0;
-  for (idac=0; idac<NSIGNALS; idac++) {
-    if (idac%((NSIGNALS+2)/2)==0) {
-    vframe=new TGVerticalFrame(hhframe, 400,800);
-     hhframe->AddFrame(vframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    vframe->MapWindow();
-    }
-
-
-    signals[idac]=new ctbSignal(vframe,idac,myDet);
-    signals[idac]->Connect("ToggledSignalOutput(Int_t)","ctbSignals",this,"ToggledOutReg(Int_t)");
-    signals[idac]->Connect("ToggledSignalDbitList(Int_t)","ctbSignals",this,"ToggledDbitList(Int_t)");
-    signals[idac]->Connect("ToggledSignalPlot(Int_t)","ctbSignals",this,"ToggledPlot(Int_t)");
- 
-    vframe->AddFrame(signals[idac],new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    signals[idac]->MapWindow();
-
-
-  }
-
-  hframe=new TGHorizontalFrame(vframe, 800,50);
-  vframe->AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-  hframe->MapWindow();
-
-
-  TGLabel *label= new TGLabel(hframe, "IO Control Register: ");
-   hframe->AddFrame(label,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   label->MapWindow();
-   label->SetTextJustify(kTextLeft);
-
-
-   eIOCntrlRegister = new TGNumberEntry(hframe, 0, 16,999, TGNumberFormat::kNESHex,
-                                               TGNumberFormat::kNEANonNegative, 
-                                               TGNumberFormat::kNELNoLimits);
-
-  hframe->AddFrame(eIOCntrlRegister,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 1, 1, 1, 1));
-   eIOCntrlRegister->MapWindow();
-   eIOCntrlRegister->Resize(150,30);
-
-
-
-
-    hframe=new TGHorizontalFrame(vframe, 800,50);
-    vframe->AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    hframe->MapWindow();
-   
-
-   label= new TGLabel(hframe, "DBit Offset: ");
-   hframe->AddFrame(label,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 1, 1, 1, 1));
-   label->MapWindow();
-   label->SetTextJustify(kTextLeft);
-
-
-   eDbitOffset = new TGNumberEntry(hframe, 0, 9,999, TGNumberFormat::kNESInteger,
-                                               TGNumberFormat::kNEANonNegative, 
-                                               TGNumberFormat::kNELNoLimits);
-
-  hframe->AddFrame(eDbitOffset,new TGLayoutHints(kLHintsTop |  kLHintsExpandX, 1, 1, 1, 1));
-   eDbitOffset->MapWindow();
-   eDbitOffset->Resize(150,30);
-   
- 
-  TGTextEntry *e= eDbitOffset->TGNumberEntry::GetNumberEntry();
-    e->Connect("ReturnPressed()","ctbSignals",this,"setDbitOffset()");
-
-    e->Connect("ValueSet(Long_t)","ctbSignals",this,"setDbitOffset(Long_t)");
-}
-
-
-
-
-int ctbSignals::setSignalAlias(string line) {
-
-  int is=-1, plot=0, col=-1;
-  char tit[100];
-  int narg=sscanf(line.c_str(),"BIT%d %s %d %d",&is,tit,&plot,&col);
-  if (narg<2)
-    return -1;
-  if (is>=0 && is<NIOSIGNALS) {
-    signals[is]->setSignalAlias(tit,plot,col);
-  }
-  return is;
-
-}
-
-string ctbSignals::getSignalAlias() {
-
-  ostringstream oss;
-  for (int is=0; is<NIOSIGNALS; is++)
-    oss << signals[is]->getSignalAlias() << endl;
-
-
-    return oss.str();
-
-}
-
-
-void ctbSignals::update() {
-  try {
-
-    Long64_t oreg = static_cast<Long64_t>(myDet->getPatternIOControl().tsquash("Different values"));
-    cout << hex << oreg << dec << endl;
-
-    for (int idac=0; idac<NIOSIGNALS; idac++) {
-      signals[idac]->setOutput(oreg);
-    }
-
-  } CATCH_DISPLAY ("Could not get patternIOcontrol.", "ctbSignals::update")
-
-  if (myDet->getDetectorType().squash() == slsDetectorDefs::MOENCH) {
-    // enable all
-    for (int is=0; is<64; is++) {
-      signals[is]->setDbitList(1);
-    } 
-    eDbitOffset->SetNumber(0);
-  } 
-  
-  // ctb
-  else {
-    try {
-
-      auto dbitlist = myDet->getRxDbitList().tsquash("Different values");
-      // enable all
-      if (dbitlist.empty()) {
-        for (int is=0; is<64; is++) {
-          signals[is]->setDbitList(1);
-        } 
-      }
-      else {
-        // disable all
-        for (int is=0; is<64; is++) {
-          signals[is]->setDbitList(0);
-        }
-        // enable selected
-        for (const auto &value : dbitlist)  {
-          signals[value]->setDbitList(1);
-        }
-      }
-
-    } CATCH_DISPLAY ("Could not get receiver dbit list.", "ctbSignals::update")
-
-    try {
-      auto val = myDet->getRxDbitOffset().tsquash("Different values");
-      eDbitOffset->SetNumber(val);
-    } CATCH_DISPLAY ("Could not get receiver dbit offset.", "ctbSignals::update")
-  }
-}
-
-
-string ctbSignals::getSignalParameters() {
-
-  try {
-
-    auto val = myDet->getPatternIOControl().tsquash("Different values");
-    ostringstream line;
-    line <<  "patioctrl " << hex << val << dec << endl;
-    return line.str();
-
-  } CATCH_DISPLAY ("Could not get patternIOcontrol.", "ctbSignals::getSignalParameters")
-
-  return ("");
-}
-
-void ctbSignals::ToggledOutReg(Int_t mask) {
-  try {
-
-    Long64_t oreg = static_cast<Long64_t>(myDet->getPatternIOControl().tsquash("Different values"));
-    Long64_t m=((Long64_t)1)<<mask;
-    cout << dec << sizeof(Long64_t) << " " << mask << " " << hex << m << " ioreg " << oreg;
-
-    if (signals[mask]->isOutput()) {
-      cout <<  " or " << m ;
-      oreg|=m;
-    } else {
-      cout <<  " not " << ~m ;
-      oreg&=~m;
-    }
-    cout <<  " after " << oreg << endl;
-
-    myDet->setPatternIOControl(static_cast<uint64_t>(oreg));
-    oreg = static_cast<Long64_t>(myDet->getPatternIOControl().tsquash("Different values"));
-    cout << dec << sizeof(Long64_t) << " " << mask << " " << hex << m << " ioreg " << oreg << endl;
-
-    eIOCntrlRegister->SetText(to_string(oreg).c_str());
-
-  } CATCH_DISPLAY ("Could not get/set patternIOcontrol.", "ctbSignals::ToggledOutReg")
-
-}
-
-
-
-void ctbSignals::ToggledDbitList(Int_t mask){
-  try {
-
-    auto dbitlist = myDet->getRxDbitList().tsquash("Different values");
-
-    // anyway all enabled
-    if ((dbitlist.empty()) && (signals[mask]->isDbitList())) {
-      ;
-    } 
-    // set the dbitlist
-    else  {
-      std::vector <int> new_dbitlist;
-      for (int is=0; is<64; is++) {
-        if (signals[is]->isDbitList()){ 
-          new_dbitlist.push_back(is);
-          cout << is << " " << new_dbitlist.size() - 1 << endl;
-        }
-      }
-      if (new_dbitlist.size() > 64) 
-        new_dbitlist.clear();
-      myDet->setRxDbitList(new_dbitlist);
-      // get list again
-      dbitlist = myDet->getRxDbitList().tsquash("Different values");
-    }
-    
-    // enable all
-    if (dbitlist.empty()) {
-      for (int is=0; is<64; is++) {
-        signals[is]->setDbitList(1);
-      } 
-    }
-    else {
-      // disable all
-      for (int is=0; is<64; is++) {
-        signals[is]->setDbitList(0);
-      }
-      // enable selected
-      for (const auto &value : dbitlist)  {
-        signals[value]->setDbitList(1);
-      }
-    }
-
-  } CATCH_DISPLAY ("Could not get/set receiver dbit list.", "ctbSignals::ToggledDbitList")
-}
-
-
-
-
-void ctbSignals::ToggledPlot(Int_t b) {
-  
-  Emit("ToggledSignalPlot(Int_t)", b);
-
-}
-
-
-void ctbSignals::ToggledSignalPlot(Int_t b) {
-  
-  Emit("ToggledSignalPlot(Int_t)", b);
-
-}
-
-
-Pixel_t ctbSignals::getColor(int i){
-  if (i>=0 && i<NSIGNALS) 
-    return signals[i]->getColor();
-  return static_cast<Pixel_t>(-1);
-}
-
-int ctbSignals::getPlot(int i){
-  if (i>=0 && i<NSIGNALS) 
-    return signals[i]->isPlot();
-  return -1;
-};
-
-void ctbSignals::setDbitOffset(Long_t) {
-  setDbitOffset();
-}
-
-void ctbSignals::setDbitOffset(){
-  try {
-    myDet->setRxDbitOffset(eDbitOffset->GetNumber());
-  } CATCH_DISPLAY ("Could not set receiver dbit offset.", "ctbSignals::setDbitOffset")
-}

ctbGui/ctbSignals.h

@@ -1,123 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-#ifndef CTBSIGNALS_H
-#define CTBSIGNALS_H
-#include  <TGFrame.h>
-
-
-#define NSIGNALS 64
-
-#define NIOSIGNALS 64 //for moench board was 52
-
-
-#define ADCLATCH 63
-#define DIGSIGLATCH 62
-
-
-
-
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TGCheckButton;
-class TH1I;
-class  TGTextButton;
-class TGColorSelect;
-
-
-
-class TGNumberEntry;
-namespace sls
-{
-   class Detector;
-};
-class ctbSignal;
-
-#include <string>
-using namespace std;
-
-class ctbSignal : public TGHorizontalFrame {
-
-  // RQ_OBJECT("ctbSignal")
-
-private:
-
-   TGLabel *sLabel;
-   TGCheckButton *sOutput;
-   TGCheckButton *sDbitList;
-   TGCheckButton *sPlot;
-   TGLabel *sValue;
-   TGNumberEntry *sEntry;
-   TGColorSelect *fColorSel;
-
-   sls::Detector *myDet;
-   Int_t id;
-
-   TH1I *hsig;
-
-public:
-
-   ctbSignal(TGFrame *page, int i, sls::Detector *det);
-   int setSignalAlias(char *tit, int plot, int col);
-   string getSignalAlias();
-
-   TH1I *getPlot() {return hsig;};
-   int setOutput(Long64_t);
-   int fixOutput(int);
-   int setDbitList(Long64_t);
-
-   void ToggledOutput(Bool_t); 
-   void ToggledDbitList(Bool_t); 
-   void ToggledPlot(Bool_t); 
-   void ColorChanged(Pixel_t); 
-
-   int isDbitList();
-   int isOutput();
-   int isPlot();
-   Pixel_t getColor();
-
-
-   void ToggledSignalOutput(Int_t); //*SIGNAL*
-   void ToggledSignalDbitList(Int_t); //*SIGNAL*
-   void ToggledSignalPlot(Int_t); //*SIGNAL*
-
-
-
-   ClassDef(ctbSignal,0)
-};
-
-class ctbSignals : public TGGroupFrame {
-private:
- 
-  ctbSignal *signals[NSIGNALS];
-
-  TGNumberEntry *eIOCntrlRegister;
-  TGNumberEntry *eDbitOffset;
-
-  sls::Detector *myDet;
-
-public:
-  ctbSignals(TGVerticalFrame *page, sls::Detector *det);
-   int setSignalAlias(string line);
-   string getSignalAlias();
-
-   int getPlot(int);
-   Pixel_t getColor(int);
-   
-   void update();
-   // void saveParameters();
-   string getSignalParameters();
-
-   //void setDbitList(Int_t);
-   void setDbitOffset(Long_t);
-   void setDbitOffset();
-
-   void ToggledOutReg(Int_t);
-   void ToggledDbitList(Int_t);
-   void ToggledPlot(Int_t);
-   void ToggledSignalPlot(Int_t); //*SIGNAL*
-
-   ClassDef(ctbSignals,0)
-};
-
-#endif

