151 Commits

Author	SHA1	Message	Date
mazzol_a	f54e76e6bf	view is only allowed on l-value frame (#220) ... Vadym accidentally called view() directly on an R-value frame, which leads to a dangling view pointer. Adjusted code such that compiler throws an error if called on an R-value frame. Co-authored-by: Erik Fröjdh <erik.frojdh@psi.ch>	2025-08-18 11:02:05 +02:00
JFMulvey	c6da36d10b	Fixed the order of cluster.data being incorrect (#221) ... While using the cluster finder and saving a cluster, pixels which are out of bounds are skipped. cluster.data should contain the pedestal corrected ADU information of each pixel. However, the counter "i" which keeps track of the position of cluster.data is only incremented if the pixel was inside the bounds of the frame. This means that any clusters close to the frame's edges are not construed properly. This means that if you want to extract a 3x3 from a 9x9 cluster, it can fail if the cluster data is not properly centered in the pixel. Fixed by moving i++ outside the bounds check. Co-authored-by: Jonathan Mulvey <jonathan.mulvey@psi.ch>	2025-08-14 09:27:02 +02:00
froejdh_e	89bb8776ea	check Ndim on drop_first_dim	2025-07-25 11:44:27 +02:00
froejdh_e	3d6858ad33	removed data_ref	2025-07-25 10:42:47 +02:00
froejdh_e	d6222027d0	move constructor for Ndim-1	2025-07-25 10:40:32 +02:00
mazzol_a	1347158235	templated calculate_pedestal with boolean template argument only_gain0, added drop_dimension to NDArray and reference pointer to data	2025-07-24 15:40:05 +02:00
froejdh_e	b8e91d0282	zero out switching pixels if 2D calibration is used	2025-07-24 12:10:13 +02:00
froejdh_e	46876bfa73	reduced duplicate code	2025-07-24 10:57:02 +02:00
froejdh_e	348fd0f937	removed unused code	2025-07-24 10:14:29 +02:00
froejdh_e	0fea0f5b0e	added safe_divide to NDArray and used it for pedestal	2025-07-24 09:40:38 +02:00
froejdh_e	9a7713e98a	added g0 calibration, pedestal and pixel counting	2025-07-22 16:42:09 +02:00
Erik Fröjdh	abae2674a9	Apply calibration to Jungfrau raw data (#216) ... - Added function to read calibration file - Multi threaded pedestal subtraction and application of the calibration	2025-07-18 10:19:14 +02:00
Erik Fröjdh	97dae4ac60	added empty() to ClusterVector and fixed docs (#209) ... - added ClusterVector::empty() to check if the vector is empty - Fixed generation of missing docs for ClusterVector	2025-06-27 17:00:46 +02:00
Erik Fröjdh	e3f4b34b72	Const element access and fixed comparing bug (#208) ... - Added const element access - Added const data* - Fixed bug comparing two Views of same size but different shapes closes #207	2025-06-27 14:13:51 +02:00
mazzol_a	318e640639	only test over the public interface	2025-06-23 17:27:13 +02:00
mazzol_a	c6990dabad	deleted unused variables	2025-06-23 17:27:13 +02:00
mazzol_a	9f8eee5d08	fixed python bindings - only read headers of modules that are in the roi	2025-06-16 11:07:00 +02:00
mazzol_a	b13f864b2b	need n_modules	2025-06-13 17:01:13 +02:00
mazzol_a	0f56846e3d	deleted some commented lines	2025-06-13 16:33:25 +02:00
mazzol_a	be67bbab6b	extended DetectorGeometry class with find_geometry, update_geometry (refactoring)	2025-06-13 16:16:23 +02:00
mazzol_a	bd7870e75a	review comments	2025-06-12 18:14:48 +02:00
mazzol_a	75f63607fc	friend_test macro	2025-06-12 17:46:10 +02:00
mazzol_a	19ecc82fff	solved merge conflict	2025-06-10 17:01:40 +02:00
mazzol_a	f9751902a2	formatted main branch	2025-06-10 16:09:06 +02:00
mazzol_a	923f7d22b8	Merge branch 'main' into dev/fix/rawfilereader_with_roi	2025-06-10 15:59:52 +02:00
mazzol_a	ad7525cd02	considered num_udp_interafces for jungfrau and quad structure for eiger	2025-06-10 11:35:15 +02:00
mazzol_a	87d8682b1e	added test cases	2025-06-06 11:31:39 +02:00
