mirror of
https://gitea.psi.ch/APOG/acsmnode.git
synced 2025-06-27 12:01:10 +02:00
renku init
renku-transaction: b204f31a23ed480b9323904a193047db
This commit is contained in:
renku 2.9.4
@ -1,15 +1,4 @@
|
||||
data/
|
||||
figures/
|
||||
pipelines/params/
|
||||
envs/
|
||||
logs/
|
||||
*.pyc
|
||||
__pycache__/
|
||||
*.h5
|
||||
.Trash-0/
|
||||
.ipynb_checkpoints/
|
||||
env_setup.sh
|
||||
docker-compose.yaml
|
||||
run_container.sh
|
||||
TODO.md
|
||||
.env
|
||||
data
|
||||
notebooks
|
||||
.renku
|
||||
.git
|
||||
|
||||
1
.gitattributes
vendored
Normal file
1
.gitattributes
vendored
Normal file
@ -0,0 +1 @@
|
||||
.renku/metadata/** merge=renkumerge
|
||||
353
.gitignore
vendored
353
.gitignore
vendored
@ -1,7 +1,346 @@
|
||||
#data/
|
||||
envs/
|
||||
logs/
|
||||
*.pyc
|
||||
__pycache__/
|
||||
*.h5
|
||||
.env
|
||||
#data/
|
||||
envs/
|
||||
logs/
|
||||
*.pyc
|
||||
__pycache__/
|
||||
*.h5
|
||||
.env
|
||||
|
||||
|
||||
# Created by https://www.gitignore.io/api/macos,python,R,linux,vim,emacs,visualstudiocode,intellij
|
||||
# Edit at https://www.gitignore.io/?templates=macos,python,R,linux,vim,emacs,visualstudiocode,intellij
|
||||
|
||||
### Emacs ###
|
||||
# -*- mode: gitignore; -*-
|
||||
*~
|
||||
\#*\#
|
||||
/.emacs.desktop
|
||||
/.emacs.desktop.lock
|
||||
*.elc
|
||||
auto-save-list
|
||||
tramp
|
||||
.\#*
|
||||
|
||||
# Org-mode
|
||||
.org-id-locations
|
||||
*_archive
|
||||
|
||||
# flymake-mode
|
||||
*_flymake.*
|
||||
|
||||
# eshell files
|
||||
/eshell/history
|
||||
/eshell/lastdir
|
||||
|
||||
# elpa packages
|
||||
/elpa/
|
||||
|
||||
# reftex files
|
||||
*.rel
|
||||
|
||||
# AUCTeX auto folder
|
||||
/auto/
|
||||
|
||||
# cask packages
|
||||
.cask/
|
||||
dist/
|
||||
|
||||
# Flycheck
|
||||
flycheck_*.el
|
||||
|
||||
# server auth directory
|
||||
/server/
|
||||
|
||||
# projectiles files
|
||||
.projectile
|
||||
|
||||
# directory configuration
|
||||
.dir-locals.el
|
||||
|
||||
# network security
|
||||
/network-security.data
|
||||
|
||||
|
||||
### Intellij ###
|
||||
# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio and WebStorm
|
||||
# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
|
||||
|
||||
# User-specific stuff
|
||||
.idea/**/workspace.xml
|
||||
.idea/**/tasks.xml
|
||||
.idea/**/usage.statistics.xml
|
||||
.idea/**/dictionaries
|
||||
.idea/**/shelf
|
||||
|
||||
# Generated files
|
||||
.idea/**/contentModel.xml
|
||||
|
||||
# Sensitive or high-churn files
|
||||
.idea/**/dataSources/
|
||||
.idea/**/dataSources.ids
|
||||
.idea/**/dataSources.local.xml
|
||||
.idea/**/sqlDataSources.xml
|
||||
.idea/**/dynamic.xml
|
||||
.idea/**/uiDesigner.xml
|
||||
.idea/**/dbnavigator.xml
|
||||
|
||||
# Gradle
|
||||
.idea/**/gradle.xml
|
||||
.idea/**/libraries
|
||||
|
||||
# Gradle and Maven with auto-import
|
||||
# When using Gradle or Maven with auto-import, you should exclude module files,
|
||||
# since they will be recreated, and may cause churn. Uncomment if using
|
||||
# auto-import.
|
||||
# .idea/modules.xml
|
||||
# .idea/*.iml
|
||||
# .idea/modules
|
||||
|
||||
# CMake
|
||||
cmake-build-*/
|
||||
|
||||
# Mongo Explorer plugin
|
||||
.idea/**/mongoSettings.xml
|
||||
|
||||
# File-based project format
|
||||
*.iws
|
||||
|
||||
# IntelliJ
|
||||
out/
|
||||
|
||||
# mpeltonen/sbt-idea plugin
|
||||
.idea_modules/
|
||||
|
||||
# JIRA plugin
|
||||
atlassian-ide-plugin.xml
|
||||
|
||||
# Cursive Clojure plugin
|
||||
.idea/replstate.xml
|
||||
|
||||
# Crashlytics plugin (for Android Studio and IntelliJ)
|
||||
com_crashlytics_export_strings.xml
|
||||
crashlytics.properties
|
||||
crashlytics-build.properties
|
||||
fabric.properties
|
||||
|
||||
# Editor-based Rest Client
|
||||
.idea/httpRequests
|
||||
|
||||
# Android studio 3.1+ serialized cache file
|
||||
.idea/caches/build_file_checksums.ser
|
||||
|
||||
# JetBrains templates
|
||||
**___jb_tmp___
|
||||
|
||||
### Intellij Patch ###
|
||||
# Comment Reason: https://github.com/joeblau/gitignore.io/issues/186#issuecomment-215987721
|
||||
|
||||
# *.iml
|
||||
# modules.xml
|
||||
# .idea/misc.xml
|
||||
# *.ipr
|
||||
|
||||
# Sonarlint plugin
|
||||
.idea/sonarlint
|
||||
|
||||
### Linux ###
|
||||
|
||||
# temporary files which can be created if a process still has a handle open of a deleted file
|
||||
.fuse_hidden*
|
||||
|
||||
# KDE directory preferences
|
||||
.directory
|
||||
|
||||
# Linux trash folder which might appear on any partition or disk
|
||||
.Trash-*
|
||||
|
||||
# .nfs files are created when an open file is removed but is still being accessed
|
||||
.nfs*
|
||||
|
||||
### macOS ###
|
||||
# General
|
||||
.DS_Store
|
||||
.AppleDouble
|
||||
.LSOverride
|
||||
|
||||
# Icon must end with two \r
|
||||
Icon
|
||||
|
||||
# Thumbnails
|
||||
._*
|
||||
|
||||
# Files that might appear in the root of a volume
|
||||
.DocumentRevisions-V100
|
||||
.fseventsd
|
||||
.Spotlight-V100
|
||||
.TemporaryItems
|
||||
.Trashes
|
||||
.VolumeIcon.icns
|
||||
.com.apple.timemachine.donotpresent
|
||||
|
||||
# Directories potentially created on remote AFP share
|
||||
.AppleDB
|
||||
.AppleDesktop
|
||||
Network Trash Folder
|
||||
Temporary Items
|
||||
.apdisk
|
||||
|
||||
### Python ###
|
||||
# Byte-compiled / optimized / DLL files
|
||||
__pycache__/
|
||||
*.py[cod]
