 florez_j
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ceb8a34ee0
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Commented out no needed python import statements
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2024-04-23 13:23:13 +02:00 |
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florez_j
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129443d6d9
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Updated python libraries and intallation instructions.
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2024-04-23 13:20:42 +02:00 |
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florez_j
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8876d5af4f
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Example data integretion configuration files
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2024-04-23 12:03:24 +02:00 |
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florez_j
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f65abda6d1
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jupyter notebook to run data integration workflow
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2024-04-23 11:11:13 +02:00 |
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florez_j
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a12cd80355
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Implemented function that takes yaml config files specifying data integration output
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2024-04-23 11:10:13 +02:00 |
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florez_j
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b233dc094d
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yaml intrument configuration file for text data
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2024-04-23 11:07:49 +02:00 |
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florez_j
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d3ec0bd473
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Included additional directory path validation based on dir keywords
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2024-04-23 11:05:20 +02:00 |
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florez_j
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9d9e9dcfe5
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Added lines to parse instrument reader properties from yaml file.
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2024-04-23 11:02:10 +02:00 |
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florez_j
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074d2e3954
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Removed config_file output file naming and instead user now inputs desired output filename. Also added input argument to introduce root level metadata.
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2024-04-18 19:14:06 +02:00 |
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florez_j
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1ed37920c2
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Replaced git commands in terms of subprocess.run
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2024-04-17 15:26:45 +02:00 |
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florez_j
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a1c88fdb5a
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Added lines to flatten (shorten) original directory paths in the resulting hdf5 file.
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2024-04-17 15:20:26 +02:00 |
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florez_j
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8005b60579
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Included a boolean input argument hdf5_upload to deactivate hdf5 upload for testing.
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2024-04-07 17:09:01 +02:00 |
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florez_j
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edd1bbf5be
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Added an import and treemap to png statemets, but for some reason didnot work, and took forever to run. So, I left the lines but for now commented them out.
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2024-04-07 16:55:37 +02:00 |
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florez_j
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89e94a1b2b
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Renamed forth_submit_.. function to last_submit ..
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2024-04-05 17:21:18 +02:00 |
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florez_j
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5e70d9158b
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Deleted function third_complete_metadata_review() because forth_complete_metadata_review() is the same. Also, modified a substring of their name from complete to submit and submit to save for clarity. Usually submission is the last step of a review process.
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2024-04-05 17:10:34 +02:00 |
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florez_j
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d68dc98070
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Implemented some safeguards that enable only commits of untracked metadata review files
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2024-04-04 14:20:13 +02:00 |
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florez_j
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d6ee987859
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Submitted metadata review.
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2024-04-04 14:07:54 +02:00 |
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florez_j
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12b3accad9
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Initialized metadata review.
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2024-04-04 14:06:21 +02:00 |
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florez_j
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e9578a775a
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Submitted metadata review.
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2024-04-04 13:23:52 +02:00 |
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florez_j
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7a39c49931
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Initialized metadata review.
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2024-04-04 13:16:33 +02:00 |
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florez_j
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5839c0f466
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Resolved incoming changes from main branch
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2024-04-04 13:07:43 +02:00 |
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florez_j
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44d4a7b29b
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.ipybn
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2024-04-04 13:00:56 +02:00 |
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florez_j
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dd1f1245e3
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Refactored comment lines.
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2024-04-04 12:58:17 +02:00 |
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florez_j
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2d5fecfb34
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Removed git checkout statements, to avoid conflicting changes of .ipybn files.
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2024-04-04 12:56:37 +02:00 |
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florez_j
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96c68f7614
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Added .ipynb files to gitignore
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2024-04-04 11:18:07 +02:00 |
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florez_j
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fa4fe691d0
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Refactored a few git statemets in terms of subprocess.run
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2024-04-04 11:02:24 +02:00 |
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florez_j
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48d3b8f492
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Submitted previous deletes to clean working directory tree
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2024-04-04 10:58:16 +02:00 |
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florez_j
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811a4a0615
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Initialized metadata review process.
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2024-04-04 09:51:39 +02:00 |
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florez_j
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a2e6d823ce
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Submitted previous deletes to clean working directory tree
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2024-04-04 09:40:24 +02:00 |
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florez_j
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0417ac6deb
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Modified hdf5 file path whose metadata is to be reviewed.
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2024-04-04 09:31:19 +02:00 |
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florez_j
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dee204010d
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Initialized metadata review process.
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2024-04-04 09:23:55 +02:00 |
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florez_j
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72e37ed277
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Implemented jupyter notebooks for metadata review workflow excecution.
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2024-04-04 09:18:36 +02:00 |
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florez_j
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719e9d6672
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Repurposed the role of the config_file.py. Now it only provides functions to select the file_readers based on group id and produce a created_at timestamp.
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2024-04-03 13:55:54 +02:00 |
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florez_j
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5cd19979b6
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Implemented first approach to data integration workflow
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2024-04-03 13:51:21 +02:00 |
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florez_j
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f9b31c06fd
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Reimplemented file filtering, first file extension contraints are imposed and then file keyword contraints.
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2024-04-03 13:49:16 +02:00 |
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florez_j
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9cde013be0
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Modified node values as the number of children of each group. When nodes are datasets, their value is 1.
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2024-04-02 18:48:50 +02:00 |
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florez_j
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9071120e50
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Refactored code to read .dat and .txt files in binary mode first rb, then the prespecified encoding is used to decode the lines. This is to have more control over the decoding process and be able to better spot possible encoding errors.
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2024-04-02 18:35:04 +02:00 |
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florez_j
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f351f102b7
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Commented out a print statement.
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2024-04-02 18:31:58 +02:00 |
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florez_j
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39cae66936
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Implemented a two important changes. 1. filename of output file is not passed as input but it is automatically computed based on an input config_param dict. 2) input filenames in file system path are now filtered on an initial walk through the directory tree. This is to use stored path filenames for prunning directory tree, later on.
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2024-04-02 17:33:58 +02:00 |
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florez_j
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9c70fd643f
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Refactored code in terms of subprocess for git functionality.
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2024-03-28 19:38:12 +01:00 |
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florez_j
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0fcdc4ad2e
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Refactored code in terms of subprocess for git functionlity
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2024-03-28 19:36:50 +01:00 |
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florez_j
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accb271d83
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Submitted metadata review.
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2024-03-28 19:33:52 +01:00 |
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florez_j
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8991dfd6df
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Initialized metadata review process.
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2024-03-28 19:32:30 +01:00 |
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florez_j
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c552752468
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Submitted metadata review.
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2024-03-28 19:31:19 +01:00 |
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florez_j
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5d54ac99cd
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Submitted metadata review.
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2024-03-28 19:27:32 +01:00 |
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florez_j
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1df8faedf6
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Submitted metadata review.
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2024-03-28 19:24:23 +01:00 |
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florez_j
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366e01fa4c
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Initialized metadata review process.
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2024-03-28 19:11:46 +01:00 |
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florez_j
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2a7d1eeb89
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Initialized metadata review process.
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2024-03-28 19:11:46 +01:00 |
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florez_j
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e08119e9b6
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Initialized metadata review process.
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2024-03-28 19:09:51 +01:00 |
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florez_j
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c3048f3083
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Submitted metadata review.
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2024-03-28 18:28:58 +01:00 |
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