ctbGui/ctbSlowAdcs.cpp

@@ -1,184 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-
-#include <stdio.h>
-#include <iostream>
-#include <fstream>
-
-#include <TGTextEntry.h>
-#include <TGLabel.h>
-#include <TGNumberEntry.h>
-#include <TGButton.h>
-
-#include "ctbSlowAdcs.h"
-#include "ctbDefs.h"
-#include "sls/Detector.h"
-#include "sls/sls_detector_defs.h"
-
-using namespace std;
-
-
-
-
-ctbSlowAdc::ctbSlowAdc(TGGroupFrame *page, int idac, sls::Detector *det) : TGHorizontalFrame(page, 800,50) , id(idac), myDet(det) {
-
-
-    TGHorizontalFrame *hframe=this;
-
-    page->AddFrame(hframe,new TGLayoutHints(kLHintsTop | kLHintsExpandX , 1,1,1,1));
-    MapWindow();
-
-    char tit[100];
-    
-
-   sprintf(tit, "SENSE %d:",idac-1000);
-
-   dacsLabel= new TGLabel(hframe, tit);// new TGLabel(hframe, tit);
-   
- 
-
-   hframe->AddFrame(dacsLabel,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-   dacsLabel->MapWindow();
-   dacsLabel->SetTextJustify(kTextLeft);
-
-  
-
-
-   sprintf(tit, "xxx");
-   dacsValue= new TGLabel(hframe, tit);
-   hframe->AddFrame( dacsValue,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-   dacsValue->MapWindow();
-   dacsValue->SetTextJustify(kTextLeft);
-
-   
-
-   TGTextButton *b= new TGTextButton(hframe, "Update");
-   hframe->AddFrame( b,new TGLayoutHints(kLHintsTop | kLHintsLeft| kLHintsExpandX, 5, 5, 5, 5));
-   b->MapWindow();
-   b->SetTextJustify(kTextLeft);
-
-   b->Connect("Clicked()","ctbSlowAdc",this,"getValue()");
-}
-
-
-
-int ctbSlowAdc::setLabel(char *tit) {
-  if(tit)
-    dacsLabel->SetText(tit);
-
-  return id;
-
-}
-
-string ctbSlowAdc::getLabel() {
-  ostringstream line;
-  line << dacsLabel->GetText() <<  endl;
-
-   //  line << "DAC" << dec << id << " " <<  dacsUnit->IsOn() << endl;
-
-  return line.str();
-}
-
-
-
-int ctbSlowAdc::getValue() {
-  try {
-    std::string s;
-
-    // temp
-    if (id == static_cast<int>(slsDetectorDefs::SLOW_ADC_TEMP)) {
-
-      int val = myDet->getTemperature(static_cast<slsDetectorDefs::dacIndex>(id)).tsquash("Different values");
-      cout << "slow adc temp" << " " << val << endl;
-
-      s = to_string(val) + " " + to_string(0x00b0) + "C";//<2F>C
-      dacsValue->SetText(s.c_str());
-      return val;
-    } 
-    
-    // mv
-    else {
-
-      int val = myDet->getSlowADC(static_cast<slsDetectorDefs::dacIndex>(id)).tsquash("Different values");
-      cout << "slow adc " << id << " " << val << endl;
-      
-      s = to_string(val) + " mV"; 
-      dacsValue->SetText(s.c_str());
-      return val;
-    }
-
-  } CATCH_DISPLAY ("Could not get slow dac " + to_string(id) + ".", "ctbSlowAdc::getValue")
-
-  return -1;
-}
-
-
-
-
-
-
-
-ctbSlowAdcs::ctbSlowAdcs(TGVerticalFrame *page, sls::Detector *det)   : TGGroupFrame(page,"Sense",kVerticalFrame) , myDet(det){
-
-  SetTitlePos(TGGroupFrame::kLeft);
-  page->AddFrame(this,new TGLayoutHints( kLHintsTop | kLHintsExpandX , 10,10,10,10));
-  MapWindow();
-  
-  // cout << "window mapped " << endl;
-
- 
-  for (int idac=0; idac<NSLOWADCS + 1; idac++) {
-
-     adcs[idac]=new ctbSlowAdc(this, idac+1000, myDet);
-
-  }
-  adcs[NSLOWADCS]->setLabel((char*)"Temperature"); 
-}
-
-
-
-
-int ctbSlowAdcs::setSlowAdcAlias(string line) {
-
-  int is=-1, mv=0;
-  char tit[100];
-  int narg=sscanf(line.c_str(),"SENSE%d %s %d",&is,tit,&mv);
-  if (narg<2)
-    return -1;
-  if (is>=0 && is<NSLOWADCS) 
-    adcs[is]->setLabel(tit);
-  return is;
-
-}
-
-string ctbSlowAdcs::getSlowAdcAlias() {
-
-  ostringstream line;
-
-  for (int i=0; i<NSLOWADCS; i++)
-    line << adcs[i]->getLabel() << endl;
-  return line.str();
-}
-
-
-
-
-string ctbSlowAdcs::getAdcParameters() {
-
-  ostringstream line;
-
-  for (int i=0; i<NSLOWADCS; i++) {
-    //line << "dacs:" << i << " " << dacs[i]->getValue << endl;
-    line << "adc:" << i << " " << adcs[i]->getValue() << endl;
-  }    
-  line << "adc:-1" << adcs[NSLOWADCS]->getValue() << endl;
-  return line.str();
-}
-
-
-
-void  ctbSlowAdcs::update() {
-  for (int idac=0; idac<NSLOWADCS+1; idac++) {
-    adcs[idac]->getValue();
-  }
-}

ctbGui/ctbSlowAdcs.h

@@ -1,80 +0,0 @@
-// SPDX-License-Identifier: LGPL-3.0-or-other
-// Copyright (C) 2021 Contributors to the SLS Detector Package
-
-
-#ifndef CTBSLOWADCS_H
-#define CTBSLOWADCS_H
-#include  <TGFrame.h>
-
-
-//#define NDACS 16
-#define NSLOWADCS 8
-
-
-
-
-class TGTextEntry;
-class TGLabel;
-class TGNumberEntry;
-class TGCheckButton;
-class TGTextButton;
-
-
-
-namespace sls
-{
-   class Detector;
-};
-
-#include <string>
-using namespace std;
-
-class ctbSlowAdc : public TGHorizontalFrame {
-
-
- protected:
-  // TGLabel *dacsLabel;
-  // TGNumberEntry *dacsEntry;
-  // TGCheckButton *dacsUnit;
-   TGLabel *dacsLabel;
-   TGLabel *dacsValue;
-   int id;
-
-   sls::Detector* myDet;
- public:
-   ctbSlowAdc(TGGroupFrame*, int , sls::Detector*);
-   int getValue();
-   
-   int setLabel(char *tit);
-   string getLabel();
-
-
-
-   ClassDef(ctbSlowAdc,0)
-};
-
-
-class ctbSlowAdcs : public TGGroupFrame {
-private:
-  
-
-
-   ctbSlowAdc *adcs[NSLOWADCS+1];
-
-   sls::Detector* myDet;
-
-public:
-   ctbSlowAdcs(TGVerticalFrame *page, sls::Detector*);
-
-   int setSlowAdcAlias(string line);
-   // int setDacAlias(string line);
-   string getSlowAdcAlias();
-   string getAdcParameters();
-
-   void update();
-
-   ClassDef(ctbSlowAdcs,0)
-};
-
-#endif
-

docs/CMakeLists.txt

@@ -40,7 +40,9 @@ set(SPHINX_SOURCE_FILES
   src/pydetector.rst
   src/pyenums.rst
   src/pyexamples.rst
+  src/pyPatternGenerator.rst
   src/servers.rst
+  src/multidet.rst
   src/receiver_api.rst
   src/result.rst
   src/type_traits.rst
@@ -53,11 +55,21 @@ set(SPHINX_SOURCE_FILES
   src/serverdefaults.rst
   src/quick_start_guide.rst
   src/troubleshooting.rst
+  src/pattern.rst
   src/receivers.rst
   src/slsreceiver.rst
   src/udpheader.rst
   src/udpconfig.rst
   src/udpdetspec.rst
+  src/fileformat.rst
+  src/slsreceiverheaderformat.rst
+  src/masterfileattributes.rst
+  src/binaryfileformat.rst
+  src/hdf5fileformat.rst
+  src/zmqjsonheaderformat.rst
+  src/dataformat.rst
+  src/softwarearchitecture.rst
+  src/configcommands.rst
 )
 
 foreach(filename ${SPHINX_SOURCE_FILES})
@@ -75,11 +87,16 @@ configure_file(
   "${SPHINX_BUILD}/gen_server_doc.py"
   @ONLY)
 
-  configure_file(
+configure_file(
   "${CMAKE_CURRENT_SOURCE_DIR}/static/extra.css"
   "${SPHINX_BUILD}/static/css/extra.css"
   @ONLY)
 
+
+file(COPY ${CMAKE_CURRENT_SOURCE_DIR}/src/images
+     DESTINATION ${SPHINX_BUILD}/src)
+     
+
 add_custom_target(server_rst python gen_server_doc.py)  
 
 add_custom_target(docs

docs/conf.py.in

@@ -63,4 +63,4 @@ html_static_path = ['static']
 
 
 def setup(app):
-    app.add_stylesheet('css/extra.css')  # may also be an URL
+    app.add_css_file('css/extra.css')  # may also be an URL

docs/gen_server_doc.py.in

@@ -21,7 +21,7 @@ print('\n\n\n\n SERVER CSV')
 
 src = Path('@CMAKE_SOURCE_DIR@')/'slsDetectorServers/'
 detectors = ['Mythen3', 'Gotthard2', 'Eiger', 
-            'Jungfrau', 'Moench', 'Gotthard', 'Ctb']
+            'Jungfrau', 'Moench', 'Ctb']
 
 
 for det in detectors:

docs/images_src/system_communication_architecture.drawio

@@ -0,0 +1,787 @@
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+  <diagram name="Page-1" id="SqHbah1k9D3XqnipfQD4">
+    <mxGraphModel grid="0" page="0" gridSize="10" guides="1" tooltips="1" connect="1" arrows="1" fold="1" pageScale="1" pageWidth="850" pageHeight="1100" math="0" shadow="0">
+      <root>
+        <mxCell id="0" />
+        <mxCell id="1" parent="0" />
+        <mxCell id="kpcteDQP5Q-WdnKVJ5EM-1" value="" style="rounded=1;whiteSpace=wrap;html=1;fillColor=#BBDDFF;strokeColor=#BBEEFF;" vertex="1" parent="1">
+          <mxGeometry x="459" y="71" width="171" height="134" as="geometry" />
+        </mxCell>
+        <mxCell id="QgYz-w7MwsADk0cZRM1J-27" value="&lt;p&gt;&lt;font face=&quot;Courier New&quot; style=&quot;&quot;&gt;Client listening to&amp;nbsp;&lt;br&gt;&lt;font style=&quot;&quot;&gt;zmqport&lt;/font&gt; : &lt;font style=&quot;&quot;&gt;&lt;b style=&quot;&quot;&gt;30001&lt;/b&gt;&lt;/font&gt;&lt;br&gt;&lt;font style=&quot;&quot;&gt;zmqip&lt;/font&gt;&amp;nbsp; &amp;nbsp;: &lt;font style=&quot;&quot;&gt;&lt;b style=&quot;&quot;&gt;129.129.100.115&lt;/b&gt;&lt;/font&gt;&lt;/font&gt;&lt;/p&gt;" style="text;html=1;align=left;verticalAlign=middle;resizable=1;points=[];autosize=1;strokeColor=#4A7B72;fillColor=default;fontColor=#4A7B72;movable=1;rotatable=1;deletable=1;editable=1;locked=0;connectable=1;" vertex="1" parent="1">
+          <mxGeometry x="-351.99" y="2247" width="186.49" height="51" as="geometry" />
+        </mxCell>
+        <mxCell id="IUwO_ccEPv4BRx6tuxwP-13" value="&lt;font face=&quot;Comic Sans MS&quot;&gt;Client/ GUI&lt;/font&gt;" style="rounded=1;whiteSpace=wrap;html=1;fillColor=#AAAAFF;strokeColor=#AAAAFF;labelPosition=center;verticalLabelPosition=middle;align=center;verticalAlign=middle;fontSize=17;gradientColor=none;fontColor=#FFFFFF;" vertex="1" parent="1">
+          <mxGeometry x="457.65" y="2121" width="132" height="68" as="geometry" />
+        </mxCell>
+        <mxCell id="hmBfKhxy8mBhXzrh4bXw-164" value="" style="rounded=1;whiteSpace=wrap;html=1;fillColor=#f5f5f5;fontColor=#333333;strokeColor=#E6E6E6;" vertex="1" parent="1">
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+        </mxCell>
+        <mxCell id="hmBfKhxy8mBhXzrh4bXw-162" value="" style="rounded=1;whiteSpace=wrap;html=1;fillColor=#DDEEDD;fontColor=#333333;strokeColor=#E6E6E6;" vertex="1" parent="1">
+          <mxGeometry x="-240" y="5215" width="680" height="325" as="geometry" />
+        </mxCell>
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+        </mxCell>
+        <mxCell id="hmBfKhxy8mBhXzrh4bXw-148" value="&lt;font face=&quot;Courier New&quot;&gt;&amp;lt;&amp;lt;class&amp;gt;&amp;gt; Module&lt;/font&gt;" style="rounded=1;whiteSpace=wrap;html=1;fillColor=#99DDDD;strokeColor=#77BBBB;labelPosition=center;verticalLabelPosition=middle;align=center;verticalAlign=middle;fontSize=17;gradientColor=none;fontColor=#FFFFFF;" vertex="1" parent="1">
+          <mxGeometry x="47.629999999999995" y="5405" width="196" height="84" as="geometry" />
+        </mxCell>
+        <mxCell id="hmBfKhxy8mBhXzrh4bXw-147" value="&lt;font face=&quot;Courier New&quot;&gt;&amp;lt;&amp;lt;class&amp;gt;&amp;gt; Module&lt;/font&gt;" style="rounded=1;whiteSpace=wrap;html=1;fillColor=#88CCCC;strokeColor=#77BBBB;labelPosition=center;verticalLabelPosition=middle;align=center;verticalAlign=middle;fontSize=17;gradientColor=none;fontColor=#FFFFFF;" vertex="1" parent="1">
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+        <mxCell id="hmBfKhxy8mBhXzrh4bXw-80" value="" style="rounded=1;whiteSpace=wrap;html=1;fillColor=#f5f5f5;fontColor=#333333;strokeColor=#E6E6E6;" vertex="1" parent="1">
+          <mxGeometry x="-277" y="4445" width="732" height="426" as="geometry" />
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+  </diagram>
+</mxfile>