|
||||
*$py.class
|
||||
|
||||
# C extensions
|
||||
*.so
|
||||
|
||||
# Distribution / packaging
|
||||
.Python
|
||||
build/
|
||||
develop-eggs/
|
||||
downloads/
|
||||
eggs/
|
||||
.eggs/
|
||||
lib/
|
||||
lib64/
|
||||
parts/
|
||||
sdist/
|
||||
var/
|
||||
wheels/
|
||||
pip-wheel-metadata/
|
||||
share/python-wheels/
|
||||
*.egg-info/
|
||||
.installed.cfg
|
||||
*.egg
|
||||
MANIFEST
|
||||
|
||||
# PyInstaller
|
||||
# Usually these files are written by a python script from a template
|
||||
# before PyInstaller builds the exe, so as to inject date/other infos into it.
|
||||
*.manifest
|
||||
*.spec
|
||||
|
||||
# Installer logs
|
||||
pip-log.txt
|
||||
pip-delete-this-directory.txt
|
||||
|
||||
# Unit test / coverage reports
|
||||
htmlcov/
|
||||
.tox/
|
||||
.nox/
|
||||
.coverage
|
||||
.coverage.*
|
||||
.cache
|
||||
nosetests.xml
|
||||
coverage.xml
|
||||
*.cover
|
||||
.hypothesis/
|
||||
.pytest_cache/
|
||||
|
||||
# Translations
|
||||
*.mo
|
||||
*.pot
|
||||
|
||||
# Django stuff:
|
||||
*.log
|
||||
local_settings.py
|
||||
db.sqlite3
|
||||
|
||||
# Flask stuff:
|
||||
instance/
|
||||
.webassets-cache
|
||||
|
||||
# Scrapy stuff:
|
||||
.scrapy
|
||||
|
||||
# Sphinx documentation
|
||||
docs/_build/
|
||||
|
||||
# PyBuilder
|
||||
target/
|
||||
|
||||
# Jupyter Notebook
|
||||
.ipynb_checkpoints
|
||||
|
||||
# IPython
|
||||
profile_default/
|
||||
ipython_config.py
|
||||
|
||||
# pyenv
|
||||
.python-version
|
||||
|
||||
# pipenv
|
||||
# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
|
||||
# However, in case of collaboration, if having platform-specific dependencies or dependencies
|
||||
# having no cross-platform support, pipenv may install dependencies that don't work, or not
|
||||
# install all needed dependencies.
|
||||
#Pipfile.lock
|
||||
|
||||
# celery beat schedule file
|
||||
celerybeat-schedule
|
||||
|
||||
# SageMath parsed files
|
||||
*.sage.py
|
||||
|
||||
# Environments
|
||||
.env
|
||||
.venv
|
||||
env/
|
||||
venv/
|
||||
ENV/
|
||||
env.bak/
|
||||
venv.bak/
|
||||
|
||||
# Spyder project settings
|
||||
.spyderproject
|
||||
.spyproject
|
||||
|
||||
# Rope project settings
|
||||
.ropeproject
|
||||
|
||||
# mkdocs documentation
|
||||
/site
|
||||
|
||||
# mypy
|
||||
.mypy_cache/
|
||||
.dmypy.json
|
||||
dmypy.json
|
||||
|
||||
# Pyre type checker
|
||||
.pyre/
|
||||
|
||||
### Vim ###
|
||||
# Swap
|
||||
[._]*.s[a-v][a-z]
|
||||
[._]*.sw[a-p]
|
||||
[._]s[a-rt-v][a-z]
|
||||
[._]ss[a-gi-z]
|
||||
[._]sw[a-p]
|
||||
|
||||
# Session
|
||||
Session.vim
|
||||
|
||||
# Temporary
|
||||
.netrwhist
|
||||
# Auto-generated tag files
|
||||
tags
|
||||
# Persistent undo
|
||||
[._]*.un~
|
||||
|
||||
### VisualStudioCode ###
|
||||
.vscode/*
|
||||
!.vscode/settings.json
|
||||
!.vscode/tasks.json
|
||||
!.vscode/launch.json
|
||||
!.vscode/extensions.json
|
||||
|
||||
### VisualStudioCode Patch ###
|
||||
# Ignore all local history of files
|
||||
.history
|
||||
|
||||
# End of https://www.gitignore.io/api/macos,python,R,linux,vim,emacs,visualstudiocode,intellij
|
||||
|
||||
# Renku
|
||||
.renku.lock
|
||||
.renku/tmp
|
||||
.renku/cache
|
||||
|
||||
18
.gitlab-ci.yml
Normal file
18
.gitlab-ci.yml
Normal file
@ -0,0 +1,18 @@
|
||||
variables:
|
||||
GIT_STRATEGY: fetch
|
||||
GIT_SSL_NO_VERIFY: "true"
|
||||
GIT_LFS_SKIP_SMUDGE: 1
|
||||
DOCKER_BUILDKIT: 1
|
||||
|
||||
stages:
|
||||
- build
|
||||
|
||||
image_build:
|
||||
stage: build
|
||||
image: docker:stable
|
||||
before_script:
|
||||
- docker login -u gitlab-ci-token -p $CI_JOB_TOKEN http://$CI_REGISTRY
|
||||
script: |
|
||||
CI_COMMIT_SHA_7=$(echo $CI_COMMIT_SHA | cut -c1-7)
|
||||
docker build --tag $CI_REGISTRY_IMAGE:$CI_COMMIT_SHA_7 .
|
||||
docker push $CI_REGISTRY_IMAGE:$CI_COMMIT_SHA_7
|
||||
2
.renku/metadata.yml
Normal file
2
.renku/metadata.yml
Normal file
@ -0,0 +1,2 @@
|
||||
# Dummy file kept for backwards compatibility, does not contain actual version
|
||||
'http://schema.org/schemaVersion': '9'
|
||||
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Binary file not shown.
@ -0,0 +1,87 @@
|
||||
{
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_data_value": {
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
{
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
"BTree",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOBTree"
|
||||
},
|
||||
"Bucket",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOBucket"
|
||||
},
|
||||
"Set",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOSet"
|
||||
},
|
||||
"TreeSet",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOTreeSet"
|
||||
},
|
||||
"attrname",
|
||||
"upstream",
|
||||
"call",
|
||||
false,
|
||||
"difference",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.difference"
|
||||
},
|
||||
"dump",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.dump_activity"
|
||||
},
|
||||
"element",
|
||||
{
|
||||
"@renku_data_type": "zope.interface.interface.Attribute",
|
||||
"@renku_data_value": {
|
||||
"_Element__tagged_values": null,
|
||||
"__doc__": "the upstream activities",
|
||||
"__name__": "upstream",
|
||||
"interface": {
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.IActivityDownstreamRelation"
|
||||
}
|
||||
}
|
||||
},
|
||||
"interface",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.IActivityDownstreamRelation"
|
||||
},
|
||||
"intersection",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.intersection"
|
||||
},
|
||||
"load",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.load_activity"
|
||||
},
|
||||
"multiple",
|
