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Included a boolean input argument hdf5_upload to deactivate hdf5 upload for testing.

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florez_j
2024-04-07 17:09:01 +02:00
parent edd1bbf5be
commit 8005b60579
1 changed files with 7 additions and 2 deletions
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9
src/metadata_review_lib.py
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@ -194,7 +194,7 @@ def second_save_metadata_review(review_yaml_file_path, reviewer_attrs):
def third_update_hdf5_file_with_review(input_hdf5_file, yalm_review_file, reviewer_attrs = {}):
def third_update_hdf5_file_with_review(input_hdf5_file, yalm_review_file, reviewer_attrs = {}, hdf5_upload : bool = False):
"""Third"""
# compare review file with current yalm file and then based on the changes open hdf5 file and access only
@ -275,12 +275,17 @@ def third_update_hdf5_file_with_review(input_hdf5_file, yalm_review_file, review
status = subprocess.run(status_command,capture_output=True,check=True)
if hdf5_upload:
upload_ext = ['.h5','.yaml']
else:
upload_ext = ['.yaml']
files_to_add_list = []
for line in status.stdout.splitlines():
# conver line from bytes to str
tmp = line.decode("utf-8")
if 'modified' in tmp:
if any([ext in tmp for ext in ['.h5','.yaml']] ):
if any([ext in tmp for ext in upload_ext] ):
files_to_add_list.append(tmp.split()[1])
if files_to_add_list:
output = subprocess.run(add_command(files_to_add_list),capture_output=True,check=True)