docs/src/binaryfileformat.rst

@@ -0,0 +1,387 @@
+.. _binary file format:
+
+Binary File Format
+====================
+
+This is the default file format that can be configured using command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
+
+    .. code-block:: bash
+
+        sls_detector_put fformat binary
+
+
+Master File
+--------------
+
+* File Name: [fpath]/[fname]_master_[findex].json :ref:`Details here<file name format>`
+
+* It is in json format and created for every acquisition.
+
+* It contains :ref:`attributes<master file attributes>` relevant to the acquisition. This can vary with detector type shown in :ref:`master json file examples <json master file examples>` here.
+
+* It shows the :ref:`**SLS Receiver Header** <sls receiver header format>` format used in data files.
+
+* Enabled/disabled using command `fmaster <commandline.html#term-fmaster-0-1>`_. 
+
+
+Data File
+----------
+
+* File Name: [fpath]/[fname]_dx_fy_[findex].raw :ref:`Details here<file name format>`
+
+* It store multiple frames sequentially, with total number of frames determined by `rx_framesperfile <commandline.html#term-rx_framesperfile-n_frames>`_ parameter.
+
+* Each frame includes a :ref:`**sls_receiver_header** <sls receiver header format>` structure, followed by the actual frame data.
+
+* More details on :ref:`slsReceiverHeader<sls receiver header format>` and the actual image data is described in the :ref:`Detector Image Size and Format <data format>` section.
+
+
+.. _json master file examples:
+
+JSON Master File Examples
+---------------------------------------------------
+
+Eiger
+^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 15:46:30 2024",
+        "Detector Type": "Eiger",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 2,
+            "y": 1
+        },
+        "Image Size in bytes": 262144,
+        "Pixels": {
+            "x": 512,
+            "y": 256
+        },
+        "Max Frames Per File": 10000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Dynamic Range": 16,
+        "Ten Giga": 0,
+        "Exptime": "1s",
+        "Period": "1s",
+        "Threshold Energy": -1,
+        "Sub Exptime": "2.62144ms",
+        "Sub Period": "2.62144ms",
+        "Quad": 0,
+        "Number of rows": 256,
+        "Rate Corrections": "[0]",
+        "Frames in File": 1,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+
+
+Jungfrau
+^^^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 13:03:53 2024",
+        "Detector Type": "Jungfrau",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 1048576,
+        "Pixels": {
+            "x": 1024,
+            "y": 512
+        },
+        "Max Frames Per File": 10000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1000,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Exptime": "10us",
+        "Period": "2ms",
+        "Number of UDP Interfaces": 1,
+        "Number of rows": 512,
+        "Frames in File": 10,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+
+Gotthard2
+^^^^^^^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 14:18:17 2024",
+        "Detector Type": "Gotthard2",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 2560,
+        "Pixels": {
+            "x": 1280,
+            "y": 1
+        },
+        "Max Frames Per File": 20000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 10,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Exptime": "0ns",
+        "Period": "0ns",
+        "Burst Mode": "burst_internal",
+        "Frames in File": 10,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+Mythen3
+^^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 14:39:14 2024",
+        "Detector Type": "Mythen3",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 15360,
+        "Pixels": {
+            "x": 3840,
+            "y": 1
+        },
+        "Max Frames Per File": 10000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Dynamic Range": 32,
+        "Ten Giga": 1,
+        "Period": "2ms",
+        "Counter Mask": "0x7",
+        "Exptime1": "0.1s",
+        "Exptime2": "0.1s",
+        "Exptime3": "0.1s",
+        "GateDelay1": "0ns",
+        "GateDelay2": "0ns",
+        "GateDelay3": "0ns",
+        "Gates": 1,
+        "Threshold Energies": "[-1, -1, -1]",
+        "Frames in File": 1,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+
+Moench
+^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 14:41:32 2024",
+        "Detector Type": "Moench",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 320000,
+        "Pixels": {
+            "x": 400,
+            "y": 400
+        },
+        "Max Frames Per File": 100000,
+        "Frame Discard Policy": "discardpartial",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Exptime": "10us",
+        "Period": "2ms",
+        "Number of UDP Interfaces": 1,
+        "Number of rows": 400,
+        "Frames in File": 1,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }
+
+Chip Test Board
+^^^^^^^^^^^^^^^
+
+.. code-block:: text
+
+    {
+        "Version": 7.2,
+        "Timestamp": "Wed Nov 13 15:32:59 2024",
+        "Detector Type": "ChipTestBoard",
+        "Timing Mode": "auto",
+        "Geometry": {
+            "x": 1,
+            "y": 1
+        },
+        "Image Size in bytes": 48018,
+        "Pixels": {
+            "x": 3,
+            "y": 1
+        },
+        "Max Frames Per File": 20000,
+        "Frame Discard Policy": "nodiscard",
+        "Frame Padding": 1,
+        "Scan Parameters": "[disabled]",
+        "Total Frames": 1,
+        "Receiver Roi": {
+            "xmin": 4294967295,
+            "xmax": 4294967295,
+            "ymin": 4294967295,
+            "ymax": 4294967295
+        },
+        "Exptime": "0ns",
+        "Period": "0.18s",
+        "Ten Giga": 0,
+        "ADC Mask": "0x2202",
+        "Analog Flag": 1,
+        "Analog Samples": 8003,
+        "Digital Flag": 0,
+        "Digital Samples": 1000,
+        "Dbit Offset": 0,
+        "Dbit Reorder": 1, 
+        "Dbit Bitset": 0,
+        "Transceiver Mask": "0x3",
+        "Transceiver Flag": 0,
+        "Transceiver Samples": 1,
+        "Frames in File": 1,
+        "Frame Header Format": {
+            "Frame Number": "8 bytes",
+            "SubFrame Number/ExpLength": "4 bytes",
+            "Packet Number": "4 bytes",
+            "Bunch ID": "8 bytes",
+            "Timestamp": "8 bytes",
+            "Module Id": "2 bytes",
+            "Row": "2 bytes",
+            "Column": "2 bytes",
+            "Reserved": "2 bytes",
+            "Debug": "4 bytes",
+            "Round Robin Number": "2 bytes",
+            "Detector Type": "1 byte",
+            "Header Version": "1 byte",
+            "Packets Caught Mask": "64 bytes"
+        }
+    }

docs/src/commandline.rst

@@ -4,11 +4,56 @@ Command line interface
 Usage
 -------------
 
-Commands can be used either with sls_detector_get or sls_detector_put
+The syntax is *'[detector index]-[module index]:[command]'*, where the indices are by default '0', when not specified.
+
+.. _cl-module-index-label:
+
+Module index
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+Modules are indexed based on their order in the hostname command. They are used to configure a specific module within a detector and are followed by a ':' in syntax.
+
+    .. code-block::
+
+        # Applies to all modules of detector 0
+        sls_detector_put exptime 5s
+
+        # Applies to only the 4th module
+        sls_detector_put 3:exptime 5s
+
+
+Detector index
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+This index is useful when configuring multiple detectors from a single host. Each detector uses a unique shared memory identified by a detector index, derived again from the hostname command. It is followed by a '-'. 
+
+    .. code-block::
+
+        # For detector with index 2 in shared memory
+        sls_detector_put 2-hostname bchip133+bchip123+bchip456
+        
+        # Without '-', the detector index defaults to 0
+        sls_detector_put hostname bchip133+bchip123+bchip456
+
+        # Accessing all modules with detector index 2
+        sls_detector_put 2-exptime
+
+        # Starting acquisition only for detector with index 2
+        sls_detector_put 2-start
+
+        # Applies only to the 2nd detector, 4th module
+        sls_detector_put 1-3:exptime 5s
+
+
+Command Execution
+^^^^^^^^^^^^^^^^^^^^^^^
+Commands can be executed using:
+
+*   **sls_detector_put**: setting values
+*   **sls_detector_get**: getting values
+*   **sls_detector**: automatically infers based on the number of arguments.
+*   **sls_detector_help**: gets help on the specific command
+*   **sls_detector_acquire**: initiates acquisition with the detector. This command blocks until the entire acquisition process is completed.
 
-.. code-block::
 
-    sls_detector_get vrf
 
 Help
 --------
@@ -24,6 +69,19 @@ Help
     # get help for a particular command
     sls_detector_get -h fpath
     sls_detector_help fpath
+
+    # list of deprecated commands
+    list deprecated
+
+
+Autocompletion
+---------------
+
+bash_autocomplete.sh or zsh_autocomplete.sh must be sourced from the main package folder to enable auto completion of commands and arguments for the command line on that shell.
+
+.. code-block::
+
+    source bash_autocomplete.sh
   
 
 Commands
@@ -32,14 +90,14 @@ Commands
 .. include:: ../commands.rst
 
 
-Depreciated commands
+Deprecated commands
 ------------------------
 
 .. note ::
 	All the dac commands are preceded with the **dac** command. Use command **daclist** to get correct list of dac command arguments for current detector.
 
-.. csv-table:: Depreciated commands
-   :file: ../depreciated.csv
+.. csv-table:: Deprecated commands
+   :file: ../deprecated.csv
    :widths: 35, 35
    :header-rows: 1
 

docs/src/configcommands.rst

@@ -0,0 +1,242 @@
+.. _setup commands:
+
+Setup Commands
+================================
+
+
+Introduction
+-------------
+
+To connect to any device, one needs a unique combination of **IP address** (which identifies the device) and **port number** (which specifies the service). 
+
+This package typically deals with two types of network interfaces:
+
+* **1 GbE public interface** - Accessible from anywhere on the network. Connectivity can be verified by pinging this interface from any PC.
+
+* **10 GbE private interface** - Dedicated to high-speed data transfer with a specific PC. In addition to the 1 GbE public interface (MTU 1500), the device may include one or more private 10 GbE interfaces (MTU 9000), which are not accessible from other machines.
+
+Client to Module
+-----------------
+
+.. figure:: images/Client_module_commands.png
+   :target: _images/Client_module_commands.png
+   :width: 700px
+   :align: center
+   :alt: Client Module Commands
+
+   Client Module TCP Commands
+
+The client configures and controls modules via the 1 GbE public TCP interface.
+
+* Should be able to ping the module's hostname from any PC on the network.
+* If one cannot ping, ensure that it is powered on.
+* If the command cannot connect to the port (`hostname command <commandline.html#term-hostname>`_ failed), the onboard servers may not have started yet.
+
+Each physical module has its own unique IP address. As the IPs are already different, all modules can share the same default ports:
+
+* 1952 - Default Module TCP Control Port
+* 1953 - Default Module TCP Stop port
+
+.. code-block:: bash  
+
+    # Therefore, one can use 
+    hostname bchip100+bchip101+
+    # instead of 
+    hostname bchip100:1952+bchip101:1954+
+
+
+**Simulators**, however, usually run on the same PC. See `virtual servers <https://slsdetectorgroup.github.io/devdoc/virtualserver.html>`_ for more details. In that case, each instance must use a different port. By incrementing port numbers, you can also use the virtual command for convenience.
+
+.. code-block:: bash  
+
+    # Therefore, one can use 
+    virtual 2 1952
+    # instead of 
+    hostname localhost:1952+localhost:1954+
+
+
+
+
+Client to Receiver
+--------------------
+
+.. figure:: images/Client_receiver_commands.png
+   :target: _images/Client_receiver_commands.png
+   :align: center
+   :alt: Client Receiver Commands
+
+   Client Receiver TCP Commands
+
+Each module has a receiver, which can be either local or remote.
+
+The client can configure and control receivers via the 1 GbE public TCP interface:
+
+* Should be able to ping the receiver's hostname from any PC on the network.
+* If one cannot ping, ensure that it is powered on.
+* If the command cannot connect to the port (`rx_hostname command <commandline.html#term-rx_hostname-hostname-or-ip-address>`_ failed), the receivers may not have started yet.
+
+
+Since multiple receiver processes typically run on the same PC, they share the same IP. Here, each receiver process must use a different TCP port for a unique connection. 
+
+* 1954 - Default Receiver TCP port
+
+Configuring the receiver with the command `rx_hostname command <commandline.html#term-rx_hostname-hostname-or-ip-address>`_, sets up a receiver for every module in shared memory automatically ie. every module's receiver TCP port will automatically increment in shared memory. The starting port is defined by the command `rx_tcpport <commandline.html#term-rx_tcpport-port>`_ with the default being 1954.
+
+
+A multi-module command (without colon or module index) sets incremental ports starting from the specified port number.
+
+.. code-block:: bash  
+
+    hostname bchip100+bchip101+bchip102+bchip103+
+    rx_tcport 2000 # sets the receiver port to 2000, 2001, 2002, 2003
+
+
+For example, using default TCP ports (1954, 1955):
+
+.. code-block:: bash  
+
+    hostname bchip100+bchip101+
+    rx_hostname localhost
+    # Equivalent to:
+    rx_hostname localhost:1954+localhost:1955+
+    
+    # or set to another set of ports (automatically incremented)
+    rx_tcpport 1984
+    rx_hostname localhost
+    # instead of
+    rx_hostname localhost:1984+localhost:1985+
+
+
+
+
+Module to Receiver
+-------------------
+
+.. figure:: images/Module_receiver_commands.png
+   :target: _images/Module_receiver_commands.png
+   :align: center
+   :alt: Module Receiver Commands
+
+   Module Receiver UDP Commands
+
+**10GbE Interface**
+
+The module typically sends images to the receiver via a 10 GbE private interface on the receiver PC, which has an MTU of 9000 to support jumbo packets. The private interface is not reachable from other machines, so it cannot be pinged from anywhere. 
+
+**Multiple UDP Packets**
+
+Images are split into UDP packets for transmission. Unlike TCP, UDP is connectionless and does not guarantee delivery. Therefore, the receiver PC must be tuned for reliable reception. See `Troubleshooting <https://slsdetectorgroup.github.io/devdoc/troubleshooting.html>`_.
+
+**UDP Configuration**
+
+Unlike TCP, the module (hardware) requires explicit configuration for sending images via UDP, including:
+
+* Source and destination IPs
+* Source and destination MAC addresses
+* Source and destination ports
+
+**UDP Destination**
+
+Info on where to send the image from the module to.
+
+**UDP Desination IP** - The IP of the receiver PC's 10 GbE interface, usually found via ``ifconfig``. Command: `udp_dstip <commandline.html#term-udp_dstip-x.x.x.x-or-auto>`_. For 1GbE interface and for this command, one can use 'auto' as an argument, which will pick up the IP from the `rx_hostname command <commandline.html#term-rx_hostname-hostname-or-ip-address>`_.
+
+**UDP desintation MAC** - Also obtained from the interface using ``ifconfig``. For built-in receivers, the module configures this automatically from the ``UDP destination IP``. For custom receivers, it must be explicitly provided. Command: `udp_dstmac <commandline.html#term-udp_dstmac-x-x-x-x-x-x>`_
+
+**UDP destination port** - Ensure uniqueness if multiple users share the interface. Command: `udp_dstport <commandline.html#term-udp_dstport-n>`_
+
+* 50001 - Default Receiver UDP port
+
+
+**UDP Source**
+
+As it is a one-way communication (module to receiver with no reply or acknowledgements), info on the source of the image is more for debugging purposes and prevent packet rejection.
+
+**UDP source IP** - Must be on the same subnet as the destination IP (same first three octets) to prevent packet rejection by the receiver interface. For 1GbE interface and for this command (except for Eiger), one can use ``auto`` as an argument, which will pick up the IP from the `hostname command <commandline.html#term-hostname>`_. Command: `udp_srcip <commandline.html#term-udp_srcip-x.x.x.x-or-auto>`_
+
+.. code-block:: bash  
+
+    # 10 GbE interface
+    hostname bchip100
+    udp_dstip 10.0.2.1
+    udp_srcip 10.0.2.19
+    rx_hostname localhost
+
+    # 1 GbE interface
+    hostname bchip100
+    rx_hostname localhost
+    udp_dstip auto # this command uses IP from rx_hostname. So, it comes after.
+    udp_srcip auto # this command uses IP from hostname
+
+**UDP source MAC** - By default, it is set to ``aa:bb:cc:dd:xx:yy`` where ``xx`` and ``yy`` are module row and column indices to differentiate the modules while debugging. Command: `udp_srcmac <commandline.html#term-udp_srcmac-x-x-x-x-x-x>`_
+
+
+**UDP source port** - This is hardcoded in every module to the same value in the detector server and cannot be changed.
+
+Note: If there is a second UDP port on the module, use 'udp_dstport2' or 'udp_dstip2'etc. See `here <https://slsdetectorgroup.github.io/devdoc/dataformat.html>`_ for more detector specific info. 
+
+Receiver to GUI
+-----------------
+
+.. figure:: images/Receiver_gui_commands.png
+   :target: _images/Receiver_gui_commands.png
+   :align: center
+   :alt: Receiver GUI Commands
+
+   Receiver GUI Commands
+
+
+Enabling the GUI automatically streams images from the receiver via ZMQ sockets. Even without the GUI, streaming can be activated explicitly using the command `rx_zmqstream <commandline.html#term-rx_zmqstream-0-1>`_. ZMQ streaming uses TCP/IP, so the ports must be configured appropriately.
+
+**Receiver ZMQ Port** - Port from which the receiver streams ZMQ packets. Command: `rx_zmqport <commandline.html#term-rx_zmqport-port>`_
+
+* 30001 - Default Receiver ZMQ Port (stream out from)
+
+**Client ZMQ Port** - Port that the client ZMQ socket listens to. Command: `zmqport <commandline.html#term-zmqport-port>`_
+
+* 30001 - Default Client ZMQ Port (listens to)
+
+**Client ZMQ IP** - IP address the client ZMQ socket listens to. Command: `zmqip <commandline.html#term-zmqip-x.x.x.x>`_. By default, this is set to the IP of ``rx_hostname``, but can be set to any IP address that the client can reach.
+
+* Default: Receiver’s hostname (rx_hostname)
+
+
+.. note ::   
+
+    ``zmqport`` and ``zmqip`` need to be set up in shared memory before starting up the Gui. If the Gui is already running, change it in the Advanced Tab directly in the Gui.
+    
+    ``rx_zmqstream`` is set to 1 when the GUI is started, but has to be manually set back to 0 to disable zmq streaming in the receiver for better performance when not using the Gui.
+    
+    The GUI hwm (high water mark, which is like a measurement of the number of enqueued zmq packets) values are set to a low number (from library default of possibly 1000 to 2) to reduce the zmq buffer to display only some of the images. Resetting it back to -1 or 1000 should only matter if one plans to not use the Gui and still zmq stream without wanting to drop zmq images (eg. for external processing chain). 
+
+
+
+
+
+Receiver to External Processing
+--------------------------------
+
+.. figure:: images/Receiver_external_process_commands.png
+   :target: _images/Receiver_external_process_commands.png
+   :align: center
+   :alt: Click to zoom
+
+   Receiver External Process Commands
+
+Images from the receiver can also be streamed to an external processing chain for further processing or storage. In this setup:
+
+* The external processor listens to the ZMQ ports and IPs that the receiver streams from.
+
+* The client ZMQ sockets now listen to the ports and IPs that the external processor streams from instead of the receiver.
+
+**Receiver ZMQ Port** - Port from which the receiver streams ZMQ packets. Command: `rx_zmqport <commandline.html#term-rx_zmqport-port>`_
+
+* 30001 - Default Receiver ZMQ Port (stream out from)
+
+**Client ZMQ Port** - Port that the client ZMQ socket listens to. Command: `zmqport <commandline.html#term-zmqport-port>`_. In this set up, it should listen to the zmq port that the external process is streaming out from.
+
+* 30001 - Default Client ZMQ Port (listens to)
+
+**Client ZMQ IP** - IP address the client ZMQ socket listens to. Command: `zmqip <commandline.html#term-zmqip-x.x.x.x>`_. By default, this is set to the IP of ``rx_hostname``, but in this set up, it should listen to the zmq IP that the external process is streaming out from.
+
+* Default: Receiver’s hostname (rx_hostname)