||||
false,
|
||||
"multiunion",
|
||||
null,
|
||||
"name",
|
||||
"upstream",
|
||||
"union",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.union"
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"@renku_oid": "296522fff8334ccea75df004fe8f6f16e5eb4fcec86d472fb0125e0e64e74b27"
|
||||
}
|
||||
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@ -0,0 +1,87 @@
|
||||
{
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_data_value": {
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
{
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
"BTree",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOBTree"
|
||||
},
|
||||
"Bucket",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOBucket"
|
||||
},
|
||||
"Set",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOSet"
|
||||
},
|
||||
"TreeSet",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOTreeSet"
|
||||
},
|
||||
"attrname",
|
||||
"upstream",
|
||||
"call",
|
||||
false,
|
||||
"difference",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.difference"
|
||||
},
|
||||
"dump",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.dump_activity"
|
||||
},
|
||||
"element",
|
||||
{
|
||||
"@renku_data_type": "zope.interface.interface.Attribute",
|
||||
"@renku_data_value": {
|
||||
"_Element__tagged_values": null,
|
||||
"__doc__": "the upstream activities",
|
||||
"__name__": "upstream",
|
||||
"interface": {
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.IActivityDownstreamRelation"
|
||||
}
|
||||
}
|
||||
},
|
||||
"interface",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.IActivityDownstreamRelation"
|
||||
},
|
||||
"intersection",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.intersection"
|
||||
},
|
||||
"load",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.load_activity"
|
||||
},
|
||||
"multiple",
|
||||
false,
|
||||
"multiunion",
|
||||
null,
|
||||
"name",
|
||||
"upstream",
|
||||
"union",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.union"
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"@renku_oid": "437974a24f284fba8c463258f768218d2ac86a5b99aa4537a85acec9b4905906"
|
||||
}
|
||||
@ -0,0 +1,87 @@
|
||||
{
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_data_value": {
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
{
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
"BTree",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOBTree"
|
||||
},
|
||||
"Bucket",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOBucket"
|
||||
},
|
||||
"Set",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOSet"
|
||||
},
|
||||
"TreeSet",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOTreeSet"
|
||||
},
|
||||
"attrname",
|
||||
"downstream",
|
||||
"call",
|
||||
false,
|
||||
"difference",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.difference"
|
||||
},
|
||||
"dump",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.dump_activity"
|
||||
},
|
||||
"element",
|
||||
{
|
||||
"@renku_data_type": "zope.interface.interface.Attribute",
|
||||
"@renku_data_value": {
|
||||
"_Element__tagged_values": null,
|
||||
"__doc__": "the downstream activities",
|
||||
"__name__": "downstream",
|
||||
"interface": {
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.IActivityDownstreamRelation"
|
||||
}
|
||||
}
|
||||
},
|
||||
"interface",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.IActivityDownstreamRelation"
|
||||
},
|
||||
"intersection",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.intersection"
|
||||
},
|
||||
"load",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.load_activity"
|
||||
},
|
||||
"multiple",
|
||||
false,
|
||||
"multiunion",
|
||||
null,
|
||||
"name",
|
||||
"downstream",
|
||||
"union",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.union"
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"@renku_oid": "457cec4a297b4280824923e332aeb4ffc95f7fcf1dfb4708872fc2f79c7ae294"
|
||||
}
|
||||
Binary file not shown.
Binary file not shown.
@ -0,0 +1,26 @@
|
||||
{
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_data_value": {
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
{
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
"downstream",
|
||||
{
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_oid": "457cec4a297b4280824923e332aeb4ffc95f7fcf1dfb4708872fc2f79c7ae294",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"upstream",
|
||||
{
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_oid": "437974a24f284fba8c463258f768218d2ac86a5b99aa4537a85acec9b4905906",
|
||||
"@renku_reference": true
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"@renku_oid": "92f6be8c8aae49c6b2c48dc8a414519f565c56a2c53a4a86beae76ab620dcc03"
|
||||
}
|
||||
@ -0,0 +1,87 @@
|
||||
{
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_data_value": {
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
{
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
"BTree",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOBTree"
|
||||
},
|
||||
"Bucket",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOBucket"
|
||||
},
|
||||
"Set",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOSet"
|
||||
},
|
||||
"TreeSet",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOTreeSet"
|
||||
},
|
||||
"attrname",
|
||||
"downstream",
|
||||
"call",
|
||||
false,
|
||||
"difference",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.difference"
|
||||
},
|
||||
"dump",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.dump_activity"
|
||||
},
|
||||
"element",
|
||||
{
|
||||
