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334335387e
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Update to notebooks/demo_data_integration.ipynb. Step description now includes information about set up with network_mount env variable
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2025-06-22 12:16:26 +02:00 |
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cbcebd998a
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Fix typos in README.md and commplemtned some information about network drives.
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2025-06-22 12:15:34 +02:00 |
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e851131269
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Append new functions to utils/g5505_utils.py. This search for .env file in root directory
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2025-06-22 12:13:14 +02:00 |
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f3ff32e049
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Update to pipelines/data_integration.py. Added feature to use environment variable MOUNT_DRIVE defined in .env file.
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2025-06-22 12:11:48 +02:00 |
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be7cf0ba12
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Re-add sanitized config files
- Replaced sensitive server paths with placeholders
- Ensure .env is used to provide values
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2025-06-22 10:45:44 +02:00 |
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630189c5d7
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Update input_files/campaignDescriptor3_NG.yaml input directory due changes in source directory
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2025-06-22 10:42:20 +02:00 |
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e6b8b60258
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update gitignore
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2025-06-21 20:28:49 +02:00 |
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a70b012da5
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Simplify output dir and file naming
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2025-06-20 11:47:19 +02:00 |
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cc702ee17d
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Change output directory to data/ for all descriptors
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2025-06-20 11:45:25 +02:00 |
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177bcee400
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Refactor step 1 in notebook to facilitate usage of campaign descriptors
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2025-06-20 10:37:01 +02:00 |
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b610b4e337
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Rename yaml files in input_files/ as campaign descriptors for consistency with idear project.
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2025-06-20 10:24:53 +02:00 |
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f4ddd36ef2
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Clean import statements
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2025-06-19 20:49:36 +02:00 |
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8e6ee49188
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Modify utils/g5505_utils.py. Implement handling unicode character errors.
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2025-06-19 20:49:14 +02:00 |
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617a923fb6
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Add processing_Script and processing_data and actris_level to output metadata
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2025-06-19 20:41:17 +02:00 |
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b96c04fc01
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Refactor instruments/readers/g5505_text_reader.py, some code abstracted as functions to improve readabilitity.
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2025-06-19 20:40:14 +02:00 |
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f555f7f199
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Implement skipping in convert_attrdict_to_np_structured_array(attr_value: dict) when dictionary values are not scalar. This ensures compatible values are transfered while the rest simply dicarded.
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2025-06-10 16:03:01 +02:00 |
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7d710c1e62
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Fix bug while reading yaml file from utils/g5505_utils.py
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2025-06-10 14:38:29 +02:00 |
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ab897018d9
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Add exclude paths set through yaml file
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2025-06-10 11:08:14 +02:00 |
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83cec97e83
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Fix bug instruments/readers/structured_file_reader.py. pd.to_dict return a list of dicts so we need to handle each item seprately using a loop.
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2025-06-07 19:14:53 +02:00 |
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f640205b12
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Add new file reader instruments/readers/structured_file_reader.py, and update registry.py and yaml
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2025-06-07 18:15:41 +02:00 |
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e80c19ef61
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Update src/hdf5_writer.py to consider data lineage metadata in data ingestion process
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2025-06-07 15:31:13 +02:00 |
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a95fc1fc6a
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Modified output_file_directory attribute in yaml files as ../output_files/
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2025-06-07 15:30:19 +02:00 |
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87462211a9
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Update instruments/readers/nasa_ames_reader.py to handle dirty text entries. Dirty entries of time variables that cannot be properly processed are sent to nat
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2025-05-27 10:12:20 +02:00 |
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6851f03dbd
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Restore instruments/readers/nasa_ames_reader.py to previous version.
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2025-05-26 19:39:21 +02:00 |
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bd74f8310c
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Record missing values for each variable according to EBAS value convention
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2025-05-21 13:53:18 +02:00 |
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e4b2a4cd5a
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Split header in three parts and detect variables and variable descriptions added to attribute dictionary
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2025-05-21 09:19:16 +02:00 |
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a22532d08d
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Register new file reader in the reader registry system.
