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Updated function dependencies to reflect changes made to hdf5_ops.py

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florez_j
2024-10-10 11:02:05 +02:00
parent 6be3b31247
commit 7653e982a4
1 changed files with 2 additions and 3 deletions
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5
pipelines/metadata_revision.py
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@ -8,7 +8,6 @@ import h5py
import yaml
import utils.g5505_utils as utils
import src.hdf5_ops as hdf5_ops
import src.hdf5_lib as hdf5_lib
import src.git_ops as git_ops
@ -218,7 +217,7 @@ def update_hdf5_file_with_review(input_hdf5_file, yaml_review_file):
# Initialize HDF5 operations manager
DataOpsAPI = hdf5_ops.HDF5DataOpsManager(input_hdf5_file)
DataOpsAPI.open_file()
DataOpsAPI.load_file_obj()
# Iterate over each object in the YAML dictionary
for obj_name, attr_dict in yaml_dict.items():
@ -254,7 +253,7 @@ def update_hdf5_file_with_review(input_hdf5_file, yaml_review_file):
DataOpsAPI.delete_metadata(obj_name, delete_dict)
# Close hdf5 file
DataOpsAPI.close_file()
DataOpsAPI.unload_file_obj()
# Regenerate yaml snapshot of updated HDF5 file
output_yml_filename_path = hdf5_ops.serialize_metadata(input_hdf5_file)
print(f'{output_yml_filename_path} was successfully regenerated from the updated version of{input_hdf5_file}')