Erik Fröjdh	1bc2fd770a	Binding 5x5, 7x7 and 9x9 clusters in python (#188) ... - New binding code with macros to bind all cluster templates - Simplified factory function on the python side - 5x5, 7x7 and 9x9 bindings in python	2025-06-05 08:57:59 +02:00
mazzol_a	9c6e629298	only files within the ROI are opened & geometry always read in RawMasterFile	2025-06-04 16:34:40 +02:00
Erik Fröjdh	9e1b8731b0	RawSubFile support multi file access (#173) ... This PR is a fix/improvement to a problem that Jonathan had. (#156) The original implementation opened all subfiles at once witch works for normal sized datasets but fails at a certain point (thousands of files). - This solution uses RawSubFile to manage the different file indicies and only opens the file we need - Added logger.h from slsDetectorPackage for debug printing (in production no messages should be visible)	2025-05-22 11:00:03 +02:00
Erik Fröjdh	a6eebbe9bd	removed extra const on return type, added cast (#177) ... Fixed warnings on apple clang: - removed extra const on return type - added cast to suppress a float to double conversion warning	2025-05-20 15:27:38 +02:00
Erik Fröjdh	cf158e2dcd	Added scurve fitting (#168) ... - added scurve fitting with two different signs (scurve, scurve2) - at the moment no option to set initial parameters --------- Co-authored-by: JulianHeymes <julian.heymes@psi.ch>	2025-05-05 11:40:04 +02:00
Erik Fröjdh	12ae1424fb	consistent use of ssize_t instead of int64_t (#167) ... - Consistent use of ssize_t to avoid issues on 32 bit platforms and also mac with (long long int as ssize_t)	2025-04-25 15:52:02 +02:00
mazzol_a	eb6862ff99	changed name of GainMap to InvertedGainMap	2025-04-25 12:03:59 +02:00
mazzol_a	f06e722dce	changes from PR review	2025-04-25 11:38:56 +02:00
Erik Fröjdh	7b5e32a824	Api extra (#166) ... Changes to be able to run the example notebooks: - Invert gain map on setting (multiplication is faster but user supplies ADU/energy) - Cast after applying gain map not to loose precision (Important for int32 clusters) - "factor" for ClusterFileSink - Cluster size available to be able to create the right file sink	2025-04-25 10:31:16 +02:00
froejdh_e	86d343f5f5	merged with developer	2025-04-23 11:45:04 +02:00
froejdh_e	c6e8e5f6a1	inverted gain map	2025-04-22 16:16:27 +02:00
Erik Fröjdh	326941e2b4	Custom base for decoding ADC data (#163) ... New function apply_custom_weights (can we find a better name) that takes a uint16 and a NDView<double,1> of bases for the conversion. For each supplied weight it is used as base (instead of 2) to convert from bits to a double. --------- Co-authored-by: siebsi <sieb.patr@gmail.com>	2025-04-22 15:20:46 +02:00
mazzol_a	177459c98a	added multithreaded cluster finder test	2025-04-17 17:09:53 +02:00
Mazzoleni Alice Francesca	c49a2fdf8e	removed cluster_2x2 and cluster3x3 specializations	2025-04-16 16:40:42 +02:00
Mazzoleni Alice Francesca	acd9d5d487	moved parts of ClusterFile implementation into declaration	2025-04-15 15:15:34 +02:00
Mazzoleni Alice Francesca	d4050ec557	enum is now enum class	2025-04-15 14:57:25 +02:00
Mazzoleni Alice Francesca	fca9d5d2fa	replaced extract template parameters	2025-04-15 14:40:09 +02:00
Mazzoleni Alice Francesca	1174f7f434	fixed calculate eta	2025-04-15 13:18:25 +02:00
Mazzoleni Alice Francesca	54def26334	added ClusterFile tests fixed some bugs in ClusterFile	2025-04-14 15:48:09 +02:00
Erik Fröjdh	a59e9656be	Making RawSubFile usable from Python (#158) ... - Removed a printout left from debugging - return also header when reading - added read_n - check for error in ifstream	2025-04-11 16:54:21 +02:00
Mazzoleni Alice Francesca	15e52565a9	dont convert to byte	2025-04-11 14:35:20 +02:00
froejdh_e	e71569b15e	resize before read	2025-04-11 13:38:33 +02:00
froejdh_e	113f34cc98	fixes	2025-04-10 16:50:04 +02:00