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2025-05-14 13:51:28 +02:00 |
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ad4339a76b
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Added new filereader dictionary pair for nasames files. This is a first version that may change.
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2025-05-14 13:50:08 +02:00 |
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773b6a6fbe
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Fix import statement in pipelines.data_integration.py
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2025-03-14 10:12:57 +01:00 |
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9276f060b0
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WIP: Update contributing and acknowledgement sections.
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2025-03-11 14:03:22 +01:00 |
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32abd4cd56
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Implemented hdf5_file_reader.py and updated register.yaml and hdf5_writer.py. This replaces previous function __copy_file_in_group().
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2025-02-25 12:25:15 +01:00 |
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5f9f09d288
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Merge branch 'feature/DB_for_FileReader_Repo' into 'main'
Restructuring of file reader system to process multi-instrument data folders.
See merge request 5505-public/dima!3
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2025-02-25 10:48:59 +01:00 |
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295b43a89a
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Merge branch 'main' into 'feature/DB_for_FileReader_Repo'
# Conflicts:
# instruments/filereader_registry.py
# pipelines/data_integration.py
# src/hdf5_writer.py
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2025-02-25 10:41:02 +01:00 |
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064b8b3a62
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Update import statements in pipelines/data_integration.py. from instruments.readers import ... -> from instruments import ...
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2025-02-25 09:21:52 +01:00 |
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db4bb0ef03
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Implemented create_hdf5_from_filesystem_new() using new instrument readers cml interface and subprocesses. This facilitates extension of file reading capabilities by collaborators without requiring changes to file_registry.py. Only additions in folders and registry.yaml.
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2025-02-24 18:48:03 +01:00 |
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92a2560ed7
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Update all file readers with command line interface so we can run them as a subprocess. Added also registry.yaml to decouple code from user-based instrument adaptations or extensions.
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2025-02-24 17:27:12 +01:00 |
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9511377883
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Merge branch 'main' of https://gitlab.psi.ch/5505-public/dima
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2025-02-22 18:02:45 +01:00 |
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1e67745fa4
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Fix import for filereader_registry.py after moving it from intruments/readers/ one level above.
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2025-02-22 17:59:00 +01:00 |
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6ebc699a43
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Moved filereader_registry.py outside readers folder.
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2025-02-22 17:53:19 +01:00 |
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bb48cfa0cd
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Moved filereader_registry.py outside readers folder.
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2025-02-22 17:51:56 +01:00 |
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821d314cb6
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Change import statements with try except to enable explicit import of submodules from import to avoid conflicts with parent project.
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2025-02-22 17:10:53 +01:00 |
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8ce6f588dc
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Implement data_lineage_metadata.json detection and then use it to annotate associated file.
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2025-02-10 15:56:34 +01:00 |
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68a9928c39
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Enable boolean type columns from pandas DataFrame to be suitably converted into numpy structured array
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2025-02-10 15:52:17 +01:00 |
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c28286a626
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Make file reader selection case insensitive by using ext.lower() and update config_text_reader.py to point to renamed dictionary.
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2025-02-08 19:45:16 +01:00 |
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0b29e2ec68
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remove instruments/dictionaries/ICAD_NO2.yaml. Its dict terms are now in ICAD.yaml.
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2025-02-08 19:23:37 +01:00 |
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609bb0b859
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Add dict terms from ICAD_NO2.yaml
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2025-02-08 19:22:27 +01:00 |
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ef7fe70bf0
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Combine dictionaries of ICAD_HONO.yaml and ICAD_NO2.yaml into ICAD.yaml
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2025-02-08 19:21:17 +01:00 |
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b58e205f9f
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Remove skip directory condition when directory keywords are empty. Here, all paths to files should be considered.
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2025-02-07 16:37:01 +01:00 |
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f986edd4a5
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Fix reader txt/csv default behavior.
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2025-02-07 16:25:45 +01:00 |
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0d26777732
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Enable instrumentFolder of form <instFolder>/<category>/ to be trasfered without flatenning
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2025-02-07 16:24:21 +01:00 |
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