"@renku_data_type": "zope.interface.interface.Attribute",
|
||||
"@renku_data_value": {
|
||||
"_Element__tagged_values": null,
|
||||
"__doc__": "the downstream activities",
|
||||
"__name__": "downstream",
|
||||
"interface": {
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.IActivityDownstreamRelation"
|
||||
}
|
||||
}
|
||||
},
|
||||
"interface",
|
||||
{
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.IActivityDownstreamRelation"
|
||||
},
|
||||
"intersection",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.intersection"
|
||||
},
|
||||
"load",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.load_activity"
|
||||
},
|
||||
"multiple",
|
||||
false,
|
||||
"multiunion",
|
||||
null,
|
||||
"name",
|
||||
"downstream",
|
||||
"union",
|
||||
{
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.union"
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"@renku_oid": "9e10d562c1ba4355b04ee58e3e296eb2a6e76e10664740a8aa070d93aed1435b"
|
||||
}
|
||||
5
.renku/metadata/_downstream_relations
Normal file
5
.renku/metadata/_downstream_relations
Normal file
@ -0,0 +1,5 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": null,
|
||||
"@renku_oid": "_downstream_relations"
|
||||
}
|
||||
5
.renku/metadata/activities
Normal file
5
.renku/metadata/activities
Normal file
@ -0,0 +1,5 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": null,
|
||||
"@renku_oid": "activities"
|
||||
}
|
||||
5
.renku/metadata/activities-by-generation
Normal file
5
.renku/metadata/activities-by-generation
Normal file
@ -0,0 +1,5 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": null,
|
||||
"@renku_oid": "activities-by-generation"
|
||||
}
|
||||
5
.renku/metadata/activities-by-usage
Normal file
5
.renku/metadata/activities-by-usage
Normal file
@ -0,0 +1,5 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": null,
|
||||
"@renku_oid": "activities-by-usage"
|
||||
}
|
||||
81
.renku/metadata/activity-catalog
Normal file
81
.renku/metadata/activity-catalog
Normal file
@ -0,0 +1,81 @@
|
||||
{
|
||||
"@renku_data_type": "zc.relation.catalog.Catalog",
|
||||
"@renku_oid": "activity-catalog",
|
||||
"_EMPTY_name_TO_relcount_relset": {
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBTree",
|
||||
"@renku_oid": "858d7628fe5a438bbf51e336cb18f7421ef51da8e4774338aaa970e2037bb1ea",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"_attrs": {
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_oid": "f05b6e08af204b8897ee70197bd9efd0ad51384135314fc2b9c274724c7afb78",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"_name_TO_mapping": {
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBTree",
|
||||
"@renku_oid": "e2338d3976674343b39f5108416f8b36fa2c27be05774ce4924f19a3502899e0",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"_queryFactories": {
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
{
|
||||
"@renku_data_type": "zc.relation.queryfactory.TransposingTransitive",
|
||||
"@renku_oid": "bbc23412ab474e23b4fbaef11ab07402f7f8497995114cef9e802be4ed698b19",
|
||||
"@renku_reference": true
|
||||
}
|
||||
]
|
||||
},
|
||||
"_relLength": {
|
||||
"@renku_data_type": "BTrees.Length.Length",
|
||||
"@renku_data_value": 0
|
||||
},
|
||||
"_relTokens": {
|
||||
"@renku_data_type": "BTrees.OOBTree.OOTreeSet",
|
||||
"@renku_data_value": null
|
||||
},
|
||||
"_relTools": {
|
||||
"BTree": {
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOBTree"
|
||||
},
|
||||
"Bucket": {
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOBucket"
|
||||
},
|
||||
"Set": {
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOSet"
|
||||
},
|
||||
"TreeSet": {
|
||||
"@renku_data_type": "type",
|
||||
"@renku_data_value": "BTrees.OOBTree.OOTreeSet"
|
||||
},
|
||||
"difference": {
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.difference"
|
||||
},
|
||||
"dump": {
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.dump_downstream_relations"
|
||||
},
|
||||
"intersection": {
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.intersection"
|
||||
},
|
||||
"load": {
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "renku.infrastructure.gateway.database_gateway.load_downstream_relations"
|
||||
},
|
||||
"multiunion": null,
|
||||
"union": {
|
||||
"@renku_data_type": "function",
|
||||
"@renku_data_value": "BTrees._OOBTree.union"
|
||||
}
|
||||
},
|
||||
"_reltoken_name_TO_objtokenset": {
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBTree",
|
||||
"@renku_oid": "df86305035964e66a883a2755e164dfe851bfcc8a10c4320968ac3e828213bf0",
|
||||
"@renku_reference": true
|
||||
}
|
||||
}
|
||||
5
.renku/metadata/activity-collections
Normal file
5
.renku/metadata/activity-collections
Normal file
@ -0,0 +1,5 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": null,
|
||||
"@renku_oid": "activity-collections"
|
||||
}
|
||||
Binary file not shown.
5
.renku/metadata/datasets
Normal file
5
.renku/metadata/datasets
Normal file
@ -0,0 +1,5 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": null,
|
||||
"@renku_oid": "datasets"
|
||||
}
|
||||
5
.renku/metadata/datasets-provenance-tails
Normal file
5
.renku/metadata/datasets-provenance-tails
Normal file
@ -0,0 +1,5 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": null,
|
||||
"@renku_oid": "datasets-provenance-tails"
|
||||
}
|
||||
5
.renku/metadata/datasets-tags
Normal file
5
.renku/metadata/datasets-tags
Normal file
@ -0,0 +1,5 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": null,
|
||||
"@renku_oid": "datasets-tags"
|
||||
}
|
||||
Binary file not shown.
Binary file not shown.
Binary file not shown.
Binary file not shown.
