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• 1bba5cd755 Comment out dot.view() for compatibility issues running on docker main Florez Ospina Juan Felipe 2025-06-22 15:25:52 +02:00
• f90ef82a32 Comment out dot.view() for compatibility issues running on docker Florez Ospina Juan Felipe 2025-06-22 15:22:24 +02:00
• 967a40f93a Update Dockerfile to contain renderer for graphviz workflow files Florez Ospina Juan Felipe 2025-06-22 15:06:13 +02:00
• 6547cd9e17 Update campaignDescriptor.yaml with instruction details Florez Ospina Juan Felipe 2025-06-22 15:00:57 +02:00
• 7fc2ee211d Update readme.md with clarifying statement. NETWORK_MOUNT env variable defautls to data/ in repo Florez Ospina Juan Felipe 2025-06-22 14:59:50 +02:00
• 3f2c3b47f2 Update docker-compose.yaml with env variable NETWORK_MOUNT. Local run: it defaults to data/ and otherwise it takes the value based on .env externally defined. Florez Ospina Juan Felipe 2025-06-22 14:48:30 +02:00
• a80f03463c Update reademe.md Florez Ospina Juan Felipe 2025-06-22 12:44:50 +02:00
• dec7dc47e2 Update docker-compose.yaml to depend on externally defined network drive (e.g., NETWORK_DRIVE) Florez Ospina Juan Felipe 2025-06-22 12:44:07 +02:00
• e6b05b4914 Update campaignDescriptor.yaml to depend on externally defined network drive (e.g., NETWORK_DRIVE) Florez Ospina Juan Felipe 2025-06-22 12:43:37 +02:00
• 071d1f49a7 Update dima to latest version Florez Ospina Juan Felipe 2025-06-22 12:27:48 +02:00
• 1e4cd3fc8a Update dima to latest version Florez Ospina Juan Felipe 2025-06-20 13:44:00 +02:00
• bb3907d384 Fixed url type in README.md Florez Ospina Juan Felipe 2025-06-18 08:58:40 +02:00
• 6d421bdad8 Update docker-compose.yaml. Includes services for running with a network drive or locally Florez Ospina Juan Felipe 2025-06-17 22:09:00 +02:00
• 4cda1ffb72 Add poster with figures Florez Ospina Juan Felipe 2025-06-17 22:07:55 +02:00
• 5319430d5d Update to README.md, includes main features authors and funding Florez Ospina Juan Felipe 2025-06-17 22:07:27 +02:00
• 482db5704d Add AGPL3 licence Florez Ospina Juan Felipe 2025-06-11 10:36:47 +02:00
• 23253644f8 Update dima to latest version. Params can now be partially ingested to hdf5 files Florez Ospina Juan Felipe 2025-06-10 16:04:56 +02:00
• 56ead34ef9 Correct typo in README.md Florez Ospina Juan Felipe 2025-06-10 14:45:38 +02:00
• 0414f5608c update dima to latest version Florez Ospina Juan Felipe 2025-06-10 14:43:23 +02:00
• 57c5d9784c Add notebook for worfklow visualization Florez Ospina Juan Felipe 2025-06-07 20:03:53 +02:00
• fda5099221 Change computational env to include graphviz for workflow visualization Florez Ospina Juan Felipe 2025-06-07 20:02:41 +02:00
• 457a2ae016 Update workflow step names Florez Ospina Juan Felipe 2025-06-07 20:01:02 +02:00
• 8f9790456c Implement plot_workflow_file() --> workflows/utils.py. Florez Ospina Juan Felipe 2025-06-07 19:54:45 +02:00
• fdad73dd77 Update dima to latest version Florez Ospina Juan Felipe 2025-06-07 19:16:50 +02:00
• bb9625cd34 update notebooks after running them with 2024 pay data renku/main Florez Ospina Juan Felipe 2025-06-06 17:21:01 +02:00
