Binding 5x5, 7x7 and 9x9 clusters in python (#188)

- New binding code with macros to bind all cluster templates
- Simplified factory function on the python side
- 5x5, 7x7 and 9x9 bindings in python

include/aare/ClusterFile.hpp

@@ -5,6 +5,8 @@
 #include "aare/GainMap.hpp"
 #include "aare/NDArray.hpp"
 #include "aare/defs.hpp"
+#include "aare/logger.hpp"
+
 #include <filesystem>
 #include <fstream>
 #include <optional>
@@ -369,11 +371,15 @@ ClusterFile<ClusterType, Enable>::read_frame_without_cut() {
                                  "Could not read number of clusters");
     }
 
+    LOG(logDEBUG1) << "Reading " << n_clusters
+                  << " clusters from frame " << frame_number;
+
     ClusterVector<ClusterType> clusters(n_clusters);
     clusters.set_frame_number(frame_number);
-
     clusters.resize(n_clusters);
 
+    LOG(logDEBUG1) << "clusters.item_size(): " << clusters.item_size();
+
     if (fread(clusters.data(), clusters.item_size(), n_clusters, fp) !=
         static_cast<size_t>(n_clusters)) {
         throw std::runtime_error(LOCATION + "Could not read clusters");

include/aare/ClusterFileSink.hpp

@@ -21,7 +21,7 @@ class ClusterFileSink {
 
     void process() {
         m_stopped = false;
-        fmt::print("ClusterFileSink started\n");
+        LOG(logDEBUG) << "ClusterFileSink started";
         while (!m_stop_requested || !m_source->isEmpty()) {
             if (ClusterVector<ClusterType> *clusters = m_source->frontPtr();
                 clusters != nullptr) {
@@ -41,13 +41,16 @@ class ClusterFileSink {
                 std::this_thread::sleep_for(m_default_wait);
             }
         }
-        fmt::print("ClusterFileSink stopped\n");
+        LOG(logDEBUG) << "ClusterFileSink stopped";
         m_stopped = true;
     }
 
   public:
     ClusterFileSink(ClusterFinderMT<ClusterType, uint16_t, double> *source,
                     const std::filesystem::path &fname) {
+        LOG(logDEBUG) << "ClusterFileSink: "
+                       << "source: " << source->sink()
+                       << ", file: " << fname.string();
         m_source = source->sink();
         m_thread = std::thread(&ClusterFileSink::process, this);
         m_file.open(fname, std::ios::binary);

include/aare/ClusterFinder.hpp

@@ -38,7 +38,12 @@ class ClusterFinder {
         : m_image_size(image_size), m_nSigma(nSigma),
           c2(sqrt((ClusterSizeY + 1) / 2 * (ClusterSizeX + 1) / 2)),
           c3(sqrt(ClusterSizeX * ClusterSizeY)),
-          m_pedestal(image_size[0], image_size[1]), m_clusters(capacity) {};
+          m_pedestal(image_size[0], image_size[1]), m_clusters(capacity) {
+        LOG(logDEBUG ) << "ClusterFinder: "
+                       << "image_size: " << image_size[0] << "x" << image_size[1]
+                       << ", nSigma: " << nSigma
+                       << ", capacity: " << capacity;
+    }
 
     void push_pedestal_frame(NDView<FRAME_TYPE, 2> frame) {
         m_pedestal.push(frame);

include/aare/ClusterFinderMT.hpp

@@ -7,6 +7,7 @@
 
 #include "aare/ClusterFinder.hpp"
 #include "aare/NDArray.hpp"
+#include "aare/logger.hpp"
 #include "aare/ProducerConsumerQueue.hpp"
 
 namespace aare {
@@ -123,6 +124,12 @@ class ClusterFinderMT {
                     size_t capacity = 2000, size_t n_threads = 3)
         : m_n_threads(n_threads) {
 
+        LOG(logDEBUG1) << "ClusterFinderMT: "
+            << "image_size: " << image_size[0] << "x" << image_size[1]
+            << ", nSigma: " << nSigma
+            << ", capacity: " << capacity
+            << ", n_threads: " << n_threads;
+
         for (size_t i = 0; i < n_threads; i++) {
             m_cluster_finders.push_back(
                 std::make_unique<

include/aare/logger.hpp

@@ -37,7 +37,7 @@ enum TLogLevel {
     logINFOCYAN,
     logINFOMAGENTA,
     logINFO,
-    logDEBUG,
+    logDEBUG,  // constructors, destructors etc. should still give too much output
     logDEBUG1,
     logDEBUG2,
     logDEBUG3,