@ -0,0 +1,26 @@
|
||||
{
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_data_value": {
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
{
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
"downstream",
|
||||
{
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_oid": "9e10d562c1ba4355b04ee58e3e296eb2a6e76e10664740a8aa070d93aed1435b",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"upstream",
|
||||
{
|
||||
"@renku_data_type": "BTrees.OOBTree.OOBucket",
|
||||
"@renku_oid": "296522fff8334ccea75df004fe8f6f16e5eb4fcec86d472fb0125e0e64e74b27",
|
||||
"@renku_reference": true
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"@renku_oid": "f05b6e08af204b8897ee70197bd9efd0ad51384135314fc2b9c274724c7afb78"
|
||||
}
|
||||
5
.renku/metadata/plans
Normal file
5
.renku/metadata/plans
Normal file
@ -0,0 +1,5 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": null,
|
||||
"@renku_oid": "plans"
|
||||
}
|
||||
5
.renku/metadata/plans-by-name
Normal file
5
.renku/metadata/plans-by-name
Normal file
@ -0,0 +1,5 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": null,
|
||||
"@renku_oid": "plans-by-name"
|
||||
}
|
||||
39
.renku/metadata/project
Normal file
39
.renku/metadata/project
Normal file
@ -0,0 +1,39 @@
|
||||
{
|
||||
"@renku_data_type": "renku.domain_model.project.Project",
|
||||
"@renku_oid": "project",
|
||||
"agent_version": "2.9.4",
|
||||
"annotations": [],
|
||||
"creator": {
|
||||
"@renku_data_type": "renku.domain_model.provenance.agent.Person",
|
||||
"@renku_data_value": {
|
||||
"affiliation": null,
|
||||
"alternate_name": null,
|
||||
"email": "juan.florez-ospina@psi.ch",
|
||||
"id": "mailto:juan.florez-ospina@psi.ch",
|
||||
"name": "Juan Felipe Florez Ospina"
|
||||
}
|
||||
},
|
||||
"date_created": {
|
||||
"@renku_data_type": "datetime.datetime",
|
||||
"@renku_data_value": "2025-06-04T14:52:46.207682+02:00"
|
||||
},
|
||||
"description": null,
|
||||
"id": "/projects/apog/acsmnode",
|
||||
"image": null,
|
||||
"keywords": [],
|
||||
"minimum_renku_version": "2.8.0",
|
||||
"name": "acsmnode",
|
||||
"template_metadata": {
|
||||
"@renku_data_type": "renku.domain_model.project.ProjectTemplateMetadata",
|
||||
"@renku_data_value": {
|
||||
"immutable_template_files": [],
|
||||
"metadata": "{\"__template_source__\": \"renku\", \"__template_ref__\": \"0.7.1\", \"__template_id__\": \"python-minimal\", \"__namespace__\": \"apog\", \"__sanitized_project_name__\": \"\", \"__repository__\": \"\", \"__project_slug__\": \"\", \"__project_description__\": null, \"__renku_version__\": \"2.9.4\", \"__name__\": \"acsmnode\", \"name\": \"acsmnode\", \"__template_version__\": \"0.7.1\", \"__automated_update__\": true}",
|
||||
"ssh_supported": true,
|
||||
"template_id": "python-minimal",
|
||||
"template_ref": "0.7.1",
|
||||
"template_source": "renku",
|
||||
"template_version": "0.7.1"
|
||||
}
|
||||
},
|
||||
"version": 10
|
||||
}
|
||||
152
.renku/metadata/root
Normal file
152
.renku/metadata/root
Normal file
@ -0,0 +1,152 @@
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_data_value": {
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
{
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
{
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
{
|
||||
"@renku_data_type": "builtins.tuple",
|
||||
"@renku_data_value": [
|
||||
"_downstream_relations",
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_oid": "_downstream_relations",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"activities",
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.Index",
|
||||
"@renku_oid": "activities-index",
|
||||
"attribute": "id",
|
||||
"entries": {
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_oid": "activities",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"key_type": null,
|
||||
"name": "activities",
|
||||
"object_type": "renku.domain_model.provenance.activity.Activity"
|
||||
},
|
||||
"activities-by-generation",
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_oid": "activities-by-generation",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"activities-by-usage",
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_oid": "activities-by-usage",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"activity-catalog",
|
||||
{
|
||||