• 5d84d726b6 Aligning remote renku/main with local Merge branch 'renku/main' of https://gitea.psi.ch/apog/acsmnode into renku/main Florez Ospina Juan Felipe 2025-06-06 17:07:06 +02:00
• 0671f0ad7f Refactor notebooks for workflow generation Florez Ospina Juan Felipe 2025-06-06 17:05:10 +02:00
• 7b3404ecd9 Added workflows folder and utils.py to support workflow generation Florez Ospina Juan Felipe 2025-06-06 17:03:25 +02:00
• 160791b738 Refactor steps to collect information for renku workflow file generation Florez Ospina Juan Felipe 2025-06-06 17:02:13 +02:00
• 1b9e61688f Remove notebooks from .gitignore. this is needed to run the data chain app Juan Felipe Florez Ospina 2025-06-04 15:37:46 +02:00
• 358944ee7f Append previous .dockerignore and requiremnts.txt to the version after renku init, basically trying to restore them back after being overwritten by renku init. Juan Felipe Florez Ospina 2025-06-04 14:57:24 +02:00
• 19f4e6a0f0 renku init Juan Felipe Florez Ospina 2025-06-04 14:52:49 +02:00
• 14c41ce76d Prepare gitrepo for renku init. Remove data/ from .gitignore and Rename Dockerfile by Dockerfile.ascmchain to avoid conflicts with renku. Florez Ospina Juan Felipe 2025-06-04 14:49:22 +02:00
• a4847f0071 Renamed Dockerfile to avoid conflicts with project rekurization/init Florez Ospina Juan Felipe 2025-06-04 14:10:24 +02:00
• effd5b865e Replace nonoperation reviewPannel in app/data_flagging_app.py with date range picker. Cached time column to speed up figure update but it doesnot look there was much improvement. Florez Ospina Juan Felipe 2025-06-04 14:03:45 +02:00
• da6884ef21 Fix bug in app/data_flagging_app.py. This is a TODO/BUG [from Leïla] Correct error when flags are loaded in the app. Florez Ospina Juan Felipe 2025-06-04 10:47:48 +02:00
• c15aa4e828 Merge pull request 'WIP.new_changes_leila' (#1) from new_changes_leila into main florez_j 2025-06-04 09:35:31 +02:00
• fc6f6708b8 Merge branch 'main' into new_changes_leila florez_j 2025-06-04 09:34:12 +02:00
• 8afa2f98d1 Update notebooks/acsm_pipeline.ipynb. Step 5.2: added all species for the new uncertainty simon_l 2025-05-28 11:51:36 +02:00
• 3a23db1a12 Update TODO.md. Added some todos and deleted one that is done now. simon_l 2025-05-28 11:48:26 +02:00
• 196e237838 Update pipelines/steps/utils.py. Changes uncertainty_estimate simon_l 2025-05-28 08:48:38 +02:00
• ddfa1273af update dima to latest version. Florez Ospina Juan Felipe 2025-05-27 10:14:02 +02:00
• a730368678 Add step to adjust uncertainties Florez Ospina Juan Felipe 2025-05-27 10:03:03 +02:00
• f3f830487e Extend pipelines/steps/adjust_uncertainty_column_in_nas_file.py to handle list of variables. Florez Ospina Juan Felipe 2025-05-27 09:53:12 +02:00
• 38fe2b8774 Update data chain notebook with step to adjust uncertainties Florez Ospina Juan Felipe 2025-05-26 20:00:31 +02:00
• 08ba10dc48 Implement new step pipelines/steps/adjust_uncertainty_column_in_nas_file.py. Florez Ospina Juan Felipe 2025-05-26 19:50:18 +02:00
• b1b8b426fc Update dima to latest version Florez Ospina Juan Felipe 2025-05-26 19:42:57 +02:00
• fe9ffe7c1b Update README.md. Changed git clone directory changes_leila simon_l 2025-05-26 14:43:23 +02:00