docs/src/dataformat.rst

@@ -0,0 +1,330 @@
+.. _data format:
+
+Detector Image Size and Format
+================================
+
+Each UDP port creates its own output file, which contains the data of the image transmitted over that port. More on number of files and naming for each file in the `File format <fileformat.html>`_ section.
+
+Jungfrau
+-------------
+
+Single Port Configuration
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+.. image:: images/Jungfrau_module.png
+   :target: _images/Jungfrau_module.png
+   :width: 650px
+   :align: center
+   :alt: Jungfrau Module Single Port Configuration
+
+By default, only the outer 10GbE interface is enabled, transmitting the full image over a single UDP port. This results in one file per module containing the complete image.
+
+Total image size = 524,288 bytes 
+   - 8 chips (2 x 4 grid)
+   - 256 x 256 pixels (chip size)
+   - 2 bytes (pixel width)
+
+
+
+Double Port Configuration
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+.. image:: images/Jungfrau_two_port.png
+   :target: _images/Jungfrau_two_port.png
+   :width: 500px
+   :align: center
+   :alt: Jungfrau Module Two Port Configuration
+
+If both interfaces are enabled using the `numinterfaces <commandline.html#term-numinterfaces-1-2>`_ command on compatible hardware and firmware, the image splits into top and bottom halves sent over two UDP ports:
+
+   - The top half transmits via the inner interface (`udp_dstport2 <commandline.html#term-udp_dstport2-n>`_ and `udp_dstip2 <commandline.html#term-udp_dstip2-x.x.x.x-or-auto>`_).
+
+   - The bottom half uses the outer interface(`udp_dstport <commandline.html#term-udp_dstport-n>`_ and `udp_dstip <commandline.html#term-udp_dstip-x.x.x.x-or-auto>`_).
+
+The number of files per module equals the active UDP ports—two files per module when both interfaces are used.
+
+Image size per UDP port or File = 262,144 bytes
+    - **Complete Image size / 2**
+
+
+
+Read Partial Rows
+^^^^^^^^^^^^^^^^^^
+
+.. image:: images/Jungfrau_read_rows.png
+   :target: _images/Jungfrau_read_rows.png
+   :width: 550px
+   :align: center
+   :alt: Jungfrau Module Read Partial Rows Configuration
+
+
+The number of image rows per port can be adjusted using the `readnrows <commandline.html#term-readnrows>`_ command. By default, 512 rows are read, but a smaller value centers the readout vertically (e.g., 8 rows reads 4 above and 4 below the center). Increasing the value symmetrically expands the region toward the top and bottom. Permissible values are multiples of 8.
+
+
+Total image size = 32,768 bytes 
+   - 8 chips (2 x 4 grid)
+   - **8** x 256 pixels (chip size: **8 rows**)
+   - 2 bytes (pixel width)
+
+Note: Still in prototype stage, writes complete image (padded or not depending on `rx_padding <commandline.html#term-rx_padding-0-1>`_ parameter) to file. Only the summary written to console in the receiver handles the `readnrows <commandline.html#term-readnrows>`_ to calculate to calculate complete images received. Only reduces network load, not file size. Use `rx_roi <commandline.html#term-rx_roi-xmin-xmax-ymin-ymax>`_ for file size.
+
+Moench
+-------------
+
+Single Port Configuration
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+.. image:: images/Moench_module.png
+   :target: _images/Moench_module.png
+   :width: 550px
+   :align: center
+   :alt: Moench Module Single Port Configuration
+
+By default, only the outer 10GbE interface is enabled, transmitting the full image over a single UDP port. This results in one file per module containing the complete image.
+
+Total image size = 320,000 bytes 
+   - 400 x 400 pixels (chip size)
+   - 2 bytes (pixel width)
+
+
+
+Double Port Configuration
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+.. image:: images/Moench_two_port.png
+   :target: _images/Moench_two_port.png
+   :width: 400px
+   :align: center
+   :alt: Moench Module Two Port Configuration
+
+If both interfaces are enabled using the `numinterfaces <commandline.html#term-numinterfaces-1-2>`_ command on compatible hardware and firmware, the image splits into top and bottom halves sent over two UDP ports:
+
+   - The top half transmits via the inner interface (`udp_dstport2 <commandline.html#term-udp_dstport2-n>`_ and `udp_dstip2 <commandline.html#term-udp_dstip2-x.x.x.x-or-auto>`_).
+
+   - The bottom half uses the outer interface(`udp_dstport <commandline.html#term-udp_dstport-n>`_ and `udp_dstip <commandline.html#term-udp_dstip-x.x.x.x-or-auto>`_).
+
+The number of files per module equals the active UDP ports—two files per module when both interfaces are used.
+
+Image size per UDP port or File = 160,000 bytes
+    - **Complete Image size / 2**
+
+
+
+Read Partial Rows
+^^^^^^^^^^^^^^^^^^
+
+.. image:: images/Moench_read_rows.png
+   :target: _images/Moench_read_rows.png
+   :width: 400px
+   :align: center
+   :alt: Moench Module Read Partial Rows Configuration
+
+
+The number of image rows per port can be adjusted using the `readnrows <commandline.html#term-readnrows>`_ command. By default, 400 rows are read, but a smaller value centers the readout vertically (e.g., 16 rows reads 8 above and 8 below the center). Increasing the value symmetrically expands the region toward the top and bottom. Permissible values are multiples of 16.
+
+
+Total image size = 12,800 bytes 
+   - **16** x 400 pixels (chip size: **16 rows**)
+   - 2 bytes (pixel width)
+
+Note: Still in prototype stage, writes complete image (padded or not depending on `rx_padding <commandline.html#term-rx_padding-0-1>`_ parameter) to file. Only the summary written to console in the receiver handles the read n rows to calculate complete images received. Only reduces network load, not file size. Use `rx_roi <commandline.html#term-rx_roi-xmin-xmax-ymin-ymax>`_ for file size.
+
+Eiger
+-------------
+
+Default Configuration
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+.. image:: images/Eiger_module.png
+   :target: _images/Eiger_module.png
+   :width: 350px
+   :align: center
+   :alt: Eiger Module Default Configuration
+
+
+Each Eiger module has two independent identical readout systems (other than firmware), each with its own control port and `hostname <commandline.html#term-hostname>`_ to be configured with. They are referred to as the 'top' and 'bottom' half modules. The bottom half module is flipped vertically.
+
+Each half module has 2 parallel UDP ports for 2 chips each. The left UDP port is configured with `udp_dstport <commandline.html#term-udp_dstport-n>`_, while the right UDP port is configured with `udp_dstport2 <commandline.html#term-udp_dstport2-n>`_. This is vice versa for the bottom half module.
+
+
+Image size per UDP port or File = 262,144 bytes 
+   - 2 chips (1 x 2 grid)
+   - 256 x 256 pixels (chip size)
+   - 2 bytes (default pixel width)
+
+
+The myth, the legend, the bottom ports: Demystifying them
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+
+.. figure:: images/Eiger_bottom_1.png
+   :target: _images/Eiger_bottom_1.png
+   :width: 350px
+   :align: center
+   :alt: Eiger Bottom as Firmware gets it
+
+   How the firmware gets the images
+
+
+.. figure:: images/Eiger_bottom_2.png
+   :target: _images/Eiger_bottom_2.png
+   :width: 350px
+   :align: center
+   :alt: Eiger Bottom after the firmware flips it horizontally
+
+   After the firmware flips it horizontally
+
+
+.. figure:: images/Eiger_bottom_3.png
+   :target: _images/Eiger_bottom_3.png
+   :width: 350px
+   :align: center
+   :alt: After the software swaps the udp ports
+
+   After the software swaps the udp ports
+
+
+.. figure:: images/Eiger_bottom_4.png
+   :target: _images/Eiger_bottom_4.png
+   :width: 400px
+   :align: center
+   :alt: After the gui has flipped the bottom vertically
+
+   After the gui has flipped the bottom vertically
+
+
+Note: The same process happens for the bottom 2 udp ports of the quad.
+
+
+Pixel width
+^^^^^^^^^^^^^
+
+The pixel width can be configured to 4, 8, 16 (default) or 32 bits using the command `dr <commandline.html#term-dr-value>`_. This affects image size per UDP port or file.
+
+Flip rows
+^^^^^^^^^^
+
+One can use the command `fliprows <commandline.html#term-fliprows-0-1>`_ to flip the rows vertically for the bottom or top half module. It is sent out to the reciever, but does not flip rows in the output file itself, but rather streams out this info via the json header and thus instructs the GUI to display them correctly.
+
+1GbE/ 10GbE Interfaces
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+Both UDP ports `udp_dstport <commandline.html#term-udp_dstport-n>`_ and `udp_dstport2 <commandline.html#term-udp_dstport2-n>`_ are used in Eiger as shows in the figure. Both of them can be set to use either the 1GbE or the 10GbE interface for data. The 1GbE interface is used also for control and configuration. For data, the 1GbE interface is enabled by default. It can be disabled by enabling the `tengiga <commandline.html#term-tengiga-0-1>`_ command and updating both the `udp_dstport <commandline.html#term-udp_dstport-n>`_ , `udp_dstport2 <commandline.html#term-udp_dstport2-n>`_ , `udp_dstip <commandline.html#term-udp_dstip-x.x.x.x-or-auto>`_ commands to match the 1GbE or 10GbE interface. This setting only affects packetsize and number of packets, but does not affect the total image size. 
+
+Reducing network load
+^^^^^^^^^^^^^^^^^^^^^^
+
+**Activate**: By default, the `hostname <commandline.html#term-hostname>`_ command activates the respective half module it connects to, enabling all UDP ports. To deactivate an entire half module (i.e., both UDP ports), use the `activate <commandline.html#term-activate-0-1>`_ command. This disables both UDP ports for that half module, so no data is transmitted from it — only half of the module is read out. To specify which half module to activate or deactivate, use the module index (for Eiger, each half module has its own module index).
+
+
+**Datastream**: The `datastream <commandline.html#term-datastream-left-right-0-1>`_ command with arguments to specify which port can be used to disable the data streaming from one or both the two UDP ports in a half module. This allows for more flexible configurations, such as reading only two chips or one UDP port of a half module. To specify which half module to activate or deactivate, use the module index (for Eiger, each half module has its own module index).
+
+Note: Only the activated ports will write data as it does not make sense to write an empty file.
+
+**Read Partial Rows**: The number of image rows per port can be adjusted using the `readnrows <commandline.html#term-readnrows>`_ command. By default, 256 rows are read, but a smaller value centers the readout vertically (e.g., 8 rows reads 4 above and 4 below the center). Increasing the value symmetrically expands the region toward the top and bottom. Permissible values depend on dynamic range and 10GbE enable.
+
+.. image:: images/Eiger_read_rows.png
+   :target: _images/Eiger_read_rows.png
+   :width: 400px
+   :align: center
+   :alt: Eiger Module Read Partial Rows Configuration
+
+
+
+Total image size per UDP Port = 8,192 bytes 
+   - 2 chips (1 x 2 grid)
+   - **8** x 256 pixels (chip size: **8 rows**)
+   - 2 bytes (default pixel width)
+
+Note: Still in prototype stage, writes complete image (padded or not depending on `rx_padding <commandline.html#term-rx_padding-0-1>`_ parameter) to file. Only the summary written to console in the receiver handles the `readnrows <commandline.html#term-readnrows>`_ to calculate complete images received. Only reduces network load, not file size. Use `rx_roi <commandline.html#term-rx_roi-xmin-xmax-ymin-ymax>`_ for file size.
+
+Quad
+^^^^^^
+
+The Eiger quad is a special hardware configuration that uses only the top half-module to create a quad layout. In this setup, the second half of the top module—normally associated with the right-side UDP port—is used to represent the inverted bottom half of the quad.
+
+As with any standard half-module, it includes one control TCP port (with a hostname) and two UDP data ports (top and bottom). When the quad option is enabled, the firmware automatically flips the second UDP port vertically.
+
+In this configuration, the fliprows command cannot be used to flip the entire half-module. Instead, the receiver automatically includes row-flipping information only for the second UDP port in the JSON header, so the GUI can apply the correct orientation during display
+
+.. image:: images/Eiger_quad.png
+   :target: _images/Eiger_quad.png
+   :width: 300px
+   :align: center
+   :alt: Eiger Quad Configuration
+
+Image size per UDP port = same as a normal Eiger UDP port
+
+Mythen3 
+-------------
+
+
+
+Default Configuration
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+.. image:: images/Mythen3_module.png
+   :target: _images/Mythen3_module.png
+   :align: center
+   :alt: Mythen3 Module Default Configuration
+
+Each Mythen3 module is a 1D detector with 10 chips, each with 128 channels. Each channel has 3 counters that are enabled by default.
+
+Image size = 15,360 bytes 
+   - 10 chips (1 x 10 grid)
+   - 128 channels
+   - 3 counters
+   - 4 bytes (default pixel width)
+
+Counters
+^^^^^^^^^^^
+
+If all 3 counters are enabeld, the frame size for each channel is multiplied by 3. The counters are stored consecutively per channel. One can disable one or more of the counters using the `counters <commandline.html#term-counters-i0-i1-i2-...>`_ command. The frame size will then be reduced accordingly.
+
+Image size = 10,240 bytes 
+   - 10 chips (1 x 10 grid)
+   - 128 channels
+   - 2 counters (0, 1 enabled)
+   - 4 bytes (default pixel width)
+
+Pixel width
+^^^^^^^^^^^^^
+
+The pixel width can be configured to 8, 16 or 32 (default) bits using the command `dr <commandline.html#term-dr-value>`_. 32 bits is actually 24 bits in the chip. This setting does affect image size.
+
+1GbE/ 10GbE Interfaces
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+
+The UDP port can be set to use either the 1GbE or the 10GbE interface for data. The 1GbE interface is used also for control and configuration. For data, the 10GbE interface is enabled by default. It can be disabled by using the `tengiga <commandline.html#term-tengiga-0-1>`_ command and updating the `udp_dstport <commandline.html#term-udp_dstport-n>`_ and `udp_dstip <commandline.html#term-udp_dstip-x.x.x.x-or-auto>`_ commands to match the 1GbE or 10GbE interface. This setting only affects packetsize and number of packets, but does not affect the total image size. 
+
+
+Gotthard2
+-------------
+
+
+Default Configuration
+^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+.. image:: images/Gotthard2_module.png
+   :target: _images/Gotthard2_module.png
+   :align: center
+   :alt: Gotthard2 Module Default Configuration
+
+Each Gotthard2 module is a 1D detector with 10 chips, each with 128 channels. 
+
+Image size = 2,560 bytes 
+   - 10 chips (1 x 10 grid)
+   - 128 channels
+   - 2 bytes (pixel width)
+
+Veto Info
+^^^^^^^^^^^
+
+One can enable veto data in the chip of the Gotthard2 module using the `veto <commandline.html#term-veto-0-1>`_ command. By default, this is disabled. This does not affect the image size as veto information is not sent out through the same 10GbE interface.
+
+One can either stream out the veto info through the low latency link (2.5 gbps) or for debugging purposes through another 10GbE interface.
+
+For debugging purposes, the veto info can be enabled using the `numinterfaces <commandline.html#term-numinterfaces-1-2>`_ command and the following parameters are updated: `udp_dstport2 <commandline.html#term-udp_dstport2-n>`_ and `udp_dstip2 <commandline.html#term-udp_dstip2-x.x.x.x-or-auto>`_. The veto data from this port is of course written to a separate file and is not combined in the virtual HDF5 file mapping (complete image mapped).
+
+