"@renku_data_type": "zc.relation.catalog.Catalog",
|
||||
"@renku_oid": "activity-catalog",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"activity-collections",
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.Index",
|
||||
"@renku_oid": "activity-collections-index",
|
||||
"attribute": "id",
|
||||
"entries": {
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_oid": "activity-collections",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"key_type": null,
|
||||
"name": "activity-collections",
|
||||
"object_type": "renku.domain_model.provenance.activity.ActivityCollection"
|
||||
},
|
||||
"datasets",
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.Index",
|
||||
"@renku_oid": "datasets-index",
|
||||
"attribute": "name",
|
||||
"entries": {
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_oid": "datasets",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"key_type": null,
|
||||
"name": "datasets",
|
||||
"object_type": "renku.domain_model.dataset.Dataset"
|
||||
},
|
||||
"datasets-provenance-tails",
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.Index",
|
||||
"@renku_oid": "datasets-provenance-tails-index",
|
||||
"attribute": "id",
|
||||
"entries": {
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_oid": "datasets-provenance-tails",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"key_type": null,
|
||||
"name": "datasets-provenance-tails",
|
||||
"object_type": "renku.domain_model.dataset.Dataset"
|
||||
},
|
||||
"datasets-tags",
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.Index",
|
||||
"@renku_oid": "datasets-tags-index",
|
||||
"attribute": null,
|
||||
"entries": {
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_oid": "datasets-tags",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"key_type": null,
|
||||
"name": "datasets-tags",
|
||||
"object_type": "persistent.list.PersistentList"
|
||||
},
|
||||
"plans",
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.Index",
|
||||
"@renku_oid": "plans-index",
|
||||
"attribute": "id",
|
||||
"entries": {
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_oid": "plans",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"key_type": null,
|
||||
"name": "plans",
|
||||
"object_type": "renku.domain_model.workflow.plan.AbstractPlan"
|
||||
},
|
||||
"plans-by-name",
|
||||
{
|
||||
"@renku_data_type": "renku.infrastructure.database.Index",
|
||||
"@renku_oid": "plans-by-name-index",
|
||||
"attribute": "name",
|
||||
"entries": {
|
||||
"@renku_data_type": "renku.infrastructure.database.RenkuOOBTree",
|
||||
"@renku_oid": "plans-by-name",
|
||||
"@renku_reference": true
|
||||
},
|
||||
"key_type": null,
|
||||
"name": "plans-by-name",
|
||||
"object_type": "renku.domain_model.workflow.plan.AbstractPlan"
|
||||
},
|
||||
"project",
|
||||
{
|
||||
"@renku_data_type": "renku.domain_model.project.Project",
|
||||
"@renku_oid": "project",
|
||||
"@renku_reference": true
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
}
|
||||
]
|
||||
},
|
||||
"@renku_oid": "root"
|
||||
}
|
||||
2
.renku/renku.ini
Normal file
2
.renku/renku.ini
Normal file
@ -0,0 +1,2 @@
|
||||
[interactive]
|
||||
default_url = /lab
|
||||
1
.renku/template_checksums.json
Normal file
1
.renku/template_checksums.json
Normal file
@ -0,0 +1 @@
|
||||
{".gitlab-ci.yml": "c55bc2b275655014ea91b5cc651384965b166b546843bda85215233a6e091090", "environment.yml": "e81e9a061f19645b9a0e8e353982289338ec158a72534456917ddae832794911", ".renkulfsignore": "b418745d4f9f40d3b05b88c305041316b8c3e9fc6af877a21a37ccc6b43d6d66", "Dockerfile": "b48ea1420ad1931a8f0ecc25aece8f70d7519a5b0fb151adcd67998ef6de61ad", ".gitignore": "7a908bfd4db867f62fa279c53311f117ca4a567feef463203f85b62d8d0b140c", ".dockerignore": "abc0b37932c96cf447b2930bcb2455fac0be146ee9cf1d447f8aef537a531c41", "requirements.txt": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855", "README.md": "8a06667b08b3f69a240508c7c038160b9890f384f0d0accf5414d7d8d3416264", "data/.gitkeep": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855", "notebooks/.gitkeep": "e3b0c44298fc1c149afbf4c8996fb92427ae41e4649b934ca495991b7852b855", ".renku/renku.ini": "5490dcea1aa22839b454ac51d66a1195fd30af11a08e2399cf082d3496bb21e4", "workflows/my-workflow.yaml": "2ef60829869b81bc8f7dcd64ee2140e461af6330591516c2526e801c99554f20"}
