836dddbc26
First commit of new chunkedpedestal branch. Introduced new pedestal class and the necessary changes to the cluster finder class. This does not include the multithreaded version yet.
2025-08-10 19:03:10 +02:00
froejdh_e
89bb8776ea
check Ndim on drop_first_dim
2025-07-25 11:44:27 +02:00
froejdh_e
3d6858ad33
removed data_ref
2025-07-25 10:42:47 +02:00
froejdh_e
d6222027d0
move constructor for Ndim-1
2025-07-25 10:40:32 +02:00
1347158235
templated calculate_pedestal with boolean template argument only_gain0, added drop_dimension to NDArray and reference pointer to data
2025-07-24 15:40:05 +02:00
froejdh_e
b8e91d0282
zero out switching pixels if 2D calibration is used
2025-07-24 12:10:13 +02:00
froejdh_e
46876bfa73
reduced duplicate code
2025-07-24 10:57:02 +02:00
froejdh_e
348fd0f937
removed unused code
2025-07-24 10:14:29 +02:00
froejdh_e
0fea0f5b0e
added safe_divide to NDArray and used it for pedestal
2025-07-24 09:40:38 +02:00
froejdh_e
9a7713e98a
added g0 calibration, pedestal and pixel counting
2025-07-22 16:42:09 +02:00
Erik Fröjdh
abae2674a9
Apply calibration to Jungfrau raw data ( #216 )
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- Added function to read calibration file
- Multi threaded pedestal subtraction and application of the calibration
2025-07-18 10:19:14 +02:00
Erik Fröjdh
97dae4ac60
added empty() to ClusterVector and fixed docs ( #209 )
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- added ClusterVector::empty() to check if the vector is empty
- Fixed generation of missing docs for ClusterVector
2025-06-27 17:00:46 +02:00
Erik Fröjdh
e3f4b34b72
Const element access and fixed comparing bug ( #208 )
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- Added const element access
- Added const data*
- Fixed bug comparing two Views of same size but different shapes
closes #207
2025-06-27 14:13:51 +02:00
318e640639
only test over the public interface
2025-06-23 17:27:13 +02:00
c6990dabad
deleted unused variables
2025-06-23 17:27:13 +02:00
9f8eee5d08
fixed python bindings - only read headers of modules that are in the roi
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2025-06-16 11:07:00 +02:00
b13f864b2b
need n_modules
2025-06-13 17:01:13 +02:00
0f56846e3d
deleted some commented lines
2025-06-13 16:33:25 +02:00
be67bbab6b
extended DetectorGeometry class with find_geometry, update_geometry (refactoring)
2025-06-13 16:16:23 +02:00
bd7870e75a
review comments
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2025-06-12 18:14:48 +02:00
75f63607fc
friend_test macro
2025-06-12 17:46:10 +02:00
19ecc82fff
solved merge conflict
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2025-06-10 17:01:40 +02:00
f9751902a2
formatted main branch
2025-06-10 16:09:06 +02:00
923f7d22b8
Merge branch 'main' into dev/fix/rawfilereader_with_roi
2025-06-10 15:59:52 +02:00
ad7525cd02
considered num_udp_interafces for jungfrau and quad structure for eiger
2025-06-10 11:35:15 +02:00
87d8682b1e
added test cases
2025-06-06 11:31:39 +02:00
Erik Fröjdh
1bc2fd770a
Binding 5x5, 7x7 and 9x9 clusters in python ( #188 )
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- New binding code with macros to bind all cluster templates
- Simplified factory function on the python side
- 5x5, 7x7 and 9x9 bindings in python
2025-06-05 08:57:59 +02:00
9c6e629298
only files within the ROI are opened & geometry always read in RawMasterFile
2025-06-04 16:34:40 +02:00
Erik Fröjdh
9e1b8731b0
RawSubFile support multi file access ( #173 )
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This PR is a fix/improvement to a problem that Jonathan had. (#156 ) The
original implementation opened all subfiles at once witch works for
normal sized datasets but fails at a certain point (thousands of files).