docs/src/dependencies.rst

@@ -14,14 +14,19 @@ the shared libraries these are needed:
 
  * Linux, preferably recent kernel (currently no cross platform support)
  * CMake >= 3.14 
- * C++11 compatible compiler. (We test with gcc and clang)
+ * C++17 compatible compiler. (We test with gcc and clang)
+
+.. note ::  
+    
+    For v9.x.x of slsDetectorPackage and older, C++11 compatible compiler.
+
 
 -----------------------
 Python bindings
 -----------------------
 
- * Python > 3.6
- * pybind11 2.11.0 (packaged in libs)
+ * Python >= 3.8
+ * pybind11 2.13.6 (packaged in libs)
 
 .. note ::  
 

docs/src/detector.rst

@@ -13,7 +13,6 @@ containing results from all modules. (:ref:`Result class<Result Class>`)
 
 Here are some :ref:`examples <Cplusplus Api Examples>` on how to use the API.
 
-.. _Cplusplus Api Examples:
 .. doxygenclass:: sls::Detector
    :members:
    :undoc-members:

docs/src/fileformat.rst

@@ -0,0 +1,75 @@
+.. _file format:
+
+File format
+================================
+
+If `fwrite <commandline.html#term-fwrite-0-1>`_ is enabled, the receiver will write data to files. 
+
+Number of Files
+----------------
+
+Every acquisition will create a master file and data files. 
+
+An acquisition can have multiple data files for a single frame. The number of files is determined by the number of UDP ports per module and the number of modules.
+
+    * Every modules has its own receiver process. Every receiver process can have 1 or 2 UDP ports.
+    * Each UDP port will create its own file. Therefore, each receiver can write 1 or 2 files.
+    * So, for example a detector with 4 modules with 2 UDP ports each will create a total of 8 files with file names containing UDP port index **'_d0'** to **'_d7'**.
+
+A new file containing **'_f[file_index]'** in file name is also created when reaching the maximum frames per file. Configured using `rx_framesperfile <commandline.html#term-rx_framesperfile-n_frames>`_.
+
+.. _file name format:
+
+Naming
+-------
+| Master File Name: [fpath]/[fname]_master_[findex].[ext]
+
+
+| Data File Name: [fpath]/[fname]_dx_fy_[findex].[ext] 
+
+   * fpath: file path set using command `fpath <commandline.html#term-fpath-path>`_. Default: '/'
+   * fname: file name prefix using command `fname <commandline.html#term-fname-name>`_. Default: "run"
+   * findex: acquisition index using command `findex <commandline.html#term-findex-n_value>`_. Automatically incremented for every acquisition with `sls_detector_acquire <commandline.html#term-acquire>`_ (if `fwrite <commandline.html#term-fwrite-0-1>`_ enabled).
+   * x: unique udp port index. New file per UDP port.
+   * y: file index. New file created after reaching max frames per file.
+   * ext: file extension. Default: "raw"(data file) or "json"(master file)
+
+
+Some file name examples:
+
+    .. code-block:: bash
+
+        # first file
+        path-to-file/run_d0_f0_0.raw
+
+        # first file for second UDP port
+        path-to-file/run_d1_f0_0.raw
+
+        # second file after reaching max frames in first file
+        path-to-file/run_d0_f1_0.raw
+        
+        # second acquisition, first file
+        path-to-file/run_d0_f0_1.raw
+
+
+Formats
+--------
+
+There are 2 file formats supported by the receiver:
+
+    * Binary - extension .json (master file) or .raw (data files)
+    * HDF5 - extension .h5
+
+The default is binary. HDF5 can be enabled by compiling the package with HDF5 option enabled. The file format is set using the command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
+
+
+Content
+--------
+
+| `Master File`: Contains the metadata of the acquisition. The content is described in :ref:`master file attributes <master file attributes>`.
+
+
+| `Data File`: Contains the metadata for each image (:ref:`slsReceiverHeader<sls receiver header format>`) and the `data of the image` transmitted over that port. The image data is described in :ref:`Detector Image Size and Format <data format>` section.
+
+
+| More content and examples are found in the :ref:`HDF5 file format <hdf5 file format>` and :ref:`Binary file format <binary file format>` sections.

docs/src/firmware.rst

@@ -1,3 +1,5 @@
+.. _firmware upgrade:
+
 Firmware Upgrade
 =================
 
@@ -98,7 +100,7 @@ Upgrade
 
     * 6.1.2 server has a fix for seamless fpga programming
 
-    * We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command 'updatedetectorserver' or 'copydetectorserver'.
+    * We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command `updatedetectorserver <commandline.html#term-updatedetectorserver-server_name-with-full-path>`_.
 
     * Then use command 'programfpga' to only update firmware or use command 'update' to update firmware and server to the latest release.
 
@@ -131,42 +133,6 @@ Program from console
 
 
 
-Gotthard I
------------
-
-Download 
-^^^^^^^^^^^^^
-- detector server corresponding to package in slsDetectorPackage/serverBin
-
-- `pof files <https://github.com/slsdetectorgroup/slsDetectorFirmware>`__
-
-
-.. _firmware upgrade using blaster for blackfin:
-
-Upgrade
-^^^^^^^^
-.. warning ::
-    | Gotthard firmware cannot be upgraded remotely and requires the use of USB-Blaster.
-    | It is generally updated by us.
-
-#. Download `Altera Quartus software or Quartus programmer <https://fpgasoftware.intel.com/20.1/?edition=standard&platform=linux&product=qprogrammer#tabs-4>`__.
-   
-
-#. Start Quartus programmer, click on Hardware Setup. In the "Currently selected hardware" window, select USB-Blaster.
-
-#. In the Mode combo box, select "Active Serial Programming".
-
-#. Plug the end of your USB-Blaster with the adaptor provided to the connector 'AS config' on the Gotthard board.
-
-#. Click on 'Add file'. Select programming (pof) file provided by us.
-
-#. Check "Program/Configure" and "Verify". Push the start button. Wait until the programming process is finished.
-
-#. In case of error messages, check the polarity of cable (that pin1 corresponds) and that the correct programming connector is selected.
-
-#. Reboot the detector.
-
-
 Mythen III
 -----------
 
@@ -257,7 +223,7 @@ Upgrade
 
     * 6.1.2 server has a fix for seamless fpga programming
 
-    * We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command 'updatedetectorserver' or 'copydetectorserver'.
+    * We recommend first updating the on-board detector server to 6.1.2 (with client 6.1.x) using command `updatedetectorserver <commandline.html#term-updatedetectorserver-server_name-with-full-path>`_.
 
     * Then use command 'programfpga' to only update firmware or use command 'update' to update firmware and server to the latest release.
 