|
||||
22
.renkulfsignore
Normal file
22
.renkulfsignore
Normal file
@ -0,0 +1,22 @@
|
||||
# WARNING: editing this file will impact the behavior of renku commands
|
||||
# by telling renku to *not track* listed files with git LFS.
|
||||
#
|
||||
# By default, renku commands track all files above the renku configured lfs_threshold
|
||||
# with git LFS to prevent accidentally checking in large files (default=100kb).
|
||||
# You can update this threshold by calling 'renku config lfs_threshold <size>kb'.
|
||||
#
|
||||
# Use this file to specify particular paths to *not track* with LFS regardless of
|
||||
# their size. The syntax is the same as .gitignore (https://git-scm.com/docs/gitignore).
|
||||
# Remember: files listed here, when generated during renku commands, will add to
|
||||
# the size of your repo, and could slow things down.
|
||||
#
|
||||
# See https://github.com/SwissDataScienceCenter/renku-project-template for proper
|
||||
# usage.
|
||||
|
||||
# Warning: removing these lines will check source files (e.g. generated ipynb files from papermill) into LFS and they
|
||||
# will no longer be displayed in the renku UI
|
||||
*.ipynb
|
||||
*.py
|
||||
*.r
|
||||
*.md
|
||||
*.rst
|
||||
52
Dockerfile
Normal file
52
Dockerfile
Normal file
@ -0,0 +1,52 @@
|
||||
########################################################
|
||||
# Renku install section - do not edit #
|
||||
|
||||
FROM renku/renkulab-py:3.10-0.18.1 as builder
|
||||
|
||||
# RENKU_VERSION determines the version of the renku CLI
|
||||
# that will be used in this image. To find the latest version,
|
||||
# visit https://pypi.org/project/renku/#history.
|
||||
ARG RENKU_VERSION=2.9.4
|
||||
|
||||
# Install renku from pypi or from github if a dev version
|
||||
RUN if [ -n "$RENKU_VERSION" ] ; then \
|
||||
source .renku/venv/bin/activate ; \
|
||||
currentversion=$(renku --version) ; \
|
||||
if [ "$RENKU_VERSION" != "$currentversion" ] ; then \
|
||||
pip uninstall renku -y ; \
|
||||
gitversion=$(echo "$RENKU_VERSION" | sed -n "s/^[[:digit:]]\+\.[[:digit:]]\+\.[[:digit:]]\+\(rc[[:digit:]]\+\)*\(\.dev[[:digit:]]\+\)*\(+g\([a-f0-9]\+\)\)*\(+dirty\)*$/\4/p") ; \
|
||||
if [ -n "$gitversion" ] ; then \
|
||||
pip install --no-cache-dir --force "git+https://github.com/SwissDataScienceCenter/renku-python.git@$gitversion" ;\
|
||||
else \
|
||||
pip install --no-cache-dir --force renku==${RENKU_VERSION} ;\
|
||||
fi \
|
||||
fi \
|
||||
fi
|
||||
# End Renku install section #
|
||||
########################################################
|
||||
|
||||
FROM renku/renkulab-py:3.10-0.18.1
|
||||
|
||||
# Uncomment and adapt if code is to be included in the image
|
||||
# COPY src /code/src
|
||||
|
||||
# Uncomment and adapt if your R or python packages require extra linux (ubuntu) software
|
||||
# e.g. the following installs apt-utils and vim; each pkg on its own line, all lines
|
||||
# except for the last end with backslash '\' to continue the RUN line
|
||||
#
|
||||
# USER root
|
||||
# RUN apt-get update && \
|
||||
# apt-get install -y --no-install-recommends \
|
||||
# apt-utils \
|
||||
# vim
|
||||
# USER ${NB_USER}
|
||||
|
||||
# install the python dependencies
|
||||
COPY requirements.txt environment.yml /tmp/
|
||||
