26 lines
489 B
Bash
26 lines
489 B
Bash
#!/bin/bash
|
|
|
|
module purge
|
|
module load crystfel/0.10.2
|
|
|
|
indexamajig -i <path-to-images> \
|
|
-o <output.steam> \
|
|
--geometry=<path-to-geom> \
|
|
--pdb=<path-to-cell> \
|
|
--indexing=xgandalf-latt-cell \
|
|
--peaks=peakfinder8 \
|
|
--integration=rings-nograd \
|
|
--tolerance=10.0,10.0,10.0,2,3,2 \
|
|
--threshold=10 \
|
|
--min-snr=5 \
|
|
--int-radius=5,5,9 \
|
|
-j 32 \
|
|
--no-multi \
|
|
--no-retry \
|
|
--check-peaks \
|
|
--max-res=3000 \
|
|
--min-pix-count=2 \
|
|
--local-bg-radius=4 \
|
|
--min-res=85
|
|
|