@@ -396,7 +362,3 @@ How to get back mtd3 drive remotely (udpating kernel)
             more /proc/mtd # verify mtd3 is listed
             
 
-Last Resort using USB Blaster
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
-
-If none of these steps work, the last resort might be physically upgrading the firmware using a USB blaster, which also requires opening up the detector. Instructions for all the blackfin detectors are the same as the one for :ref:`gotthard firmware upgrade <firmware upgrade using blaster for blackfin>`.

docs/src/gendoc.cpp

@@ -11,7 +11,7 @@
 #include <string>
 #include <vector>
 
-#include "CmdProxy.h"
+#include "Caller.h"
 #include "sls/Detector.h"
 #include "sls/sls_detector_defs.h"
 
@@ -37,8 +37,8 @@ int main() {
 
     std::cout << "Generating command line documentation!\n";
 
-    sls::CmdProxy proxy(nullptr);
-    auto commands = proxy.GetProxyCommands();
+    sls::Caller caller(nullptr);
+    auto commands = caller.getAllCommands();
 
     std::ofstream fs("commands.rst");
     fs << ".. glossary::\n";
@@ -46,7 +46,7 @@ int main() {
     for (const auto &cmd : commands) {
         std::ostringstream os;
         std::cout << cmd << '\n';
-        proxy.Call(cmd, {}, -1, slsDetectorDefs::HELP_ACTION, os);
+        caller.call(cmd, {}, -1, slsDetectorDefs::HELP_ACTION, os);
 
         auto tmp = os.str().erase(0, cmd.size());
         auto usage = tmp.substr(0, tmp.find_first_of('\n'));
@@ -55,9 +55,9 @@ int main() {
         fs << '\t' << cmd << usage << help << "\n";
     }
 
-    std::ofstream fs2("depreciated.csv");
+    std::ofstream fs2("deprecated.csv");
     fs2 << "Old, New\n";
-    auto cmds = proxy.GetDepreciatedCommands();
+    auto cmds = caller.GetDeprecatedCommands();
     for (auto it : cmds) {
         fs2 << it.first << ", " << it.second << '\n';
     }

docs/src/hdf5fileformat.rst

@@ -0,0 +1,91 @@
+.. _hdf5 file format:
+
+HDF5 File Format
+================================
+
+Compilation
+-------------
+
+#. Compile the package with HDF5 option enabled
+
+    #. Using cmk script: ./cmk.sh -hj9 -d [path of hdf5 dir] (-d is optional and for custom installation folder)
+
+    #. Enable using cmake option **-DSLS_USE_HDF5=ON** and **-DCMAKE_INSTALL_PREFIX=/path/to/custom/hdf/installation** (optional).
+
+
+Setup
+-------
+
+#. Start Receiver process
+
+#. Load config file
+
+#. Set file format using command `fformat <commandline.html#term-fformat-binary-hdf5>`_.
+
+    .. code-block:: bash
+
+        sls_detector_put fformat hdf5
+
+
+Master File
+-------------
+
+* File Name: [fpath]/[fname]_master_[findex].h5 :ref:`Details here<file name format>`
+
+* It contains  :ref:`attributes<master file attributes>` relevant to the acquisition. This can vary with detector type.
+
+.. code-block:: text
+
+    /                                               # Root level
+    |---> entry                                     # entry group
+    |    |---> data                                 # data group
+    |         |---> column                          # dataset of each sls_receiver_header member
+    |         |---> data
+    |         |---> detector header version
+    |         |---> detector specific 1
+    |         |---> detector specific 2
+    |         |---> detector specific 3
+    |         |---> detector specific 4
+    |         |---> detector type
+    |         |---> exp length or sub exposure time
+    |         |---> frame number
+    |         |---> mod id
+    |         |---> packets caught
+    |         |---> packets caught bit mask
+    |         |---> row
+    |         |---> timestamp
+    |    |---> instrument                           # instrument group
+    |         |---> beam                            # beam group
+    |         |---> detector                        # detector group
+    |              |---> Master File Attribute 1    # dataset of each master file attribute
+    |              |---> Master File Attribute 2
+    |              |---> Master File Attribute 3
+    |              |---> Master File Attribute ..
+    |    |---> sample                               # sample group
+
+
+If more than 1 data file per frame:
+    * The dataset of each :ref:`**SLS Receiver Header** <sls receiver header format>` member is a virtual dataset.
+    * **data** dataset is a virtual dataset.
+
+
+More details regarding master file attributes can be found :ref:`here<master file attributes>`.
+
+Data File
+-----------
+
+* File Name: [fpath]/[fname]_dx_fy_[findex].h5 :ref:`Details here<file name format>`
+
+* More details on :ref:`slsReceiverHeader<sls receiver header format>` and the actual image data is described in the :ref:`Detector Image Size and Format <data format>` section.
+
+
+Virtual Data File
+------------------
+
+* File Name: [fpath]/[fname]_virtual_[findex].h5 :ref:`Details here<file name format>`
+
+* For multiple modules, a virtual file linking data from all the modules is created. The individual files are expected to be present.
+
+* It is linked in the master file.
+
+

docs/src/index.rst

@@ -12,12 +12,23 @@ Welcome to slsDetectorPackage's documentation!
     For further documentation, visit the official page: https://www.psi.ch/en/detectors/documentation
 
 .. toctree::
-    :maxdepth: 1
+    :maxdepth: 3
     :caption: Installation:
 
     installation
     dependencies
     consuming
+
+
+.. toctree::
+    :caption: how to
+    :maxdepth: 2
+
+    softwarearchitecture
+    configcommands
+    quick_start_guide
+    dataformat
+    multidet
    
 .. toctree::
     :caption: C++ API
@@ -28,6 +39,9 @@ Welcome to slsDetectorPackage's documentation!
     receiver_api
     examples
 
+
+
+    
 .. toctree::
     :caption: Python API
     :maxdepth: 2
@@ -36,13 +50,15 @@ Welcome to slsDetectorPackage's documentation!
     pydetector
     pyenums
     pyexamples
+    pyPatternGenerator
+    pattern
 
 .. toctree::
     :caption: Command line
-    :maxdepth: 2
+    :maxdepth: 1
 
     commandline  
-    quick_start_guide
+
 
 .. toctree::
     :caption: Developer
@@ -79,8 +95,26 @@ Welcome to slsDetectorPackage's documentation!
     :caption: Receiver
     :maxdepth: 2
 
-    receivers
     slsreceiver
+    receivers
+    
+
+.. toctree::
+    :caption: Receiver Files
+    :maxdepth: 3
+
+    fileformat
+    slsreceiverheaderformat
+    dataformat
+    masterfileattributes
+    binaryfileformat
+    hdf5fileformat
+
+.. toctree::
+    :caption: Receiver ZMQ Stream
+    :maxdepth: 2
+
+    zmqjsonheaderformat
 
 .. toctree::
     :caption: Troubleshooting

docs/src/installation.rst

@@ -1,9 +1,4 @@
-.. warning ::
-    
-    Before building from source make sure that you have the 
-    :doc:`dependencies <../dependencies>` installed. If installing using conda, conda will 
-    manage the dependencies. Avoid also installing packages with pip. 
-   
+
 
 .. _Installation:
 
@@ -11,18 +6,47 @@
 Installation
 ===============
 
-Install binaries using conda
--------------------------------
+.. contents::
+   :local:
+   :depth: 2
+   :backlinks: top
+
+
+Overview
+--------------
+
+The ``slsDetectorPackage`` provides core detector software implemented in C++, along with Python bindings packaged as the ``slsdet`` Python extension module. Choose the option that best fits your environment and use case.
+
+:ref:`conda pre-built binaries`: 
+Install pre-built binaries for the C++ client, receiver, GUI and the Python API (``slsdet``), simplifying setup across platforms.
+
+:ref:`pip`:
+Install only the Python extension module, either by downloading the pre-built library from PyPI or by building the extension locally from source. Available only from v9.2.0 onwards.
+
+:ref:`build from source`: 
+Compile the entire package yourself, including both the C++ core and the Python bindings, for maximum control and customization. However, make sure that you have the :doc:`dependencies <../dependencies>` installed. If installing using conda, conda will manage the dependencies. Avoid installing packages with pip and conda simultaneously.
+
+
+
+   
+.. _conda pre-built binaries:
+
+1. Install pre-built binaries using conda (Recommended)
+--------------------------------------------------------
 
 Conda is not only useful to manage python environments but can also
 be used as a user space package manager. Dates in the tag (for eg. 2020.07.23.dev0) 
 are from the developer branch. Please use released tags for stability.
 
-We have three different packages available:
-
-    * **slsdetlib** shared libraries and command line utilities 
-    * **slsdetgui** GUI
-    * **slsdet** Python bindings
+We have four different packages available:
+    ==============     =============================================
+    Package             Description
+    ==============     =============================================
+    slsdetlib           shared libraries and command line utilities 
+    slsdetgui           GUI
+    slsdet              Python bindings
+    moenchzmq           moench
+    ==============     =============================================
 
 .. code-block:: bash
 
@@ -38,7 +62,7 @@ We have three different packages available:
 
     #ready to use
     sls_detector_get exptime
-    etc ...
+    ...
 
 
 .. code-block:: bash
@@ -50,14 +74,33 @@ We have three different packages available:
     conda search slsdet
     # gui
     conda search slsdetgui
+    # moench
+    conda search moenchzmq
 
 
+.. _pip:
+
+2. Pip
+-------
+The Python extension module ``slsdet`` can be installed using pip. This is available from v9.2.0 onwards.
+
+.. code-block:: bash
+    
+    #Install the Python extension module from PyPI
+    pip install slsdet
+
+    # or install the python extension locally from source
+    git clone https://github.com/slsdetectorgroup/slsDetectorPackage.git --branch 9.2.0
+    cd slsDetectorPackage
+    pip install .
 
 
-Build from source
--------------------
+.. _build from source:
 
-1. Download Source Code from github
+3. Build from source
+-------------------------
+
+3.1. Download Source Code from github
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 .. code-block:: bash
@@ -72,28 +115,53 @@ Build from source
 
 
 
-2. Build from Source
+3.2. Build from Source
 ^^^^^^^^^^^^^^^^^^^^^^^^^^
 
-Build using CMake
-^^^^^^^^^^^^^^^^^^^^^^
+One can either build using cmake or use the in-built cmk.sh script.
+
+3.2.1. Build using CMake
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
 
 .. code-block:: bash
 
     # outside slsDetecorPackage folder
     mkdir build && cd build
 
-    # configure & generate Makefiles using cmake
-    # by listing all your options (alternately use ccmake described below)
-    # cmake3 for some systems
-    cmake ../slsDetectorPackage -DCMAKE_INSTALL_PREFIX=/your/install/path
+    # configure & generate Makefiles using cmake by listing all your options 
+    # (alternately use ccmake described below)
+    # cmake3 instead of cmake for some systems
+    
+    # eg. enable gui option (without conda)
+    cmake ../slsDetectorPacakge -DSLS_USE_GUI=ON
+    # eg. enable python from virtual env, hdf5 and simulator options
+    cmake ../slsDetectorPackage -DSLS_USE_PYTHON=ON -DPython_FIND_VIRTUALENV=ONLY -DSLS_USE_HDF5=ON -DSLS_USE_SIMULATOR=ON
 
     # compiled to the build/bin directory
     make -j12 #or whatever number of cores you are using to build
 
+
+To install in a clean custom directory and to use the slsDetectorPackage 
+libraries and headers in your project, specify the install directory 
+(eg. /your/install/path). 
+
+.. code-block:: bash
+
+    # outside slsDetecorPackage folder
+    mkdir build && cd build
+    # configure & generate Makefiles
+    cmake ../slsDetectorPackage -DCMAKE_INSTALL_PREFIX=/your/install/path
+    # compile
+    make -j12
     # install headers and libs in /your/install/path directory
     make install
 
+.. note ::   
+
+    Please refer to `api examples <https://github.com/slsdetectorgroup/api-examples>`__ 
+    on how to compile your project using the installed headers and libs.
+    
 
 Instead of the cmake command, one can use ccmake to get a list of options to configure and generate Makefiles at ease.
 
@@ -103,7 +171,7 @@ Instead of the cmake command, one can use ccmake to get a list of options to con
     ccmake ..
  
     # choose the options
-    # first press [c] - configure (maybe multiple times till you see [g])
+    # first press [c] - configure (until you see [g])
     # then press [g] - generate
 
 
@@ -122,8 +190,8 @@ Example cmake options               Comment
     For v7.x.x of slsDetectorPackage and older, refer :ref:`zeromq notes for cmake option to hint library location. <zeromq for different slsDetectorPackage versions>` 
 
 
-Build using in-built cmk.sh script
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+3.2.2. Build using in-built cmk.sh script
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 
 .. code-block:: bash
@@ -172,10 +240,10 @@ Build using in-built cmk.sh script
     For v7.x.x of slsDetectorPackage and older, refer :ref:`zeromq notes for cmk script option to hint library location. <zeromq for different slsDetectorPackage versions>` 
 
 
-Build on old distributions
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+3.3. Build on old distributions using conda
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
-If your linux distribution doesn't come with a C++11 compiler (gcc>4.8) then 
+If your linux distribution doesn't come with a C++17 compiler (gcc>8) then 
 it's possible to install a newer gcc using conda and build the slsDetectorPackage
 using this compiler
 
@@ -197,10 +265,11 @@ using this compiler
 
 
 
-Build slsDetectorGui (Qt5)
-^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+3.4. Build slsDetectorGui (Qt5)
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 1. Using pre-built binary on conda
+
     .. code-block:: bash
 
         conda create -n myenv slsdetgui=7.0.0
@@ -208,13 +277,22 @@ Build slsDetectorGui (Qt5)
 
 
 2. Using system installation on RHEL7
+
     .. code-block:: bash
 
         yum install qt5-qtbase-devel.x86_64
         yum install qt5-qtsvg-devel.x86_64 
 
+3. Using system installation on RHEL8
+
+    .. code-block:: bash
+
+        yum install qt5-qtbase-devel.x86_64
+        yum install qt5-qtsvg-devel.x86_64 
+        yum install expat-devel.x86_64
+
+4. Using conda
 
-3. Using conda
     .. code-block:: bash
 
         #Add channels for dependencies and our library
@@ -248,8 +326,8 @@ Build slsDetectorGui (Qt5)
 
 
 
-Build this documentation
-^^^^^^^^^^^^^^^^^^^^^^^^
+3.5. Build this documentation
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
 The documentation for the slsDetectorPackage is build using a combination 
 of Doxygen, Sphinx and Breathe. The easiest way to install the dependencies
@@ -271,17 +349,19 @@ is to use conda
     make rst # rst only, saves time in case the API did not change
 
 
-Pybind and Zeromq
-^^^^^^^^^^^^^^^^^^^
+4. Pybind and Zeromq
+-------------------------
 
 .. _pybind for different slsDetectorPackage versions:
 