• b4d07bc2b4 Update README.md. Changed git clone url to gitea simon_l 2025-05-26 14:42:01 +02:00
• 37dc1d390d Update TODO.md. Changed order of todos simon_l 2025-05-26 14:24:50 +02:00
• 59489c611f Add cell and comment to manually choose data dirs to analize Florez Ospina Juan Felipe 2025-05-26 13:33:50 +02:00
• 44a696e52f Change submodule url from gitlab to gitea Florez Ospina Juan Felipe 2025-05-26 13:18:51 +02:00
• 989e99078a Merge branch 'main' of https://gitlab.psi.ch/apog/acsmnode This updates todo.md Florez Ospina Juan Felipe 2025-05-26 13:12:52 +02:00
• 52fdb7a8ad Fix number of variables by subtracting one. Start_time is now excluded from count. Florez Ospina Juan Felipe 2025-05-26 13:12:40 +02:00
• e8327f7bd7 Merge branch 'changes/leila' into 'main' florez_j 2025-05-26 13:09:55 +02:00
• f8ee5b1ce4 Added a todo simon_l 2025-05-26 11:59:56 +02:00
• e22321f823 Updated to do list simon_l 2025-05-21 18:59:19 +02:00
• 7a0ce95848 Changed the originator address simon_l 2025-05-21 17:22:09 +02:00
• f7e1c31550 added len(interpolated_cpc) simon_l 2025-05-21 16:35:50 +02:00
• a7faf69c96 Changed missing value code generator, any number greater than the largest possible one that can be represented in terms of 9s is capped Florez Ospina Juan Felipe 2025-05-21 15:17:25 +02:00
• ce776610f6 Add new step to remove inletP or in general a column from nas file Florez Ospina Juan Felipe 2025-05-21 09:49:05 +02:00
• e39c23bbad Update generate_flags.py to skip checking for cpc flags when not available Florez Ospina Juan Felipe 2025-05-21 09:48:19 +02:00
• 01769f10e0 Implement new step to remove column from already created nas file. Florez Ospina Juan Felipe 2025-05-21 09:43:36 +02:00
• f880b0f1ba Updated dima to latest version Florez Ospina Juan Felipe 2025-05-21 09:27:50 +02:00
• e87ff83c66 Merge branch 'leila_more_modifications' into 'main' florez_j 2025-05-21 09:22:43 +02:00
• c181e7abad Update file campaignDescriptor.yaml simon_l 2025-05-20 17:32:43 +02:00
• 727256cb46 Merge branch 'leila_modifications' into 'main' florez_j 2025-05-20 17:28:45 +02:00
• a9461cb1aa Added limits on y axis for flags visualization simon_l 2025-05-20 16:27:11 +02:00
• e4d87080bc Enable all flaggs for use in flagging app and display them in order according to their ranking (see app/flags/ebas_dict.yaml) Florez Ospina Juan Felipe 2025-05-19 17:10:16 +02:00
• ccd4740dba Merge branch 'todos_update' into 'main' florez_j 2025-05-16 14:31:48 +02:00
• cc1b445d38 Implement binary flags for visualization purposes, and fix bug with cpc flags. Florez Ospina Juan Felipe 2025-05-16 14:22:17 +02:00
• 78d5c22dc3 Flag from diagnostics (456) should override other flags like CPC (652, 460) simon_l 2025-05-15 16:03:08 +02:00
• 58d7b425aa Add generate cpc flags pipelines/steps/generate_flags.py Florez Ospina Juan Felipe 2025-05-15 15:01:11 +02:00
• 23ee4c412b Update dima to latest version Florez Ospina Juan Felipe 2025-05-15 14:58:24 +02:00
• 9915538442 Update dima submodule to point to dima remote on Gitea.psi.ch Florez Ospina Juan Felipe 2025-05-14 10:15:37 +02:00
