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Deleted function third_complete_metadata_review() because forth_complete_metadata_review() is the same. Also, modified a substring of their name from complete to submit and submit to save for clarity. Usually submission is the last step of a review process.

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florez_j
2024-04-05 17:10:34 +02:00
parent d68dc98070
commit 5e70d9158b
1 changed files with 6 additions and 36 deletions
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42
src/metadata_review_lib.py
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@ -87,7 +87,7 @@ def first_initialize_metadata_review(hdf5_file_path, reviewer_attrs):
current_branch_command = ['git','branch','--show-current']
curr_branch = subprocess.run(current_branch_command,capture_output=True,text=True,check=True)
if not branch_name in curr_branch.stdout:
raise ValueError("Please checkout the branch: "+branch_name+" via Git Bash Terminal while in the project's directory")
raise ValueError("Branch "+branch_name+" was not found. \nPlease open a Git Bash Terminal, and follow the below instructions: \n1. Change directory to your project's directory. \n2. Excecute the command: git checkout "+branch_name)
# Check if review file already exists and then check if it is still untracked
review_yaml_file_path = os.path.join("review/",filename+YAML_EXT)
@ -142,7 +142,7 @@ def first_initialize_metadata_review(hdf5_file_path, reviewer_attrs):
def second_submit_metadata_review(review_yaml_file_path, reviewer_attrs):
def second_save_metadata_review(review_yaml_file_path, reviewer_attrs):
"""
Once you're done reviewing the yaml representation of hdf5 file in review folder.
Change the review status to complete and save (add and commit) modified .yalm and .txt files in the project by
@ -193,37 +193,6 @@ def second_submit_metadata_review(review_yaml_file_path, reviewer_attrs):
def third_complete_metadata_review(reviewer_attrs):
initials = reviewer_attrs['initials']
push_command = lambda repository,refspec: ['git','push',repository,refspec]
list_branches_command = ['git','branch','--list']
repository = 'origin'
branch_name = '-'.join([reviewer_attrs['type'],'review','by',initials])
branches = subprocess.run(list_branches_command,capture_output=True,text=True,check=True)
if not branch_name in branches.stdout:
print('There is no branch named '+branch_name+'.\n')
print('Make sure to run metadata reviewer workflow from the beginning without missing any steps.')
return
current_branch_command = ['git','branch','--show-current']
curr_branch = subprocess.run(current_branch_command,capture_output=True,text=True,check=True)
if not branch_name in curr_branch.stdout:
print('Complete metadata review could not be completed.\n')
print('Make sure a metadata-reviewer workflow has already been started on branch '+branch_name+'\n')
print('The step "Complete metadata review" will have no effect.')
return
result = subprocess.run(push_command(repository,branch_name),capture_output=True,check=True)
print(result.stdout)
return result.returncode
def third_update_hdf5_file_with_review(input_hdf5_file, yalm_review_file, reviewer_attrs = {}):
@ -331,13 +300,14 @@ def third_update_hdf5_file_with_review(input_hdf5_file, yalm_review_file, review
# print(exc)
def fourth_complete_metadata_review(reviewer_attrs):
def fourth_submit_metadata_review(reviewer_attrs):
initials =reviewer_attrs['initials']
repository = 'origin'
branch_name = '-'.join([reviewer_attrs['type'],'review','by',initials])
push_command = lambda repository,refspec: ['git','push',repository,refspec]
current_branch_command = ['git','branch','--show-current']
list_branches_command = ['git','branch','--list']
@ -354,7 +324,7 @@ def fourth_complete_metadata_review(reviewer_attrs):
print('The step "Complete metadata review" will have no effect.')
return
push_command = lambda repository,refspec: ['git','push',repository,refspec]
# push
result = subprocess.run(push_command(repository,branch_name),capture_output=True,text=True,check=True)
@ -365,7 +335,7 @@ def fourth_complete_metadata_review(reviewer_attrs):
#shutil.rmtree(os.path.join(os.path.abspath(os.curdir),"review"))
# 3. git rm review/
# 4. git commit -m "Completed review process. Current state of hdf5 file and yml should be up to date."
return True
return result.returncode
#import config_file