 
-| **Pybind for Python**
-| v8.0.0+:
-|   pybind11 (v2.11.0) is built 
-|   * by default from tar file in repo (libs/pybind/v2.11.0.tar.gz) 
+| **Pybind11 for Python**
+| v8.0.0+: 
+|   pybind11 is built
+|   * by default from tar file in repo (libs/pybind/v2.1x.0.tar.gz) 
 |   * or use advanced option SLS_FETCH_PYBIND11_FROM_GITHUB [`link <https://github.com/pybind/pybind11>`__].
+|      * v9.0.0+: pybind11 (v2.13.6)
+|      * v8.x.x : pybind11 (v2.11.0)
 |
 | v7.x.x:
 |   pybind11 packaged into 'libs/pybind'. No longer a submodule. No need for "recursive" or "submodule update".
@@ -312,7 +392,7 @@ Pybind and Zeromq
 |   * or use advanced option SLS_FETCH_ZMQ_FROM_GITHUB [`link <https://github.com/zeromq/libzmq.git>`__].
 |
 | v7.x.x and older:
-|   zeromq must be installed and one can hint its location using
+|   zeromq-devel must be installed and one can hint its location using
 |   * cmake option:'-DZeroMQ_HINT=/usr/lib64' or 
 |   * option '-q' in cmk.sh script: : ./cmk.sh -cbj5 -q /usr/lib64
 |   * 'zeromq' dependency added when installing using conda

docs/src/masterfileattributes.rst

@@ -0,0 +1,362 @@
+
+.. _master file attributes:
+
+Master File Attributes
+=======================
+
+These attributes are the same in binary and HDF5 file, but vary depending on detector type.
+
+
+Eiger
+^^^^^
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Dynamic Range         | Bits per pixel                                  |
+   +-----------------------+-------------------------------------------------+
+   | Ten Giga              | 10GbE enable for data                           |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Threshold Energy      | Threshold energy                                |
+   +-----------------------+-------------------------------------------------+
+   | Sub Exptime           | Sub exposure time in 32 bit mode                |
+   +-----------------------+-------------------------------------------------+
+   | Sub Period            | Sub period between frames in 32 bit mode        |
+   +-----------------------+-------------------------------------------------+
+   | Quad                  | Quad enable (hardware)                          |
+   +-----------------------+-------------------------------------------------+
+   | Number of rows        | Number of rows enabled for readout              |
+   +-----------------------+-------------------------------------------------+
+   | Rate Corrections      | Rate Corrections                                |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+
+Jungfrau
+^^^^^^^^
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Number of UDP         | Number of UDP Interfaces enabled per module     |
+   | Interfaces            |                                                 |
+   +-----------------------+-------------------------------------------------+
+   | Number of rows        | Number of rows enabled for readout              |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+Gotthard II
+^^^^^^^^^^^^
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Burst Mode            | Burst mode of detector                          |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+Mythen3
+^^^^^^^
+
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Dynamic Range         | Bits per pixel                                  |
+   +-----------------------+-------------------------------------------------+
+   | Ten Giga              | 10GbE enable for data                           |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Counter Mask          | Mask of counters enabled                        |
+   +-----------------------+-------------------------------------------------+
+   | Exptime1              | Exposure time of counter 1                      |
+   +-----------------------+-------------------------------------------------+
+   | Exptime2              | Exposure time of counter 2                      |
+   +-----------------------+-------------------------------------------------+
+   | Exptime3              | Exposure time of counter 3                      |
+   +-----------------------+-------------------------------------------------+
+   | GateDelay1            | Gate delay of counter 1                         |
+   +-----------------------+-------------------------------------------------+
+   | GateDelay2            | Gate delay of counter 2                         |
+   +-----------------------+-------------------------------------------------+
+   | GateDelay3            | Gate delay of counter 3                         |
+   +-----------------------+-------------------------------------------------+
+   | Gates                 | Number of gates                                 |
+   +-----------------------+-------------------------------------------------+
+   | Threshold energies    | Threshold energy of all 3 counters              |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+
+Moench
+^^^^^^
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Number of UDP         | Number of UDP Interfaces enabled per module     |
+   | Interfaces            |                                                 |
+   +-----------------------+-------------------------------------------------+
+   | Number of rows        | Number of rows enabled for readout              |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+
+
+
+Chip Test Board
+^^^^^^^^^^^^^^^
+
+
+   +-----------------------+-------------------------------------------------+
+   | **Key**               | **Description**                                 |
+   +-----------------------+-------------------------------------------------+
+   | Version               | Version of the master file                      |
+   |                       | Current value:8.0                               |
+   +-----------------------+-------------------------------------------------+
+   | Timestamp             | Timestamp of creation of master file            |
+   +-----------------------+-------------------------------------------------+
+   | Detector Type         | Detector type                                   |
+   +-----------------------+-------------------------------------------------+
+   | Timing Mode           | Timing Mode                                     |
+   +-----------------------+-------------------------------------------------+
+   | Geometry              | Number of UDP ports in x and y dimension for    |
+   |                       | complete detector                               |
+   +-----------------------+-------------------------------------------------+
+   | Image Size in bytes   | Image size in bytes per UDP port                |
+   +-----------------------+-------------------------------------------------+
+   | Pixels                | Number of pixels in x and y dimension           |
+   |                       | per UDP port                                    |
+   +-----------------------+-------------------------------------------------+
+   | Max Frames Per File   | Maximum frames per file                         |
+   +-----------------------+-------------------------------------------------+
+   | Frame Discard Policy  | Receiever Frame discard policy                  |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Frame Padding         | Receiver Frame padding enable                   |
+   |                       | for partial frames                              |
+   +-----------------------+-------------------------------------------------+
+   | Scan Parameters       | Scanning mode on detector                       |
+   +-----------------------+-------------------------------------------------+
+   | Total Frames          | Total number of frames and triggers expected    |
+   +-----------------------+-------------------------------------------------+
+   | Receiver Roi          | Receiver ROI in file including xmax and ymax    |
+   +-----------------------+-------------------------------------------------+
+   | Exptime               | Exposure time                                   |
+   +-----------------------+-------------------------------------------------+
+   | Period                | Period between frames                           |
+   +-----------------------+-------------------------------------------------+
+   | Ten Giga              | Ten giga enable                                 |
+   +-----------------------+-------------------------------------------------+
+   | ADC Mask              | Mask of channels enabled in ADC                 |
+   +-----------------------+-------------------------------------------------+
+   | Analog Flag           | Analog readout enable                           |
+   +-----------------------+-------------------------------------------------+
+   | Analog Samples        | Number of analog samples                        |
+   +-----------------------+-------------------------------------------------+
+   | Digital Flag          | Digital readout enable                          |
+   +-----------------------+-------------------------------------------------+
+   | Digital Samples       | Number of digital samples                       |
+   +-----------------------+-------------------------------------------------+
+   | Dbit Offset           | Digital offset of valid data in bytes           |
+   +-----------------------+-------------------------------------------------+
+   | Dbit Reorder          | Reorder such that it groups each signal (0-63)  |
+   |                       | from all the different samples together         |                 
+   +-----------------------+-------------------------------------------------+
+   | Dbit Bitset           | Digital 64 bit mask of bits enabled in receiver |
+   +-----------------------+-------------------------------------------------+
+   | Transceiver Mask      | Mask of channels enabled in Transceiver         |
+   +-----------------------+-------------------------------------------------+
+   | Transceiver Flag      | Transceiver readout enable                      |
+   +-----------------------+-------------------------------------------------+
+   | Transceiver Samples   | Number of transceiver samples                   |
+   +-----------------------+-------------------------------------------------+
+   | Frames in File        | Number of frames written to file by Receiver 0  |
+   +-----------------------+-------------------------------------------------+
+   | Frame Header Format   | Expected frame header format for the data files |
+   +-----------------------+-------------------------------------------------+

docs/src/multidet.rst

@@ -0,0 +1,230 @@
+.. _using multiple detectors:
+
+Using multiple detectors
+==========================
+
+The slsDetectorPackage supports using several detectors on the same computer.
+This can either be two users, that need to use the same computer without interfering
+with each other, or the same user that wants to use multiple detectors at the same time.
+The detectors in turn can consist of multiple modules. For example, a 9M Jungfrau detector
+consists of 18 modules which typically are addressed at once as a single detector.
+
+.. note ::
+
+    To address a single module of a multi-module detector you can use the module index. 
+    
+    - Command line: :ref:`cl-module-index-label`
+    - Python: :ref:`py-module-index-label`
+
+
+Coming back to multiple detectors we have two tools to our disposal:
+
+#. Detector index 
+#. The SLSDETNAME environment variable
+
+They can be used together or separately depending on the use case.
+
+Detector index
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+When configuring a detector you can specify a detector index. The default is 0. 
+
+**Command line**
+
+.. code-block:: bash
+
+    # Given that we have two detectors (my-det and my-det2) that we want to use,
+    # we can configure them with different indices.
+
+    # Configure the first detector with index 0
+    $ sls_detector_put hostname my-det
+    
+    # Set number of frames for detector 0 to 10
+    $ sls_detector_put frames 10
+
+
+    # 
+    #Configure the second detector with index 1 (notice the 1- before hostname)
+    $ sls_detector_put 1-hostname my-det2
+    
+
+    # Further configuration
+    ...
+
+    # Set number of frames for detector 1 to 19
+    $ sls_detector_put 1-frames 19
+
+    # Note that if we call sls_detector_get without specifying the index,
+    # it will return the configuration of detector 0
+    $ sls_detector_get frames
+    10
+
+The detector index is added to the name of the shared memory segment, so in this case
+the shared memory segments would be:
+
+.. code-block:: bash
+
+
+    #First detector
+    /dev/shm/slsDetectorPackage_detector_0
+    /dev/shm/slsDetectorPackage_detector_0_module_0
+
+    #Second detector
+    /dev/shm/slsDetectorPackage_detector_1
+    /dev/shm/slsDetectorPackage_detector_1_module_0
+
+
+**Python**
+
+The main difference between the command line and the Python API is that you set the index
+when you create the detector object and you don't have to repeat it for every call.
+
+The C++ API works int the same way. 
+
+.. code-block:: python
+
+    from slsdet import Detector
+    
+
+    # The same can be achieved in Python by creating a detector object with an index.
+    # Again we have two detectors (my-det and my-det2) that we want to use:
+
+    # Configure detector with index 0
+    d = Detector()
+
+    # If the detector has already been configured and has a shared memory
+    # segment, you can omit setting the hostname again
+    d.hostname = 'my-det'
+
+    #Further configuration
+    ...
+
+    # Configure a second detector with index 1
+    d2 = Detector(1)
+    d2.hostname = 'my-det2'
+   
+    d.frames = 10
+    d2.frames = 19
+ 
+
+$SLSDETNAME
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+To avoid interfering with other users on shared PCs it is best to always set the SLSDETNAME environmental variable.
+Imagining a fictive user: Anna, we can set SLSDETNAME from the shell before configuring the detector:
+
+**Command line**
+
+.. code-block:: bash
+
+    # Set the SLSDETNAME variable
+    $ export SLSDETNAME=Anna
+
+    # You can check that it is set
+    $ echo $SLSDETNAME
+    Anna
+
+    # Now configures a detector with index 0 and prefixed with the name Anna
+    # /dev/shm/slsDetectorPackage_detector_0_Anna
+    $ sls_detector_put hostname my-det
+
+
+.. tip ::
+
+    Set SLSDETNAME in your .bashrc in order to not forget it when opening a new terminal.
+
+
+**Python**
+
+With python the best way is to set the SLSDETNAME from the command line before starting the python interpreter.
+
+Bash:
+
+.. code-block:: bash
+
+    $ export SLSDETNAME=Anna
+
+Python:
+
+.. code-block:: python
+
+    from slsdet import Detector
+    
+    # Now configures a detector with index 0 and prefixed with the name Anna
+    # /dev/shm/slsDetectorPackage_detector_0_Anna
+    d = Detector()
+    d.hostname = 'my-det'
+
+You can also set SLSDETNAME from within the Python interpreter, but you have to be aware that it will only
+affect the current process and not the whole shell session.
+
+.. code-block:: python
+
+    import os
+    os.environ['SLSDETNAME'] = 'Anna'
+
+    # You can check that it is set
+    print(os.environ['SLSDETNAME'])  # Output: Anna
+
+    #Now SLSDETNAME is set to Anna but as soon as you exit the python interpreter
+    # it will not be set anymore
+
+.. note ::
+
+    Python has two ways of reading environment variables: `**os.environ**` as shown above which throws a
+    KeyError if the variable is not set and `os.getenv('SLSDETNAME')` which returns None if the variable is not set.
+
+    For more details see the official python documentation on: https://docs.python.org/3/library/os.html#os.environ
+
+
+Checking for other detectors
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+If using shared accounts on a shared computer (which you anyway should not do), it is good practice to check
+if there are other detectors configured by other users before configuring your own detector.
+
+You can do this by listing the files in the shared memory directory `/dev/shm/` that start with `sls`. In this
+example we can see that two single module detectors are configured one with index 0 and one with index 1.
+SLSDETNAME is set to `Anna` so it makes sense to assume that she is the user that configured these detectors.
+
+
+.. code-block:: bash
+
+    # List the files in /dev/shm that starts with sls
+    $ ls /dev/shm/sls*
+    /dev/shm/slsDetectorPackage_detector_0_Anna
+    /dev/shm/slsDetectorPackage_detector_0_module_0_Anna
+    /dev/shm/slsDetectorPackage_detector_1_Anna
+    /dev/shm/slsDetectorPackage_detector_1_module_0_Anna
+
+We also provide a command: user, which gets information about the shared memory segment that
+the client points to without doing any changes. 
+
+.. code-block:: bash
+
+    #in this case 3 simulated Mythen3 modules
+    $ sls_detector_get user
+    user 
+    Hostname: localhost+localhost+localhost+
+    Type: Mythen3
+    PID: 1226078
+    User: l_msdetect
+    Date: Mon Jun  2 05:46:20 PM CEST 2025
+
+
+Other considerations
+^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
+
+The shared memory is not the only way to interfere with other users. You also need to make sure that you are not
+using the same:
+
+* rx_tcpport
+* Unique combination of udp_dstip and udp_dstport
+* rx_zmqport
+* zmqport
+
+.. attention ::
+
+    The computer that you are using need to have enough resources to run multiple detectors at the same time.
+    This includes CPU and network bandwidth. Please coordinate with the other users!
+