• fb3e3904bd Remove defaults channel from conda source channels Florez Ospina Juan Felipe 2025-05-13 12:50:33 +02:00
• 37671a3685 update pipelines/steps/visualize_datatable_vars.py with interactive plots and refactor dependent jupyter nb accordingly Florez Ospina Juan Felipe 2025-05-13 11:32:46 +02:00
• e152c9eefd Update file TODO.md simon_l 2025-05-12 14:38:39 +02:00
• 0e642d4b9b Update file TODO.md simon_l 2025-05-08 11:19:59 +02:00
• 1c0a4631aa Update file TODO.md simon_l 2025-05-08 09:20:06 +02:00
• ae107acea8 Update file TODO.md simon_l 2025-04-11 14:54:35 +02:00
• 5a54a22ebd Update after run with PAY dataset. Florez Ospina Juan Felipe 2025-04-11 11:31:35 +02:00
• 0353c8492b Added data chain step. This step updates the current parameters with new input folder params Florez Ospina Juan Felipe 2025-04-11 11:23:04 +02:00
• 4408514439 Rename attribute station --> station_abbr Florez Ospina Juan Felipe 2025-04-11 11:20:48 +02:00
• e7863078aa Add data chain step /update_datachain_params.py. This uses params specified in input data folder to update current data chain params Florez Ospina Juan Felipe 2025-04-11 11:07:52 +02:00
• cea83396d2 Add function to estimate project directory path Florez Ospina Juan Felipe 2025-04-11 11:05:41 +02:00
• 68a7d5dc2b Fix out of bound error in pipelines/steps/visualize_datatable_vars.py Florez Ospina Juan Felipe 2025-04-11 11:04:00 +02:00
• c9e25c2483 Add new placeholder for submitter name and remove metadata element 'station' conflicting with third party converter Florez Ospina Juan Felipe 2025-04-11 11:02:38 +02:00
• 13bcd88a93 Replace station attribute with station_abbr, so it does not conflict with ebas database naming Florez Ospina Juan Felipe 2025-04-11 10:41:05 +02:00
• 6c8cb61df2 I added some todos simon_l 2025-04-10 16:51:46 +02:00
• b0b3ccef66 Update campaignDescriptor.yaml with originator and submitter info Florez Ospina Juan Felipe 2025-04-08 21:27:51 +02:00
• 4725d85e61 Update data chain notebook Florez Ospina Juan Felipe 2025-04-08 21:26:36 +02:00
• 881209bf82 Update steps to allow filenames for PAYERN station Florez Ospina Juan Felipe 2025-04-08 21:26:01 +02:00
• 3dfed2c5f3 Update pipelines/steps/prepare_ebas_submission.py. Rmoved hard coded paths and build output name using metadata from campaign descriptor. Also, we can now specify month ranges Florez Ospina Juan Felipe 2025-04-08 18:44:46 +02:00
• 5dd280e88c Update pipelines/steps/utils.py. Now we can load the campaign descriptor using load_project_yaml_files() Florez Ospina Juan Felipe 2025-04-08 18:43:01 +02:00
• bfaaeb4416 Add header templates for JFJ and PAY Florez Ospina Juan Felipe 2025-04-08 18:35:44 +02:00
• ca0366338a Add pipeline step to update actris_header with submitter and originator Florez Ospina Juan Felipe 2025-04-08 18:34:51 +02:00
• 0e625b558a Update third party submodule Florez Ospina Juan Felipe 2025-04-08 15:46:18 +02:00
• 00a85505c8 Fix bug when infering name of flags file from dataset name Florez Ospina Juan Felipe 2025-04-04 16:53:41 +02:00
• dcf6b8ec41 Clean up and document steps in notebooks/demo_visualize_diagnostic_flags_from_hdf5_file.ipynb Florez Ospina Juan Felipe 2025-04-04 16:07:07 +02:00