27 Commits

Author SHA1 Message Date
f3ff32e049 Update to pipelines/data_integration.py. Added feature to use environment variable MOUNT_DRIVE defined in .env file. 2025-06-22 12:11:48 +02:00
a70b012da5 Simplify output dir and file naming 2025-06-20 11:47:19 +02:00
773b6a6fbe Fix import statement in pipelines.data_integration.py 2025-03-14 10:12:57 +01:00
064b8b3a62 Update import statements in pipelines/data_integration.py. from instruments.readers import ... -> from instruments import ... 2025-02-25 09:21:52 +01:00
821d314cb6 Change import statements with try except to enable explicit import of submodules from import to avoid conflicts with parent project. 2025-02-22 17:10:53 +01:00
32bba4239a Synch with remote repo 2025-02-03 10:31:48 +01:00
1ae607f73b Add validation step to yaml file validation to ensure list type and a minimun length for the 'instrument_datafolder' keyword. 2025-01-22 15:55:21 +01:00
1b2b319295 Attempt to dynamically resolve path to dima package, when excecuted from command line. 2024-11-24 17:37:38 +01:00
d13e10e44f Modified logger setup to create monthly logs 2024-11-21 11:46:11 +01:00
ca2c98eebc Fixed command line interface bug 2024-11-10 18:19:59 +01:00
8d17bf267c Major code refactoring and simplifications to enhance modularity. Included a command line interface. 2024-11-01 09:52:41 +01:00
510683a50d Renamed the input argument yaml_review_file as review_yaml_file. 2024-11-01 09:51:12 +01:00
e2fec03d4a Included cli commands update and serialize to simplify running metadata revision pipeline. 2024-10-29 07:56:43 +01:00
74633adf7f Removed unused import statements 2024-10-28 16:37:32 +01:00
cc96672245 Moved git related operations from pipelines/ to src/git_ops.py 2024-10-28 16:30:34 +01:00
15b0ff3cc4 Added function to validate review yaml file, and updated update_hdf5_with_review function 2024-10-28 16:20:28 +01:00
69b73c26b0 Corrected import statements due to dependency name changes 2024-10-17 16:52:42 +02:00
2a330fcf92 Added 'filename_format' attribute to YAML schema. It takes as value a string of comma separated keys from available attributes in YAML file. 2024-10-14 16:01:24 +02:00
1954542031 Fixed bug introduce in logger due to invalid date naming replace : with - 2024-10-10 14:29:36 +02:00
7653e982a4 Updated function dependencies to reflect changes made to hdf5_ops.py 2024-10-10 11:02:05 +02:00
6f5d4adcee Implemented metadata append, rename, delete, and update operations on the hdf5 manager object and refactored metadata update script based on yaml file to use said operations. 2024-09-30 16:32:39 +02:00
afe31288a0 Refactored a few function calls due to ranming changes in utils module 2024-09-27 08:58:35 +02:00
a92660049f Moved is_structured_array() and to_serializable_dtype() to utils, ranamed a few functions and propagated changes to dependent modules. 2024-09-26 14:03:11 +02:00
a57e46d89c Renamed take_yml_snapshot_of_hdf5_file func as to_yaml func 2024-09-25 16:49:44 +02:00
df2f7b3de6 Abstracted reusable steps in integration_sources as dima_pipeline.py and added functionality to make a collection of hdf5 files, where each represents an single experiment of campaign. 2024-09-25 15:23:23 +02:00
9eeb9d6380 Moved src/metadata_review_lib.py pipelines/metadata_revision.py 2024-09-17 16:55:22 +02:00
07401c895f Moved src/data_integration_lib.py -> pipelines/data_integration.py 2024-09-17 15:32:23 +02:00