docs/src/pattern.rst

@@ -0,0 +1,122 @@
+Pattern
+========================
+
+This is a test and development feature implemented only for Ctb, Xilinx_Ctb and Mythen3.
+
+A pattern is a sequence of 64-bit words which is executed using a clock on the FPGA. Each of the 64 bits is connected to a pin or internal signal of the FPGA. The purpose of a pattern is to provide a way to change these 64 signals with precise timing. Commands run by the detector server could manipulate the same signals as the pattern, but they cannot enforce a change in a specific clock cycle.
+
+**Usage**
+
+A pattern is written to memory on the FPGA using the patword command.
+
+.. code-block::
+
+   patword 0x0000 0x000000000000000A
+   patword 0x0001 0x000000000000000B
+   patword 0x0002 0x000000000000000C
+   patword 0x0003 0x000000000000000D
+   patword 0x0004 0x000000000000000E
+
+The example above writes a five-word pattern into FPGA memory. The first argument is the memory address, the second argument is the content to be written into this address. Before executing a pattern one has to set the address limits of the pattern:
+
+.. code-block::
+
+   patlimits 0x0000 0x0004
+
+This instructs the firmware to execute the commands from address 0 to 4 (including 0 and 4). The execution can be started from the pyctbgui or with the commands
+
+.. code-block::
+
+   start [Ctb, Xilinx_Ctb]
+   patternstart [Mythen3]
+
+The maximal number of patword addresses is 8192. However, it is possible to extend the length of the pattern sequence using loops and wait commands. Loops can be configured with the following commands:
+
+.. code-block::
+
+   patloop 0 0x0001 0x0003
+   patnloop 0 7
+
+The first argument of both commands is the ID of the loop. Ctb and Xilinx_Ctb can have 6 loops (ID 0-5), Mythen3 can have 4 loop definitions. The commands above configure the loop with ID 0 to run 7 times and jump from the patword with address 3 to the patword with address 1. Important: If patnloop is set to 1, the addresses 0x1-0x3 will execute exactly once; if it is set to 0, the pattern addresses will be skipped.
+
+The same idea is used to introduce wait times. The example below causes the patword at address 0x0002 to be active for 9 clock cycles before the execution continues.
+
+.. code-block::
+
+   patwait 0 0x0002
+   patwaittime 0 9
+
+Waits can be placed inside a loop and loops can be nested.
+
+**patioctrl**
+
+The function of each bit in the sequence of 64-bit words depends on the connected detector and firmware version. Some of the 64 bits might connect directly to pads of a chip. The patioctrl command is used to configure the direction of some of these signals (not all of them !! See tables below). Signals where the corresponding bit in the argument of patioctrl is set to 1 will be driven from the FPGA.
+
+**patsetbit and patmask**
+
+The functions patsetbit and patmask can be used to ignore a specific bit of the pattern.
+Example:
+
+.. code-block::
+
+   patmask 0x0101
+   patsetbit 0x0001
+
+Patmask configures bit 0 and 8 of the pattern to be set to their value in patsetbit. These bits will be ignored during pattern execution and will always be 0 (bit 8) and 1 (bit 0).
+
+The mappings of bit positions in the pattern word to signals/pads of the FPGA are listed below for the three detector types where patterns are used. In the case of the two CTB's, connections of the signals to actual pads of a chip depend on the layout of the used detector adapter board. Therefore, each type of detector adapter board adds an additional mapping layer.
+
+**CTB Pattern Bit Mapping**
+
+.. table:: 
+
+   +----+---+------+----+----------+-------------------+----------------+
+   | 63 | 62| 61-57| 56 |  55-48   |  47-32            |  31-0          |
+   +----+---+------+----+----------+-------------------+----------------+
+   |  A |  D|  --- |  T | EXTIO    | DO, stream source | DIO            |
+   +----+---+------+----+----------+-------------------+----------------+
+
+DIO: Driving the 32 FPGA pins corresponding to the lowest 32 bits of the patioctrl command. If bits in patioctrl are 0, the same bit positions in DIO will switch to input pins and connect to dbit sampling. Additionally, some of these 32 bits have an automatic override by detector-specific statemachines which is active whenever one of these statemachines is running (currently bits 7,8,11,14 and 20).
+
+DO: Directly connected to 16 FPGA pins. Output only. Not influenced by patioctrl. Also connected to bit 47-32 in all Ctb dbit samples. All of them can be used as dbit sample trigger. In addition, every bit of DO can be selected as trigger for sending out a udp packet with samples to the receiver.
+
+EXTIO: Similar to DIO, but not used as input to the fpga. With the corresponding patioctrl bits set to 0 these pins will switch to a high impedance mode and be ignored by the firmware.
+
+T: trigger output
+
+D: enable signal for digital sampling
+
+A: adc enable
+
+**Xilinx_CTB Pattern Bit Mapping**
+
+.. table:: 
+
+   +-------+----------------+
+   | 63-32 |  31-0          |
+   +-------+----------------+
+   |  ---  | DIO            |
+   +-------+----------------+
+
+DIO: Driving the 32 FPGA pins corresponding to the lowest 32 bits of the patioctrl command. If bits in patioctrl are 0, the same bit positions in DIO will switch to input pins and connect to dbit sampling. Additionally, some of these 32 bits have an automatic override by detector-specific statemachines which is active whenever these sm's are running (currently bits 7,8,11,14 and 20).
+
+
+**Mythen3 Pattern Bit Mapping**
+
+.. table:: 
+
+   +-------+--------+-------+--------+------------+----------+----------+-----+-----+
+   | 63-33 |  32    | 31-25 |  24    | 23         |  22      | 21       | 20  | 19  |
+   +-------+--------+-------+--------+------------+----------+----------+-----+-----+
+   |  ---  | signARD|  ---  | CHSclk |  cnt_rst   |  sto_rst | STATLOAD | STO | SIN |
+   +-------+--------+-------+--------+------------+----------+----------+-----+-----+
+
+.. table:: 
+
+   +---------+-----+-------+-------+----+-------+---------+--------+
+   | 18      | 17  | 16-14 | 13    | 12 | 11    | 10      | 9-0    |
+   +---------+-----+-------+-------+----+-------+---------+--------+
+   | SR_MODE | clk | EN    | PULSE | RD | CHSIN | ANAMode | TBLOAD |
+   +---------+-----+-------+-------+----+-------+---------+--------+
+
+For Mythen3 the pattern word only connects to output pins of the FPGA when the pattern is running. Afterwards the signals will switch back to other logic in the FPGA. Both CTB's hold the last executed pattern word until a new pattern is started.

docs/src/pyPatternGenerator.rst

@@ -0,0 +1,34 @@
+PatternGenerator
+=====================================================
+
+Python class to generate patterns for the Chip Test Board.
+
+.. code-block:: python
+
+    from slsdet import PatternGenerator
+
+    p = PatternGenerator()
+    p.SB(5)
+    p.PW()
+    p.SB(8,9)
+    p.PW()
+    p.CB(5)
+
+Created a pattern like this:
+
+.. code-block:: bash
+
+    patword 0x0000 0x0000000000000020
+    patword 0x0001 0x0000000000000320
+    patword 0x0002 0x0000000000000300
+    patioctrl 0x0000000000000000
+    patlimits 0x0000 0x0002
+    ...
+
+.. py:currentmodule:: slsdet
+
+.. autoclass:: PatternGenerator
+    :members:  
+    :undoc-members:
+    :show-inheritance:
+    :inherited-members:

docs/src/pygettingstarted.rst

@@ -6,7 +6,7 @@ Getting Started
 Which Python?  
 --------------------
 
-We require at least Python 3.6 and strongly recommended that you don't use the system
+We require at least Python 3.8 and strongly recommended that you don't use the system
 Python installation. The examples in this documentation uses `conda
 <https://docs.conda.io/en/latest/miniconda.html>`_ since it provides good support
 also for non Python packages but there are also other alternatives like, pyenv. 
@@ -123,6 +123,47 @@ in a large detector.
     # Set exposure time for module 1, 5 and 7
     d.setExptime(0.1, [1,5,7])
 
+
+
+.. _py-module-index-label:
+
+----------------------------------
+Accessing individual modules
+----------------------------------
+
+Using the C++ like API you can access individual modules in a large detector
+by passing in the module index as an argument to the function.
+
+::
+    
+    # Read the UDP destination port for all modules
+    >>> d.getDestinationUDPPort()
+    [50001, 50002, 50003]
+
+
+    # Read it for module 0 and 1
+    >>> d.getDestinationUDPPort([0, 1])
+    [50001, 50002]
+
+    >>> d.setDestinationUDPPort(50010, 1)
+    >>> d.getDestinationUDPPort()
+    [50001, 50010, 50003]
+
+From the more pythonic API there is no way to read from only one module but you can read 
+and then use list slicing to get the values for the modules you are interested in.
+
+::
+
+    >>> d.udp_dstport
+    [50001, 50010, 50003]
+    >>> d.udp_dstport[0]
+    50001
+
+    #For some but not all properties you can also pass in a dictionary with module index as key
+    >>> ip = IpAddr('127.0.0.1')
+    >>> d.udp_dstip = {1:ip}
+
+
 --------------------
 Finding functions 
 --------------------

docs/src/quick_start_guide.rst

@@ -19,14 +19,14 @@ For a Single Module
         slsReceiver
 
         # custom port 2012
-        slsReceiver -t2012
+        slsReceiver -p 2012
 
 
 For Multiple Modules
     .. code-block:: bash  
 
-        # slsMultiReceiver [starting port] [number of receivers] [print each frame header for debugging]
-        slsMultiReceiver 2012 2 0 
+        # slsMultiReceiver [-p: starting port, -n: number of receivers]
+        slsMultiReceiver -p 2012 -n 2 
 
 
 Client
@@ -128,6 +128,31 @@ For Multiple Modules
         # set file path
         fpath /tmp
 
+.. note ::   
+    The **hostname** and **detsize** command in a multi module system can affect the row and column values in the udp/zmq header. The modules are stacked row by row until they reach the y-axis limit set by detsize (if specified). Then, stacking continues in the next column and so on. 
+
+
+
+
+
+Data
+-----
+
+Check out the :ref:`UDP header section<detector udp header>` for details on output UDP header data format.`
+
+Check out the :ref:`Detector image size and format section<data format>`  for details on output data format.
+
+
+Receiver
+---------
+
+When using `slsReceiver`, `slsMultiReceiver` or `slsFrameSynchronizer`, check out the following sections:
+
+ - :ref:`File format<file format>`
+ - :ref:`slsReceiver header format<sls receiver header format>`
+ - :ref:`Master file attributes<master file attributes>`
+
+    
 Gui
 ----
 

docs/src/receivers.rst

@@ -1,25 +1,25 @@
-Receivers
+Custom Receiver
 =================
 
-Receiver processes can be run on same or different machines as the client, receives the data from the detector (via UDP packets).
-When using the slsReceiver/ slsMultiReceiver, they can be further configured by the client control software (via TCP/IP) to set file name, file path, progress of acquisition etc.
+The receiver essentially listens to UDP data packets sent out by the detector.
+
+To know more about detector receiver setup in the config file, please check out :ref:`the detector-receiver UDP configuration in the config file<detector udp header config>` and the :ref:`detector udp format<detector udp header>`.
 
 
-To know more about detector receiver configuration, please check out :ref:`detector udp header and udp commands in the config file <detector udp header>`
+| Please note the following when using a custom receiver:
 
-Custom Receiver
-----------------
+* **udp_dstmac** must be configured in the config file. This parameter is not required when using an in-built receiver.
 
-| When using  custom receiver with our package, ensure that **udp_dstmac** is also configured in the config file. This parameter is not required when using slsReceiver.
+* Cannot use "auto" for **udp_dstip**.
 
-| Cannot use "auto" for **udp_dstip**.
+* No **rx_** commands in the config file. These commands are for configuring the slsReceiver.
 
-| Also ensure that there are no **rx_** commands in the config file. These commands are for configuring the slsReceiver.
+
+
+The main difference is the lack of **rx_** commands or file commands (eg. **f**write, **f**path) and the **udp_dstmac** is required in config file.
 
 Example of a custom receiver config file
 
-* The main difference is the lack of **rx_** commands or file commands (eg. fwrite, fpath) and the udp_dstmac is required in config file.
-
 .. code-block:: bash
 
     # detector hostname

docs/src/serverdefaults.rst

@@ -89,18 +89,3 @@ DACS
    :widths: 35, 35
    :header-rows: 1
 
-Gotthard
--------------
-
-.. csv-table:: Default values
-   :file: gotthard.csv
-   :widths: 35, 35
-   :header-rows: 1
-
-DACS
-^^^^^^^^^^^^^
-
-.. csv-table:: Gotthard DACS
-   :file: gotthard-dacs.csv
-   :widths: 35, 35
-   :header-rows: 1

docs/src/servers.rst

@@ -1,3 +1,5 @@
+.. _detector_servers:
+
 Getting Started
 ===============
 
@@ -27,25 +29,24 @@ Arguments
          -p, --port <port>        : TCP communication port with client. 
          -g, --nomodule           : [Mythen3][Gotthard2] 
                                     Generic or No Module mode. Skips detector type checks. 
-         -f, --phaseshift <value> : [Gotthard] only. Sets phase shift. 
          -d, --devel              : Developer mode. Skips firmware checks. 
          -u, --update             : Update mode. Skips firmware checks and initial detector setup. 
-         -i, --ignore-config      : [Eiger][Jungfrau][Gotthard][Gotthard2][Moench] 
+         -i, --ignore-config      : [Eiger][Jungfrau][Gotthard2][Moench] 
                                     Ignore config file. 
-         -m, --master <master>    : [Eiger][Mythen3][Gotthard][Gotthard2] 
+         -m, --master <master>    : [Eiger][Mythen3][Gotthard2] 
                                     Set Master to 0 or 1. Precedence over config file. Only for virtual servers except Eiger. 
          -t, --top <top>          : [Eiger] Set Top to 0 or 1. Precedence over config file. 
          -s, --stopserver         : Stop server. Do not use as it is created by control server 
 
 
 .. _Automatic start servers:
+
 Automatic start 
 ------------------
 
 One can start the on-board detector server automatically upon powering on the board.
 
-#. Create a soft link to the binary on board 
-   :
+#. Create a soft link to the binary on board:
       .. code-block:: bash
       
          ln -sf someDetectorServervx.x.x someDetectorServer
@@ -65,7 +66,7 @@ One can start the on-board detector server automatically upon powering on the bo
          /home/root/executables/eigerDetectorServer &> /dev/null &
          exit 0
 
-   Jungfrau | Moench | CTB | Gotthard I
+   Jungfrau | Moench | CTB
       .. code-block:: bash
 
          # Edit inittab on board
@@ -87,8 +88,7 @@ One can start the on-board detector server automatically upon powering on the bo
          /root/xxxDetectorServer >> /dev/null &
 
 
-#. Sync, reboot and verify
-   :
+#. Sync, reboot and verify:
       .. code-block:: bash
       
          sync