- This solution uses RawSubFile to manage the different file indicies
and only opens the file we need
- Added logger.h from slsDetectorPackage for debug printing (in
production no messages should be visible)
2025-05-22 11:00:03 +02:00
Erik Fröjdh
a6eebbe9bd
removed extra const on return type, added cast ( #177 )
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Build on RHEL8 / build (push) Successful in 2m34s
Fixed warnings on apple clang:
- removed extra const on return type
- added cast to suppress a float to double conversion warning
2025-05-20 15:27:38 +02:00
Erik Fröjdh
cf158e2dcd
Added scurve fitting ( #168 )
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- added scurve fitting with two different signs (scurve, scurve2)
- at the moment no option to set initial parameters
---------
Co-authored-by: JulianHeymes <julian.heymes@psi.ch >
2025-05-05 11:40:04 +02:00
Erik Fröjdh
12ae1424fb
consistent use of ssize_t instead of int64_t ( #167 )
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Build on RHEL8 / build (push) Failing after 2m33s
- Consistent use of ssize_t to avoid issues on 32 bit platforms and also
mac with (long long int as ssize_t)
2025-04-25 15:52:02 +02:00
mazzol_a
eb6862ff99
changed name of GainMap to InvertedGainMap
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2025-04-25 12:03:59 +02:00
mazzol_a
f06e722dce
changes from PR review
2025-04-25 11:38:56 +02:00
Erik Fröjdh
7b5e32a824
Api extra ( #166 )
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Changes to be able to run the example notebooks:
- Invert gain map on setting (multiplication is faster but user supplies
ADU/energy)
- Cast after applying gain map not to loose precision (Important for
int32 clusters)
- "factor" for ClusterFileSink
- Cluster size available to be able to create the right file sink
2025-04-25 10:31:16 +02:00
froejdh_e
86d343f5f5
merged with developer
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2025-04-23 11:45:04 +02:00
froejdh_e
c6e8e5f6a1
inverted gain map
2025-04-22 16:16:27 +02:00
Erik Fröjdh
326941e2b4
Custom base for decoding ADC data ( #163 )
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New function apply_custom_weights (can we find a better name) that takes
a uint16 and a NDView<double,1> of bases for the conversion. For each
supplied weight it is used as base (instead of 2) to convert from bits
to a double.
---------
Co-authored-by: siebsi <sieb.patr@gmail.com >
2025-04-22 15:20:46 +02:00
mazzol_a
177459c98a
added multithreaded cluster finder test
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2025-04-17 17:09:53 +02:00
Mazzoleni Alice Francesca
c49a2fdf8e
removed cluster_2x2 and cluster3x3 specializations
Build on RHEL9 / buildh (push) Successful in 1m58s
2025-04-16 16:40:42 +02:00
Mazzoleni Alice Francesca
acd9d5d487
moved parts of ClusterFile implementation into declaration
Build on RHEL9 / buildh (push) Successful in 1m55s
2025-04-15 15:15:34 +02:00
Mazzoleni Alice Francesca
d4050ec557
enum is now enum class
2025-04-15 14:57:25 +02:00
Mazzoleni Alice Francesca
fca9d5d2fa
replaced extract template parameters
2025-04-15 14:40:09 +02:00
Mazzoleni Alice Francesca
1174f7f434
fixed calculate eta
2025-04-15 13:18:25 +02:00
Mazzoleni Alice Francesca
54def26334
added ClusterFile tests fixed some bugs in ClusterFile
Build on RHEL9 / buildh (push) Successful in 1m55s
2025-04-14 15:48:09 +02:00
Erik Fröjdh
a59e9656be
Making RawSubFile usable from Python ( #158 )
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Build on RHEL8 / build (push) Successful in 1m55s
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- Removed a printout left from debugging
- return also header when reading
- added read_n
- check for error in ifstream
2025-04-11 16:54:21 +02:00
Mazzoleni Alice Francesca
15e52565a9
dont convert to byte
2025-04-11 14:35:20 +02:00
froejdh_e
e71569b15e
resize before read
2025-04-11 13:38:33 +02:00
froejdh_e
113f34cc98
fixes
2025-04-10 16:50:04 +02:00
Mazzoleni Alice Francesca
53a90e197e
added additional tests
Build on RHEL9 / buildh (push) Successful in 1m52s
2025-04-10 10:41:58 +02:00