RUN mamba env update -q -f /tmp/environment.yml && \
|
||||
/opt/conda/bin/pip install -r /tmp/requirements.txt --no-cache-dir && \
|
||||
mamba clean -y --all && \
|
||||
mamba env export -n "root" && \
|
||||
rm -rf ${HOME}/.renku/venv
|
||||
|
||||
COPY --from=builder ${HOME}/.renku/venv ${HOME}/.renku/venv
|
||||
14
environment.yml
Normal file
14
environment.yml
Normal file
@ -0,0 +1,14 @@
|
||||
name: "base"
|
||||
# WARNING : As Renku makes use of mamba for more efficient package builds, please use the popular "conda-forge" channel
|
||||
# For more details : https://mamba.readthedocs.io/en/latest/user_guide/troubleshooting.html#mixing-the-defaults-and-conda-forge-channels
|
||||
# Using the defaults channel from Anaconda can easily result in getting your
|
||||
# laptop, CI pipeline, etc. blacklisted by Anaconda which makes building packages
|
||||
# impossible. To get permission to use Anaconda again you need to either pay or prove that
|
||||
# you meet the requirements for a free license. Using the conda-forge channel avoids
|
||||
# these restrictions completely.
|
||||
channels:
|
||||
- conda-forge
|
||||
# dependencies:
|
||||
# - add packages here
|
||||
# - one per line
|
||||
prefix: "/opt/conda"
|
||||
0
notebooks/.gitkeep
Normal file
0
notebooks/.gitkeep
Normal file
@ -1,10 +0,0 @@
|
||||
dash==2.17.1
|
||||
dash-bootstrap-components==1.6.0
|
||||
flask==3.0.3
|
||||
h5py==3.10.0
|
||||
matplotlib==3.8.4
|
||||
numpy==1.26.4
|
||||
openai==1.25.1
|
||||
pandas==2.2.2
|
||||
plotly==5.18.0
|
||||
requests==2.31.0
|
||||
|
||||
37
workflows/my-workflow.yaml
Normal file
37
workflows/my-workflow.yaml
Normal file
@ -0,0 +1,37 @@
|
||||
# === Welcome to the template Renku Workflow file! ===
|
||||
# You can use this file to encode in what order your data processing steps should be run,
|
||||
# making it easier for you to run your workflow, and for others to understand it!
|
||||
|
||||
# === How to use this template ===
|
||||
# Replace the script and data paths in the template below to match your analysis commands.
|
||||
# Then, run `renku run my-workflow.yaml` in a terminal to execute the workflow!
|
||||
# If you are working in a notebook, run `! renku run my-workflow.yaml` in a notebook cell.
|
||||
|
||||
# === Docs ===
|
||||
# To learn much more about what you can do with the Renku Workflow File, see our docs:
|
||||
# https://renku.readthedocs.io/en/stable/topic-guides/workflows/workflow-file.html
|
||||
|
||||
name: my-workflow
|
||||
steps:
|
||||
step-one:
|
||||
command: python $n $my-script $input-data $output-data
|
||||
inputs:
|
||||
- my-script:
|
||||
path: src/script.py
|
||||
- input-data:
|
||||
path: data/input/sample_data.csv
|
||||
outputs:
|
||||
- output-data:
|
||||
path: data/output/results.csv
|
||||
parameters:
|
||||
- n:
|
||||
prefix: -n
|
||||
value: 10
|
||||
|
||||
# === Adding more steps ===
|
||||
# You can add as many steps as you want to your workflow by copy and pasting the step template above
|
||||
# TIP: To run just one step from a workflow, simply add the step name to the command, like this:
|
||||
# `renku run my-workflow.yaml make-plot`
|
||||
# make-plot:
|
||||
# command: python $another-script $output-data $my-plot
|
||||
# ...
|
||||
Reference in New Issue
Block a user